BLASTX nr result
ID: Catharanthus22_contig00018553
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus22_contig00018553
(221 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006352116.1| PREDICTED: DNA-directed RNA polymerase V sub... 72 6e-11
ref|XP_004247645.1| PREDICTED: DNA-directed RNA polymerase II su... 72 1e-10
ref|XP_002314653.1| hypothetical protein POPTR_0010s08780g [Popu... 65 7e-09
gb|EOY05898.1| RNA polymerase Rpb7-like, N-terminal domain, puta... 62 6e-08
gb|EOY05895.1| DNA-directed RNA polymerase II subunit RPB7, puta... 62 6e-08
gb|EXB38410.1| DNA-directed RNA polymerase II subunit [Morus not... 60 3e-07
gb|EMJ24730.1| hypothetical protein PRUPE_ppa012042mg [Prunus pe... 58 1e-06
ref|XP_006282711.1| hypothetical protein CARUB_v10005692mg, part... 56 4e-06
ref|XP_006838851.1| hypothetical protein AMTR_s00002p00265350 [A... 55 1e-05
>ref|XP_006352116.1| PREDICTED: DNA-directed RNA polymerase V subunit 7-like [Solanum
tuberosum]
Length = 186
Score = 72.4 bits (176), Expect = 6e-11
Identities = 35/59 (59%), Positives = 42/59 (71%)
Frame = +1
Query: 1 ENPFFLSNDMSRIEKNGVVCFSVFAVRWKEDKYRQFKILASIEGDSLGPVSLAGTDVIE 177
ENPFF+ ND SRIE V F V+A+RW R+F +LASI+GDSLGPVSL G D +E
Sbjct: 127 ENPFFICNDQSRIENEVAVRFVVYAMRWSRTLVRKFDVLASIDGDSLGPVSLNGFDGLE 185
>ref|XP_004247645.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB7-like
[Solanum lycopersicum]
Length = 186
Score = 71.6 bits (174), Expect = 1e-10
Identities = 35/59 (59%), Positives = 41/59 (69%)
Frame = +1
Query: 1 ENPFFLSNDMSRIEKNGVVCFSVFAVRWKEDKYRQFKILASIEGDSLGPVSLAGTDVIE 177
ENPFF+ ND SRIE V F V+A+RW R+F +LASIEGD LGPVSL G D +E
Sbjct: 127 ENPFFICNDQSRIENEVAVRFVVYAMRWSRTLVRKFDVLASIEGDCLGPVSLNGFDGLE 185
>ref|XP_002314653.1| hypothetical protein POPTR_0010s08780g [Populus trichocarpa]
gi|222863693|gb|EEF00824.1| hypothetical protein
POPTR_0010s08780g [Populus trichocarpa]
Length = 189
Score = 65.5 bits (158), Expect = 7e-09
Identities = 33/62 (53%), Positives = 45/62 (72%), Gaps = 3/62 (4%)
Frame = +1
Query: 1 ENPFFLSNDMSRIEKNGVVCFSVFAVRWKE---DKYRQFKILASIEGDSLGPVSLAGTDV 171
ENP FL+++++RIE N +V FSV VRW E D R F +LAS+ GDSLGP+SL G+D
Sbjct: 127 ENPVFLNDELARIENNVLVRFSVLDVRWIEKMWDMRRDFMMLASLVGDSLGPISLCGSDE 186
Query: 172 IE 177
++
Sbjct: 187 LD 188
>gb|EOY05898.1| RNA polymerase Rpb7-like, N-terminal domain, putative isoform 4
[Theobroma cacao] gi|508714002|gb|EOY05899.1| RNA
polymerase Rpb7-like, N-terminal domain, putative
isoform 4 [Theobroma cacao]
Length = 185
Score = 62.4 bits (150), Expect = 6e-08
Identities = 30/57 (52%), Positives = 42/57 (73%)
Frame = +1
Query: 7 PFFLSNDMSRIEKNGVVCFSVFAVRWKEDKYRQFKILASIEGDSLGPVSLAGTDVIE 177
P F+S+D+S+IEK+ VVCF V AVRW R F++LAS+ DSLGP+SL +D ++
Sbjct: 129 PVFISDDLSKIEKDVVVCFLVLAVRWISAS-RDFELLASLNADSLGPISLPWSDEVD 184
>gb|EOY05895.1| DNA-directed RNA polymerase II subunit RPB7, putative isoform 1
[Theobroma cacao] gi|508713999|gb|EOY05896.1|
DNA-directed RNA polymerase II subunit RPB7, putative
isoform 1 [Theobroma cacao] gi|508714000|gb|EOY05897.1|
DNA-directed RNA polymerase II subunit RPB7, putative
isoform 1 [Theobroma cacao]
Length = 190
Score = 62.4 bits (150), Expect = 6e-08
Identities = 30/57 (52%), Positives = 42/57 (73%)
Frame = +1
Query: 7 PFFLSNDMSRIEKNGVVCFSVFAVRWKEDKYRQFKILASIEGDSLGPVSLAGTDVIE 177
P F+S+D+S+IEK+ VVCF V AVRW R F++LAS+ DSLGP+SL +D ++
Sbjct: 134 PVFISDDLSKIEKDVVVCFLVLAVRWISAS-RDFELLASLNADSLGPISLPWSDEVD 189
>gb|EXB38410.1| DNA-directed RNA polymerase II subunit [Morus notabilis]
Length = 202
Score = 60.1 bits (144), Expect = 3e-07
Identities = 28/60 (46%), Positives = 42/60 (70%), Gaps = 3/60 (5%)
Frame = +1
Query: 7 PFFLSNDMSRIEKNGVVCFSVFAVRWKE---DKYRQFKILASIEGDSLGPVSLAGTDVIE 177
P F+SN+ ++IE VVCF V VRW E + +F +LA++EGDSLGP+SL+G+ ++
Sbjct: 142 PLFVSNEFAKIENGVVVCFMVLGVRWFENWGNVKNEFGVLATLEGDSLGPISLSGSGELD 201
>gb|EMJ24730.1| hypothetical protein PRUPE_ppa012042mg [Prunus persica]
Length = 186
Score = 57.8 bits (138), Expect = 1e-06
Identities = 28/53 (52%), Positives = 40/53 (75%), Gaps = 2/53 (3%)
Frame = +1
Query: 1 ENPFFLSNDMSRIEKNGVVCFSVFAVRW--KEDKYRQFKILASIEGDSLGPVS 153
E P FL +D++RIEK+ VV F VF VRW +ED ++F +LA+++GD LGPV+
Sbjct: 127 EKPVFLHDDLARIEKDVVVRFEVFGVRWMRREDITKEFMMLATLQGDLLGPVT 179
>ref|XP_006282711.1| hypothetical protein CARUB_v10005692mg, partial [Capsella rubella]
gi|482551416|gb|EOA15609.1| hypothetical protein
CARUB_v10005692mg, partial [Capsella rubella]
Length = 221
Score = 56.2 bits (134), Expect = 4e-06
Identities = 28/59 (47%), Positives = 42/59 (71%), Gaps = 3/59 (5%)
Frame = +1
Query: 1 ENPFFLSNDMSRIEKNGVVCFSVFAVRWKEDKYR---QFKILASIEGDSLGPVSLAGTD 168
E P+F +D+S+I VV F V AVR+KE ++ + +LA++EGD+LGP+SLAG+D
Sbjct: 159 EKPYFQKDDLSKIAVGVVVQFVVLAVRFKERPHKIRNDYYVLATLEGDTLGPISLAGSD 217
>ref|XP_006838851.1| hypothetical protein AMTR_s00002p00265350 [Amborella trichopoda]
gi|548841357|gb|ERN01420.1| hypothetical protein
AMTR_s00002p00265350 [Amborella trichopoda]
Length = 188
Score = 55.1 bits (131), Expect = 1e-05
Identities = 26/51 (50%), Positives = 39/51 (76%)
Frame = +1
Query: 1 ENPFFLSNDMSRIEKNGVVCFSVFAVRWKEDKYRQFKILASIEGDSLGPVS 153
ENP F+++ ++E++GVV F V A++W E + R+F +LAS+EGD LGPVS
Sbjct: 126 ENPIFVNDKNLKLERHGVVRFRVLALQWMEGQ-REFMLLASLEGDFLGPVS 175