BLASTX nr result
ID: Catharanthus22_contig00018475
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus22_contig00018475
(233 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAC28238.1| contains similarity to reverse trancriptase (Pfam... 107 2e-21
gb|AAK38381.1|AC079028_5 polyprotein, putative [Arabidopsis thal... 105 8e-21
gb|AAF19226.1|AC007505_2 Highly similar to Ta1-3 polyprotein [Ar... 103 2e-20
emb|CAA31653.1| polyprotein [Arabidopsis thaliana] 103 2e-20
emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis] 102 5e-20
dbj|BAA96887.1| copia-like retroelement pol polyprotein [Arabido... 101 9e-20
emb|CAA20201.1| putative transposable element [Arabidopsis thali... 100 3e-19
pir||S23319 hypothetical protein 2 - Arabidopsis thaliana retrot... 98 1e-18
gb|AAD32759.1| putative retroelement pol polyprotein [Arabidopsi... 97 2e-18
emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera] 97 2e-18
emb|CAN72567.1| hypothetical protein VITISV_044177 [Vitis vinifera] 97 2e-18
emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera] 97 2e-18
ref|XP_004509781.1| PREDICTED: uncharacterized protein LOC101498... 97 3e-18
emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera] 96 5e-18
gb|AAD17414.1| copia-like retroelement pol polyprotein [Arabidop... 96 5e-18
gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsi... 95 1e-17
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118... 94 1e-17
emb|CAB75481.1| copia-like polyprotein [Arabidopsis thaliana] 93 3e-17
emb|CAN60263.1| hypothetical protein VITISV_026496 [Vitis vinifera] 92 7e-17
gb|AAD23690.1| putative retroelement pol polyprotein [Arabidopsi... 92 9e-17
>gb|AAC28238.1| contains similarity to reverse trancriptase (Pfam: rvt.hmm, score:
19.54) and CCHC-type zinc fingers (Pfam: zf-CCHC.hmm,
score: 12.35) [Arabidopsis thaliana]
gi|7267184|emb|CAB77896.1| putative transposon protein
[Arabidopsis thaliana]
Length = 1104
Score = 107 bits (266), Expect = 2e-21
Identities = 46/75 (61%), Positives = 56/75 (74%)
Frame = +3
Query: 9 PTYGGNVYFLSVVDDFSRHVWVFLLKSKDQTFEKFSEWKRLAENQTGNKLKTIRTDNGLE 188
P+ G YFLS++DD SR VW+ LKSKD+TF+KF EWK + EN G K+KT+RTDNGLE
Sbjct: 416 PSISGKQYFLSIIDDKSRKVWLMFLKSKDETFDKFCEWKEIVENHVGKKVKTLRTDNGLE 475
Query: 189 FCNKKFADLCALHGI 233
FCN +F D CA GI
Sbjct: 476 FCNNRFNDYCAKTGI 490
>gb|AAK38381.1|AC079028_5 polyprotein, putative [Arabidopsis thaliana]
Length = 855
Score = 105 bits (261), Expect = 8e-21
Identities = 45/75 (60%), Positives = 57/75 (76%)
Frame = +3
Query: 9 PTYGGNVYFLSVVDDFSRHVWVFLLKSKDQTFEKFSEWKRLAENQTGNKLKTIRTDNGLE 188
P+ GN YFLS++DD SR VW++ L+SKD+TF+KF EWK L ENQT ++K +RTDNGLE
Sbjct: 194 PSMSGNKYFLSIIDDKSRKVWLYFLRSKDETFDKFCEWKELVENQTDKRVKCLRTDNGLE 253
Query: 189 FCNKKFADLCALHGI 233
FCN KF C +GI
Sbjct: 254 FCNIKFDSYCKKYGI 268
>gb|AAF19226.1|AC007505_2 Highly similar to Ta1-3 polyprotein [Arabidopsis thaliana]
Length = 1356
Score = 103 bits (258), Expect = 2e-20
Identities = 44/75 (58%), Positives = 55/75 (73%)
Frame = +3
Query: 9 PTYGGNVYFLSVVDDFSRHVWVFLLKSKDQTFEKFSEWKRLAENQTGNKLKTIRTDNGLE 188
P+ G YFLS++DD +R VW++ LKSKD+TF+KF EWK L ENQ K+K +RTDNGLE
Sbjct: 511 PSISGKQYFLSIIDDKTRKVWLYFLKSKDETFDKFCEWKSLVENQVNKKVKCLRTDNGLE 570
Query: 189 FCNKKFADLCALHGI 233
FCN +F C HGI
Sbjct: 571 FCNSRFDSYCKEHGI 585
>emb|CAA31653.1| polyprotein [Arabidopsis thaliana]
Length = 1291
Score = 103 bits (257), Expect = 2e-20
Identities = 44/75 (58%), Positives = 56/75 (74%)
Frame = +3
Query: 9 PTYGGNVYFLSVVDDFSRHVWVFLLKSKDQTFEKFSEWKRLAENQTGNKLKTIRTDNGLE 188
P+ GN YFLS++DD +R VW++ L+SKD+TF++F EWK L ENQ K+K +RTDNGLE
Sbjct: 521 PSLSGNKYFLSIIDDKTRKVWLYFLRSKDETFDRFCEWKELVENQQNKKVKCLRTDNGLE 580
Query: 189 FCNKKFADLCALHGI 233
FCN KF C HGI
Sbjct: 581 FCNLKFDAYCKEHGI 595
>emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]
Length = 1334
Score = 102 bits (254), Expect = 5e-20
Identities = 44/77 (57%), Positives = 57/77 (74%)
Frame = +3
Query: 3 KVPTYGGNVYFLSVVDDFSRHVWVFLLKSKDQTFEKFSEWKRLAENQTGNKLKTIRTDNG 182
+VP+ G YF+S++DD+SR VW+++LK KDQ EKF WK L ENQ+ KLK +RTDNG
Sbjct: 494 QVPSLSGGRYFMSLIDDYSRKVWIYILKIKDQALEKFKVWKSLVENQSDFKLKCLRTDNG 553
Query: 183 LEFCNKKFADLCALHGI 233
LEFC+K F + C HGI
Sbjct: 554 LEFCSKVFEEYCQKHGI 570
>dbj|BAA96887.1| copia-like retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1140
Score = 101 bits (252), Expect = 9e-20
Identities = 43/75 (57%), Positives = 55/75 (73%)
Frame = +3
Query: 9 PTYGGNVYFLSVVDDFSRHVWVFLLKSKDQTFEKFSEWKRLAENQTGNKLKTIRTDNGLE 188
P+ G YFLS++DD +R VW+ LK+KD+TF+KF EWK L ENQ K+K +RTDNGLE
Sbjct: 488 PSLSGKQYFLSIIDDKTRKVWLMFLKTKDETFDKFCEWKELVENQVNKKIKVLRTDNGLE 547
Query: 189 FCNKKFADLCALHGI 233
FCN KF + C +GI
Sbjct: 548 FCNLKFDEYCKKNGI 562
>emb|CAA20201.1| putative transposable element [Arabidopsis thaliana]
gi|7268932|emb|CAB79135.1| putative transposable element
[Arabidopsis thaliana]
Length = 1308
Score = 99.8 bits (247), Expect = 3e-19
Identities = 43/71 (60%), Positives = 53/71 (74%)
Frame = +3
Query: 21 GNVYFLSVVDDFSRHVWVFLLKSKDQTFEKFSEWKRLAENQTGNKLKTIRTDNGLEFCNK 200
G YFLS++DD SR VW+ LK+KD+TFE+F EWK L ENQ K+K +RTDNGLEFCN
Sbjct: 506 GKQYFLSIIDDKSRKVWLMFLKTKDETFERFCEWKELVENQVNKKVKILRTDNGLEFCNL 565
Query: 201 KFADLCALHGI 233
KF + C +GI
Sbjct: 566 KFDEFCKQNGI 576
>pir||S23319 hypothetical protein 2 - Arabidopsis thaliana retrotransposon Ta1-2
(strain Landsberg) (fragment) gi|16384|emb|CAA37924.1|
unnamed protein product [Arabidopsis thaliana]
Length = 1084
Score = 97.8 bits (242), Expect = 1e-18
Identities = 43/75 (57%), Positives = 55/75 (73%)
Frame = +3
Query: 9 PTYGGNVYFLSVVDDFSRHVWVFLLKSKDQTFEKFSEWKRLAENQTGNKLKTIRTDNGLE 188
P+ GN YFLS++DD +R VW++ L+SKD+TF++F E K L ENQ K+K +RTDNGLE
Sbjct: 421 PSLSGNKYFLSIIDDKTRKVWLYFLRSKDETFDRFCERKELVENQQNKKVKCLRTDNGLE 480
Query: 189 FCNKKFADLCALHGI 233
FCN KF C HGI
Sbjct: 481 FCNLKFDAYCKDHGI 495
>gb|AAD32759.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1356
Score = 97.4 bits (241), Expect = 2e-18
Identities = 41/68 (60%), Positives = 52/68 (76%)
Frame = +3
Query: 30 YFLSVVDDFSRHVWVFLLKSKDQTFEKFSEWKRLAENQTGNKLKTIRTDNGLEFCNKKFA 209
YF+S++DDF+R VWV+ +K+KD+ FEKF EW L ENQT ++KT+RTDNGLEFCNK F
Sbjct: 519 YFMSIIDDFTRKVWVYFMKTKDEAFEKFVEWVNLVENQTDRRVKTLRTDNGLEFCNKLFD 578
Query: 210 DLCALHGI 233
C GI
Sbjct: 579 GFCESIGI 586
>emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera]
Length = 1562
Score = 97.1 bits (240), Expect = 2e-18
Identities = 41/76 (53%), Positives = 55/76 (72%)
Frame = +3
Query: 6 VPTYGGNVYFLSVVDDFSRHVWVFLLKSKDQTFEKFSEWKRLAENQTGNKLKTIRTDNGL 185
V ++ G Y+++ +DDFSR VWV+ LK+KD+ F KF EWK + E +TG +KT+RTDNGL
Sbjct: 604 VESHSGCRYYVTFIDDFSRKVWVYFLKAKDEVFGKFKEWKTMVEKRTGKVVKTLRTDNGL 663
Query: 186 EFCNKKFADLCALHGI 233
EFCNK F + C GI
Sbjct: 664 EFCNKDFDEFCRKEGI 679
>emb|CAN72567.1| hypothetical protein VITISV_044177 [Vitis vinifera]
Length = 950
Score = 97.1 bits (240), Expect = 2e-18
Identities = 41/76 (53%), Positives = 55/76 (72%)
Frame = +3
Query: 6 VPTYGGNVYFLSVVDDFSRHVWVFLLKSKDQTFEKFSEWKRLAENQTGNKLKTIRTDNGL 185
V ++ G Y+++ +DDFSR VWV+ LK+KD+ F KF EWK + E +TG +KT+RTDNGL
Sbjct: 459 VESHSGCRYYVTFIDDFSRKVWVYFLKAKDEVFGKFKEWKTMVEKRTGKVVKTLRTDNGL 518
Query: 186 EFCNKKFADLCALHGI 233
EFCNK F + C GI
Sbjct: 519 EFCNKDFDEFCRKEGI 534
>emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]
Length = 1643
Score = 97.1 bits (240), Expect = 2e-18
Identities = 41/76 (53%), Positives = 55/76 (72%)
Frame = +3
Query: 6 VPTYGGNVYFLSVVDDFSRHVWVFLLKSKDQTFEKFSEWKRLAENQTGNKLKTIRTDNGL 185
V ++ G Y+++ +DDFSR VWV+ LK+KD+ F KF EWK + E +TG +KT+RTDNGL
Sbjct: 817 VESHSGCRYYVTFIDDFSRKVWVYFLKAKDEVFGKFKEWKTMVEKRTGKVVKTLRTDNGL 876
Query: 186 EFCNKKFADLCALHGI 233
EFCNK F + C GI
Sbjct: 877 EFCNKDFDEFCRKEGI 892
>ref|XP_004509781.1| PREDICTED: uncharacterized protein LOC101498326 [Cicer arietinum]
Length = 598
Score = 96.7 bits (239), Expect = 3e-18
Identities = 36/77 (46%), Positives = 58/77 (75%)
Frame = +3
Query: 3 KVPTYGGNVYFLSVVDDFSRHVWVFLLKSKDQTFEKFSEWKRLAENQTGNKLKTIRTDNG 182
++ ++ GN YF++ DD+SR +W++LLKSKD+TF+ F +WK + EN+ ++KT+RT NG
Sbjct: 249 RITSHRGNKYFITFPDDYSRKIWIYLLKSKDETFKTFKDWKSMVENRIDKRIKTLRTYNG 308
Query: 183 LEFCNKKFADLCALHGI 233
LEFC+++F C HG+
Sbjct: 309 LEFCSEEFTSFCKTHGV 325
>emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]
Length = 1208
Score = 95.9 bits (237), Expect = 5e-18
Identities = 42/77 (54%), Positives = 55/77 (71%)
Frame = +3
Query: 3 KVPTYGGNVYFLSVVDDFSRHVWVFLLKSKDQTFEKFSEWKRLAENQTGNKLKTIRTDNG 182
+VP+ GG YFL+++DD+SR VW++ LK+K +TF KF EWK L E QT K+K +RTDNG
Sbjct: 462 RVPSIGGARYFLTLIDDYSRKVWIYFLKNKSETFLKFKEWKILVETQTSRKVKKLRTDNG 521
Query: 183 LEFCNKKFADLCALHGI 233
LEF + F LC GI
Sbjct: 522 LEFLSNDFNSLCQKEGI 538
>gb|AAD17414.1| copia-like retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1166
Score = 95.9 bits (237), Expect = 5e-18
Identities = 42/72 (58%), Positives = 54/72 (75%)
Frame = +3
Query: 18 GGNVYFLSVVDDFSRHVWVFLLKSKDQTFEKFSEWKRLAENQTGNKLKTIRTDNGLEFCN 197
GG YF+S +DDFS+ VWV+ LK+KD+ + KF EWK+ ENQTG K+K +RTDNGLEF N
Sbjct: 398 GGCRYFVSFIDDFSKKVWVYFLKTKDEAYHKFREWKQAVENQTGKKIKYLRTDNGLEFYN 457
Query: 198 KKFADLCALHGI 233
+F +LC GI
Sbjct: 458 TQFDNLCKEDGI 469
>gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1335
Score = 94.7 bits (234), Expect = 1e-17
Identities = 39/72 (54%), Positives = 52/72 (72%)
Frame = +3
Query: 18 GGNVYFLSVVDDFSRHVWVFLLKSKDQTFEKFSEWKRLAENQTGNKLKTIRTDNGLEFCN 197
G + YF+S VDD+SR VW++ L+ KD+ FEKF EWK++ ENQ+ K+K +RTDNGLE+CN
Sbjct: 491 GNSQYFISFVDDYSRKVWIYFLRKKDEAFEKFVEWKKMVENQSDRKVKKLRTDNGLEYCN 550
Query: 198 KKFADLCALHGI 233
F C GI
Sbjct: 551 HYFEKFCKEEGI 562
>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
copia LTR rider [Solanum lycopersicum]
Length = 1307
Score = 94.4 bits (233), Expect = 1e-17
Identities = 40/77 (51%), Positives = 55/77 (71%)
Frame = +3
Query: 3 KVPTYGGNVYFLSVVDDFSRHVWVFLLKSKDQTFEKFSEWKRLAENQTGNKLKTIRTDNG 182
+V + GG +F+S++DD+SR WV+++K K + F+KF EWK L ENQTG K+K +RTDNG
Sbjct: 482 RVESLGGCRFFVSIIDDYSRMTWVYMMKHKSEAFQKFKEWKILMENQTGKKIKRLRTDNG 541
Query: 183 LEFCNKKFADLCALHGI 233
LEFC +F C GI
Sbjct: 542 LEFCWSEFDQFCKDEGI 558
>emb|CAB75481.1| copia-like polyprotein [Arabidopsis thaliana]
Length = 1363
Score = 93.2 bits (230), Expect = 3e-17
Identities = 42/76 (55%), Positives = 54/76 (71%), Gaps = 1/76 (1%)
Frame = +3
Query: 6 VPTYGGNV-YFLSVVDDFSRHVWVFLLKSKDQTFEKFSEWKRLAENQTGNKLKTIRTDNG 182
VP GN YF+S +DD++R VWV+ LK+KD+ FEKF W L ENQ+G ++KT+RTDNG
Sbjct: 517 VPMSLGNCQYFISFIDDYTRKVWVYFLKTKDEAFEKFVSWISLVENQSGERVKTLRTDNG 576
Query: 183 LEFCNKKFADLCALHG 230
LEFCN+ F C G
Sbjct: 577 LEFCNRMFDGFCEEKG 592
>emb|CAN60263.1| hypothetical protein VITISV_026496 [Vitis vinifera]
Length = 1842
Score = 92.0 bits (227), Expect = 7e-17
Identities = 42/79 (53%), Positives = 57/79 (72%), Gaps = 2/79 (2%)
Frame = +3
Query: 3 KVPTYGGNVYFLSVVDDFSRHVWVFLLKSKDQ--TFEKFSEWKRLAENQTGNKLKTIRTD 176
+V T+GGN YFLS++DD+SR VW++LL +KD+ + EWK L ENQT ++K +RTD
Sbjct: 1415 RVSTHGGNRYFLSLIDDYSRKVWLYLLNTKDEHTVLTEVKEWKALVENQTNKRVKVLRTD 1474
Query: 177 NGLEFCNKKFADLCALHGI 233
NGLEFCN++F L GI
Sbjct: 1475 NGLEFCNEQFEMLYKNQGI 1493
>gb|AAD23690.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1333
Score = 91.7 bits (226), Expect = 9e-17
Identities = 37/68 (54%), Positives = 52/68 (76%)
Frame = +3
Query: 30 YFLSVVDDFSRHVWVFLLKSKDQTFEKFSEWKRLAENQTGNKLKTIRTDNGLEFCNKKFA 209
YF+S +DD++R V ++ LK+KD+ F+KF EW L ENQT ++KT+RTDNGLEFCN+ F
Sbjct: 497 YFISFIDDYTRKVRIYFLKTKDEAFDKFVEWANLVENQTDKRIKTLRTDNGLEFCNRSFD 556
Query: 210 DLCALHGI 233
+ C+ GI
Sbjct: 557 EFCSQKGI 564