BLASTX nr result
ID: Catharanthus22_contig00018454
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus22_contig00018454
(251 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera] 75 8e-15
emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis] 73 1e-14
emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera] 72 2e-14
gb|AAD17414.1| copia-like retroelement pol polyprotein [Arabidop... 73 2e-14
gb|AAC62132.1| copia-like retroelement pol polyprotein [Arabidop... 70 7e-14
emb|CAE03834.3| OSJNBb0013J13.11 [Oryza sativa Japonica Group] 81 1e-13
gb|AAD39270.1|AC007203_2 Similar to reverse trancriptase [Arabid... 67 4e-13
gb|AFB73911.1| polyprotein [Citrus sinensis] 61 6e-13
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc... 79 6e-13
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc... 79 6e-13
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-... 79 6e-13
dbj|BAA11674.1| unnamed protein product [Nicotiana tabacum] 64 7e-13
emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group] 79 8e-13
gb|AAD32759.1| putative retroelement pol polyprotein [Arabidopsi... 67 1e-12
gb|AFB73912.1| polyprotein [Citrus sinensis] 61 1e-12
gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus] 62 2e-12
gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subc... 77 2e-12
emb|CAN74382.1| hypothetical protein VITISV_007945 [Vitis vinifera] 67 2e-12
gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa] 65 3e-12
ref|XP_003216126.1| PREDICTED: copia protein-like [Anolis caroli... 58 3e-12
>emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera]
Length = 1562
Score = 75.5 bits (184), Expect(2) = 8e-15
Identities = 32/48 (66%), Positives = 42/48 (87%)
Frame = +2
Query: 107 KLINCKWIFKIKEPESANEPPRFKARLVVKGFSQVEGIDFNEIFSPVV 250
K ++CKW+FKIK+ S +EPP++K+RLV KGFSQ EGID+NE+FSPVV
Sbjct: 956 KPVDCKWLFKIKDGISXDEPPKYKSRLVAKGFSQKEGIDYNEVFSPVV 1003
Score = 30.0 bits (66), Expect(2) = 8e-15
Identities = 13/33 (39%), Positives = 23/33 (69%)
Frame = +3
Query: 3 LKSPNRSLWLYAMEEEISSLHKNKT*ILVQKPQ 101
++S + WL +M++E++SL KN+T LV P+
Sbjct: 921 MESKDSKKWLSSMDDEMASLRKNQTWELVPLPE 953
>emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]
Length = 1334
Score = 72.8 bits (177), Expect(2) = 1e-14
Identities = 33/49 (67%), Positives = 40/49 (81%)
Frame = +2
Query: 104 QKLINCKWIFKIKEPESANEPPRFKARLVVKGFSQVEGIDFNEIFSPVV 250
++LINCKWIFK E EPP++KARLV +GF+Q EG+DFNEIFSPVV
Sbjct: 855 KRLINCKWIFKRNEGIPDVEPPKYKARLVARGFTQREGVDFNEIFSPVV 903
Score = 32.3 bits (72), Expect(2) = 1e-14
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +3
Query: 3 LKSPNRSLWLYAMEEEISSLHKNKT*ILVQKPQNK 107
++S + WL AM++E+ SL +N+T L+ P NK
Sbjct: 821 MESVHCDKWLEAMQDEMESLQRNQTWTLIPNPGNK 855
>emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]
Length = 1208
Score = 72.4 bits (176), Expect(2) = 2e-14
Identities = 32/54 (59%), Positives = 41/54 (75%)
Frame = +2
Query: 89 SKTSKQKLINCKWIFKIKEPESANEPPRFKARLVVKGFSQVEGIDFNEIFSPVV 250
+K +K++ KW+FK K+ NE PR+KARLV KGFSQ EG+D+NEIFSPVV
Sbjct: 807 TKPKDRKVVGSKWVFKRKQGTLGNEAPRYKARLVAKGFSQKEGVDYNEIFSPVV 860
Score = 31.6 bits (70), Expect(2) = 2e-14
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +3
Query: 3 LKSPNRSLWLYAMEEEISSLHKNKT*ILVQKPQNK 107
+ S W+ A++EE+ SL KN+T LV KP+++
Sbjct: 778 INSNEADQWVKAIQEEMDSLRKNETWELVTKPKDR 812
>gb|AAD17414.1| copia-like retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1166
Score = 72.8 bits (177), Expect(2) = 2e-14
Identities = 36/57 (63%), Positives = 40/57 (70%)
Frame = +2
Query: 80 DSCSKTSKQKLINCKWIFKIKEPESANEPPRFKARLVVKGFSQVEGIDFNEIFSPVV 250
D K KQKLI CKWIFK+K E R+KARLV KGFSQ EGID+NE+FS VV
Sbjct: 766 DLIEKPEKQKLIGCKWIFKLKPGIPGVEKQRYKARLVAKGFSQQEGIDYNEVFSLVV 822
Score = 31.2 bits (69), Expect(2) = 2e-14
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +3
Query: 3 LKSPNRSLWLYAMEEEISSLHKNKT*ILVQKPQNK 107
LKS R W AM+EE+ S K+ T L++KP+ +
Sbjct: 740 LKSSKRKQWENAMKEEMDSHKKSHTWDLIEKPEKQ 774
>gb|AAC62132.1| copia-like retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1137
Score = 69.7 bits (169), Expect(2) = 7e-14
Identities = 34/49 (69%), Positives = 37/49 (75%)
Frame = +2
Query: 104 QKLINCKWIFKIKEPESANEPPRFKARLVVKGFSQVEGIDFNEIFSPVV 250
QK I CKW+FK K E PRFKARLVVKG+SQ EGID+ EIFSPVV
Sbjct: 675 QKPIGCKWVFKRKSGIVGVEKPRFKARLVVKGYSQKEGIDYQEIFSPVV 723
Score = 32.7 bits (73), Expect(2) = 7e-14
Identities = 15/33 (45%), Positives = 22/33 (66%)
Frame = +3
Query: 3 LKSPNRSLWLYAMEEEISSLHKNKT*ILVQKPQ 101
L+ + +WL A++EEI SL KN T +LV + Q
Sbjct: 641 LQDSDYKMWLKAVDEEIESLLKNNTWVLVNRDQ 673
>emb|CAE03834.3| OSJNBb0013J13.11 [Oryza sativa Japonica Group]
Length = 576
Score = 81.3 bits (199), Expect = 1e-13
Identities = 41/83 (49%), Positives = 54/83 (65%), Gaps = 9/83 (10%)
Frame = +2
Query: 29 VVCYGRGNILSSQKQNLDSCSKTSKQKLIN---------CKWIFKIKEPESANEPPRFKA 181
VV R N +S+ ++ + S K KL++ CKWIFK KE S +EPPRFKA
Sbjct: 146 VVSGDRENWISAMQEEMQSLEKNGTWKLVHLPKQKKPVHCKWIFKRKEGLSPSEPPRFKA 205
Query: 182 RLVVKGFSQVEGIDFNEIFSPVV 250
RLV KGFSQ+ G+D+N++FSPVV
Sbjct: 206 RLVAKGFSQIAGVDYNDVFSPVV 228
>gb|AAD39270.1|AC007203_2 Similar to reverse trancriptase [Arabidopsis thaliana]
Length = 953
Score = 67.4 bits (163), Expect(2) = 4e-13
Identities = 33/53 (62%), Positives = 37/53 (69%)
Frame = +2
Query: 92 KTSKQKLINCKWIFKIKEPESANEPPRFKARLVVKGFSQVEGIDFNEIFSPVV 250
+ QK I CKW+FK K + E PRFKARLV KG+SQ EGI F EIFSPVV
Sbjct: 485 RNKSQKPIGCKWVFKRKAGIAGVEKPRFKARLVTKGYSQKEGIYFQEIFSPVV 537
Score = 32.3 bits (72), Expect(2) = 4e-13
Identities = 15/35 (42%), Positives = 24/35 (68%)
Frame = +3
Query: 3 LKSPNRSLWLYAMEEEISSLHKNKT*ILVQKPQNK 107
L+ + WL A +EEI SL KNKT +LV++ +++
Sbjct: 455 LQDSDSGKWLEAADEEIQSLIKNKTWVLVERNKSQ 489
>gb|AFB73911.1| polyprotein [Citrus sinensis]
Length = 1309
Score = 60.8 bits (146), Expect(2) = 6e-13
Identities = 29/49 (59%), Positives = 39/49 (79%)
Frame = +2
Query: 104 QKLINCKWIFKIKEPESANEPPRFKARLVVKGFSQVEGIDFNEIFSPVV 250
+K I KW++KIK + ++ R++ARLVVKG++Q EGIDFNEIFSPVV
Sbjct: 833 RKAIGNKWVYKIKR-DGNDQVERYRARLVVKGYAQKEGIDFNEIFSPVV 880
Score = 38.5 bits (88), Expect(2) = 6e-13
Identities = 18/35 (51%), Positives = 25/35 (71%)
Frame = +3
Query: 3 LKSPNRSLWLYAMEEEISSLHKNKT*ILVQKPQNK 107
L S + +LW+ AM+EEI +LHKNKT LV P+ +
Sbjct: 799 LNSSDVALWMTAMQEEIEALHKNKTWELVPLPRGR 833
>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 79.0 bits (193), Expect = 6e-13
Identities = 38/83 (45%), Positives = 55/83 (66%), Gaps = 9/83 (10%)
Frame = +2
Query: 29 VVCYGRGNILSSQKQNLDSCSKTS---------KQKLINCKWIFKIKEPESANEPPRFKA 181
V C N +S+ + + S K S K+K I+CKWIFK KE S++EPP++KA
Sbjct: 824 VRCGDSENWISAMHEEMQSLEKNSTWEVVPLPKKKKTISCKWIFKRKEGLSSSEPPKYKA 883
Query: 182 RLVVKGFSQVEGIDFNEIFSPVV 250
RLV +G+SQ+ G+D+N++FSPVV
Sbjct: 884 RLVARGYSQIPGVDYNDVFSPVV 906
>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 79.0 bits (193), Expect = 6e-13
Identities = 38/83 (45%), Positives = 55/83 (66%), Gaps = 9/83 (10%)
Frame = +2
Query: 29 VVCYGRGNILSSQKQNLDSCSKTS---------KQKLINCKWIFKIKEPESANEPPRFKA 181
V C N +S+ + + S K S K+K I+CKWIFK KE S++EPP++KA
Sbjct: 824 VRCGDSENWISAMHEEMQSLEKNSTWEVVPLPKKKKTISCKWIFKRKEGLSSSEPPKYKA 883
Query: 182 RLVVKGFSQVEGIDFNEIFSPVV 250
RLV +G+SQ+ G+D+N++FSPVV
Sbjct: 884 RLVARGYSQIPGVDYNDVFSPVV 906
>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group] gi|77549942|gb|ABA92739.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 1373
Score = 79.0 bits (193), Expect = 6e-13
Identities = 38/83 (45%), Positives = 55/83 (66%), Gaps = 9/83 (10%)
Frame = +2
Query: 29 VVCYGRGNILSSQKQNLDSCSKTS---------KQKLINCKWIFKIKEPESANEPPRFKA 181
V C N +S+ + + S K S K+K I+CKWIFK KE S++EPP++KA
Sbjct: 824 VRCGDSENWISAMHEEMQSLEKNSTWEVVPLPKKKKTISCKWIFKRKEGLSSSEPPKYKA 883
Query: 182 RLVVKGFSQVEGIDFNEIFSPVV 250
RLV +G+SQ+ G+D+N++FSPVV
Sbjct: 884 RLVARGYSQIPGVDYNDVFSPVV 906
>dbj|BAA11674.1| unnamed protein product [Nicotiana tabacum]
Length = 1338
Score = 63.5 bits (153), Expect(2) = 7e-13
Identities = 31/49 (63%), Positives = 39/49 (79%)
Frame = +2
Query: 104 QKLINCKWIFKIKEPESANEPPRFKARLVVKGFSQVEGIDFNEIFSPVV 250
++ + KW+FK+K E N PRFKARLVVKGF+Q +GIDF+EIFSPVV
Sbjct: 853 KRALKNKWVFKMKHDEH-NSLPRFKARLVVKGFNQRKGIDFDEIFSPVV 900
Score = 35.4 bits (80), Expect(2) = 7e-13
Identities = 15/31 (48%), Positives = 23/31 (74%)
Frame = +3
Query: 15 NRSLWLYAMEEEISSLHKNKT*ILVQKPQNK 107
++ W+ AM++EI SLH+NKT LV+ P+ K
Sbjct: 823 HKEKWIEAMQDEIKSLHENKTFELVKLPKGK 853
>emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]
Length = 1335
Score = 78.6 bits (192), Expect = 8e-13
Identities = 38/83 (45%), Positives = 54/83 (65%), Gaps = 9/83 (10%)
Frame = +2
Query: 29 VVCYGRGNILSSQKQNLDSCSKTS---------KQKLINCKWIFKIKEPESANEPPRFKA 181
V C N +S+ + + S K S K+K I+CKWIFK KE S +EPP++KA
Sbjct: 826 VRCGDSENWISAMHEEMQSLEKNSTWEVVPLPKKKKTISCKWIFKRKEALSLSEPPKYKA 885
Query: 182 RLVVKGFSQVEGIDFNEIFSPVV 250
RLV +G+SQ+ G+D+N++FSPVV
Sbjct: 886 RLVARGYSQIPGVDYNDVFSPVV 908
>gb|AAD32759.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1356
Score = 66.6 bits (161), Expect(2) = 1e-12
Identities = 30/54 (55%), Positives = 40/54 (74%)
Frame = +2
Query: 89 SKTSKQKLINCKWIFKIKEPESANEPPRFKARLVVKGFSQVEGIDFNEIFSPVV 250
++ Q++I C+WIFK K E PRFKARLV KG++Q EGID++EIF+PVV
Sbjct: 873 TRPENQRIIGCRWIFKYKLGILGVEEPRFKARLVAKGYAQKEGIDYHEIFAPVV 926
Score = 31.6 bits (70), Expect(2) = 1e-12
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +3
Query: 15 NRSLWLYAMEEEISSLHKNKT*ILVQKPQNK 107
N W AM+EEI S KN T +V +P+N+
Sbjct: 848 NFDKWKLAMDEEIDSQEKNNTWTIVTRPENQ 878
>gb|AFB73912.1| polyprotein [Citrus sinensis]
Length = 1309
Score = 60.8 bits (146), Expect(2) = 1e-12
Identities = 29/49 (59%), Positives = 39/49 (79%)
Frame = +2
Query: 104 QKLINCKWIFKIKEPESANEPPRFKARLVVKGFSQVEGIDFNEIFSPVV 250
+K I KW++KIK + ++ R++ARLVVKG++Q EGIDFNEIFSPVV
Sbjct: 833 RKAIGNKWVYKIKR-DGNDQVERYRARLVVKGYAQKEGIDFNEIFSPVV 880
Score = 37.4 bits (85), Expect(2) = 1e-12
Identities = 18/35 (51%), Positives = 24/35 (68%)
Frame = +3
Query: 3 LKSPNRSLWLYAMEEEISSLHKNKT*ILVQKPQNK 107
L S + +LW+ AM+EEI +LHKNKT LV P +
Sbjct: 799 LNSLDVALWMTAMQEEIEALHKNKTWELVPLPHGR 833
>gb|ACL97387.1| Gag-Pol polyprotein [Lotus japonicus]
Length = 1305
Score = 62.0 bits (149), Expect(2) = 2e-12
Identities = 30/49 (61%), Positives = 39/49 (79%)
Frame = +2
Query: 104 QKLINCKWIFKIKEPESANEPPRFKARLVVKGFSQVEGIDFNEIFSPVV 250
+K I KW+FKIK + ++ R++ARLVVKG++Q EGIDFNEIFSPVV
Sbjct: 829 RKAIGNKWVFKIKR-DGNDQVERYRARLVVKGYAQKEGIDFNEIFSPVV 876
Score = 35.8 bits (81), Expect(2) = 2e-12
Identities = 15/29 (51%), Positives = 22/29 (75%)
Frame = +3
Query: 21 SLWLYAMEEEISSLHKNKT*ILVQKPQNK 107
SLW+ AM+EEI +LH+N T LV+ P+ +
Sbjct: 801 SLWMAAMQEEIEALHRNNTWELVELPKGR 829
>gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1278
Score = 77.4 bits (189), Expect = 2e-12
Identities = 39/83 (46%), Positives = 53/83 (63%), Gaps = 9/83 (10%)
Frame = +2
Query: 29 VVCYGRGNILSSQKQNLDSCSKTS---------KQKLINCKWIFKIKEPESANEPPRFKA 181
VV R +S+ ++ + S K ++K + CKWIFK KE S +EPPRFKA
Sbjct: 813 VVSGDREKWISAMQEEMQSLEKNGTWELVHLPKQKKPVRCKWIFKRKEGLSPSEPPRFKA 872
Query: 182 RLVVKGFSQVEGIDFNEIFSPVV 250
RLV KGFSQ+ G+D+N++FSPVV
Sbjct: 873 RLVAKGFSQIVGVDYNDVFSPVV 895
>emb|CAN74382.1| hypothetical protein VITISV_007945 [Vitis vinifera]
Length = 444
Score = 66.6 bits (161), Expect(2) = 2e-12
Identities = 30/48 (62%), Positives = 36/48 (75%)
Frame = +2
Query: 107 KLINCKWIFKIKEPESANEPPRFKARLVVKGFSQVEGIDFNEIFSPVV 250
K++ CKW+FK K EP RFKARLV KG++Q EG+DFNEIFSP V
Sbjct: 233 KVVGCKWVFKKKLGIPGVEPERFKARLVAKGYTQREGVDFNEIFSPAV 280
Score = 30.8 bits (68), Expect(2) = 2e-12
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +3
Query: 27 WLYAMEEEISSLHKNKT*ILVQKPQ 101
W+ AM+EE SL +N T +LV KP+
Sbjct: 206 WMNAMQEEFESLFQNGTRLLVDKPK 230
>gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]
Length = 1297
Score = 64.7 bits (156), Expect(2) = 3e-12
Identities = 28/53 (52%), Positives = 40/53 (75%)
Frame = +2
Query: 92 KTSKQKLINCKWIFKIKEPESANEPPRFKARLVVKGFSQVEGIDFNEIFSPVV 250
K ++KL+ CKW+F+ KE ++ +KARLV KG+SQ EG+D++EIFSPVV
Sbjct: 819 KPKERKLVGCKWVFRKKEGIHEDDAITYKARLVAKGYSQKEGVDYDEIFSPVV 871
Score = 32.3 bits (72), Expect(2) = 3e-12
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +3
Query: 3 LKSPNRSLWLYAMEEEISSLHKNKT*ILVQKPQNK 107
++S + W+ AM EE+ SLHKN LV KP+ +
Sbjct: 789 IESVESAGWIGAMTEEMESLHKNSVWELVPKPKER 823
>ref|XP_003216126.1| PREDICTED: copia protein-like [Anolis carolinensis]
Length = 1366
Score = 57.8 bits (138), Expect(2) = 3e-12
Identities = 26/49 (53%), Positives = 37/49 (75%)
Frame = +2
Query: 104 QKLINCKWIFKIKEPESANEPPRFKARLVVKGFSQVEGIDFNEIFSPVV 250
+ ++ CKWIFK+K E+ E R+KARLV KG+SQ G D++E+F+PVV
Sbjct: 892 RNVVGCKWIFKLKRDENG-EIQRYKARLVAKGYSQQYGEDYDEVFAPVV 939
Score = 38.9 bits (89), Expect(2) = 3e-12
Identities = 20/38 (52%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Frame = +3
Query: 3 LKSPN--RSLWLYAMEEEISSLHKNKT*ILVQKPQNKN 110
LK P + WL A +EI SLHKNKT LV P+N+N
Sbjct: 856 LKFPEDEKEKWLTAASDEIESLHKNKTWTLVPPPENRN 893