BLASTX nr result
ID: Catharanthus22_contig00018455
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus22_contig00018455
(252 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAE03834.3| OSJNBb0013J13.11 [Oryza sativa Japonica Group] 110 1e-22
gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subc... 110 2e-22
emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera] 109 3e-22
gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group... 107 1e-21
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc... 106 3e-21
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc... 106 3e-21
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-... 106 3e-21
emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group] 106 4e-21
gb|AAD17414.1| copia-like retroelement pol polyprotein [Arabidop... 105 8e-21
emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera] 104 1e-20
emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis] 104 1e-20
gb|ABA96718.1| retrotransposon protein, putative, Ty1-copia subc... 103 2e-20
gb|AAL91607.1|AC099400_13 Putative pol polyprotein [Oryza sativa... 102 4e-20
dbj|BAB02145.1| copia-like retroelement pol polyprotein-like [Ar... 100 2e-19
dbj|BAB09923.1| copia-like retrotransposable element [Arabidopsi... 100 2e-19
gb|ABA91380.1| retrotransposon protein, putative, Ty1-copia subc... 100 3e-19
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-... 100 3e-19
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118... 100 3e-19
gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group] 100 3e-19
gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa] 99 8e-19
>emb|CAE03834.3| OSJNBb0013J13.11 [Oryza sativa Japonica Group]
Length = 576
Score = 110 bits (276), Expect = 1e-22
Identities = 51/81 (62%), Positives = 63/81 (77%)
Frame = +3
Query: 9 SPNRSLWLHAMEEEMSSLHKNKTWILVQKPSKQKLIDCKWIFKIKEPESANEPPRFKARL 188
S +R W+ AM+EEM SL KN TW LV P ++K + CKWIFK KE S +EPPRFKARL
Sbjct: 148 SGDRENWISAMQEEMQSLEKNGTWKLVHLPKQKKPVHCKWIFKRKEGLSPSEPPRFKARL 207
Query: 189 VAKGFSQVEGIDFNEIFSPVV 251
VAKGFSQ+ G+D+N++FSPVV
Sbjct: 208 VAKGFSQIAGVDYNDVFSPVV 228
>gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1278
Score = 110 bits (275), Expect = 2e-22
Identities = 51/81 (62%), Positives = 63/81 (77%)
Frame = +3
Query: 9 SPNRSLWLHAMEEEMSSLHKNKTWILVQKPSKQKLIDCKWIFKIKEPESANEPPRFKARL 188
S +R W+ AM+EEM SL KN TW LV P ++K + CKWIFK KE S +EPPRFKARL
Sbjct: 815 SGDREKWISAMQEEMQSLEKNGTWELVHLPKQKKPVRCKWIFKRKEGLSPSEPPRFKARL 874
Query: 189 VAKGFSQVEGIDFNEIFSPVV 251
VAKGFSQ+ G+D+N++FSPVV
Sbjct: 875 VAKGFSQIVGVDYNDVFSPVV 895
>emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera]
Length = 1562
Score = 109 bits (273), Expect = 3e-22
Identities = 49/83 (59%), Positives = 66/83 (79%)
Frame = +3
Query: 3 LKSPNRSLWLHAMEEEMSSLHKNKTWILVQKPSKQKLIDCKWIFKIKEPESANEPPRFKA 182
++S + WL +M++EM+SL KN+TW LV P K +DCKW+FKIK+ S +EPP++K+
Sbjct: 921 MESKDSKKWLSSMDDEMASLRKNQTWELVPLPEGVKPVDCKWLFKIKDGISXDEPPKYKS 980
Query: 183 RLVAKGFSQVEGIDFNEIFSPVV 251
RLVAKGFSQ EGID+NE+FSPVV
Sbjct: 981 RLVAKGFSQKEGIDYNEVFSPVV 1003
>gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group]
gi|53370655|gb|AAU89150.1| integrase core domain
containing protein [Oryza sativa Japonica Group]
gi|108710286|gb|ABF98081.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 1322
Score = 107 bits (268), Expect = 1e-21
Identities = 49/81 (60%), Positives = 62/81 (76%)
Frame = +3
Query: 9 SPNRSLWLHAMEEEMSSLHKNKTWILVQKPSKQKLIDCKWIFKIKEPESANEPPRFKARL 188
S +R W+ A++EEM SL KN TW LV P ++K + CKWIFK KE S +EPPRFK RL
Sbjct: 815 SGDREKWISAIQEEMQSLEKNGTWELVHLPKQKKPVRCKWIFKRKEGLSPSEPPRFKVRL 874
Query: 189 VAKGFSQVEGIDFNEIFSPVV 251
VAKGFSQ+ G+D+N++FSPVV
Sbjct: 875 VAKGFSQIAGVDYNDVFSPVV 895
>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 106 bits (265), Expect = 3e-21
Identities = 46/75 (61%), Positives = 60/75 (80%)
Frame = +3
Query: 27 WLHAMEEEMSSLHKNKTWILVQKPSKQKLIDCKWIFKIKEPESANEPPRFKARLVAKGFS 206
W+ AM EEM SL KN TW +V P K+K I CKWIFK KE S++EPP++KARLVA+G+S
Sbjct: 832 WISAMHEEMQSLEKNSTWEVVPLPKKKKTISCKWIFKRKEGLSSSEPPKYKARLVARGYS 891
Query: 207 QVEGIDFNEIFSPVV 251
Q+ G+D+N++FSPVV
Sbjct: 892 QIPGVDYNDVFSPVV 906
>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 106 bits (265), Expect = 3e-21
Identities = 46/75 (61%), Positives = 60/75 (80%)
Frame = +3
Query: 27 WLHAMEEEMSSLHKNKTWILVQKPSKQKLIDCKWIFKIKEPESANEPPRFKARLVAKGFS 206
W+ AM EEM SL KN TW +V P K+K I CKWIFK KE S++EPP++KARLVA+G+S
Sbjct: 832 WISAMHEEMQSLEKNSTWEVVPLPKKKKTISCKWIFKRKEGLSSSEPPKYKARLVARGYS 891
Query: 207 QVEGIDFNEIFSPVV 251
Q+ G+D+N++FSPVV
Sbjct: 892 QIPGVDYNDVFSPVV 906
>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group] gi|77549942|gb|ABA92739.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 1373
Score = 106 bits (265), Expect = 3e-21
Identities = 46/75 (61%), Positives = 60/75 (80%)
Frame = +3
Query: 27 WLHAMEEEMSSLHKNKTWILVQKPSKQKLIDCKWIFKIKEPESANEPPRFKARLVAKGFS 206
W+ AM EEM SL KN TW +V P K+K I CKWIFK KE S++EPP++KARLVA+G+S
Sbjct: 832 WISAMHEEMQSLEKNSTWEVVPLPKKKKTISCKWIFKRKEGLSSSEPPKYKARLVARGYS 891
Query: 207 QVEGIDFNEIFSPVV 251
Q+ G+D+N++FSPVV
Sbjct: 892 QIPGVDYNDVFSPVV 906
>emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]
Length = 1335
Score = 106 bits (264), Expect = 4e-21
Identities = 46/75 (61%), Positives = 59/75 (78%)
Frame = +3
Query: 27 WLHAMEEEMSSLHKNKTWILVQKPSKQKLIDCKWIFKIKEPESANEPPRFKARLVAKGFS 206
W+ AM EEM SL KN TW +V P K+K I CKWIFK KE S +EPP++KARLVA+G+S
Sbjct: 834 WISAMHEEMQSLEKNSTWEVVPLPKKKKTISCKWIFKRKEALSLSEPPKYKARLVARGYS 893
Query: 207 QVEGIDFNEIFSPVV 251
Q+ G+D+N++FSPVV
Sbjct: 894 QIPGVDYNDVFSPVV 908
>gb|AAD17414.1| copia-like retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1166
Score = 105 bits (261), Expect = 8e-21
Identities = 52/83 (62%), Positives = 61/83 (73%)
Frame = +3
Query: 3 LKSPNRSLWLHAMEEEMSSLHKNKTWILVQKPSKQKLIDCKWIFKIKEPESANEPPRFKA 182
LKS R W +AM+EEM S K+ TW L++KP KQKLI CKWIFK+K E R+KA
Sbjct: 740 LKSSKRKQWENAMKEEMDSHKKSHTWDLIEKPEKQKLIGCKWIFKLKPGIPGVEKQRYKA 799
Query: 183 RLVAKGFSQVEGIDFNEIFSPVV 251
RLVAKGFSQ EGID+NE+FS VV
Sbjct: 800 RLVAKGFSQQEGIDYNEVFSLVV 822
>emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]
Length = 1208
Score = 104 bits (260), Expect = 1e-20
Identities = 48/83 (57%), Positives = 61/83 (73%)
Frame = +3
Query: 3 LKSPNRSLWLHAMEEEMSSLHKNKTWILVQKPSKQKLIDCKWIFKIKEPESANEPPRFKA 182
+ S W+ A++EEM SL KN+TW LV KP +K++ KW+FK K+ NE PR+KA
Sbjct: 778 INSNEADQWVKAIQEEMDSLRKNETWELVTKPKDRKVVGSKWVFKRKQGTLGNEAPRYKA 837
Query: 183 RLVAKGFSQVEGIDFNEIFSPVV 251
RLVAKGFSQ EG+D+NEIFSPVV
Sbjct: 838 RLVAKGFSQKEGVDYNEIFSPVV 860
>emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]
Length = 1334
Score = 104 bits (260), Expect = 1e-20
Identities = 47/83 (56%), Positives = 63/83 (75%)
Frame = +3
Query: 3 LKSPNRSLWLHAMEEEMSSLHKNKTWILVQKPSKQKLIDCKWIFKIKEPESANEPPRFKA 182
++S + WL AM++EM SL +N+TW L+ P ++LI+CKWIFK E EPP++KA
Sbjct: 821 MESVHCDKWLEAMQDEMESLQRNQTWTLIPNPGNKRLINCKWIFKRNEGIPDVEPPKYKA 880
Query: 183 RLVAKGFSQVEGIDFNEIFSPVV 251
RLVA+GF+Q EG+DFNEIFSPVV
Sbjct: 881 RLVARGFTQREGVDFNEIFSPVV 903
>gb|ABA96718.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1131
Score = 103 bits (258), Expect = 2e-20
Identities = 48/81 (59%), Positives = 60/81 (74%)
Frame = +3
Query: 9 SPNRSLWLHAMEEEMSSLHKNKTWILVQKPSKQKLIDCKWIFKIKEPESANEPPRFKARL 188
S +R W+ AM+ EM L KN TW LV P ++K + CKWIFK KE S +EPPRFKA L
Sbjct: 706 SGDREKWISAMQGEMQPLEKNGTWELVHLPKQKKPVRCKWIFKRKEGLSPSEPPRFKATL 765
Query: 189 VAKGFSQVEGIDFNEIFSPVV 251
VAKGFSQ+ G+D+N++FSPVV
Sbjct: 766 VAKGFSQIAGVDYNDVFSPVV 786
>gb|AAL91607.1|AC099400_13 Putative pol polyprotein [Oryza sativa Japonica Group]
gi|18542925|gb|AAL75759.1| Putative pol polyprotein
[Oryza sativa Japonica Group] gi|31429763|gb|AAP51772.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 1005
Score = 102 bits (255), Expect = 4e-20
Identities = 47/72 (65%), Positives = 58/72 (80%)
Frame = +3
Query: 36 AMEEEMSSLHKNKTWILVQKPSKQKLIDCKWIFKIKEPESANEPPRFKARLVAKGFSQVE 215
AM+EEM SL KN TW LV P ++K + CKWIFK KE S +EPPRFKA+LVAKGFSQ+
Sbjct: 508 AMQEEMQSLEKNGTWELVHLPKQKKPVRCKWIFKRKEGLSPSEPPRFKAKLVAKGFSQIA 567
Query: 216 GIDFNEIFSPVV 251
G+D+N++FSPVV
Sbjct: 568 GVDYNDVFSPVV 579
>dbj|BAB02145.1| copia-like retroelement pol polyprotein-like [Arabidopsis thaliana]
Length = 348
Score = 100 bits (249), Expect = 2e-19
Identities = 49/83 (59%), Positives = 58/83 (69%)
Frame = +3
Query: 3 LKSPNRSLWLHAMEEEMSSLHKNKTWILVQKPSKQKLIDCKWIFKIKEPESANEPPRFKA 182
+K R W AM+EEM S K+ TW L++KP KQKLI CKWIFK+K E R+K
Sbjct: 212 MKRSKRKQWESAMKEEMDSHQKSHTWDLIEKPEKQKLIGCKWIFKLKPGIPGLEKQRYKV 271
Query: 183 RLVAKGFSQVEGIDFNEIFSPVV 251
RLVAKGFSQ EGID+NE+FS VV
Sbjct: 272 RLVAKGFSQQEGIDYNEVFSLVV 294
>dbj|BAB09923.1| copia-like retrotransposable element [Arabidopsis thaliana]
Length = 1342
Score = 100 bits (249), Expect = 2e-19
Identities = 48/83 (57%), Positives = 58/83 (69%)
Frame = +3
Query: 3 LKSPNRSLWLHAMEEEMSSLHKNKTWILVQKPSKQKLIDCKWIFKIKEPESANEPPRFKA 182
++SP W A EEM S+ KN TW ++ KP +++I CKWIFK K EPPR+KA
Sbjct: 830 MRSPECEKWKQATIEEMDSMKKNDTWDVIDKPEGKRVIGCKWIFKRKAGIPGVEPPRYKA 889
Query: 183 RLVAKGFSQVEGIDFNEIFSPVV 251
RLVAKGFSQ EGID+ EIFSPVV
Sbjct: 890 RLVAKGFSQREGIDYQEIFSPVV 912
>gb|ABA91380.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1138
Score = 100 bits (248), Expect = 3e-19
Identities = 46/75 (61%), Positives = 57/75 (76%)
Frame = +3
Query: 27 WLHAMEEEMSSLHKNKTWILVQKPSKQKLIDCKWIFKIKEPESANEPPRFKARLVAKGFS 206
W+ AM +EM SL KN TW LV+ P ++KLI CKWIFK KE S + R+KA LVAKG+S
Sbjct: 666 WITAMHDEMDSLEKNHTWKLVKLPKEKKLIHCKWIFKRKEGMSPTDEARYKAMLVAKGYS 725
Query: 207 QVEGIDFNEIFSPVV 251
Q+ GIDFN++FSPVV
Sbjct: 726 QIPGIDFNDVFSPVV 740
>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group] gi|77548751|gb|ABA91548.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 2340
Score = 99.8 bits (247), Expect = 3e-19
Identities = 45/75 (60%), Positives = 59/75 (78%)
Frame = +3
Query: 27 WLHAMEEEMSSLHKNKTWILVQKPSKQKLIDCKWIFKIKEPESANEPPRFKARLVAKGFS 206
W+ AM +EM SL KN TW LV+ P ++K I CKWIFK KE S+++ R+KARL+AKG+S
Sbjct: 1038 WITAMHDEMESLEKNHTWELVKLPKEKKPIRCKWIFKRKEGISSSDEARYKARLIAKGYS 1097
Query: 207 QVEGIDFNEIFSPVV 251
Q+ GIDFN++FSPVV
Sbjct: 1098 QIPGIDFNDVFSPVV 1112
>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
copia LTR rider [Solanum lycopersicum]
Length = 1307
Score = 99.8 bits (247), Expect = 3e-19
Identities = 47/81 (58%), Positives = 61/81 (75%)
Frame = +3
Query: 9 SPNRSLWLHAMEEEMSSLHKNKTWILVQKPSKQKLIDCKWIFKIKEPESANEPPRFKARL 188
S + W AM +EM SLHKN+TW LV +PS +K+I CKW+FK KE S E ++KAR+
Sbjct: 800 SSDSEKWFAAMGDEMESLHKNQTWDLVIQPSGRKIITCKWVFKKKEGISPAEGVKYKARV 859
Query: 189 VAKGFSQVEGIDFNEIFSPVV 251
VA+GF+Q EG+D+NEIFSPVV
Sbjct: 860 VARGFNQREGVDYNEIFSPVV 880
>gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1243
Score = 99.8 bits (247), Expect = 3e-19
Identities = 46/75 (61%), Positives = 58/75 (77%)
Frame = +3
Query: 27 WLHAMEEEMSSLHKNKTWILVQKPSKQKLIDCKWIFKIKEPESANEPPRFKARLVAKGFS 206
W+ AM +EM SL KN TW LV+ P ++K I CKWIFK KE S ++ R+KARLVAKG+S
Sbjct: 803 WITAMHDEMESLEKNHTWELVKLPKEKKPIRCKWIFKRKEGMSPSDEARYKARLVAKGYS 862
Query: 207 QVEGIDFNEIFSPVV 251
Q+ GIDFN++FSPVV
Sbjct: 863 QIPGIDFNDVFSPVV 877
>gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]
Length = 1297
Score = 98.6 bits (244), Expect = 8e-19
Identities = 45/83 (54%), Positives = 61/83 (73%)
Frame = +3
Query: 3 LKSPNRSLWLHAMEEEMSSLHKNKTWILVQKPSKQKLIDCKWIFKIKEPESANEPPRFKA 182
++S + W+ AM EEM SLHKN W LV KP ++KL+ CKW+F+ KE ++ +KA
Sbjct: 789 IESVESAGWIGAMTEEMESLHKNSVWELVPKPKERKLVGCKWVFRKKEGIHEDDAITYKA 848
Query: 183 RLVAKGFSQVEGIDFNEIFSPVV 251
RLVAKG+SQ EG+D++EIFSPVV
Sbjct: 849 RLVAKGYSQKEGVDYDEIFSPVV 871