BLASTX nr result
ID: Catharanthus22_contig00017489
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus22_contig00017489
(1892 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAN73532.1| hypothetical protein VITISV_012827 [Vitis vinifera] 298 e-102
emb|CAN71427.1| hypothetical protein VITISV_027864 [Vitis vinifera] 277 3e-93
emb|CAN63563.1| hypothetical protein VITISV_003097 [Vitis vinifera] 341 6e-91
emb|CAN75363.1| hypothetical protein VITISV_026292 [Vitis vinifera] 224 7e-75
emb|CAN61340.1| hypothetical protein VITISV_007301 [Vitis vinifera] 134 1e-51
gb|AGW47867.1| polyprotein [Phaseolus vulgaris] 165 1e-47
emb|CAB71063.1| copia-type polyprotein [Arabidopsis thaliana] 170 4e-47
gb|AAG50698.1|AC079604_5 copia-type polyprotein, putative [Arabi... 172 4e-47
gb|AAD50001.1|AC007259_14 Hypothetical protein [Arabidopsis thal... 170 1e-46
emb|CAB75469.1| copia-type reverse transcriptase-like protein [A... 170 2e-46
gb|AFB73911.1| polyprotein [Citrus sinensis] 157 4e-46
gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula] 171 7e-46
gb|AAG60117.1|AC073555_1 copia-type polyprotein, putative [Arabi... 166 4e-45
dbj|BAB01972.1| copia-like retrotransposable element [Arabidopsi... 171 5e-45
gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula] 167 6e-45
gb|AFB73912.1| polyprotein [Citrus sinensis] 156 3e-44
gb|ABR16307.1| unknown [Picea sitchensis] 180 2e-42
dbj|BAD34493.1| Gag-Pol [Ipomoea batatas] 166 4e-42
emb|CCI55340.1| PH01B019A14.9 [Phyllostachys edulis] 151 3e-40
gb|AAT07563.1| putative polyprotein [Oryza sativa Japonica Group... 160 4e-40
>emb|CAN73532.1| hypothetical protein VITISV_012827 [Vitis vinifera]
Length = 1194
Score = 298 bits (764), Expect(2) = e-102
Identities = 162/341 (47%), Positives = 207/341 (60%), Gaps = 7/341 (2%)
Frame = -2
Query: 1003 EYKGSRMVVTVHNTR-------DTVIVPRRNPHKVELQNVMHVEAIKKNLLPVSLLTAT* 845
EYKG MVVT +N++ +TV+ + N + V LQNV HV +KKNLL V+ LT++
Sbjct: 343 EYKGRHMVVTXNNSKJPIAHIGNTVVSSQYNTNDVSLQNVYHVPGMKKNLLSVAQLTSSG 402
Query: 844 NYVVFCPHDVKVYRDVKITGTPILEEEKQESVYVMLAEAAYVEKSRKNETTYLWHARLGH 665
++V+F P DVKVYRD++I P++ + ESVYVM AE A V+K+RKNETT L H RL H
Sbjct: 403 HFVLFGPQDVKVYRDLEIMEEPVIXRWRLESVYVMSAETAXVDKTRKNETTDLXHMRLSH 462
Query: 664 VTYKRLKVTMIKSVLKGLPNLEVRDESICADCQDKKTHQLSYYESKYGARQPLELIHSVV 485
V+Y +L V M KS+LKGLP LEVR ++ICA C K HQL Y ESK+ + PLELIHS V
Sbjct: 463 VSYSKLTVMMKKSMLKGLPQLEVRKDTICAGCXYGKAHQLPYEESKWKTKGPLELIHSDV 522
Query: 484 LGPVKQPSFGGFRYMMTFINHYSKYAWVYFMKEKLETCDILKSFKREVEQDIGRKICCLR 305
GPVK S G +YM TFI+ +S+Y WV+FMKEK ET K FK E ++ ++I CLR
Sbjct: 523 FGPVKXASLSGMKYMXTFIDDFSRYVWVHFMKEKSETFSKFKEFKEMTEAEVDKRIRCLR 582
Query: 304 TDNGGEYISQEFSKFLRENKI*RQLSCPRTLHQMEVAKKTNPHLAETCRSLLHDKNVRPE 125
DNGGE S+LH KNV
Sbjct: 583 XDNGGE-------------------------------------------SMLHXKNVPGR 599
Query: 124 YWADCTRTVAHVINRLP*AKLGFKSTFEKLWNVRPIVSHFR 2
+W + +T A VINRLP +L F S FEKLWN++PIVS+FR
Sbjct: 600 FWVEAMKTAAFVINRLPQQRLNFSSPFEKLWNIKPIVSYFR 640
Score = 101 bits (252), Expect(2) = e-102
Identities = 93/309 (30%), Positives = 142/309 (45%), Gaps = 17/309 (5%)
Frame = -3
Query: 1890 VRAAKAMYTIKTSVEEEVLQHIGDATTAKEAW-TF*QVF*EN*LT--PPIFRK*ISL*IK 1720
++ KAM+ +KT++EE+VL+HI DA T EAW TF ++F + T + + +S+ +
Sbjct: 60 IKXGKAMFALKTTIEEDVLEHIRDAKTPYEAWNTFTKLFSKKNDTRLQLLESELLSIAQR 119
Query: 1719 EV*QCEIIYESKISCS*NFLVRSEE*SWGGPNKKKNNTQVTAGI*KLHDSSTGLANTTNS 1540
++ ++ K C E P + ++ I L G
Sbjct: 120 DLTITHYFHKVKTLCR-----EISELDLEAPIGETRMKRII--IHGLRPKFRGFVAAIQG 172
Query: 1539 ERIRKYVAEQESL-------AKQAASMTIKDEEQALYNGQGRGGSKRNPELGKSKGYRRF 1381
+ + + E E+L AKQ +++K EE+ALY +GR SK++ + G +
Sbjct: 173 WQNQPSLVEFENLLAGQEALAKQMGGVSLKGEEEALYAHKGRWNSKQH-----TVGRTKK 227
Query: 1380 NRQPEKSQQEGGAEDSEGEYKN-----SNNGRCYNRGKKGHNARDC*SKKKKLVEGNVAI 1216
N K Q + EG+ KN G+CYN GKKGH A+DC S KK LVE N A
Sbjct: 228 NEDKAKXSQGERSARVEGDSKNPXTRKKXEGKCYNCGKKGHMAKDCWS-KKGLVESNAAT 286
Query: 1215 SEAHENHRMTTGI*SNPCVGRASSEVHANYAVAEDSTTILVKTIPISYK--WIVDSGAAN 1042
SE+ + + A + +S I + I Y+ WI+DSG +N
Sbjct: 287 SESEBEW-----------------DAQAFFVAXGESXFIATTSEQIDYEKDWIIDSGCSN 329
Query: 1041 QMTGDLEKL 1015
MTGD EKL
Sbjct: 330 HMTGDKEKL 338
>emb|CAN71427.1| hypothetical protein VITISV_027864 [Vitis vinifera]
Length = 1300
Score = 277 bits (709), Expect(2) = 3e-93
Identities = 152/341 (44%), Positives = 200/341 (58%), Gaps = 7/341 (2%)
Frame = -2
Query: 1003 EYKGSRMVVTVHNTR-------DTVIVPRRNPHKVELQNVMHVEAIKKNLLPVSLLTAT* 845
EYKG MVVT +N++ +TV+ + N + V LQNV HV +KKNLL V+ LT++
Sbjct: 343 EYKGRHMVVTANNSKLPIAHIGNTVVSSQYNTNDVSLQNVYHVPGMKKNLLSVAQLTSSG 402
Query: 844 NYVVFCPHDVKVYRDVKITGTPILEEEKQESVYVMLAEAAYVEKSRKNETTYLWHARLGH 665
+ V+F P DVKVY D+++ P+++ + ESVYVM AE AYV+K+RKNET LWH RL H
Sbjct: 403 HSVLFGPQDVKVYHDLEVMEEPVIKGRRLESVYVMSAETAYVDKTRKNETADLWHMRLSH 462
Query: 664 VTYKRLKVTMIKSVLKGLPNLEVRDESICADCQDKKTHQLSYYESKYGARQPLELIHSVV 485
++Y +L + M KS+LKGLP LEVR +ICA CQ K HQL Y ESK+ A+ PLELIHS V
Sbjct: 463 ISYSKLTMMMKKSMLKGLPQLEVRKXTICAXCQYGKAHQLPYEESKWKAKGPLELIHSDV 522
Query: 484 LGPVKQPSFGGFRYMMTFINHYSKYAWVYFMKEKLETCDILKSFKREVEQDIGRKICCLR 305
GPVKQ S G +YM+TFI+ +S+
Sbjct: 523 FGPVKQASLSGMKYMVTFIDDFSRRV---------------------------------- 548
Query: 304 TDNGGEYISQEFSKFLRENKI*RQLSCPRTLHQMEVAKKTNPHLAETCRSLLHDKNVRPE 125
Y+ F + +C T Q V ++ N HLAE CRS+LH KNV
Sbjct: 549 ------YLQMSFFTSSENXEYAISFTCANTPQQNGVXERKNRHLAEICRSMLHAKNVPGX 602
Query: 124 YWADCTRTVAHVINRLP*AKLGFKSTFEKLWNVRPIVSHFR 2
+WA+ +T A VINRLP +L F S FEKLWN++P VS+FR
Sbjct: 603 FWAEXMKTAAFVINRLPQQRLNFSSPFEKLWNIKPTVSYFR 643
Score = 94.0 bits (232), Expect(2) = 3e-93
Identities = 90/311 (28%), Positives = 142/311 (45%), Gaps = 19/311 (6%)
Frame = -3
Query: 1890 VRAAKAMYTIKTSVEEEVLQHIGDATTAKEAW-TF*QVF*EN*LT--PPIFRK*ISL*IK 1720
++A KAM+ +KT++EE+VL+HI DA T EAW TF ++F + T + + S+ +
Sbjct: 60 IKAGKAMFALKTTIEEDVLEHIRDAKTPYEAWNTFTKLFSKKNDTRLQLLESELFSVAQR 119
Query: 1719 EV*QCEIIYESKISCS*NFLVRSEE*SWGGPNKKKNNTQVTAGI*KLHDSSTGLANTTNS 1540
++ + ++ K C E P + ++ I L G
Sbjct: 120 DLTIAQYFHKVKTLCR-----EISELDLEAPIGETXMKRII--IHGLRPEFRGFVAAIQG 172
Query: 1539 ERIRKYVAEQESL-------AKQAASMTIKDEEQALYNGQGRGGSKRNPELGKSKGYRRF 1381
+ + + E E+L AKQ +++K EE+ALY +G S ++ RR
Sbjct: 173 WQNQPSLVEFENLLAGQEALAKQMGGVSLKGEEEALYAHKGGWNSXQHT-------VRRT 225
Query: 1380 NRQPEKSQQEGGAEDS--EGEYKNSN-----NGRCYNRGKKGHNARDC*SKKKKLVEGNV 1222
+ +K++ G + EG+ KN G+CYN KKGH A+DC S KK LVE N
Sbjct: 226 KKNEDKAKCSQGERSARVEGDSKNPGTXKKFEGKCYNCXKKGHMAKDCWS-KKGLVESNA 284
Query: 1221 AISEAHENHRMTTGI*SNPCVGRASSEVHANYAVAEDSTTILVKTIPISYK--WIVDSGA 1048
S++ + + A +A +S I + I Y+ WI+DSG
Sbjct: 285 TTSKSEDEW-----------------DAQAFFAAIGESAFIATTSEQIDYEKDWIIDSGC 327
Query: 1047 ANQMTGDLEKL 1015
+N MTGD EKL
Sbjct: 328 SNHMTGDKEKL 338
>emb|CAN63563.1| hypothetical protein VITISV_003097 [Vitis vinifera]
Length = 1052
Score = 341 bits (875), Expect = 6e-91
Identities = 176/341 (51%), Positives = 227/341 (66%), Gaps = 7/341 (2%)
Frame = -2
Query: 1003 EYKGSRMVVTVHNTR-------DTVIVPRRNPHKVELQNVMHVEAIKKNLLPVSLLTAT* 845
EYKG MV+T +N++ +TV+ + N + V LQNV HV +KKNLL V+ LT++
Sbjct: 247 EYKGRHMVITTNNSKLPIAHIGNTVVSSQYNTNDVSLQNVYHVPGMKKNLLSVAQLTSSG 306
Query: 844 NYVVFCPHDVKVYRDVKITGTPILEEEKQESVYVMLAEAAYVEKSRKNETTYLWHARLGH 665
++V+F P DVKV RD++I P+++ + ES+YVM E AYV+K+RKNE LWH RL H
Sbjct: 307 HFVLFSPQDVKVXRDLEIMEEPVIKGWRLESIYVMFVETAYVDKTRKNEIADLWHMRLSH 366
Query: 664 VTYKRLKVTMIKSVLKGLPNLEVRDESICADCQDKKTHQLSYYESKYGARQPLELIHSVV 485
V+Y +L V M KS+LKGLP LE K HQLSY ESK+ A+ PLELIHS V
Sbjct: 367 VSYSKLTVMMKKSMLKGLPQLE------------GKAHQLSYEESKWKAKGPLELIHSDV 414
Query: 484 LGPVKQPSFGGFRYMMTFINHYSKYAWVYFMKEKLETCDILKSFKREVEQDIGRKICCLR 305
GPVKQ G +YM+TFI+ +S+Y WVYFMKEK ET K FK E ++ ++I CLR
Sbjct: 415 FGPVKQAXLSGMKYMVTFIDDFSRYVWVYFMKEKSETFSKFKEFKEMTEIEVDKRIHCLR 474
Query: 304 TDNGGEYISQEFSKFLRENKI*RQLSCPRTLHQMEVAKKTNPHLAETCRSLLHDKNVRPE 125
TDNG Y S EF FLRE ++ Q +C TL Q VA++ N HLAE CRS+LH KNV
Sbjct: 475 TDNGXXYTSNEFFYFLRECRVRHQFTCANTLQQNGVAERKNRHLAEICRSMLHAKNVPGR 534
Query: 124 YWADCTRTVAHVINRLP*AKLGFKSTFEKLWNVRPIVSHFR 2
+WA+ +T A VINRLP +L F S FEKLWN++P VS+FR
Sbjct: 535 FWAEAMKTXAFVINRLPQQRLNFSSPFEKLWNIKPTVSYFR 575
Score = 86.3 bits (212), Expect = 4e-14
Identities = 47/88 (53%), Positives = 60/88 (68%), Gaps = 1/88 (1%)
Frame = -1
Query: 1781 YSKKIDSRLQFLESEFLSES-RKFSNARLFTKVKSLALEISS*DPKNKVGEDRIRRKIIH 1605
+SKK D+RLQ LES+ LS + R + A+ F KVK L EIS D + +GE R++R IIH
Sbjct: 98 FSKKNDTRLQLLESKLLSVTQRDLTIAQYFHKVKMLCREISELDLEAPIGETRMKRIIIH 157
Query: 1604 RLRPEYRSFTIAVQGWPTQPTLKELENM 1521
LRPE+R F AVQGW QP+L E EN+
Sbjct: 158 GLRPEFRGFVAAVQGWQNQPSLVEFENL 185
>emb|CAN75363.1| hypothetical protein VITISV_026292 [Vitis vinifera]
Length = 1161
Score = 224 bits (571), Expect(2) = 7e-75
Identities = 139/343 (40%), Positives = 181/343 (52%), Gaps = 9/343 (2%)
Frame = -2
Query: 1003 EYKGSRMVVTVHNTR-------DTVIVPRRNPHKVELQNVMHVEAIKKNLLPVSLLTAT* 845
EYKG MVVT +N++ +TV+ + N + V LQNV HV +KKNLL ++ LT++
Sbjct: 343 EYKGRHMVVTXNNSKLPIAHIGNTVVSSQYNTNDVSLQNVYHVXGMKKNLLSIAQLTSSG 402
Query: 844 NYVVFCPHDVKVYRDVKITGTPILEEEKQESVYVMLAEAAYVEKSRKNETTYLWHARLGH 665
V+F P DVKVYRD++I +EE V K R+ E+ Y+ A +
Sbjct: 403 XSVLFGPQDVKVYRDLEI-----MEE--------------LVIKGRRLESVYVMSAETAY 443
Query: 664 --VTYKRLKVTMIKSVLKGLPNLEVRDESICADCQDKKTHQLSYYESKYGARQPLELIHS 491
T KR+ M +S+ G
Sbjct: 444 DVSTAKRISCRM---------------------------------KSQNG---------- 460
Query: 490 VVLGPVKQPSFGGFRYMMTFINHYSKYAWVYFMKEKLETCDILKSFKREVEQDIGRKICC 311
KQ S G +YM+TFIN +S Y WVYFMKEK ET K FK E + ++I C
Sbjct: 461 ------KQASLSGMKYMVTFINDFSNYVWVYFMKEKSETFSKYKEFKEMTEVKVDKRIRC 514
Query: 310 LRTDNGGEYISQEFSKFLRENKI*RQLSCPRTLHQMEVAKKTNPHLAETCRSLLHDKNVR 131
LRTDNGGEY S EF FLRE ++ Q +C T Q VA++ N HLAE CRS+LH KNV
Sbjct: 515 LRTDNGGEYTSDEFFYFLRECRVRHQFTCANTPQQNSVAERKNRHLAEICRSMLHAKNVP 574
Query: 130 PEYWADCTRTVAHVINRLP*AKLGFKSTFEKLWNVRPIVSHFR 2
+WA+ +TVA VINRLP KL F S FEKLWN++P +S+FR
Sbjct: 575 RRFWAEAMKTVAFVINRLPQQKLNFSSPFEKLWNIKPTISYFR 617
Score = 85.9 bits (211), Expect(2) = 7e-75
Identities = 65/190 (34%), Positives = 88/190 (46%), Gaps = 7/190 (3%)
Frame = -3
Query: 1563 GLANTTNSERIRKYVAEQESLAKQAASMTIKDEEQALYNGQGRGGSKRNPELGKSKGYRR 1384
G N + +A QE+LAKQ +++K EE+ALY + R SK++ K
Sbjct: 172 GWQNQPSLVEFENLLAGQEALAKQMGGVSLKGEEEALYAHKXRWNSKQHTVRRTKK---- 227
Query: 1383 FNRQPEKSQQEGGAEDSEGEYKNSN-----NGRCYNRGKKGHNARDC*SKKKKLVEGNVA 1219
N KS Q + EG+ KN G CYN KKGH A+DC S KK LVE N A
Sbjct: 228 -NEDKAKSSQGERSARVEGDSKNPXTRKKFEGTCYNCRKKGHMAKDCWS-KKGLVESNAA 285
Query: 1218 ISEAHENHRMTTGI*SNPCVGRASSEVHANYAVAEDSTTILVKTIPISYK--WIVDSGAA 1045
S++ + + A + +S I + I Y+ WI+DSG +
Sbjct: 286 TSKSXDEW-----------------DAQALFXAIGESAFIATTSEQIDYEKDWIIDSGCS 328
Query: 1044 NQMTGDLEKL 1015
N MTGD EKL
Sbjct: 329 NHMTGDKEKL 338
Score = 87.0 bits (214), Expect(2) = 2e-21
Identities = 47/88 (53%), Positives = 59/88 (67%), Gaps = 1/88 (1%)
Frame = -1
Query: 1781 YSKKIDSRLQFLESEFLS-ESRKFSNARLFTKVKSLALEISS*DPKNKVGEDRIRRKIIH 1605
+SKK D+RLQ LESE LS R + A F KVK+L EIS D + +GE R++R IIH
Sbjct: 98 FSKKNDTRLQLLESELLSIXQRDXTIAXYFHKVKTLCREISELDLEAPIGETRMKRIIIH 157
Query: 1604 RLRPEYRSFTIAVQGWPTQPTLKELENM 1521
LRPE+R F A+QGW QP+L E EN+
Sbjct: 158 GLRPEFRGFVAAIQGWQNQPSLVEFENL 185
Score = 44.3 bits (103), Expect(2) = 2e-21
Identities = 20/39 (51%), Positives = 30/39 (76%), Gaps = 1/39 (2%)
Frame = -3
Query: 1890 VRAAKAMYTIKTSVEEEVLQHIGDATTAKEAW-TF*QVF 1777
++A K M+ +KT++EE+VL+HI DA T EAW TF ++F
Sbjct: 60 IKAGKXMFALKTTIEEDVLEHIRDAKTPYEAWNTFTKLF 98
>emb|CAN61340.1| hypothetical protein VITISV_007301 [Vitis vinifera]
Length = 973
Score = 134 bits (336), Expect(2) = 1e-51
Identities = 71/146 (48%), Positives = 99/146 (67%)
Frame = -2
Query: 1003 EYKGSRMVVTVHNTRDTVIVPRRNPHKVELQNVMHVEAIKKNLLPVSLLTAT*NYVVFCP 824
EYKG MVVT +N++ +P + H+ +KKNLL V+ LT++ ++V+F P
Sbjct: 278 EYKGRHMVVTXNNSK----LP-----------IAHI-GMKKNLLSVAQLTSSGHFVLFGP 321
Query: 823 HDVKVYRDVKITGTPILEEEKQESVYVMLAEAAYVEKSRKNETTYLWHARLGHVTYKRLK 644
DVKVYRD++I +++ + ESVYVM AE AYV K+RKNET LWH RL H++Y +L
Sbjct: 322 QDVKVYRDLEIMEESVIKGRRLESVYVMSAETAYVNKTRKNETINLWHMRLSHISYSKLT 381
Query: 643 VTMIKSVLKGLPNLEVRDESICADCQ 566
V M KS+LKGLP LE+R ++ICA C+
Sbjct: 382 VMMKKSMLKGLPELEMRKDTICAGCE 407
Score = 99.0 bits (245), Expect(2) = 1e-51
Identities = 93/300 (31%), Positives = 138/300 (46%), Gaps = 14/300 (4%)
Frame = -3
Query: 1872 MYTIKTSVEEEVLQHIGDATTAKEAW-TF*QVF*E-N*LTPPIFRK*ISL*IKEV*QCEI 1699
M+ +KT++EE+VL+HI DA T EAW TF ++F + N + + L V QC +
Sbjct: 1 MFALKTTIEEDVLEHIRDAKTPYEAWNTFTKLFSKKNDTRLQLLESELLL----VAQCNL 56
Query: 1698 -----IYESKISCS*NFLVRSEE*SWGGPNKKKNNTQVTAGI*KLHDSSTGLANTTNSER 1534
++ K C F + E K+ + + + G N +
Sbjct: 57 TIAQYFHKVKTLCREIFELDLEAPIGETRMKRIIIHGLRPELRGFVAAVQGWKNQPSLVE 116
Query: 1533 IRKYVAEQESLAKQAASMTIKDEEQALYNGQGRGGSKRNPELGKSKGYRRFNRQPEKSQQ 1354
+A QE+LAKQ +++K EE+ALY +GR SK++ + G + N KS Q
Sbjct: 117 FENLLAGQEALAKQMGGVSLKGEEKALYAHKGRWNSKQH-----TVGRTKKNEDKAKSSQ 171
Query: 1353 EGGAEDSEGEYKNSN-----NGRCYNRGKKGHNARDC*SKKKKLVEGNVAISEAHENHRM 1189
+ +G+ KN GRCYN KKG A+DC S KK LVE N S++ +
Sbjct: 172 GERSARVKGDSKNLGTRKKFQGRCYNCRKKGXMAKDCWS-KKGLVENNATTSKSKDEW-- 228
Query: 1188 TTGI*SNPCVGRASSEVHANYAVAEDSTTILVKTIPISYK--WIVDSGAANQMTGDLEKL 1015
+ A +A +S I + I Y+ WI+DSG +N MTGD EKL
Sbjct: 229 ---------------DTQAFFAAXGESAFIATTSEQIDYEKDWIIDSGCSNHMTGDKEKL 273
>gb|AGW47867.1| polyprotein [Phaseolus vulgaris]
Length = 1471
Score = 165 bits (418), Expect(2) = 1e-47
Identities = 106/324 (32%), Positives = 170/324 (52%), Gaps = 4/324 (1%)
Frame = -2
Query: 961 RDTVIVPRRNPHKVELQNVMHVEAIKKNLLPVSLLTAT*NYVVFCPHDVKVYRDVKITGT 782
R TV +++ LQ+V +V +K N+L + LT Y +F ++ + G
Sbjct: 397 RGTVCYLQKDGLIGSLQDVYYVPDLKTNILSMGQLTEK-GYSIFLKDRFLHLKNKQ--GC 453
Query: 781 PILEEEKQESVYVMLAEAAYVEKSRK---NETTYLWHARLGHVTYKRLKVTMIKSVLKGL 611
+ E + L + EK + + LWH R GH+ + LK K+++ GL
Sbjct: 454 LVARIEMARNRMYKLNLRSIREKCLQVNIEDKASLWHLRFGHLHHGGLKELAKKNMVHGL 513
Query: 610 PNLEVRDESICADCQDKKTHQLSY-YESKYGARQPLELIHSVVLGPVKQPSFGGFRYMMT 434
PN++ + C +C K + S+ +++Y A+QPLELIH+ + GP+ SF G RY +T
Sbjct: 514 PNMDYEGK-FCEECVLSKHVRTSFPKKAQYWAKQPLELIHTDICGPITPESFSGKRYFIT 572
Query: 433 FINHYSKYAWVYFMKEKLETCDILKSFKREVEQDIGRKICCLRTDNGGEYISQEFSKFLR 254
FI+ +S+ WVYF+KEK E ++ K FK VE+ ++I +R+D GGEY S F ++
Sbjct: 573 FIDDFSRKTWVYFLKEKSEAFEVFKKFKVMVERTTDKQIKAVRSDRGGEYTSTTFMEYCE 632
Query: 253 ENKI*RQLSCPRTLHQMEVAKKTNPHLAETCRSLLHDKNVRPEYWADCTRTVAHVINRLP 74
E I R L+ P T Q VA++ N + + RS+L K + E+WA+ + +V NR P
Sbjct: 633 EQGIRRFLTAPYTPQQNGVAERKNRTILDMVRSMLKSKKMPKEFWAEAVQCAIYVQNRCP 692
Query: 73 *AKLGFKSTFEKLWNVRPIVSHFR 2
KL ++ E +P VSH +
Sbjct: 693 HVKLDDQTPQEAWSGQKPTVSHLK 716
Score = 53.5 bits (127), Expect(2) = 1e-47
Identities = 82/329 (24%), Positives = 135/329 (41%), Gaps = 47/329 (14%)
Frame = -3
Query: 1875 AMYTIKTSVEEEVLQHIGDATTAKEAWTF*Q-VF*EN*LTPPIFRK*ISL*IKEV*QCEI 1699
A+Y + +V+E + + I A+T+KEAW + VF + + + ++ + E
Sbjct: 70 ALYMLYRAVDEAIFEKIAGASTSKEAWDILEKVFKGADRVKQVRLQTLRGELENMKMMES 129
Query: 1698 I----YESKISCS*NFLVRSEE*SWGGPNKKK-------NNTQVTAGI*KLHDSST---- 1564
Y +++ N L R+ E +K N + I + D +T
Sbjct: 130 ESVSDYITRVQAVVNQLNRNGETLTDARVVEKILRTLTDNFESIVCAIEESKDLATLTVD 189
Query: 1563 GLANTTNSERIRKYVAEQESLAKQAASM-TIKDE-----EQALYNGQGRGGSKRNPELGK 1402
LA + + RK ++E+L + + +IKDE + + Y G+GRG S+ N GK
Sbjct: 190 ELAGSLEAHEQRKKKKKEETLEQALQTKASIKDEKVLYHQNSQYRGRGRG-SRGNGRGGK 248
Query: 1401 SKGYRRFNRQPEKSQQ-----------EGGAEDSE----------GEY-KNSNNGRCYNR 1288
+ + ++ E+S Q GG + G Y K+ N+ +CYN
Sbjct: 249 GSNHEGYYKEKEQSSQPNWRGRGRGRGRGGRSNYSNIECYKCHKYGHYAKDCNSDKCYNC 308
Query: 1287 GKKGHNARDC*SKKKKLVEGNVAISEAHENHRMTTGI*SNPCVGRASSEVHANYAV---A 1117
GK GH A+DC ++ I E TT + + EV N V A
Sbjct: 309 GKVGHFAKDC--------RADIKIEE-------TTNL---------ALEVETNEGVLLMA 344
Query: 1116 EDSTTILVKTIPISYKWIVDSGAANQMTG 1030
+D I T+ W +DSGA+N M G
Sbjct: 345 QDEVNINNDTL-----WYLDSGASNHMCG 368
>emb|CAB71063.1| copia-type polyprotein [Arabidopsis thaliana]
Length = 1352
Score = 170 bits (431), Expect(2) = 4e-47
Identities = 104/337 (30%), Positives = 172/337 (51%), Gaps = 1/337 (0%)
Frame = -2
Query: 1009 KMEYKGSRMVVTVHNTRDTVIVPRRNPHKVELQNVMHVEAIKKNLLPVSLLTAT*NYVVF 830
KME KG + +++ +N + NV ++ ++K N+L + L +
Sbjct: 370 KMEVKG----------KGNILIRLKNGDHQFISNVYYIPSMKTNILSLGQLLEKGYDIRL 419
Query: 829 CPHDVKVYRDVKITGTPILEEEKQESVYVMLAEAAYVEKSRKNETTYLWHARLGHVTYKR 650
+++ + T + + + V + + A K E ++LWH R GH+ +
Sbjct: 420 KDNNLSIRDQESNLITKVPMSKNRMFVLNIRNDIAQCLKMCYKEESWLWHLRFGHLNFGG 479
Query: 649 LKVTMIKSVLKGLPNLEVRDESICADCQDKKTHQLSY-YESKYGARQPLELIHSVVLGPV 473
L++ K +++GLP + +C C K ++S+ ES A++PLELIH+ V GP+
Sbjct: 480 LELLSRKEMVRGLPCIN-HPNQVCEGCLLGKQFKMSFPKESSSRAQKPLELIHTDVCGPI 538
Query: 472 KQPSFGGFRYMMTFINHYSKYAWVYFMKEKLETCDILKSFKREVEQDIGRKICCLRTDNG 293
K S G Y + FI+ +S+ WVYF+KEK E +I K FK VE++ G I +R+D G
Sbjct: 539 KPKSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFEIFKKFKAHVEKESGLVIKTMRSDRG 598
Query: 292 GEYISQEFSKFLRENKI*RQLSCPRTLHQMEVAKKTNPHLAETCRSLLHDKNVRPEYWAD 113
GE+ S+EF K+ +N I RQL+ PR+ Q V ++ N + E RS+L K + E WA+
Sbjct: 599 GEFTSKEFLKYCEDNGIRRQLTVPRSPQQNGVVERKNRTILEMARSMLKSKRLPKELWAE 658
Query: 112 CTRTVAHVINRLP*AKLGFKSTFEKLWNVRPIVSHFR 2
+++NR P + K+ E +P VSH R
Sbjct: 659 AVACAVYLLNRSPTKSVSGKTPQEAWSGRKPGVSHLR 695
Score = 47.0 bits (110), Expect(2) = 4e-47
Identities = 47/176 (26%), Positives = 71/176 (40%), Gaps = 14/176 (7%)
Frame = -3
Query: 1515 EQESLAKQAASMTIKDEEQAL---------YNGQGRGGSKRNPELGKSKGYR----RFNR 1375
++E +A+Q +M I EE G+GRGG G +G+R N+
Sbjct: 203 KKEDIAEQVLNMQITKEENGQSYQRRGGGQVRGRGRGG------YGNGRGWRPHEDNTNQ 256
Query: 1374 QPEKSQQEGGAEDSEGEYKNSNNGRCYNRGKKGHNARDC*S-KKKKLVEGNVAISEAHEN 1198
+ E S + G + Y S+ +CYN GK GH A +C + KK E + E +
Sbjct: 257 RGENSSRGRGKGHPKSRYDKSSV-KCYNCGKFGHYASECKAPSNKKFEEKAHYVEEKIQE 315
Query: 1197 HRMTTGI*SNPCVGRASSEVHANYAVAEDSTTILVKTIPISYKWIVDSGAANQMTG 1030
M + A+Y E ++KW +DSGA+N M G
Sbjct: 316 EDML---------------LMASYKKDEQKE---------NHKWYLDSGASNHMCG 347
>gb|AAG50698.1|AC079604_5 copia-type polyprotein, putative [Arabidopsis thaliana]
gi|12321387|gb|AAG50765.1|AC079131_10 copia-type
polyprotein, putative [Arabidopsis thaliana]
Length = 1320
Score = 172 bits (435), Expect(2) = 4e-47
Identities = 105/337 (31%), Positives = 173/337 (51%), Gaps = 1/337 (0%)
Frame = -2
Query: 1009 KMEYKGSRMVVTVHNTRDTVIVPRRNPHKVELQNVMHVEAIKKNLLPVSLLTAT*NYVVF 830
KME KG + +++ +N + NV ++ ++K N+L + L +
Sbjct: 370 KMEVKG----------KGNILIRLKNGDHQFISNVYYIPSMKTNILSLGQLLEKGYDIRL 419
Query: 829 CPHDVKVYRDVKITGTPILEEEKQESVYVMLAEAAYVEKSRKNETTYLWHARLGHVTYKR 650
+++ + T + + + V + + A K E ++LWH R GH+ +
Sbjct: 420 KDNNLSIRDQESNLITKVPMSKNRMFVLNIRNDIAQCLKMCYKEESWLWHLRFGHLNFGG 479
Query: 649 LKVTMIKSVLKGLPNLEVRDESICADCQDKKTHQLSY-YESKYGARQPLELIHSVVLGPV 473
L++ K +++GLP + +C C K ++S+ ES A++PLELIH+ V GP+
Sbjct: 480 LELLSRKEMVRGLPCIN-HPNQVCEGCLLGKQFKMSFPKESSSRAQKPLELIHTDVCGPI 538
Query: 472 KQPSFGGFRYMMTFINHYSKYAWVYFMKEKLETCDILKSFKREVEQDIGRKICCLRTDNG 293
K S G Y + FI+ +S+ WVYF+KEK E +I K FK VE++ G I +R+D G
Sbjct: 539 KPKSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFEIFKKFKAHVEKESGLVIKTMRSDRG 598
Query: 292 GEYISQEFSKFLRENKI*RQLSCPRTLHQMEVAKKTNPHLAETCRSLLHDKNVRPEYWAD 113
GE+ S+EF K+ +N I RQL+ PR+ Q VA++ N + E RS+L K + E WA+
Sbjct: 599 GEFTSKEFLKYCEDNGIRRQLTVPRSPQQNGVAERKNRTILEMARSMLKSKRLPKELWAE 658
Query: 112 CTRTVAHVINRLP*AKLGFKSTFEKLWNVRPIVSHFR 2
+++NR P + K+ E +P VSH R
Sbjct: 659 AVACAVYLLNRSPTKSVSGKTPQEAWSGRKPGVSHLR 695
Score = 45.4 bits (106), Expect(2) = 4e-47
Identities = 46/176 (26%), Positives = 70/176 (39%), Gaps = 14/176 (7%)
Frame = -3
Query: 1515 EQESLAKQAASMTIKDEEQAL---------YNGQGRGGSKRNPELGKSKGYR----RFNR 1375
++E + +Q +M I EE G+GRGG G +G+R N+
Sbjct: 203 KKEDIVEQVLNMQITKEENGQSYQRRGGGQVRGRGRGG------YGNGRGWRPHEDNTNQ 256
Query: 1374 QPEKSQQEGGAEDSEGEYKNSNNGRCYNRGKKGHNARDC*S-KKKKLVEGNVAISEAHEN 1198
+ E S + G + Y S+ +CYN GK GH A +C + KK E + E +
Sbjct: 257 RGENSSRGRGKGHPKSRYDKSSV-KCYNCGKFGHYASECKAPSNKKFEEKANYVEEKIQE 315
Query: 1197 HRMTTGI*SNPCVGRASSEVHANYAVAEDSTTILVKTIPISYKWIVDSGAANQMTG 1030
M + A+Y E ++KW +DSGA+N M G
Sbjct: 316 EDML---------------LMASYKKDEQEE---------NHKWYLDSGASNHMCG 347
>gb|AAD50001.1|AC007259_14 Hypothetical protein [Arabidopsis thaliana]
Length = 1352
Score = 170 bits (431), Expect(2) = 1e-46
Identities = 104/337 (30%), Positives = 172/337 (51%), Gaps = 1/337 (0%)
Frame = -2
Query: 1009 KMEYKGSRMVVTVHNTRDTVIVPRRNPHKVELQNVMHVEAIKKNLLPVSLLTAT*NYVVF 830
KME KG + +++ +N + NV ++ ++K N+L + L +
Sbjct: 370 KMEVKG----------KGNILIRLKNGDHQFISNVYYIPSMKTNILSLGQLLEKGYDIRL 419
Query: 829 CPHDVKVYRDVKITGTPILEEEKQESVYVMLAEAAYVEKSRKNETTYLWHARLGHVTYKR 650
+++ + T + + + V + + A K E ++LWH R GH+ +
Sbjct: 420 KDNNLSIRDQESNLITKVPMSKNRMFVLNIRNDIAQCLKMCYKEESWLWHLRFGHLNFGG 479
Query: 649 LKVTMIKSVLKGLPNLEVRDESICADCQDKKTHQLSY-YESKYGARQPLELIHSVVLGPV 473
L++ K +++GLP + +C C K ++S+ ES A++PLELIH+ V GP+
Sbjct: 480 LELLSRKEMVRGLPCIN-HPNQVCEGCLLGKQFKMSFPKESSSRAQKPLELIHTDVCGPI 538
Query: 472 KQPSFGGFRYMMTFINHYSKYAWVYFMKEKLETCDILKSFKREVEQDIGRKICCLRTDNG 293
K S G Y + FI+ +S+ WVYF+KEK E +I K FK VE++ G I +R+D G
Sbjct: 539 KPKSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFEIFKKFKAHVEKESGLVIKTMRSDRG 598
Query: 292 GEYISQEFSKFLRENKI*RQLSCPRTLHQMEVAKKTNPHLAETCRSLLHDKNVRPEYWAD 113
GE+ S+EF K+ +N I RQL+ PR+ Q V ++ N + E RS+L K + E WA+
Sbjct: 599 GEFTSKEFLKYCEDNGIRRQLTVPRSPQQNGVVERKNRTILEMARSMLKSKRLPKELWAE 658
Query: 112 CTRTVAHVINRLP*AKLGFKSTFEKLWNVRPIVSHFR 2
+++NR P + K+ E +P VSH R
Sbjct: 659 AVACAVYLLNRSPTKSVSGKTPQEAWSGRKPGVSHLR 695
Score = 45.4 bits (106), Expect(2) = 1e-46
Identities = 46/176 (26%), Positives = 70/176 (39%), Gaps = 14/176 (7%)
Frame = -3
Query: 1515 EQESLAKQAASMTIKDEEQAL---------YNGQGRGGSKRNPELGKSKGYR----RFNR 1375
++E + +Q +M I EE G+GRGG G +G+R N+
Sbjct: 203 KKEDIVEQVLNMQITKEENGQSYQRRGGGQVRGRGRGG------YGNGRGWRPHEDNTNQ 256
Query: 1374 QPEKSQQEGGAEDSEGEYKNSNNGRCYNRGKKGHNARDC*S-KKKKLVEGNVAISEAHEN 1198
+ E S + G + Y S+ +CYN GK GH A +C + KK E + E +
Sbjct: 257 RGENSSRGRGKGHPKSRYDKSSV-KCYNCGKFGHYASECKAPSNKKFEEKANYVEEKIQE 315
Query: 1197 HRMTTGI*SNPCVGRASSEVHANYAVAEDSTTILVKTIPISYKWIVDSGAANQMTG 1030
M + A+Y E ++KW +DSGA+N M G
Sbjct: 316 EDML---------------LMASYKKDEQKE---------NHKWYLDSGASNHMCG 347
>emb|CAB75469.1| copia-type reverse transcriptase-like protein [Arabidopsis thaliana]
Length = 1272
Score = 170 bits (430), Expect(2) = 2e-46
Identities = 104/337 (30%), Positives = 173/337 (51%), Gaps = 1/337 (0%)
Frame = -2
Query: 1009 KMEYKGSRMVVTVHNTRDTVIVPRRNPHKVELQNVMHVEAIKKNLLPVSLLTAT*NYVVF 830
KME KG + +++ +N + NV ++ ++K N+L + L +
Sbjct: 370 KMEVKG----------KGNILIRLKNGDHQFISNVYYIPSMKTNILSLGQLLEKGYDIRL 419
Query: 829 CPHDVKVYRDVKITGTPILEEEKQESVYVMLAEAAYVEKSRKNETTYLWHARLGHVTYKR 650
+++ + T + + + V + + A K E ++LWH R GH+ +
Sbjct: 420 KDNNLSIRDKESNLITKVPMSKNRMFVLNIRNDIAQCLKMCYKEESWLWHLRFGHLNFGG 479
Query: 649 LKVTMIKSVLKGLPNLEVRDESICADCQDKKTHQLSY-YESKYGARQPLELIHSVVLGPV 473
L++ K +++GLP + +C C ++S+ ES A++PLELIH+ V GP+
Sbjct: 480 LELLSRKEMVRGLPCIN-HPNQVCEGCLLGNQFKMSFPKESSSRAQKPLELIHTDVCGPI 538
Query: 472 KQPSFGGFRYMMTFINHYSKYAWVYFMKEKLETCDILKSFKREVEQDIGRKICCLRTDNG 293
K S G Y + FI+ +S+ WVYF+KEK E +I K FK VE++ G I +R+D+G
Sbjct: 539 KPKSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFEIFKKFKAHVEKESGLVIKTMRSDSG 598
Query: 292 GEYISQEFSKFLRENKI*RQLSCPRTLHQMEVAKKTNPHLAETCRSLLHDKNVRPEYWAD 113
GE+ S+EF K+ +N I RQL+ PR+ Q VA++ N + E RS+L K + E WA+
Sbjct: 599 GEFTSKEFLKYCEDNGIRRQLTVPRSPQQNGVAERKNRTILEMARSMLKSKRLPKELWAE 658
Query: 112 CTRTVAHVINRLP*AKLGFKSTFEKLWNVRPIVSHFR 2
+++NR P + K+ E +P VSH R
Sbjct: 659 AVACAVYLLNRSPTKSVSGKTPQEAWSGRKPGVSHLR 695
Score = 45.4 bits (106), Expect(2) = 2e-46
Identities = 46/177 (25%), Positives = 70/177 (39%), Gaps = 15/177 (8%)
Frame = -3
Query: 1515 EQESLAKQAASMTIKDEEQAL---------YNGQGRGGSKRNPELGKSKGYR----RFNR 1375
++E + +Q +M I EE G+GRGG G +G+R N+
Sbjct: 203 KKEDIVEQVLNMQITKEENGQSYQRRGGGQVRGRGRGG------YGNGRGWRPHEDNTNQ 256
Query: 1374 QPEKSQQEGGAEDSEGEYKNSNNGRCYNRGKKGHNARDC--*SKKKKLVEGNVAISEAHE 1201
+ E S + G + Y S+ +CYN GK GH A +C S KK + N + E
Sbjct: 257 RGENSSRGRGKGHPKSRYDKSSV-KCYNCGKFGHYASECKAPSNKKFKEKANYVEEKIQE 315
Query: 1200 NHRMTTGI*SNPCVGRASSEVHANYAVAEDSTTILVKTIPISYKWIVDSGAANQMTG 1030
+ + A+Y E ++KW +DSGA+N M G
Sbjct: 316 EDML----------------LMASYKKDEQEE---------NHKWYLDSGASNHMCG 347
>gb|AFB73911.1| polyprotein [Citrus sinensis]
Length = 1309
Score = 157 bits (397), Expect(2) = 4e-46
Identities = 99/302 (32%), Positives = 158/302 (52%), Gaps = 6/302 (1%)
Frame = -2
Query: 907 VMHVEAIKKNLLPVSLLTAT*NYVVFCPHDV-KVYRDVKITGTPILEEEKQESVYVMLA- 734
V HV +KKNLL + + + Y + + K+ + + +++ EK + ML
Sbjct: 351 VRHVNGLKKNLLSLGQMDSH-GYKTHVENGIMKIVKGALV----LMKVEKIGANLFMLKG 405
Query: 733 ----EAAYVEKSRKNETTYLWHARLGHVTYKRLKVTMIKSVLKGLPNLEVRDESICADCQ 566
EA S E+T +WH +LGH++ + LK+ + +L GL ++ + C C
Sbjct: 406 ETLQEADACVASNGEESTMMWHLKLGHMSEQGLKILSERKLLPGLKSVSL---PFCEHCV 462
Query: 565 DKKTHQLSYYESKYGARQPLELIHSVVLGPVKQPSFGGFRYMMTFINHYSKYAWVYFMKE 386
K H+L + S ++ L+LIHS V S GG +YM+TFI+ YS+ WVY +K+
Sbjct: 463 TSKQHRLKFSRSIARSKCILDLIHSDVWES-PDISMGGAKYMVTFIDDYSRRCWVYPIKK 521
Query: 385 KLETCDILKSFKREVEQDIGRKICCLRTDNGGEYISQEFSKFLRENKI*RQLSCPRTLHQ 206
K + + K +K VE + G+KI CLRTDNGGEY EF F ++ I RQ + T Q
Sbjct: 522 KSDVFPVFKEYKAWVELESGKKIKCLRTDNGGEYTDGEFLAFCKQEGIQRQFTVAYTPQQ 581
Query: 205 MEVAKKTNPHLAETCRSLLHDKNVRPEYWADCTRTVAHVINRLP*AKLGFKSTFEKLWNV 26
VA++ N L E R++L + +WA+ +T +++NR P +G K+ E +W
Sbjct: 582 NGVAERMNRTLTERIRAMLRTAGLPNSFWAEAAKTACYIVNRSPSTAIGLKTAME-MWTG 640
Query: 25 RP 20
+P
Sbjct: 641 KP 642
Score = 56.6 bits (135), Expect(2) = 4e-46
Identities = 48/184 (26%), Positives = 74/184 (40%)
Frame = -3
Query: 1560 LANTTNSERIRKYVAEQESLAKQAASMTIKDEEQALYNGQGRGGSKRNPELGKSKGYRRF 1381
+ N TN+ + ESL + ++ +EE N + R S + E R
Sbjct: 155 IINLTNNNPV-------ESLVFDDVAASVLNEESRRKNKENRQASSQQAEALSVTRGRST 207
Query: 1380 NRQPEKSQQEGGAEDSEGEYKNSNNGRCYNRGKKGHNARDC*SKKKKLVEGNVAISEAHE 1201
R P SQ +G +++ N +CYN GKKGH ++C S +K+ S A
Sbjct: 208 ERGPSGSQNQG-----RSKFRGKKNVKCYNCGKKGHVKKECWSNQKRREGKEPETSNA-- 260
Query: 1200 NHRMTTGI*SNPCVGRASSEVHANYAVAEDSTTILVKTIPISYKWIVDSGAANQMTGDLE 1021
CV S + Y+ ++TT+ +S W++DSGA MT E
Sbjct: 261 ----------QGCVASTSDDGEILYS---EATTVSEGRKRLSDVWLIDSGATWHMTSRRE 307
Query: 1020 KLFT 1009
T
Sbjct: 308 WFHT 311
>gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 171 bits (432), Expect(2) = 7e-46
Identities = 103/308 (33%), Positives = 167/308 (54%), Gaps = 7/308 (2%)
Frame = -2
Query: 919 ELQNVMHVEAIKKNLLPVSLLTAT*NYVVFCPHDVK--VYRDVKITGTPILEEEKQESVY 746
++Q V HV+ +KKNLL V L + C + + + VK + E+ ++Y
Sbjct: 346 KIQGVRHVKGLKKNLLSVGQLDD-----LGCKIHTESGILKVVKGNLVVMKAEKITSNLY 400
Query: 745 VMLAEA-----AYVEKSRKNETTYLWHARLGHVTYKRLKVTMIKSVLKGLPNLEVRDESI 581
++L + A V + + ETT +WH RLGH++ + LKV + +++L GL + +
Sbjct: 401 MLLGDTLQEADASVAAASQEETTMMWHQRLGHMSERGLKVLVERNLLHGLKTVNL---PF 457
Query: 580 CADCQDKKTHQLSYYESKYGARQPLELIHSVVLGPVKQPSFGGFRYMMTFINHYSKYAWV 401
C C K H+L + ++ L+LIHS V + S GG RY ++FI+ YS+ WV
Sbjct: 458 CEHCVISKQHRLKFARVTTRSKHILDLIHSDVWES-PELSLGGARYFVSFIDDYSRRLWV 516
Query: 400 YFMKEKLETCDILKSFKREVEQDIGRKICCLRTDNGGEYISQEFSKFLRENKI*RQLSCP 221
Y +K+K + + K+FK ++E + G+KI CLRTDNGGEY+ EF F ++ I RQ +
Sbjct: 517 YPIKKKSDVFPVFKAFKAQIELETGKKIKCLRTDNGGEYVDGEFLAFCKQEGIVRQFTVA 576
Query: 220 RTLHQMEVAKKTNPHLAETCRSLLHDKNVRPEYWADCTRTVAHVINRLP*AKLGFKSTFE 41
T Q VA++ N L E R++L + +WA+ +T +VINR P + K+ E
Sbjct: 577 HTPQQNGVAERMNRTLLERTRAMLKTAGMAKSFWAEAVKTACYVINRSPSTAIDLKTPME 636
Query: 40 KLWNVRPI 17
+W +P+
Sbjct: 637 -MWKGKPV 643
Score = 42.4 bits (98), Expect(2) = 7e-46
Identities = 41/156 (26%), Positives = 61/156 (39%)
Frame = -3
Query: 1476 IKDEEQALYNGQGRGGSKRNPELGKSKGYRRFNRQPEKSQQEGGAEDSEGEYKNSNNGRC 1297
I +EE N + R S + E R R P SQ G ++ + N +C
Sbjct: 176 ILEEESRRKNKEERSESSKQAEALTMTRGRSTERGPSGSQNHGRSKS-----RRKKNIKC 230
Query: 1296 YNRGKKGHNARDC*SKKKKLVEGNVAISEAHENHRMTTGI*SNPCVGRASSEVHANYAVA 1117
Y G KGH ++C + KK +N +T S CV S + Y+ A
Sbjct: 231 YGCGMKGHVKKECWNIKK----------NGEKNSEAST---SQGCVASTSDDGEILYSEA 277
Query: 1116 EDSTTILVKTIPISYKWIVDSGAANQMTGDLEKLFT 1009
S+ ++ WI+DSGA MT + F+
Sbjct: 278 ATSSK---GERRLNDVWIMDSGATWHMTPHRDWFFS 310
>gb|AAG60117.1|AC073555_1 copia-type polyprotein, putative [Arabidopsis thaliana]
Length = 1352
Score = 166 bits (419), Expect(2) = 4e-45
Identities = 103/337 (30%), Positives = 171/337 (50%), Gaps = 1/337 (0%)
Frame = -2
Query: 1009 KMEYKGSRMVVTVHNTRDTVIVPRRNPHKVELQNVMHVEAIKKNLLPVSLLTAT*NYVVF 830
KME KG + +++ +N + NV ++ ++K N+L + L +
Sbjct: 370 KMEVKG----------KGNILIRLKNGDHQFISNVYYIPSMKTNILSLGQLLEKGYDIRL 419
Query: 829 CPHDVKVYRDVKITGTPILEEEKQESVYVMLAEAAYVEKSRKNETTYLWHARLGHVTYKR 650
+++ + T + + + V + + A K E ++LWH R GH+ +
Sbjct: 420 KDNNLSIRDQESNLITKVPMSKNRMFVLNIRNDIAQCLKMCYKEESWLWHLRFGHLNFGG 479
Query: 649 LKVTMIKSVLKGLPNLEVRDESICADCQDKKTHQLSY-YESKYGARQPLELIHSVVLGPV 473
L++ K +++GLP + +C C K ++S+ ES A++ LELIH+ V GP+
Sbjct: 480 LELLSRKEMVRGLPCIN-HPNQVCEGCLLGKQFKMSFPKESSSRAQKSLELIHTDVCGPI 538
Query: 472 KQPSFGGFRYMMTFINHYSKYAWVYFMKEKLETCDILKSFKREVEQDIGRKICCLRTDNG 293
K S G Y + FI+ +S+ WVYF+KEK E +I K FK VE++ G I +R+D G
Sbjct: 539 KPKSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFEIFKKFKAHVEKESGLVIKTMRSDRG 598
Query: 292 GEYISQEFSKFLRENKI*RQLSCPRTLHQMEVAKKTNPHLAETCRSLLHDKNVRPEYWAD 113
GE+ S+EF K+ +N I RQL+ PR+ Q VA++ N + E RS+L K + E WA+
Sbjct: 599 GEFTSKEFLKYCEDNGIRRQLTVPRSPQQNGVAERKNRTILEMARSMLKSKRLPKELWAE 658
Query: 112 CTRTVAHVINRLP*AKLGFKSTFEKLWNVRPIVSHFR 2
+++NR P + K+ E + VSH R
Sbjct: 659 AVACAVYLLNRSPTKSVSGKTPQEAWSGRKSGVSHLR 695
Score = 45.1 bits (105), Expect(2) = 4e-45
Identities = 46/176 (26%), Positives = 70/176 (39%), Gaps = 14/176 (7%)
Frame = -3
Query: 1515 EQESLAKQAASMTIKDEEQAL---------YNGQGRGGSKRNPELGKSKGYR----RFNR 1375
++E + +Q +M I EE G+GRGG G +G+R N+
Sbjct: 203 KKEDIIEQVLNMQITKEENGQSYQRRGGGQVRGRGRGG------YGNGRGWRPHEDNTNQ 256
Query: 1374 QPEKSQQEGGAEDSEGEYKNSNNGRCYNRGKKGHNARDC*S-KKKKLVEGNVAISEAHEN 1198
+ E S + G + Y S+ +CYN GK GH A +C + KK E + E +
Sbjct: 257 RGENSSRGRGKGHPKSRYDKSSV-KCYNCGKFGHYASECKAPSNKKFEEKANYVEEKIQE 315
Query: 1197 HRMTTGI*SNPCVGRASSEVHANYAVAEDSTTILVKTIPISYKWIVDSGAANQMTG 1030
M + A+Y E ++KW +DSGA+N M G
Sbjct: 316 EDML---------------LMASYKKDEQEE---------NHKWYLDSGASNHMCG 347
>dbj|BAB01972.1| copia-like retrotransposable element [Arabidopsis thaliana]
Length = 1499
Score = 171 bits (433), Expect(2) = 5e-45
Identities = 107/312 (34%), Positives = 173/312 (55%), Gaps = 7/312 (2%)
Frame = -2
Query: 916 LQNVMHVEAIKKNLLPVSLLTAT*NYVVFCPHDVK-VYRDVKITGTPILEEEKQESVYVM 740
+++V++V + +NLL VS + + V+F D K V +D+K G IL+ + ++ + +
Sbjct: 379 IKDVLYVPELARNLLSVSQMISNGYRVIF--EDNKCVIQDLK--GRKILDIKMKDRSFPI 434
Query: 739 L----AEAAYVEKSRKNETTYLWHARLGHVTYKRLKVTMIKSVLKGLPNLEVRDESICAD 572
+ E Y+ K E T LWH R GHV Y +++ +++ LP EV + ICA
Sbjct: 435 IWKKSREETYMAFEEKEEQTDLWHKRFGHVNYDKIETMQTLKIVEKLPKFEV-IKGICAA 493
Query: 571 CQDKKTHQLSY-YESKYGARQPLELIHSVVLGPVKQPSFGGFRYMMTFINHYSKYAWVYF 395
C+ K + S+ +S+ + LELIHS V GP++ S G RY +TFI+ +S+ WVYF
Sbjct: 494 CEMGKQSRRSFPKKSQSNTNKTLELIHSDVCGPMQTESINGSRYFLTFIDDFSRMTWVYF 553
Query: 394 MKEKLETCDILKSFKREVEQDIGRKICCLRTDNGGEYISQEFSKFLRENKI*RQLSCPRT 215
+K K E K FK VE +I LRTD GGE++S+EF K +E+ I +++ P +
Sbjct: 554 LKNKSEVITKFKIFKPYVENQSESRIKRLRTDGGGEFLSREFIKLCQESGIHHEITTPYS 613
Query: 214 LHQMEVAKKTNPHLAETCRSLLHDKNVRPEYWADCTRTVAHVINRLP*AKLGFKSTFEKL 35
Q VA++ N L E RS++ +K + ++WA+ T ++ NRLP L T ++
Sbjct: 614 PQQNGVAERRNRTLVEMARSMIEEKKLSNKFWAEAIATSTYLQNRLPSKSLEKGVTPMEI 673
Query: 34 WN-VRPIVSHFR 2
W+ +P V H +
Sbjct: 674 WSGKKPSVDHLK 685
Score = 39.3 bits (90), Expect(2) = 5e-45
Identities = 32/120 (26%), Positives = 50/120 (41%)
Frame = -3
Query: 1383 FNRQPEKSQQEGGAEDSEGEYKNSNNGRCYNRGKKGHNARDC*SKKKKLVEGNVAISEAH 1204
F ++ E Q GG+ + RCY K+GH ARDC K +K +++I E+
Sbjct: 250 FRKKSESISQRGGSYER----------RCYVCDKQGHIARDC--KLRKGERAHLSIEESE 297
Query: 1203 ENHRMTTGI*SNPCVGRASSEVHANYAVAEDSTTILVKTIPISYKWIVDSGAANQMTGDL 1024
+ E H ++ E+ + TI W+VDSG N M+ D+
Sbjct: 298 D---------------EKEDECHMLFSAVEEKE---ISTIG-EETWLVDSGCTNHMSKDV 338
>gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 167 bits (424), Expect(2) = 6e-45
Identities = 104/308 (33%), Positives = 165/308 (53%), Gaps = 7/308 (2%)
Frame = -2
Query: 919 ELQNVMHVEAIKKNLLPVSLLTAT*NYVVFCPHDVK--VYRDVKITGTPILEEEKQESVY 746
++Q V HV+ +KKNLL V L + C + + + VK + E+ ++Y
Sbjct: 346 KIQGVRHVKGLKKNLLSVGQLDD-----LGCKIHTESGILKVVKGNLVVMKAEKITSNLY 400
Query: 745 VMLAEA-----AYVEKSRKNETTYLWHARLGHVTYKRLKVTMIKSVLKGLPNLEVRDESI 581
++L + A V S + ETT +WH RLGH++ + LKV +++L GL + +
Sbjct: 401 MLLGDTLQEADASVAASSQEETTMMWHQRLGHMSERGLKVLAERNLLHGLKAVNL---PF 457
Query: 580 CADCQDKKTHQLSYYESKYGARQPLELIHSVVLGPVKQPSFGGFRYMMTFINHYSKYAWV 401
C C K H+L + ++ L+LIHS V + S GG RY ++FI+ YS+ WV
Sbjct: 458 CEHCVISKQHRLKFARVTTRSKHILDLIHSDVWES-PEISLGGARYFVSFIDDYSRRLWV 516
Query: 400 YFMKEKLETCDILKSFKREVEQDIGRKICCLRTDNGGEYISQEFSKFLRENKI*RQLSCP 221
Y +K+K + + K+FK ++E + +KI CLRTDNGGEYI EF F ++ I RQ +
Sbjct: 517 YPIKKKSDVFPVFKAFKAQIELETRKKIKCLRTDNGGEYIDGEFLAFCKQEGIVRQFTVA 576
Query: 220 RTLHQMEVAKKTNPHLAETCRSLLHDKNVRPEYWADCTRTVAHVINRLP*AKLGFKSTFE 41
T Q VA++ N L E R++L + +WA+ +T +VINR P + K+ E
Sbjct: 577 HTPQQNGVAERMNRTLLERTRAMLKTAGMAKSFWAEAVKTACYVINRSPSTAIDLKTPME 636
Query: 40 KLWNVRPI 17
+W +P+
Sbjct: 637 -MWKGKPV 643
Score = 42.4 bits (98), Expect(2) = 6e-45
Identities = 41/156 (26%), Positives = 61/156 (39%)
Frame = -3
Query: 1476 IKDEEQALYNGQGRGGSKRNPELGKSKGYRRFNRQPEKSQQEGGAEDSEGEYKNSNNGRC 1297
I +EE N + R S + E R R P SQ G ++ + N +C
Sbjct: 176 ILEEESRRKNKEERSESSKQAEALTMTRGRSTERGPSGSQNHGRSKS-----RRKKNIKC 230
Query: 1296 YNRGKKGHNARDC*SKKKKLVEGNVAISEAHENHRMTTGI*SNPCVGRASSEVHANYAVA 1117
Y G KGH ++C + KK +N +T S CV S + Y+ A
Sbjct: 231 YGCGMKGHVKKECWNIKK----------NGEKNSEAST---SQGCVASTSDDGEILYSEA 277
Query: 1116 EDSTTILVKTIPISYKWIVDSGAANQMTGDLEKLFT 1009
S+ ++ WI+DSGA MT + F+
Sbjct: 278 ATSSK---GERRLNDVWIMDSGATWHMTPHRDWFFS 310
>gb|AFB73912.1| polyprotein [Citrus sinensis]
Length = 1309
Score = 156 bits (395), Expect(2) = 3e-44
Identities = 98/305 (32%), Positives = 160/305 (52%), Gaps = 6/305 (1%)
Frame = -2
Query: 916 LQNVMHVEAIKKNLLPVSLLTAT*NYVVFCPHDVK--VYRDVKITGTPILEEEKQESVYV 743
++ V HV +KKNLL + + + C V+ + + VK + E+ ++++
Sbjct: 348 IEEVRHVNGLKKNLLSLGQMDSH-----GCKTHVENGIMKIVKGALVLMKAEKICANLFM 402
Query: 742 M----LAEAAYVEKSRKNETTYLWHARLGHVTYKRLKVTMIKSVLKGLPNLEVRDESICA 575
+ L EA S E+T +WH +LGH++ + LK+ + + GL ++ + C
Sbjct: 403 LKGETLQEADACVASNGEESTMMWHLKLGHMSEQGLKILSERKLPPGLKSVSL---PFCE 459
Query: 574 DCQDKKTHQLSYYESKYGARQPLELIHSVVLGPVKQPSFGGFRYMMTFINHYSKYAWVYF 395
C K H+L + S ++ L+LIHS V S GG +YM+TFI+ YS+ WVY
Sbjct: 460 HCVTSKQHRLKFSRSIARSKCILDLIHSDVWES-PDISMGGAKYMVTFIDDYSRRCWVYP 518
Query: 394 MKEKLETCDILKSFKREVEQDIGRKICCLRTDNGGEYISQEFSKFLRENKI*RQLSCPRT 215
+K+K + + K +K VE + G+KI CLRTDNGGEY EF F ++ I RQ + T
Sbjct: 519 IKKKSDVFPVFKEYKAWVELESGKKIKCLRTDNGGEYTDSEFLAFCKQEGIQRQFTVAYT 578
Query: 214 LHQMEVAKKTNPHLAETCRSLLHDKNVRPEYWADCTRTVAHVINRLP*AKLGFKSTFEKL 35
Q VA++ N L E R++L + +WA+ +T +++NR P +G K+ E +
Sbjct: 579 PQQNGVAERMNRTLTERIRAMLRTAGLPNSFWAEAAKTACYIVNRSPSTAIGLKTAME-M 637
Query: 34 WNVRP 20
W +P
Sbjct: 638 WTGKP 642
Score = 51.2 bits (121), Expect(2) = 3e-44
Identities = 47/184 (25%), Positives = 75/184 (40%)
Frame = -3
Query: 1560 LANTTNSERIRKYVAEQESLAKQAASMTIKDEEQALYNGQGRGGSKRNPELGKSKGYRRF 1381
+ N TN+ + +SL + ++ +EE N + R S + E R
Sbjct: 155 IINLTNNNPV-------DSLVFDDVAASVLNEESRRKNKENRQASSQQAEALSVTRGRST 207
Query: 1380 NRQPEKSQQEGGAEDSEGEYKNSNNGRCYNRGKKGHNARDC*SKKKKLVEGNVAISEAHE 1201
R P SQ G ++ ++ N +CYN GKKGH ++C S +K+ EG S +
Sbjct: 208 ERGPSGSQNHGRSKS-----RSKKNVKCYNCGKKGHVKKECWSNQKRR-EGKEPESSNAQ 261
Query: 1200 NHRMTTGI*SNPCVGRASSEVHANYAVAEDSTTILVKTIPISYKWIVDSGAANQMTGDLE 1021
CV S + Y+ ++T + +S W++DSGA MT E
Sbjct: 262 G-----------CVASTSDDGEILYS---EATIVSEGRKRLSDVWLIDSGATWHMTSRRE 307
Query: 1020 KLFT 1009
T
Sbjct: 308 WFHT 311
>gb|ABR16307.1| unknown [Picea sitchensis]
Length = 407
Score = 180 bits (457), Expect = 2e-42
Identities = 108/307 (35%), Positives = 169/307 (55%), Gaps = 6/307 (1%)
Frame = -2
Query: 904 MHVEAIKKNLLPVSLLTAT*NYVVFCPHDVKVYRDV----KITGTPILEEEKQESVYVML 737
M V +K NLL V+ + A Y V D + +D+ K+ + +E +
Sbjct: 1 MLVPNLKSNLLSVNQI-ANQGYKVEFYKDKCLIKDINSNYKVVASGYVENGLYKFGRFTS 59
Query: 736 AEAAYVEKSRKNETTYLWHARLGHVTYKRLKVTMIKSVLKGLPNLEVRDESICADCQDKK 557
E A V + + + LWH R+GH+ YK L + ++ GLP + + + +C C K
Sbjct: 60 NEKALV--AEVDNVSRLWHERMGHLNYKSLSLMKRFEMVYGLPKIS-QSQGVCEGCMSGK 116
Query: 556 THQLSYYESK-YGARQPLELIHSVVLGPVKQPSFGGFRYMMTFINHYSKYAWVYFMKEKL 380
H + + K + A+ PL L+HS ++GP++ PS G RY++TFI+ YS+ WVYF+K K
Sbjct: 117 QHMEKFIKGKSWRAKTPLHLVHSDLMGPLEHPSISGSRYVLTFIDDYSRRIWVYFLKNKD 176
Query: 379 ETCDILKSFKREVEQDIGRKICCLRTDNGGEYISQEFSKFLRENKI*RQLSCPRTLHQME 200
E + K FK VE+ G+ I LRTDNG EY+++EF + + N I R+ + P T Q
Sbjct: 177 EVFEKFKEFKAFVEKQSGKSIKILRTDNGKEYVNKEFDHYCKYNGIKREHTVPYTPQQNG 236
Query: 199 VAKKTNPHLAETCRSLLHDKNVRPEYWADCTRTVAHVINRLP*AKLGFKSTFEKLWNVR- 23
VA++ N L E R +LH +N+ P++WA+ T +++NR P + K T E+ W+ R
Sbjct: 237 VAERKNRTLMEMARCMLHARNMDPKFWAEAINTATYIVNRTPTIAVKHK-TPEEAWSRRK 295
Query: 22 PIVSHFR 2
P VSHF+
Sbjct: 296 PTVSHFK 302
>dbj|BAD34493.1| Gag-Pol [Ipomoea batatas]
Length = 1298
Score = 166 bits (421), Expect(2) = 4e-42
Identities = 99/306 (32%), Positives = 167/306 (54%), Gaps = 6/306 (1%)
Frame = -2
Query: 916 LQNVMHVEAIKKNLLPVSLLTAT*NYVVFCPHDVKVYRDVKITGTPILEEEK-QESVYVM 740
+Q+V HV+ +KKNLL +L + + +K+++ + +++ EK ++Y++
Sbjct: 338 VQDVRHVKGLKKNLLSYGILDNSATQIETQKGVMKIFQGALV----VMKGEKIAANLYML 393
Query: 739 ----LAEAAYVEKSRKNETTYLWHARLGHVTYKRLKVTMIKSVLKGLPNLEVRDESICAD 572
L EA + ++T LWH +LGH++ + +K+ + + ++ GL + + +C
Sbjct: 394 KGETLQEAEASVAACSPDSTLLWHQKLGHMSDQGMKILVEQKLIPGLTKVSL---PLCEH 450
Query: 571 CQDKKTHQLSYYESKYGARQPLELIHSVVL-GPVKQPSFGGFRYMMTFINHYSKYAWVYF 395
C K H+L + S + LEL+HS V PV PS GG +Y ++FI+ YS+ WVY
Sbjct: 451 CITSKQHRLKFSTSNSRGKVVLELVHSDVWQAPV--PSLGGAKYFVSFIDDYSRRCWVYP 508
Query: 394 MKEKLETCDILKSFKREVEQDIGRKICCLRTDNGGEYISQEFSKFLRENKI*RQLSCPRT 215
+K+K + K+FK VE D G+KI C RTDNGGEY S+EF F ++ I RQ + T
Sbjct: 509 IKKKSDVFATFKAFKARVELDSGKKIKCFRTDNGGEYTSEEFDDFCKKEGIKRQFTVAYT 568
Query: 214 LHQMEVAKKTNPHLAETCRSLLHDKNVRPEYWADCTRTVAHVINRLP*AKLGFKSTFEKL 35
Q VA++ N L E R++L + +WA+ T +++NR P + K+ E +
Sbjct: 569 PQQNGVAERMNRTLLERTRAMLRAAGLEKSFWAEAVNTACYLVNRAPSTAIELKTPME-M 627
Query: 34 WNVRPI 17
W +P+
Sbjct: 628 WTGKPV 633
Score = 34.3 bits (77), Expect(2) = 4e-42
Identities = 37/137 (27%), Positives = 53/137 (38%), Gaps = 9/137 (6%)
Frame = -3
Query: 1404 KSKGYRRFNRQPEKS-------QQEGGAEDSEGEYKNSN-NGRCYNRGKKGHNARDC*S- 1252
K+K R+ N Q ++ E G G K+S N CYN GKKGH +DC +
Sbjct: 185 KNKEDRQVNLQQAEALTVMRGRSTERGQSSGRGRSKSSKKNLTCYNCGKKGHLKKDCWNL 244
Query: 1251 KKKKLVEGNVAISEAHENHRMTTGI*SNPCVGRASSEVHANYAVAEDSTTILVKTIPISY 1072
+ +GNVA S + + + C + E +A
Sbjct: 245 AQNSNPQGNVA-STSDDGSALC-------CEASIAREGRKRFADI--------------- 281
Query: 1071 KWIVDSGAANQMTGDLE 1021
W++DSGA MT E
Sbjct: 282 -WLIDSGATYHMTSRKE 297
>emb|CCI55340.1| PH01B019A14.9 [Phyllostachys edulis]
Length = 1594
Score = 151 bits (382), Expect(2) = 3e-40
Identities = 88/334 (26%), Positives = 164/334 (49%), Gaps = 3/334 (0%)
Frame = -2
Query: 994 GSRMVVTVHNTRDTVIVPRRNPHKVELQNVMHVEAIKKNLLPVSLLTAT*NYVVFCPHDV 815
G V + V V + H++ L V ++ A++ +++ + L + V +
Sbjct: 542 GDASAVEIKGVGSVVFVAKTGEHRL-LTGVYYIPALRNSIISLGQLDENGSRVEIEHGVL 600
Query: 814 KVYRDVKITGTPILEEEKQESVYVMLAEAAY--VEKSRKNETTYLWHARLGHVTYKRLKV 641
+++ + +++ + +YV+ A+ A +R+++ + WH R GH+ ++ L+
Sbjct: 601 RIWDHSRRL---LVKVNRSNRLYVLHAQVAQPLCLAARRDDDAWRWHERFGHLNFEALRQ 657
Query: 640 TMIKSVLKGLPNLEVRDESICADCQDKKTHQLSY-YESKYGARQPLELIHSVVLGPVKQP 464
K +++G+P+++ E C C K +L + ++ + A++ LEL+H + GPV
Sbjct: 658 LGSKEMVRGMPHVD-HVEQFCDTCVLTKLRRLPFPRQASFRAKEKLELVHGDLCGPVTPA 716
Query: 463 SFGGFRYMMTFINHYSKYAWVYFMKEKLETCDILKSFKREVEQDIGRKICCLRTDNGGEY 284
+ GG RY + ++ S+Y W + K D +K + E + GRK+ LRTDNGGE+
Sbjct: 717 TPGGRRYFLLLVDDVSRYMWAVLLDVKASAADAIKCLQAAAEAECGRKLRVLRTDNGGEF 776
Query: 283 ISQEFSKFLRENKI*RQLSCPRTLHQMEVAKKTNPHLAETCRSLLHDKNVRPEYWADCTR 104
+ EF+ + I R S P T Q V ++ N + T R+LL + + YW +
Sbjct: 777 TAAEFAAYCANEGIHRHFSAPYTPQQNGVVERRNQTVVATARALLKQRGMPAFYWGEAVM 836
Query: 103 TVAHVINRLP*AKLGFKSTFEKLWNVRPIVSHFR 2
T H++NR P L K+ +E +P VSH R
Sbjct: 837 TAVHLLNRSPTKALDGKTPYEAWHGRKPAVSHLR 870
Score = 42.7 bits (99), Expect(2) = 3e-40
Identities = 41/159 (25%), Positives = 72/159 (45%), Gaps = 8/159 (5%)
Frame = -3
Query: 1473 KDEEQALYNGQGRGGSKRNPELGKSKGYRRFNRQPEKSQQEGGAED-SEGEYKNSNNGRC 1297
K E + G+ RG +++ + G R + GGA+ + G+ K + + C
Sbjct: 383 KGEPSSTTGGRKRGKPRKDAQAGA--------RGRAEGDDRGGAQGGAAGKQKPARDDSC 434
Query: 1296 YNRGKKGHNARDC*SKKKKLVEGNVAISEAHENHRM---TTGI*SNPCVGRASSEVHAN- 1129
+N GK GH ARDC ++ + + +VA +E E + I P A++ +H +
Sbjct: 435 HNCGKPGHWARDC--RQPRRGQAHVAQAEEEEQPALFIAHASIELPPAAPAAAALLHLDE 492
Query: 1128 ---YAVAEDSTTILVKTIPISYKWIVDSGAANQMTGDLE 1021
+A+ DS+ + W +D+GA + MTG E
Sbjct: 493 PKAHALLGDSS-----GNDKTDGWCLDTGATHHMTGRRE 526
>gb|AAT07563.1| putative polyprotein [Oryza sativa Japonica Group]
gi|46981313|gb|AAT07631.1| putative polyprotein [Oryza
sativa Japonica Group]
Length = 1431
Score = 160 bits (406), Expect(2) = 4e-40
Identities = 110/342 (32%), Positives = 167/342 (48%), Gaps = 6/342 (1%)
Frame = -2
Query: 1027 LRKVIYKMEYKGSRMVVTVHNTRDTV------IVPRRNPHKVELQNVMHVEAIKKNLLPV 866
L K+ K YKG+ + T ++ IVP + H + L+NV+HV KNL+ V
Sbjct: 327 LDKLTTKERYKGTDQIHTASGEGTSIKHVGHAIVPTPS-HPLHLKNVLHVPEAAKNLVSV 385
Query: 865 SLLTAT*NYVVFCPHDVKVYRDVKITGTPILEEEKQESVYVMLAEAAYVEKSRKNETTYL 686
L A NY H K T ILE + +Y + A ++ + +
Sbjct: 386 HKLVAD-NYAFLEIHGKYFLIKDKATRRTILEGPCRRGLYPLPARSSLRQAFVATPSFVR 444
Query: 685 WHARLGHVTYKRLKVTMIKSVLKGLPNLEVRDESICADCQDKKTHQLSYYESKYGARQPL 506
WH RLGH + + + ++ L L N +ES+C CQ K HQL + S + PL
Sbjct: 445 WHGRLGHPSKPIVLRILSQNKLPCLSNSV--NESVCDACQQAKCHQLPFPRSTSVSNNPL 502
Query: 505 ELIHSVVLGPVKQPSFGGFRYMMTFINHYSKYAWVYFMKEKLETCDILKSFKREVEQDIG 326
ELIHS V GP + S G +Y ++FI+ YSK+ W+YF+K K E F++ VE+
Sbjct: 503 ELIHSDVWGPASE-SVGAKKYYVSFIDDYSKFVWIYFLKHKSEVFQKFHEFQKLVERQFD 561
Query: 325 RKICCLRTDNGGEYISQEFSKFLRENKI*RQLSCPRTLHQMEVAKKTNPHLAETCRSLLH 146
RKI ++TD GGEY+ + F E I +SCP T Q ++ + H+ E SLL
Sbjct: 562 RKILSMQTDWGGEYL--KLHTFFNEIGISHHVSCPHTHQQNGAVERKHRHIVEVGLSLLA 619
Query: 145 DKNVRPEYWADCTRTVAHVINRLP*AKLGFKSTFEKLWNVRP 20
++ ++W + ++INRLP + F + E+L+ P
Sbjct: 620 HASMPLKFWDEAFLAATYLINRLPSKVIKFDTPLERLFKQTP 661
Score = 33.1 bits (74), Expect(2) = 4e-40
Identities = 42/152 (27%), Positives = 51/152 (33%), Gaps = 1/152 (0%)
Frame = -3
Query: 1458 ALYNGQGRGGSKRNPELGKSKGYRR-FNRQPEKSQQEGGAEDSEGEYKNSNNGRCYNRGK 1282
A G GRGG R G G R F R GA G N C K
Sbjct: 221 AANRGGGRGG--RGSSTGNRGGGRGGFGRGGHGRGAPSGASQGRGR-GNDTRPVCQVCHK 277
Query: 1281 KGHNARDC*SKKKKLVEGNVAISEAHENHRMTTGI*SNPCVGRASSEVHANYAVAEDSTT 1102
+GH A DC HR + +G A A YA D+
Sbjct: 278 RGHVASDCW-------------------HRYDDSYVPDEKLGGA-----ATYAYGVDTN- 312
Query: 1101 ILVKTIPISYKWIVDSGAANQMTGDLEKLFTR 1006
W VD+GA + +TG L+KL T+
Sbjct: 313 -----------WYVDTGATDHITGQLDKLTTK 333