BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Catharanthus22_contig00017142
         (3198 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAG52949.1| gag/pol polyprotein [Arabidopsis thaliana]             148   1e-92
gb|AAP53706.1| retrotransposon protein, putative, unclassified [...   144   2e-84
gb|ABA93940.1| retrotransposon protein, putative, Ty1-copia subc...   140   8e-82
gb|AAO73523.1| gag-pol polyprotein [Glycine max]                      175   1e-81
gb|AAO73527.1| gag-pol polyprotein [Glycine max]                      175   2e-81
gb|AAO73521.1| gag-pol polyprotein [Glycine max]                      175   2e-81
gb|AAL31657.1|AC079179_12 Putative Zea mays retrotransposon Opie...   141   5e-81
gb|ABA98847.1| retrotransposon protein, putative, unclassified [...   137   1e-80
gb|AAX96565.1| retrotransposon protein, putative, Ty1-copia sub-...   137   4e-80
gb|AAX96236.1| retrotransposon protein, putative, Ty1-copia sub-...   135   1e-79
gb|AAO73525.1| gag-pol polyprotein [Glycine max]                      168   2e-79
gb|AAO73529.1| gag-pol polyprotein [Glycine max]                      168   5e-79
gb|AAM08523.1|AC068654_25 Putative retroelement [Oryza sativa Ja...   134   6e-79
gb|AAN40030.1| putative gag-pol polyprotein [Zea mays]                136   1e-78
gb|AAX95391.1| Integrase core domain, putative [Oryza sativa Jap...   141   2e-78
gb|ABA98369.1| retrotransposon protein, putative, Ty1-copia subc...   143   8e-78
gb|AAR10863.1| putative copia-type pol polyprotein [Oryza sativa...   134   8e-78
gb|ABF97245.1| retrotransposon protein, putative, Ty1-copia subc...   134   8e-78
ref|NP_001183750.1| uncharacterized protein LOC100502343 [Zea ma...   127   9e-77
gb|AAC64917.1| gag-pol polyprotein [Glycine max]                      165   1e-76

>gb|AAG52949.1| gag/pol polyprotein [Arabidopsis thaliana]
          Length = 1643

 Score =  147 bits (371), Expect(5) = 1e-92
 Identities = 71/113 (62%), Positives = 85/113 (75%)
 Frame = -2

Query: 1061 IQEELQQFERNNVWELVTRPEGVNVIGTEWIFRNKTDEEGSIISNKVRLVTQGYTQVEGL 882
            ++EEL++F R+ VW+LV RP  VNVIGT+WIF+NK DE G+I  NK RLV QGYTQVEGL
Sbjct: 1153 MEEELEEFSRHQVWDLVPRPPQVNVIGTKWIFKNKFDEVGNITRNKARLVAQGYTQVEGL 1212

Query: 881  DFDEAFAPVTRLESVRLLVYIACAKNFTLQ*MDVKSAFLNRILQKEAYVEHQK 723
            DFDE FAPV RLE +R L+  AC   F L  MDVK AFLN I+++E YVE  K
Sbjct: 1213 DFDETFAPVARLECIRFLLGTACGMGFKLHQMDVKCAFLNGIIEEEVYVEQPK 1265



 Score =  134 bits (337), Expect(5) = 1e-92
 Identities = 62/126 (49%), Positives = 91/126 (72%)
 Frame = -1

Query: 729  PKGFVNPKYPDHVYKLKRALYRLKQAPKA*YKRFTNYLLNKRYIRGSANKNMFIKHSAQH 550
            PKGF N ++P++VYKLK+ALY LKQAP+A Y+R T +L+ + Y RGS +K +F+K+    
Sbjct: 1264 PKGFENLEFPEYVYKLKKALYGLKQAPRAWYERLTTFLIVQGYTRGSVDKTLFVKNDVHG 1323

Query: 549  VLIAHIYFNDIVFGSTSKELTEEFITSIRTEFEMSMVGELTFFISLQVRQIKEDKFLSQA 370
            ++I  IY +DIVFG TS +L + F+ ++ TEF MSMVGEL +F+ LQ+ Q  E   +SQ+
Sbjct: 1324 IIIIQIYVDDIVFGGTSDKLVKTFVKTMTTEFRMSMVGELKYFLGLQINQTDEGITISQS 1383

Query: 369  KYAKKI 352
             YA+ +
Sbjct: 1384 TYAQNL 1389



 Score =  102 bits (255), Expect(5) = 1e-92
 Identities = 54/105 (51%), Positives = 70/105 (66%)
 Frame = -2

Query: 359  KKLVKKFGLEYGKIVRTPMSTTLNINKDEKGVSVDQHEYQSMIDGLLCLTASRLDILYNV 180
            + LVK+FG+   K   TPMSTT  + KDEKGV VD+  Y+ MI  LL LTA+R D+  +V
Sbjct: 1387 QNLVKRFGMCSSKPAPTPMSTTTKLFKDEKGVKVDEKLYRGMIGSLLYLTATRPDLCLSV 1446

Query: 179  RECARYQVDPKESHKKAVKRILRYILSTTEHGLFYSEDITTHLVG 45
              CARYQ +PK SH  AVKRI++Y+  T  +GL Y+ D +  LVG
Sbjct: 1447 GLCARYQSNPKASHLLAVKRIIKYVSGTINYGLNYTRDTSLVLVG 1491



 Score = 25.0 bits (53), Expect(5) = 1e-92
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -1

Query: 45   YSDADWAVNCNDRKS 1
            Y DADW  N +DR+S
Sbjct: 1492 YCDADWGGNLDDRRS 1506



 Score = 23.9 bits (50), Expect(5) = 1e-92
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -3

Query: 1120 STLEPKNVKEALSAEY 1073
            S +EPKNVKEAL   +
Sbjct: 1133 SIVEPKNVKEALEDHF 1148



 Score =  148 bits (374), Expect(3) = 2e-68
 Identities = 74/167 (44%), Positives = 108/167 (64%), Gaps = 13/167 (7%)
 Frame = -3

Query: 1894 IQTEKNTTLKRLSSDHGKEFDTS-------------QFLASKTPQQNGVVERKNITVQDM 1754
            ++ EK   +K++ SD G EF                Q+ A +TPQ NGVVERKN T+Q+M
Sbjct: 854  LKNEKKMGIKQIRSDRGGEFMNEAFNSFCESQGIFHQYSAPRTPQSNGVVERKNRTLQEM 913

Query: 1753 IHVMLNSKELSHSWWAEVPNTSIRITNRVFFRPMMNKTTYEIWKGKKPKLSYPYMFGSKC 1574
               M++   +   +WAE  +T+  + NRV+ R   +KT YEIWKGKKP LSY  +FG  C
Sbjct: 914  ARAMIHGNGVPEKFWAEAISTACYVINRVYVRLGSDKTPYEIWKGKKPNLSYFRVFGCVC 973

Query: 1573 YILNDREHLGKFDARSDEEIFLGYSSSSHAYRVFNRRTRIVIETINL 1433
            YI+ND++ LGKFD+RS+E  FLGY+++S AYRV+N++   + E++N+
Sbjct: 974  YIMNDKDQLGKFDSRSEEGFFLGYATNSLAYRVWNKQRGKIEESMNV 1020



 Score =  126 bits (317), Expect(3) = 2e-68
 Identities = 77/227 (33%), Positives = 119/227 (52%), Gaps = 5/227 (2%)
 Frame = -1

Query: 2544 KDSVIFGDSVKNRVVGVGTVNVAGMLKLSNVLHIEGMKANLISISQLCDDNDFSVYFDKR 2365
            + +V+FG   K R+ G G +       L+NV  +EG+ ANLIS+SQLCD+   +V F+K 
Sbjct: 639  ESNVMFGGGAKGRIKGKGDLTETEKPHLTNVYFVEGLTANLISVSQLCDEG-LTVSFNKV 697

Query: 2364 QRCA-NK**QVHHSRIKKS*QLL----PDECYEGTYMSDWAKWRSRTVV**LGHVNYKHL 2200
            +  A N+  Q   + ++          P  C       D   W  R     LGH+N + +
Sbjct: 698  KCWATNERNQNTLTGVRTGNNCYMWEEPKICLRAE-KEDPVLWHQR-----LGHMNARSM 751

Query: 2199 HKLGSKQIVKEIPQFKKERKLLCEDCQIGKPIRAKHIQVGDITKINILDLMHIDLFGPTQ 2020
             KL +K++V+ +P+ K   K++C  C  GK IR +H +V  I    +LDL+H+DL GP Q
Sbjct: 752  SKLVNKEMVRGVPELKHIEKIVCGACNQGKQIRVQHKRVEGIQTTQVLDLIHMDLMGPMQ 811

Query: 2019 VESTGGKMYALVCVDDYLTYTWIDFLGNKVDLFLAFRKICLAFRQRR 1879
             ES  GK Y  V VDD+  Y W+ F+  K +   +F+ + L  +  +
Sbjct: 812  TESIAGKRYVFVLVDDFSRYAWVRFIREKSETANSFKILALQLKNEK 858



 Score = 35.4 bits (80), Expect(3) = 2e-68
 Identities = 22/75 (29%), Positives = 39/75 (52%)
 Frame = -3

Query: 2776 HQYYKRIGDLKQGRILHTHVLTKGEVKMAMDLDQNELRCNVAHLSLSANFGDV*YLDSGC 2597
            ++Y  R+  LK+   L+ H     +    M + + +L C+VA+ S++       Y DSG 
Sbjct: 565  YRYAARLSKLKRQGKLYPHQGRNSK----MYVRREDLYCHVAYTSIAEGVKKPWYFDSGA 620

Query: 2596 LRHMTRNKEYLVDYT 2552
             RHMT ++  L +Y+
Sbjct: 621  SRHMTGSQANLNNYS 635


>gb|AAP53706.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1419

 Score =  144 bits (364), Expect(3) = 2e-84
 Identities = 68/110 (61%), Positives = 85/110 (77%)
 Frame = -2

Query: 1061 IQEELQQFERNNVWELVTRPEGVNVIGTEWIFRNKTDEEGSIISNKVRLVTQGYTQVEGL 882
            + EEL+ FERN VW LV  P G NVIGT+W+F+NK +E+G I+ NK RLV QG+TQVEGL
Sbjct: 926  MHEELENFERNKVWTLVEPPSGHNVIGTKWVFKNKQNEDGLIVRNKARLVAQGFTQVEGL 985

Query: 881  DFDEAFAPVTRLESVRLLVYIACAKNFTLQ*MDVKSAFLNRILQKEAYVE 732
            DFDE FAPV R+E++RLL+  A +K F L  MDVKSAFLN  +Q+E YV+
Sbjct: 986  DFDETFAPVARIEAIRLLLAFAASKGFKLYQMDVKSAFLNGFIQEEVYVK 1035



 Score =  122 bits (307), Expect(3) = 2e-84
 Identities = 55/128 (42%), Positives = 84/128 (65%)
 Frame = -1

Query: 735  RTPKGFVNPKYPDHVYKLKRALYRLKQAPKA*YKRFTNYLLNKRYIRGSANKNMFIKHSA 556
            + P GF NP +P+HV+KL +ALY LKQAP+A Y R  N+LL K +  G  +K +F+    
Sbjct: 1035 KQPPGFENPDFPNHVFKLSKALYGLKQAPRAWYDRLKNFLLAKGFTMGKVDKTLFVLKHG 1094

Query: 555  QHVLIAHIYFNDIVFGSTSKELTEEFITSIRTEFEMSMVGELTFFISLQVRQIKEDKFLS 376
             + L   IY +DI+FG ++  +  +F  ++R EFEMSM+GEL++F+ LQ++Q  +  F+ 
Sbjct: 1095 DNQLFVQIYVDDIIFGCSTHAVVVDFAETMRREFEMSMMGELSYFLGLQIKQTPQGTFVH 1154

Query: 375  QAKYAKKI 352
            Q KY K +
Sbjct: 1155 QTKYTKDL 1162



 Score = 96.7 bits (239), Expect(3) = 2e-84
 Identities = 50/105 (47%), Positives = 71/105 (67%)
 Frame = -2

Query: 359  KKLVKKFGLEYGKIVRTPMSTTLNINKDEKGVSVDQHEYQSMIDGLLCLTASRLDILYNV 180
            K L+++F +E  K + TP+ +T  ++ DE G +VDQ EY+SMI  LL LTASR DI + V
Sbjct: 1160 KDLLRRFKMENCKPISTPIGSTAVLDPDEDGEAVDQKEYRSMIGSLLYLTASRPDIQFAV 1219

Query: 179  RECARYQVDPKESHKKAVKRILRYILSTTEHGLFYSEDITTHLVG 45
              CAR+Q  P+ SH++AVKRI+RY+  T E G++YS   +  L G
Sbjct: 1220 CLCARFQASPRASHRQAVKRIMRYLNHTLEFGIWYSTSSSICLSG 1264



 Score =  116 bits (291), Expect(3) = 8e-53
 Identities = 63/168 (37%), Positives = 99/168 (58%), Gaps = 13/168 (7%)
 Frame = -3

Query: 1894 IQTEKNTTLKRLSSDHGKEFDTS-------------QFLASKTPQQNGVVERKNITVQDM 1754
            ++ E   +LKR+ SD+G EF  +             +F + + PQQN VVERKN  + +M
Sbjct: 676  LELEFPGSLKRIRSDNGGEFKNASFEQFCNERGLEHEFSSPRVPQQNSVVERKNRVLVEM 735

Query: 1753 IHVMLNSKELSHSWWAEVPNTSIRITNRVFFRPMMNKTTYEIWKGKKPKLSYPYMFGSKC 1574
               ML+  + +  +WAE  NT+  I+NRVF R  + KT+YE+  G +PK+S+  +FG KC
Sbjct: 736  ARTMLDEYKTTRKFWAEAINTACYISNRVFLRSKLGKTSYELRFGHQPKVSHLRVFGCKC 795

Query: 1573 YILNDREHLGKFDARSDEEIFLGYSSSSHAYRVFNRRTRIVIETINLT 1430
            ++L    +L KF+ARS + +FLGY + +  YRV    T  ++ET  ++
Sbjct: 796  FVLKS-GNLDKFEARSTDGLFLGYPAHTRGYRVLILGTNKIVETCEVS 842



 Score =  113 bits (283), Expect(3) = 8e-53
 Identities = 70/225 (31%), Positives = 112/225 (49%), Gaps = 10/225 (4%)
 Frame = -1

Query: 2541 DSVIFGDSVKNRVVGVGTVNVAGMLKLSNVLHIEGMKANLISISQLCDDNDFSVYFDKR- 2365
            +S++F D+  + VV  G V V    +L NV  ++ +K NL+S+SQ+ D+N F V+F K  
Sbjct: 456  ESIVFADASTSAVVATGLVKVNEKFELKNVALVKDLKYNLLSVSQIVDEN-FEVHFKKTG 514

Query: 2364 ----QRCANK**QV-HHSRIKKS*----QLLPDECYEGTYMSDWAKWRSRTVV**LGHVN 2212
                  C +    +  + R+ K+       L   C    +  D   W  R     LGHV 
Sbjct: 515  SKVFDSCGDSVLNISRYERVFKADFENSVSLVITCLVAKFDKDVMFWHRR-----LGHVG 569

Query: 2211 YKHLHKLGSKQIVKEIPQFKKERKLLCEDCQIGKPIRAKHIQVGDITKINILDLMHIDLF 2032
            + HL +L    +V+ + + KK+  L+C  C+  K +   H  +  +       L+H+D  
Sbjct: 570  FDHLTRLSGLDLVRGLSKLKKDLDLICTPCRHAKMVSTSHAPIVSVMTDAPGQLLHMDTV 629

Query: 2031 GPTQVESTGGKMYALVCVDDYLTYTWIDFLGNKVDLFLAFRKICL 1897
            GP +V+S GGK Y LV VDD+  Y+W+ F+  K + F  FR + L
Sbjct: 630  GPARVQSVGGKWYVLVIVDDFSRYSWVFFMTTKDEAFQHFRGLFL 674



 Score = 28.1 bits (61), Expect(3) = 8e-53
 Identities = 18/51 (35%), Positives = 30/51 (58%)
 Frame = -3

Query: 2719 VLTKGEVKMAMDLDQNELRCNVAHLSLSANFGDV*YLDSGCLRHMTRNKEY 2567
            V + G+  + M LDQ+++   V  ++L A   +V  +DSG  RHMT +K +
Sbjct: 397  VFSDGKKNLNMILDQSKVL--VLEVALVARKENVWIVDSGDSRHMTGDKNW 445


>gb|ABA93940.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1508

 Score =  140 bits (352), Expect(3) = 8e-82
 Identities = 66/108 (61%), Positives = 82/108 (75%)
 Frame = -2

Query: 1055 EELQQFERNNVWELVTRPEGVNVIGTEWIFRNKTDEEGSIISNKVRLVTQGYTQVEGLDF 876
            EEL+ FERN VW LV  P G N+IGT+WIF+NK +E+G I+ NK RLV QG+TQVEGLDF
Sbjct: 1017 EELENFERNKVWTLVEPPSGHNIIGTKWIFKNKQNEDGLIVRNKARLVAQGFTQVEGLDF 1076

Query: 875  DEAFAPVTRLESVRLLVYIACAKNFTLQ*MDVKSAFLNRILQKEAYVE 732
            DE FAPV R+E++RLL+  A +K F L  MDV S FLN  +Q+E YV+
Sbjct: 1077 DETFAPVARIEAIRLLLAFAASKGFKLYQMDVNSDFLNGFIQEEVYVK 1124



 Score =  123 bits (308), Expect(3) = 8e-82
 Identities = 56/128 (43%), Positives = 83/128 (64%)
 Frame = -1

Query: 735  RTPKGFVNPKYPDHVYKLKRALYRLKQAPKA*YKRFTNYLLNKRYIRGSANKNMFIKHSA 556
            + P GF NP +P+HV+KL +ALY LKQAP+A Y R  N+LL K +  G  +K +F+    
Sbjct: 1124 KQPPGFENPDFPNHVFKLSKALYGLKQAPRAWYDRLKNFLLAKGFTMGKVDKTLFVFKHG 1183

Query: 555  QHVLIAHIYFNDIVFGSTSKELTEEFITSIRTEFEMSMVGELTFFISLQVRQIKEDKFLS 376
             + L   IY +DI+FG ++  L   F  +IR EFEMSM+G+L++F+ LQ++Q  +  F+ 
Sbjct: 1184 DNQLFVQIYVDDIIFGCSTHSLVVNFAETIRREFEMSMMGDLSYFLGLQIKQTPQGTFVH 1243

Query: 375  QAKYAKKI 352
            Q KY K +
Sbjct: 1244 QTKYTKDL 1251



 Score = 92.4 bits (228), Expect(3) = 8e-82
 Identities = 48/105 (45%), Positives = 69/105 (65%)
 Frame = -2

Query: 359  KKLVKKFGLEYGKIVRTPMSTTLNINKDEKGVSVDQHEYQSMIDGLLCLTASRLDILYNV 180
            K L+++F +E  K + TP+ +T  ++ DE   +VDQ EY+SMI  LL LT SR DI + V
Sbjct: 1249 KDLLRRFKMENCKPISTPIGSTAVLDPDEDSEAVDQKEYRSMIGSLLYLTVSRPDIQFVV 1308

Query: 179  RECARYQVDPKESHKKAVKRILRYILSTTEHGLFYSEDITTHLVG 45
              CAR+Q  P+ SH++AVKRI+RY+  T E G++YS   +  L G
Sbjct: 1309 CLCARFQASPRASHRQAVKRIMRYLNHTLEFGIWYSTSSSICLSG 1353



 Score =  114 bits (285), Expect(2) = 7e-41
 Identities = 61/161 (37%), Positives = 95/161 (59%), Gaps = 13/161 (8%)
 Frame = -3

Query: 1873 TLKRLSSDHGKEFDTS-------------QFLASKTPQQNGVVERKNITVQDMIHVMLNS 1733
            +LKR+ SD+  EF  +             +F + + PQQNGVVERKN  + +M   ML+ 
Sbjct: 692  SLKRIRSDNSGEFKNASFEQFCNERGLEHEFSSPRVPQQNGVVERKNRVLVEMARTMLDE 751

Query: 1732 KELSHSWWAEVPNTSIRITNRVFFRPMMNKTTYEIWKGKKPKLSYPYMFGSKCYILNDRE 1553
             +    +WAE  NT+  I+NRVF R  + KT+YE+  G +PK+S+  +FG KC++L    
Sbjct: 752  YKTPRKFWAEAINTACYISNRVFLRSKLGKTSYELRFGHQPKVSHLRVFGCKCFVLKS-G 810

Query: 1552 HLGKFDARSDEEIFLGYSSSSHAYRVFNRRTRIVIETINLT 1430
            +L KF+ARS + +FLGY + +  YR+    T  ++ET  ++
Sbjct: 811  NLDKFEARSTDGLFLGYPAHTRGYRLLILGTNKIVETCKVS 851



 Score = 83.2 bits (204), Expect(2) = 7e-41
 Identities = 41/131 (31%), Positives = 65/131 (49%)
 Frame = -1

Query: 2289 CYEGTYMSDWAKWRSRTVV**LGHVNYKHLHKLGSKQIVKEIPQFKKERKLLCEDCQIGK 2110
            C    +  D   W  R     LGHV + HL +L    +V+ +P+ KK+  L+C  C+  K
Sbjct: 558  CLVAKFDKDVMFWHRR-----LGHVGFDHLSRLSGLDLVRGLPKLKKDHDLVCTSCRHAK 612

Query: 2109 PIRAKHIQVGDITKINILDLMHIDLFGPTQVESTGGKMYALVCVDDYLTYTWIDFLGNKV 1930
             +   H  +  +       L+H+D  GP +++S  GK Y LV VDD+  Y+W+ F+  K 
Sbjct: 613  IVSTSHAPIVSVMTDAPGQLLHMDTVGPARMQSVVGKWYVLVIVDDFSRYSWVFFMATKD 672

Query: 1929 DLFLAFRKICL 1897
            +    FR + L
Sbjct: 673  EALQHFRGLFL 683


>gb|AAO73523.1| gag-pol polyprotein [Glycine max]
          Length = 1576

 Score =  175 bits (444), Expect(3) = 1e-81
 Identities = 114/302 (37%), Positives = 160/302 (52%), Gaps = 20/302 (6%)
 Frame = -3

Query: 1894 IQTEKNTTLKRLSSDHGKEFDTSQFL-------------ASKTPQQNGVVERKNITVQDM 1754
            +Q EK+  +KR+ SDHG+EF+ S+F              A+ TPQQNG+VERKN T+Q+ 
Sbjct: 807  LQREKDCVIKRIRSDHGREFENSRFTEFCTSEGITHEFSAAITPQQNGIVERKNRTLQEA 866

Query: 1753 IHVMLNSKELSHSWWAEVPNTSIRITNRVFFRPMMNKTTYEIWKGKKPKLSYPYMFGSKC 1574
              VML++KEL ++ WAE  NT+  I NRV  R     T YEIWKG+KP + + ++FGS C
Sbjct: 867  ARVMLHAKELPYNLWAEAMNTACYIHNRVTLRRGTPTTLYEIWKGRKPSVKHFHIFGSPC 926

Query: 1573 YILNDREHLGKFDARSDEEIFLGYSSSSHAYRVFNRRTRIVIETINLTIRGY*HQ*TKC* 1394
            YIL DRE   K D +SD  IFLGYS++S AYRVFN RTR V+E+IN+ +        K  
Sbjct: 927  YILADREQRRKMDPKSDAGIFLGYSTNSRAYRVFNSRTRTVMESINVVVDDLSPARKKD- 985

Query: 1393 *SCC**GRQHTXXXXXXXXXXXXXXXL*LISQWECDSHSGQCDSKKKKHKTSEGSHTDTI 1214
                    +                     S    D  +     K+   +  +    + I
Sbjct: 986  ------VEEDVRTSGDNVADAAKSGENAENSDSATDESNINQPDKRSSTRIQKMHPKELI 1039

Query: 1213 IEDITKGIRTRSKK*IDYNKMAVIINMTNNTSTLEPKNVKEALSAEY*I-------EQFK 1055
            I D  +G+ TRS++         I++ +   S +EPKNVKEAL+ E+ I       EQFK
Sbjct: 1040 IGDPNRGVTTRSRE-------VEIVSNSCFVSKIEPKNVKEALTDEFWINAMQEELEQFK 1092

Query: 1054 KS 1049
            ++
Sbjct: 1093 RN 1094



 Score =  142 bits (357), Expect(3) = 1e-81
 Identities = 86/240 (35%), Positives = 127/240 (52%), Gaps = 10/240 (4%)
 Frame = -1

Query: 2568 IL*IIQCHKDSVIFGDSVKNRVVGVGTVNVAGMLKLSNVLHIEGMKANLISISQLCDDND 2389
            +L I  C    V FGD  K +++G+G +   G+  L+ VL ++G+ ANLISISQLCD+  
Sbjct: 579  LLNIEPCSTSYVTFGDGSKGKIIGMGKLVHDGLPSLNKVLLVKGLTANLISISQLCDEG- 637

Query: 2388 FSVYFDKRQRCANK**QVHHSRIKKS*QLLPDECY-----EGTYMSDWAKWRSRTVV**L 2224
            F+V F K +           S +        D CY     E +Y S     +   V   +
Sbjct: 638  FNVNFTKSECLVTN----EKSEVLMKGSRSKDNCYLWTPQETSYSSTCLSSKEDEVR--I 691

Query: 2223 GHVNYKHLHKLGSKQI-----VKEIPQFKKERKLLCEDCQIGKPIRAKHIQVGDITKINI 2059
             H  + HLH  G K+I     V+ IP  K E   +C +CQIGK ++  H ++   T   +
Sbjct: 692  WHQRFGHLHLRGMKKILDKSAVRGIPNLKIEEGRICGECQIGKQVKMSHQKLQHQTTSRV 751

Query: 2058 LDLMHIDLFGPTQVESTGGKMYALVCVDDYLTYTWIDFLGNKVDLFLAFRKICLAFRQRR 1879
            L+L+H+DL GP QVES GGK YA V VDD+  +TW++F+  K   F  F+K+ L  ++ +
Sbjct: 752  LELLHMDLMGPMQVESLGGKRYAYVVVDDFSRFTWVNFIREKSGTFEVFKKLSLRLQREK 811



 Score = 37.4 bits (85), Expect(3) = 1e-81
 Identities = 18/33 (54%), Positives = 23/33 (69%)
 Frame = -3

Query: 2656 VAHLSLSANFGDV*YLDSGCLRHMTRNKEYLVD 2558
            V H SL A+  +  YLDSGC RHMT  KE+L++
Sbjct: 549  VVHTSLRASAKEDWYLDSGCSRHMTGVKEFLLN 581



 Score =  161 bits (408), Expect(2) = 1e-74
 Identities = 78/113 (69%), Positives = 90/113 (79%)
 Frame = -2

Query: 1061 IQEELQQFERNNVWELVTRPEGVNVIGTEWIFRNKTDEEGSIISNKVRLVTQGYTQVEGL 882
            +QEEL+QF+RN VWELV RPEG NVIGT+WIF+NKT+EEG I  NK RLV QGYTQ+EG+
Sbjct: 1084 MQEELEQFKRNEVWELVPRPEGTNVIGTKWIFKNKTNEEGVITRNKARLVAQGYTQIEGV 1143

Query: 881  DFDEAFAPVTRLESVRLLVYIACAKNFTLQ*MDVKSAFLNRILQKEAYVEHQK 723
            DFDE FAPV RLES+RLL+ +AC   F L  MDVKSAFLN  L +E YVE  K
Sbjct: 1144 DFDETFAPVARLESIRLLLGVACILKFKLYQMDVKSAFLNGYLNEEVYVEQPK 1196



 Score =  148 bits (374), Expect(2) = 1e-74
 Identities = 66/126 (52%), Positives = 97/126 (76%)
 Frame = -1

Query: 729  PKGFVNPKYPDHVYKLKRALYRLKQAPKA*YKRFTNYLLNKRYIRGSANKNMFIKHSAQH 550
            PKGF +P +PDHVY+LK+ALY LKQAP+A Y+R T +L  + Y +G  +K +F+K  A++
Sbjct: 1195 PKGFADPTHPDHVYRLKKALYGLKQAPRAWYERLTEFLTQQGYRKGGIDKTLFVKQDAEN 1254

Query: 549  VLIAHIYFNDIVFGSTSKELTEEFITSIRTEFEMSMVGELTFFISLQVRQIKEDKFLSQA 370
            ++IA IY +DIVFG  S E+   F+  +++EFEMS+VGELT+F+ LQV+Q+++  FLSQ+
Sbjct: 1255 LMIAQIYVDDIVFGGMSNEMLRHFVQQMQSEFEMSLVGELTYFLGLQVKQMEDSIFLSQS 1314

Query: 369  KYAKKI 352
            +YAK I
Sbjct: 1315 RYAKNI 1320



 Score =  108 bits (271), Expect(2) = 3e-22
 Identities = 57/113 (50%), Positives = 72/113 (63%)
 Frame = -2

Query: 383  FFLKQNMQKKLVKKFGLEYGKIVRTPMSTTLNINKDEKGVSVDQHEYQSMIDGLLCLTAS 204
            F  +    K +VKKFG+E     RTP  T L ++KDE G SVDQ  Y+SMI  LL LTAS
Sbjct: 1310 FLSQSRYAKNIVKKFGMENASHKRTPAPTHLKLSKDEAGTSVDQKPYRSMIGSLLYLTAS 1369

Query: 203  RLDILYNVRECARYQVDPKESHKKAVKRILRYILSTTEHGLFYSEDITTHLVG 45
            R DI Y V  CARYQ +PK SH   VKRIL+Y+  T+++G+ Y    ++ LVG
Sbjct: 1370 RPDITYAVGVCARYQANPKISHLNQVKRILKYVNGTSDYGIMYCHCSSSMLVG 1422



 Score = 26.2 bits (56), Expect(2) = 3e-22
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -1

Query: 45   YSDADWAVNCNDRKS 1
            Y DADWA + +DRKS
Sbjct: 1423 YCDADWAGSADDRKS 1437


>gb|AAO73527.1| gag-pol polyprotein [Glycine max]
          Length = 1576

 Score =  175 bits (444), Expect(3) = 2e-81
 Identities = 114/302 (37%), Positives = 160/302 (52%), Gaps = 20/302 (6%)
 Frame = -3

Query: 1894 IQTEKNTTLKRLSSDHGKEFDTSQFL-------------ASKTPQQNGVVERKNITVQDM 1754
            +Q EK+  +KR+ SDHG+EF+ S+F              A+ TPQQNG+VERKN T+Q+ 
Sbjct: 807  LQREKDCVIKRIRSDHGREFENSRFTEFCTSEGITHEFSAAITPQQNGIVERKNRTLQEA 866

Query: 1753 IHVMLNSKELSHSWWAEVPNTSIRITNRVFFRPMMNKTTYEIWKGKKPKLSYPYMFGSKC 1574
              VML++KEL ++ WAE  NT+  I NRV  R     T YEIWKG+KP + + ++FGS C
Sbjct: 867  ARVMLHAKELPYNLWAEAMNTACYIHNRVTLRRGTPTTLYEIWKGRKPSVKHFHIFGSPC 926

Query: 1573 YILNDREHLGKFDARSDEEIFLGYSSSSHAYRVFNRRTRIVIETINLTIRGY*HQ*TKC* 1394
            YIL DRE   K D +SD  IFLGYS++S AYRVFN RTR V+E+IN+ +        K  
Sbjct: 927  YILADREQRRKMDPKSDAGIFLGYSTNSRAYRVFNSRTRTVMESINVVVDDLSPARKKD- 985

Query: 1393 *SCC**GRQHTXXXXXXXXXXXXXXXL*LISQWECDSHSGQCDSKKKKHKTSEGSHTDTI 1214
                    +                     S    D  +     K+   +  +    + I
Sbjct: 986  ------VEEDVRTLGDNVADAAKSGENAENSDSATDESNINQPDKRSSTRIQKMHPKELI 1039

Query: 1213 IEDITKGIRTRSKK*IDYNKMAVIINMTNNTSTLEPKNVKEALSAEY*I-------EQFK 1055
            I D  +G+ TRS++         I++ +   S +EPKNVKEAL+ E+ I       EQFK
Sbjct: 1040 IGDPNRGVTTRSRE-------VEIVSNSCFVSKIEPKNVKEALTDEFWINAMQEELEQFK 1092

Query: 1054 KS 1049
            ++
Sbjct: 1093 RN 1094



 Score =  141 bits (356), Expect(3) = 2e-81
 Identities = 85/240 (35%), Positives = 128/240 (53%), Gaps = 10/240 (4%)
 Frame = -1

Query: 2568 IL*IIQCHKDSVIFGDSVKNRVVGVGTVNVAGMLKLSNVLHIEGMKANLISISQLCDDND 2389
            +L I  C    V FGD  K +++G+G +   G+  L+ VL ++G+ ANLISISQLCD+  
Sbjct: 579  LLNIEPCSTSYVTFGDGSKGKIIGMGKLVHDGLPSLNKVLLVKGLTANLISISQLCDEG- 637

Query: 2388 FSVYFDKRQRCANK**QVHHSRIKKS*QLLPDECY-----EGTYMSDWAKWRSRTVV**L 2224
            F+V F K +           S +        D CY     E +Y S     +   V   +
Sbjct: 638  FNVNFTKSECLVTN----EKSEVLMKGSRSKDNCYLWTPQETSYSSTCLSSKEDEVR--I 691

Query: 2223 GHVNYKHLHKLGSKQI-----VKEIPQFKKERKLLCEDCQIGKPIRAKHIQVGDITKINI 2059
             H  + HLH  G K+I     V+ IP  K E   +C +CQIGK ++  H ++   T   +
Sbjct: 692  WHQRFGHLHLRGMKKIIDKGAVRGIPNLKIEEGRICGECQIGKQVKMSHQKLRHQTTSRV 751

Query: 2058 LDLMHIDLFGPTQVESTGGKMYALVCVDDYLTYTWIDFLGNKVDLFLAFRKICLAFRQRR 1879
            L+L+H+DL GP QVES GGK YA V VDD+  +TW++F+  K + F  F+++ L  ++ +
Sbjct: 752  LELLHMDLMGPMQVESLGGKRYAYVVVDDFSRFTWVNFIREKSETFEVFKELSLRLQREK 811



 Score = 37.4 bits (85), Expect(3) = 2e-81
 Identities = 18/33 (54%), Positives = 23/33 (69%)
 Frame = -3

Query: 2656 VAHLSLSANFGDV*YLDSGCLRHMTRNKEYLVD 2558
            V H SL A+  +  YLDSGC RHMT  KE+L++
Sbjct: 549  VVHTSLRASAKEDWYLDSGCSRHMTGVKEFLLN 581



 Score =  161 bits (408), Expect(2) = 1e-74
 Identities = 78/113 (69%), Positives = 90/113 (79%)
 Frame = -2

Query: 1061 IQEELQQFERNNVWELVTRPEGVNVIGTEWIFRNKTDEEGSIISNKVRLVTQGYTQVEGL 882
            +QEEL+QF+RN VWELV RPEG NVIGT+WIF+NKT+EEG I  NK RLV QGYTQ+EG+
Sbjct: 1084 MQEELEQFKRNEVWELVPRPEGTNVIGTKWIFKNKTNEEGVITRNKARLVAQGYTQIEGV 1143

Query: 881  DFDEAFAPVTRLESVRLLVYIACAKNFTLQ*MDVKSAFLNRILQKEAYVEHQK 723
            DFDE FAPV RLES+RLL+ +AC   F L  MDVKSAFLN  L +E YVE  K
Sbjct: 1144 DFDETFAPVARLESIRLLLGVACILKFKLYQMDVKSAFLNGYLNEEVYVEQPK 1196



 Score =  148 bits (374), Expect(2) = 1e-74
 Identities = 66/126 (52%), Positives = 97/126 (76%)
 Frame = -1

Query: 729  PKGFVNPKYPDHVYKLKRALYRLKQAPKA*YKRFTNYLLNKRYIRGSANKNMFIKHSAQH 550
            PKGF +P +PDHVY+LK+ALY LKQAP+A Y+R T +L  + Y +G  +K +F+K  A++
Sbjct: 1195 PKGFADPTHPDHVYRLKKALYGLKQAPRAWYERLTEFLTQQGYRKGGIDKTLFVKQDAEN 1254

Query: 549  VLIAHIYFNDIVFGSTSKELTEEFITSIRTEFEMSMVGELTFFISLQVRQIKEDKFLSQA 370
            ++IA IY +DIVFG  S E+   F+  +++EFEMS+VGELT+F+ LQV+Q+++  FLSQ+
Sbjct: 1255 LMIAQIYVDDIVFGGMSNEMLRHFVQQMQSEFEMSLVGELTYFLGLQVKQMEDSIFLSQS 1314

Query: 369  KYAKKI 352
            +YAK I
Sbjct: 1315 RYAKNI 1320



 Score =  106 bits (265), Expect(2) = 1e-21
 Identities = 57/113 (50%), Positives = 70/113 (61%)
 Frame = -2

Query: 383  FFLKQNMQKKLVKKFGLEYGKIVRTPMSTTLNINKDEKGVSVDQHEYQSMIDGLLCLTAS 204
            F  +    K +VKKFG+E     RTP  T L ++KDE G SVDQ  Y+SMI  LL LTAS
Sbjct: 1310 FLSQSRYAKNIVKKFGMENASHKRTPAPTHLKLSKDEAGTSVDQSLYRSMIGSLLYLTAS 1369

Query: 203  RLDILYNVRECARYQVDPKESHKKAVKRILRYILSTTEHGLFYSEDITTHLVG 45
            R DI Y V  CARYQ +PK SH   VKRIL+Y+  T+++G+ Y       LVG
Sbjct: 1370 RPDITYAVGVCARYQANPKISHLTQVKRILKYVNGTSDYGIMYCHCSNPMLVG 1422



 Score = 26.2 bits (56), Expect(2) = 1e-21
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -1

Query: 45   YSDADWAVNCNDRKS 1
            Y DADWA + +DRKS
Sbjct: 1423 YCDADWAGSADDRKS 1437


>gb|AAO73521.1| gag-pol polyprotein [Glycine max]
          Length = 1574

 Score =  175 bits (444), Expect(3) = 2e-81
 Identities = 114/302 (37%), Positives = 160/302 (52%), Gaps = 20/302 (6%)
 Frame = -3

Query: 1894 IQTEKNTTLKRLSSDHGKEFDTS-------------QFLASKTPQQNGVVERKNITVQDM 1754
            +Q EK+  +KR+ SDHG+EF+ S             +F A+ TPQQNG+VERKN T+Q+ 
Sbjct: 805  LQREKDCVIKRIRSDHGREFENSRLTEFCTSEGITHEFSAAITPQQNGIVERKNRTLQEA 864

Query: 1753 IHVMLNSKELSHSWWAEVPNTSIRITNRVFFRPMMNKTTYEIWKGKKPKLSYPYMFGSKC 1574
              VML++KEL ++ WAE  NT+  I NRV  R     T YEIWKG+KP + + ++FGS C
Sbjct: 865  ARVMLHAKELPYNLWAEAMNTACYIHNRVTLRRGTPTTLYEIWKGRKPSVKHFHIFGSPC 924

Query: 1573 YILNDREHLGKFDARSDEEIFLGYSSSSHAYRVFNRRTRIVIETINLTIRGY*HQ*TKC* 1394
            YIL DRE   K D +SD  IFLGYS++S AYRVFN RTR V+E+IN+ +        K  
Sbjct: 925  YILADREQRRKMDPKSDAGIFLGYSTNSRAYRVFNSRTRTVMESINVVVDDLSPARKKD- 983

Query: 1393 *SCC**GRQHTXXXXXXXXXXXXXXXL*LISQWECDSHSGQCDSKKKKHKTSEGSHTDTI 1214
                    +                     S    D  +     K+   +  +    + I
Sbjct: 984  ------VEEDVRTSGDNVADAAKSGENAENSDSATDESNINQPDKRSSTRIQKMHPKELI 1037

Query: 1213 IEDITKGIRTRSKK*IDYNKMAVIINMTNNTSTLEPKNVKEALSAEY*I-------EQFK 1055
            I D  +G+ TRS++         I++ +   S +EPKNVKEAL+ E+ I       EQFK
Sbjct: 1038 IGDPNRGVTTRSRE-------VEIVSNSCFVSKIEPKNVKEALTDEFWINAMQEELEQFK 1090

Query: 1054 KS 1049
            ++
Sbjct: 1091 RN 1092



 Score =  140 bits (354), Expect(3) = 2e-81
 Identities = 85/240 (35%), Positives = 127/240 (52%), Gaps = 10/240 (4%)
 Frame = -1

Query: 2568 IL*IIQCHKDSVIFGDSVKNRVVGVGTVNVAGMLKLSNVLHIEGMKANLISISQLCDDND 2389
            +L I  C    V FGD  K +++G+G +   G+  L+ VL ++G+ ANLISISQLCD+  
Sbjct: 577  LLNIEPCSTSYVTFGDGSKGKIIGMGKLVHDGLPSLNKVLLVKGLTANLISISQLCDEG- 635

Query: 2388 FSVYFDKRQRCANK**QVHHSRIKKS*QLLPDECY-----EGTYMSDWAKWRSRTVV**L 2224
            F+V F K +           S +        D CY     E +Y S     +   V   +
Sbjct: 636  FNVNFTKSECLVTN----EKSEVLMKGSRSKDNCYLWTPQETSYSSTCLSSKEDEVR--I 689

Query: 2223 GHVNYKHLHKLGSKQI-----VKEIPQFKKERKLLCEDCQIGKPIRAKHIQVGDITKINI 2059
             H  + HLH  G K+I     V+ IP  K E   +C +CQIGK ++  H ++   T   +
Sbjct: 690  WHQRFGHLHLRGMKKIIDKGAVRGIPNLKIEEGRICGECQIGKQVKMSHQKLQHQTTSRV 749

Query: 2058 LDLMHIDLFGPTQVESTGGKMYALVCVDDYLTYTWIDFLGNKVDLFLAFRKICLAFRQRR 1879
            L+L+H+DL GP QVES GGK YA V VDD+  +TW+ F+  K + F  F+++ L  ++ +
Sbjct: 750  LELLHMDLMGPMQVESLGGKRYAYVVVDDFSRFTWVKFIREKSETFEVFKELSLRLQREK 809



 Score = 37.7 bits (86), Expect(3) = 2e-81
 Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
 Frame = -3

Query: 2731 LHTHVLTKGEV--KMAMDLDQNELRCNVAHLSLSANFGDV*YLDSGCLRHMTRNKEYLVD 2558
            LH H  T+     K  M + +++    V H SL A+  +  YLDSGC RHMT  KE+L++
Sbjct: 520  LHPHHGTQSSNSRKKMMWVPKHKAVSLVVHTSLRASAKEDWYLDSGCSRHMTGVKEFLLN 579



 Score =  161 bits (408), Expect(2) = 1e-74
 Identities = 78/113 (69%), Positives = 90/113 (79%)
 Frame = -2

Query: 1061 IQEELQQFERNNVWELVTRPEGVNVIGTEWIFRNKTDEEGSIISNKVRLVTQGYTQVEGL 882
            +QEEL+QF+RN VWELV RPEG NVIGT+WIF+NKT+EEG I  NK RLV QGYTQ+EG+
Sbjct: 1082 MQEELEQFKRNEVWELVPRPEGTNVIGTKWIFKNKTNEEGVITRNKARLVAQGYTQIEGV 1141

Query: 881  DFDEAFAPVTRLESVRLLVYIACAKNFTLQ*MDVKSAFLNRILQKEAYVEHQK 723
            DFDE FAPV RLES+RLL+ +AC   F L  MDVKSAFLN  L +E YVE  K
Sbjct: 1142 DFDETFAPVARLESIRLLLGVACILKFKLYQMDVKSAFLNGYLNEEVYVEQPK 1194



 Score =  148 bits (374), Expect(2) = 1e-74
 Identities = 66/126 (52%), Positives = 97/126 (76%)
 Frame = -1

Query: 729  PKGFVNPKYPDHVYKLKRALYRLKQAPKA*YKRFTNYLLNKRYIRGSANKNMFIKHSAQH 550
            PKGF +P +PDHVY+LK+ALY LKQAP+A Y+R T +L  + Y +G  +K +F+K  A++
Sbjct: 1193 PKGFADPTHPDHVYRLKKALYGLKQAPRAWYERLTEFLTQQGYRKGGIDKTLFVKQDAEN 1252

Query: 549  VLIAHIYFNDIVFGSTSKELTEEFITSIRTEFEMSMVGELTFFISLQVRQIKEDKFLSQA 370
            ++IA IY +DIVFG  S E+   F+  +++EFEMS+VGELT+F+ LQV+Q+++  FLSQ+
Sbjct: 1253 LMIAQIYVDDIVFGGMSNEMLRHFVQQMQSEFEMSLVGELTYFLGLQVKQMEDSIFLSQS 1312

Query: 369  KYAKKI 352
            +YAK I
Sbjct: 1313 RYAKNI 1318



 Score =  106 bits (265), Expect(2) = 1e-21
 Identities = 57/113 (50%), Positives = 70/113 (61%)
 Frame = -2

Query: 383  FFLKQNMQKKLVKKFGLEYGKIVRTPMSTTLNINKDEKGVSVDQHEYQSMIDGLLCLTAS 204
            F  +    K +VKKFG+E     RTP  T L ++KDE G SVDQ  Y+SMI  LL LTAS
Sbjct: 1308 FLSQSRYAKNIVKKFGMENASHKRTPAPTHLKLSKDEAGTSVDQSLYRSMIGSLLYLTAS 1367

Query: 203  RLDILYNVRECARYQVDPKESHKKAVKRILRYILSTTEHGLFYSEDITTHLVG 45
            R DI Y V  CARYQ +PK SH   VKRIL+Y+  T+++G+ Y       LVG
Sbjct: 1368 RPDITYAVGVCARYQANPKISHLTQVKRILKYVNGTSDYGIMYCHCSNPMLVG 1420



 Score = 26.2 bits (56), Expect(2) = 1e-21
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -1

Query: 45   YSDADWAVNCNDRKS 1
            Y DADWA + +DRKS
Sbjct: 1421 YCDADWAGSADDRKS 1435


>gb|AAL31657.1|AC079179_12 Putative Zea mays retrotransposon Opie-2 [Oryza sativa]
            gi|20042883|gb|AAM08711.1|AC116601_4 Putative Zea mays
            retrotransposon Opie-2 [Oryza sativa Japonica Group]
            gi|31429916|gb|AAP51900.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 494

 Score =  141 bits (356), Expect(3) = 5e-81
 Identities = 66/110 (60%), Positives = 85/110 (77%)
 Frame = -2

Query: 1061 IQEELQQFERNNVWELVTRPEGVNVIGTEWIFRNKTDEEGSIISNKVRLVTQGYTQVEGL 882
            + EEL+ FERN VW LV  P G N+IGT+W+F+NK +E+G I+ NK RLV QG+TQVEGL
Sbjct: 1    MHEELENFERNKVWTLVEPPSGHNIIGTKWVFKNKQNEDGLIVRNKARLVAQGFTQVEGL 60

Query: 881  DFDEAFAPVTRLESVRLLVYIACAKNFTLQ*MDVKSAFLNRILQKEAYVE 732
            DF+E FAPV R+E++RLL+  A +K F L  MDVKSAFLN  +Q+E YV+
Sbjct: 61   DFNETFAPVARIEAIRLLLAFAASKGFKLFQMDVKSAFLNGFIQEEVYVK 110



 Score =  123 bits (309), Expect(3) = 5e-81
 Identities = 57/128 (44%), Positives = 84/128 (65%)
 Frame = -1

Query: 735 RTPKGFVNPKYPDHVYKLKRALYRLKQAPKA*YKRFTNYLLNKRYIRGSANKNMFIKHSA 556
           + P GF NP +P+HV++L +ALY LKQAP+A Y RF N+LL K +  G  +K +F+    
Sbjct: 110 KQPPGFENPDFPNHVFELSKALYGLKQAPRAWYDRFKNFLLAKGFTMGKVDKMLFVLKHG 169

Query: 555 QHVLIAHIYFNDIVFGSTSKELTEEFITSIRTEFEMSMVGELTFFISLQVRQIKEDKFLS 376
            + L   IY +DI+F  +S  L  EF  ++R EFEMSM+GEL++F+ LQ++Q  +  F+ 
Sbjct: 170 DNQLFVQIYVDDIIFDCSSHALVVEFAETMRREFEMSMMGELSYFLGLQIKQTPQGTFVH 229

Query: 375 QAKYAKKI 352
           Q KY K +
Sbjct: 230 QTKYTKDL 237



 Score = 87.8 bits (216), Expect(3) = 5e-81
 Identities = 47/105 (44%), Positives = 68/105 (64%)
 Frame = -2

Query: 359 KKLVKKFGLEYGKIVRTPMSTTLNINKDEKGVSVDQHEYQSMIDGLLCLTASRLDILYNV 180
           K L++ F +E  K + TP+ +   ++ DE G +V+Q EY+SMI  LL LTA R DI + V
Sbjct: 235 KDLLRWFKMENCKPISTPIGSIAVLDPDEDGEAVNQKEYRSMIGSLLYLTAYRPDIQFVV 294

Query: 179 RECARYQVDPKESHKKAVKRILRYILSTTEHGLFYSEDITTHLVG 45
             CAR+Q  P+ SH++AVKRI+RY+  T E G++YS   +  L G
Sbjct: 295 CLCARFQASPRASHRQAVKRIMRYLNHTLEFGIWYSTSSSICLSG 339


>gb|ABA98847.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1417

 Score =  137 bits (346), Expect(3) = 1e-80
 Identities = 64/110 (58%), Positives = 83/110 (75%)
 Frame = -2

Query: 1061 IQEELQQFERNNVWELVTRPEGVNVIGTEWIFRNKTDEEGSIISNKVRLVTQGYTQVEGL 882
            + EEL+ FERN VW LV  P   N+IGT+W+F+N+ +E+G I+ NK RLV QG+TQVE L
Sbjct: 924  MHEELENFERNKVWTLVEPPSRHNIIGTKWVFKNRLNEDGLIVRNKTRLVAQGFTQVESL 983

Query: 881  DFDEAFAPVTRLESVRLLVYIACAKNFTLQ*MDVKSAFLNRILQKEAYVE 732
            DFDE FAPV R+E++RLL+  A +K F L  MDVKSAFLN  +Q+E YV+
Sbjct: 984  DFDETFAPVARIEAIRLLLAFAASKGFKLYQMDVKSAFLNGFIQEEVYVK 1033



 Score =  123 bits (309), Expect(3) = 1e-80
 Identities = 56/128 (43%), Positives = 84/128 (65%)
 Frame = -1

Query: 735  RTPKGFVNPKYPDHVYKLKRALYRLKQAPKA*YKRFTNYLLNKRYIRGSANKNMFIKHSA 556
            + P GF NP +P+HV+KL +ALY LKQAP+A Y R  N+LL K +  G  +K +F+    
Sbjct: 1033 KQPPGFENPDFPNHVFKLSKALYGLKQAPRAWYDRLKNFLLAKGFTMGKVDKTLFVLKHG 1092

Query: 555  QHVLIAHIYFNDIVFGSTSKELTEEFITSIRTEFEMSMVGELTFFISLQVRQIKEDKFLS 376
             + L   IY +DI+FG ++  L  +F  ++R EFEMSM+GEL++F+ LQ++Q  +  F+ 
Sbjct: 1093 DNQLFVQIYVDDIIFGCSTHALVVDFAETMRREFEMSMMGELSYFLRLQIKQTPQGTFVH 1152

Query: 375  QAKYAKKI 352
            Q KY K +
Sbjct: 1153 QTKYTKDL 1160



 Score = 90.1 bits (222), Expect(3) = 1e-80
 Identities = 48/105 (45%), Positives = 68/105 (64%)
 Frame = -2

Query: 359  KKLVKKFGLEYGKIVRTPMSTTLNINKDEKGVSVDQHEYQSMIDGLLCLTASRLDILYNV 180
            K L+++  +E  K + TP+ +T  ++ DE G  VDQ EY+SMI  LL LTASR DI + V
Sbjct: 1158 KDLLRRLKMENCKPISTPIGSTAVLDPDEDGEVVDQKEYRSMIGSLLYLTASRPDIQFAV 1217

Query: 179  RECARYQVDPKESHKKAVKRILRYILSTTEHGLFYSEDITTHLVG 45
              CAR+Q  P+ SH++AVKRI+RY+  T E  ++YS   +  L G
Sbjct: 1218 CLCARFQASPRTSHRQAVKRIMRYLNHTLEFRIWYSTSSSICLSG 1262



 Score =  114 bits (285), Expect(3) = 1e-49
 Identities = 71/221 (32%), Positives = 111/221 (50%), Gaps = 10/221 (4%)
 Frame = -1

Query: 2541 DSVIFGDSVKNRVVGVGTVNVAGMLKLSNVLHIEGMKANLISISQLCDDNDFSVYFDKRQ 2362
            +S+IFGD+  + V+  G V V    +L NV  +E +K NL+S+SQ+ D+N F V+F K +
Sbjct: 483  ESIIFGDAATSAVLATGLVKVNENFELKNVALVEDLKYNLLSVSQIVDEN-FEVHFKKTR 541

Query: 2361 R-----CANK**QV-HHSRIKKS*QLLPDE----CYEGTYMSDWAKWRSRTVV**LGHVN 2212
                  C +    +  + R+ K+    P      C    +  D   W  R     LGHV 
Sbjct: 542  SKVFDSCGDSVLNISRYGRVFKADFENPVSPVITCLVAKFDKDMMFWHRR-----LGHVG 596

Query: 2211 YKHLHKLGSKQIVKEIPQFKKERKLLCEDCQIGKPIRAKHIQVGDITKINILDLMHIDLF 2032
            + HL +L    +V+ + + KK+  L+C  C+  K     H  +  +       L+H+D  
Sbjct: 597  FDHLTRLSGLDLVRGLRKLKKDLDLVCTPCRHAKMDSTSHAPIVFVMTDAPGQLLHMDTV 656

Query: 2031 GPTQVESTGGKMYALVCVDDYLTYTWIDFLGNKVDLFLAFR 1909
            GP +V+S GGK Y LV VDD+  Y+W+ F+  K + F  FR
Sbjct: 657  GPARVQSVGGKWYVLVIVDDFSRYSWVFFMATKDEAFQHFR 697



 Score =  109 bits (273), Expect(3) = 1e-49
 Identities = 62/161 (38%), Positives = 94/161 (58%), Gaps = 13/161 (8%)
 Frame = -3

Query: 1873 TLKRLSSDHGKEFDTS-------------QFLASKTPQQNGVVERKNITVQDMIHVMLNS 1733
            +LKR+ SD+G EF  +             +F +   PQQNGVVERKN  + +M   ML+ 
Sbjct: 710  SLKRIRSDNGGEFKNALFEQFCNGRGLEHEFSSPHVPQQNGVVERKNRVLVEMARTMLDE 769

Query: 1732 KELSHSWWAEVPNTSIRITNRVFFRPMMNKTTYEIWKGKKPKLSYPYMFGSKCYILNDRE 1553
             +    + AE  NT+  I+NRVF R  + KT+YE+  G +PK+S+  +FG KC++L    
Sbjct: 770  YKTPRKFGAEAINTACYISNRVFMRSKLGKTSYELRFGHQPKVSHLCVFGCKCFVLKS-G 828

Query: 1552 HLGKFDARSDEEIFLGYSSSSHAYRVFNRRTRIVIETINLT 1430
            +L KF+ARS + +FLGY + +  YRV    T  ++ET  ++
Sbjct: 829  NLDKFEARSTDGLFLGYPAHTRDYRVLILGTIKIVETCEVS 869



 Score = 23.5 bits (49), Expect(3) = 1e-49
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 2644 SLSANFGDV*YLDSGCLRHMTRNKEY 2567
            +L A   +V  +D GC RHMT +K +
Sbjct: 447  ALVARKENVWIVDFGCSRHMTGDKNW 472


>gb|AAX96565.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77552672|gb|ABA95469.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 709

 Score =  137 bits (345), Expect(3) = 4e-80
 Identities = 64/110 (58%), Positives = 83/110 (75%)
 Frame = -2

Query: 1061 IQEELQQFERNNVWELVTRPEGVNVIGTEWIFRNKTDEEGSIISNKVRLVTQGYTQVEGL 882
            + EEL+ FERN VW LV    G N+IGT+W+F+NK +E+G I+ NK RLV QG+TQVEGL
Sbjct: 216  MHEELENFERNKVWTLVETKFGHNIIGTKWVFKNKQNEDGLIVRNKARLVAQGFTQVEGL 275

Query: 881  DFDEAFAPVTRLESVRLLVYIACAKNFTLQ*MDVKSAFLNRILQKEAYVE 732
            DFDE FAPV R+E++R L+  A +K F L  MDVKSAFLN  +Q+E Y++
Sbjct: 276  DFDETFAPVARIEAIRHLLAFAASKGFKLYQMDVKSAFLNGFIQEEVYIK 325



 Score =  120 bits (301), Expect(3) = 4e-80
 Identities = 55/128 (42%), Positives = 82/128 (64%)
 Frame = -1

Query: 735 RTPKGFVNPKYPDHVYKLKRALYRLKQAPKA*YKRFTNYLLNKRYIRGSANKNMFIKHSA 556
           + P GF NP +P+HV+KL +A Y LKQAP+A Y R  N+LL K +  G  +K +F+    
Sbjct: 325 KQPPGFENPDFPNHVFKLSKAFYGLKQAPRAWYDRLKNFLLAKGFTMGKFDKTLFVLKHG 384

Query: 555 QHVLIAHIYFNDIVFGSTSKELTEEFITSIRTEFEMSMVGELTFFISLQVRQIKEDKFLS 376
            + L   IY +DI+FG +   L  +F  ++R EFEMSM+GEL++F+ LQ++Q  +  F+ 
Sbjct: 385 DNQLFVQIYVDDIIFGCSIHALVVDFAETMRREFEMSMMGELSYFLGLQIKQTPQGTFVH 444

Query: 375 QAKYAKKI 352
           Q KY K +
Sbjct: 445 QTKYTKDL 452



 Score = 92.0 bits (227), Expect(3) = 4e-80
 Identities = 49/105 (46%), Positives = 70/105 (66%)
 Frame = -2

Query: 359 KKLVKKFGLEYGKIVRTPMSTTLNINKDEKGVSVDQHEYQSMIDGLLCLTASRLDILYNV 180
           K L+++F +E  K + TP+ +T  ++ DE G +VDQ EY+SMI  LL LTASR DI + V
Sbjct: 450 KDLLRRFKMENCKPISTPIGSTAVLDPDEDGKAVDQKEYRSMIGSLLYLTASRPDIQFAV 509

Query: 179 RECARYQVDPKESHKKAVKRILRYILSTTEHGLFYSEDITTHLVG 45
              AR+Q  P+ SH++AVKRI+RY+  T E G++YS   +  L G
Sbjct: 510 CLRARFQASPRASHRQAVKRIMRYLNHTLEFGIWYSTSSSICLSG 554


>gb|AAX96236.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77549895|gb|ABA92692.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 1500

 Score =  135 bits (339), Expect(3) = 1e-79
 Identities = 65/110 (59%), Positives = 81/110 (73%)
 Frame = -2

Query: 1061 IQEELQQFERNNVWELVTRPEGVNVIGTEWIFRNKTDEEGSIISNKVRLVTQGYTQVEGL 882
            + EEL+ FERN VW LV  P   N+IGT+W F+NK +E+G I+ NK RLV QG+TQVEGL
Sbjct: 1007 MHEELENFERNKVWTLVEPPSRRNIIGTKWGFKNKQNEDGLIVRNKARLVAQGFTQVEGL 1066

Query: 881  DFDEAFAPVTRLESVRLLVYIACAKNFTLQ*MDVKSAFLNRILQKEAYVE 732
            DFDE FAPV R+E++RLL   A +K F L  M VKSAFLN  +Q+E YV+
Sbjct: 1067 DFDETFAPVARIEAIRLLFAFAASKGFKLYQMGVKSAFLNGFIQEEVYVK 1116



 Score =  117 bits (294), Expect(3) = 1e-79
 Identities = 53/128 (41%), Positives = 82/128 (64%)
 Frame = -1

Query: 735  RTPKGFVNPKYPDHVYKLKRALYRLKQAPKA*YKRFTNYLLNKRYIRGSANKNMFIKHSA 556
            + P GF NP +P+HV+KL +ALY LKQAP+A Y R  N+LL K +  G  ++ +F+    
Sbjct: 1116 KQPPGFENPDFPNHVFKLSKALYGLKQAPRAWYDRLKNFLLAKGFTMGKVDRTLFVLKHG 1175

Query: 555  QHVLIAHIYFNDIVFGSTSKELTEEFITSIRTEFEMSMVGELTFFISLQVRQIKEDKFLS 376
             + L   IY +DI+FG ++  L  +F  ++R EF+MSM+GEL++F+ LQ++Q  +  F  
Sbjct: 1176 DNQLFVQIYVDDIIFGCSTLALVVDFAETMRREFDMSMMGELSYFLGLQIKQTPQGTFEH 1235

Query: 375  QAKYAKKI 352
            Q  Y K +
Sbjct: 1236 QTNYTKDL 1243



 Score = 95.5 bits (236), Expect(3) = 1e-79
 Identities = 48/108 (44%), Positives = 72/108 (66%)
 Frame = -2

Query: 368  NMQKKLVKKFGLEYGKIVRTPMSTTLNINKDEKGVSVDQHEYQSMIDGLLCLTASRLDIL 189
            N  K L+++F +E  K + TP+S+T  ++ DE G ++DQ EY++MI  LL LTASR DI 
Sbjct: 1238 NYTKDLLRRFKMENCKPISTPISSTAVLDPDEDGEAIDQKEYRTMIGSLLYLTASRPDIQ 1297

Query: 188  YNVRECARYQVDPKESHKKAVKRILRYILSTTEHGLFYSEDITTHLVG 45
            + V  CAR+Q  P+ SH++A+KRI+ Y+  T E G++YS   +  L G
Sbjct: 1298 FAVCLCARFQASPRASHRQAIKRIMSYLNHTLEFGIWYSTSSSICLSG 1345



 Score = 66.2 bits (160), Expect = 9e-08
 Identities = 32/80 (40%), Positives = 51/80 (63%)
 Frame = -3

Query: 1669 VFFRPMMNKTTYEIWKGKKPKLSYPYMFGSKCYILNDREHLGKFDARSDEEIFLGYSSSS 1490
            VF R  + KT+YE+  G +P +S+  +FG KC++L    +L KF+ARS + +FLGY + +
Sbjct: 777  VFLRSKLGKTSYELRFGHQPNVSHLRVFGCKCFVLKSG-NLDKFEARSTDGLFLGYLAHT 835

Query: 1489 HAYRVFNRRTRIVIETINLT 1430
            H YRV    T  ++ET  ++
Sbjct: 836  HGYRVLILGTNKIVETCEVS 855


>gb|AAO73525.1| gag-pol polyprotein [Glycine max]
          Length = 1576

 Score =  168 bits (425), Expect(3) = 2e-79
 Identities = 86/169 (50%), Positives = 114/169 (67%), Gaps = 13/169 (7%)
 Frame = -3

Query: 1894 IQTEKNTTLKRLSSDHGKEFDTSQFL-------------ASKTPQQNGVVERKNITVQDM 1754
            +Q EK+  +KR+ SDHG+EF+ S+F              A+ TPQQNG+VERKN T+Q+ 
Sbjct: 807  LQREKDCVIKRIRSDHGREFENSKFTEFCTSEGITHEFSAAITPQQNGIVERKNRTLQEA 866

Query: 1753 IHVMLNSKELSHSWWAEVPNTSIRITNRVFFRPMMNKTTYEIWKGKKPKLSYPYMFGSKC 1574
              VML++KEL ++ WAE  NT+  I NRV  R     T YEIWKG+KP + + ++FGS C
Sbjct: 867  TRVMLHAKELPYNLWAEAMNTACYIHNRVTLRRGTPTTLYEIWKGRKPTVKHFHIFGSPC 926

Query: 1573 YILNDREHLGKFDARSDEEIFLGYSSSSHAYRVFNRRTRIVIETINLTI 1427
            YIL DRE   K D +SD  IFLGYS++S AYRVFN RTR V+E+IN+ +
Sbjct: 927  YILADREQRRKMDPKSDAGIFLGYSTNSRAYRVFNSRTRTVMESINVVV 975



 Score =  140 bits (354), Expect(3) = 2e-79
 Identities = 84/234 (35%), Positives = 124/234 (52%), Gaps = 10/234 (4%)
 Frame = -1

Query: 2550 CHKDSVIFGDSVKNRVVGVGTVNVAGMLKLSNVLHIEGMKANLISISQLCDDNDFSVYFD 2371
            C    V FGD  K ++ G+G +   G+  L+ VL ++G+ ANLISISQLCD+  F+V F 
Sbjct: 585  CSTSYVTFGDGSKGKITGMGKLVHDGLPSLNKVLLVKGLTANLISISQLCDEG-FNVNFT 643

Query: 2370 KRQRCANK**QVHHSRIKKS*QLLPDECY-----EGTYMSDWAKWRSRTVV**LGHVNYK 2206
            K +           S +        D CY     E +Y S     +   V   + H  + 
Sbjct: 644  KSECLVTN----EKSEVLMKGSRSKDNCYLWTPQETSYSSTCLSSKEDEVK--IWHQRFG 697

Query: 2205 HLHKLGSKQI-----VKEIPQFKKERKLLCEDCQIGKPIRAKHIQVGDITKINILDLMHI 2041
            HLH  G K+I     V+ IP  K E   +C +CQIGK ++  H ++   T   +L+L+H+
Sbjct: 698  HLHLRGMKKIIDKGAVRGIPNLKIEEGRICGECQIGKQVKMSHQKLQHQTTSMVLELLHM 757

Query: 2040 DLFGPTQVESTGGKMYALVCVDDYLTYTWIDFLGNKVDLFLAFRKICLAFRQRR 1879
            DL GP QVES GGK YA V VDD+  +TW++F+  K D F  F+++ L  ++ +
Sbjct: 758  DLMGPMQVESLGGKRYAYVVVDDFSRFTWVNFIREKSDTFEVFKELSLRLQREK 811



 Score = 38.5 bits (88), Expect(3) = 2e-79
 Identities = 19/33 (57%), Positives = 23/33 (69%)
 Frame = -3

Query: 2656 VAHLSLSANFGDV*YLDSGCLRHMTRNKEYLVD 2558
            V H SL A+  +  YLDSGC RHMT  KE+LV+
Sbjct: 549  VVHTSLRASAKEDWYLDSGCSRHMTGVKEFLVN 581



 Score =  163 bits (412), Expect = 5e-37
 Identities = 79/113 (69%), Positives = 91/113 (80%)
 Frame = -2

Query: 1061 IQEELQQFERNNVWELVTRPEGVNVIGTEWIFRNKTDEEGSIISNKVRLVTQGYTQVEGL 882
            +QEEL+QF+RN VWELV RPEG NVIGT+WIF+NKT+EEG I  NK RLV QGYTQ+EG+
Sbjct: 1084 MQEELEQFKRNEVWELVPRPEGTNVIGTKWIFKNKTNEEGVITRNKARLVAQGYTQIEGV 1143

Query: 881  DFDEAFAPVTRLESVRLLVYIACAKNFTLQ*MDVKSAFLNRILQKEAYVEHQK 723
            DFDE FAPV RLES+RLL+ +AC   F L  MDVKSAFLN  L +EAYVE  K
Sbjct: 1144 DFDETFAPVARLESIRLLLGVACILKFKLYQMDVKSAFLNGYLNEEAYVEQPK 1196



 Score =  145 bits (365), Expect = 1e-31
 Identities = 66/135 (48%), Positives = 99/135 (73%)
 Frame = -1

Query: 756  ITKRSICRTPKGFVNPKYPDHVYKLKRALYRLKQAPKA*YKRFTNYLLNKRYIRGSANKN 577
            + + +    PKGFV+P + DHVY+LK+ALY LKQAP+A Y+R T +L  + Y +G  +K 
Sbjct: 1186 LNEEAYVEQPKGFVDPTHLDHVYRLKKALYGLKQAPRAWYERLTEFLTQQGYRKGGIDKT 1245

Query: 576  MFIKHSAQHVLIAHIYFNDIVFGSTSKELTEEFITSIRTEFEMSMVGELTFFISLQVRQI 397
            +F+K  A++++IA IY +DIVFG  S E+   F+  +++EFEMS+VGEL +F+ LQV+Q+
Sbjct: 1246 LFVKQDAENLMIAQIYVDDIVFGGMSNEMLRHFVPQMQSEFEMSLVGELHYFLGLQVKQM 1305

Query: 396  KEDKFLSQAKYAKKI 352
            ++  FLSQ+KYAK I
Sbjct: 1306 EDSIFLSQSKYAKNI 1320



 Score =  107 bits (268), Expect(2) = 2e-21
 Identities = 58/128 (45%), Positives = 77/128 (60%)
 Frame = -2

Query: 428  HFLLACKSDK*RKINFFLKQNMQKKLVKKFGLEYGKIVRTPMSTTLNINKDEKGVSVDQH 249
            H+ L  +  +     F  +    K +VKKFG+E     RTP  T L ++KDE G SVDQ+
Sbjct: 1295 HYFLGLQVKQMEDSIFLSQSKYAKNIVKKFGMENASHKRTPAPTHLKLSKDEAGTSVDQN 1354

Query: 248  EYQSMIDGLLCLTASRLDILYNVRECARYQVDPKESHKKAVKRILRYILSTTEHGLFYSE 69
             Y+SMI  LL LTASR DI + V  CARYQ +PK SH   VKRIL+Y+  T+++G+ Y  
Sbjct: 1355 LYRSMIGSLLYLTASRPDITFAVGVCARYQANPKISHLNQVKRILKYVNGTSDYGIMYCH 1414

Query: 68   DITTHLVG 45
               + LVG
Sbjct: 1415 CSDSMLVG 1422



 Score = 24.6 bits (52), Expect(2) = 2e-21
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -1

Query: 45   YSDADWAVNCNDRK 4
            Y DADWA + +DRK
Sbjct: 1423 YCDADWAGSADDRK 1436


>gb|AAO73529.1| gag-pol polyprotein [Glycine max]
          Length = 1577

 Score =  168 bits (425), Expect(3) = 5e-79
 Identities = 86/169 (50%), Positives = 114/169 (67%), Gaps = 13/169 (7%)
 Frame = -3

Query: 1894 IQTEKNTTLKRLSSDHGKEFDTSQFL-------------ASKTPQQNGVVERKNITVQDM 1754
            +Q EK+  +KR+ SDHG+EF+ S+F              A+ TPQQNG+VERKN T+Q+ 
Sbjct: 808  LQREKDCVIKRIRSDHGREFENSKFTEFCTSEGITHEFSAAITPQQNGIVERKNRTLQEA 867

Query: 1753 IHVMLNSKELSHSWWAEVPNTSIRITNRVFFRPMMNKTTYEIWKGKKPKLSYPYMFGSKC 1574
              VML++KEL ++ WAE  NT+  I NRV  R     T YEIWKG+KP + + ++FGS C
Sbjct: 868  ARVMLHAKELPYNLWAEAMNTACYIHNRVTLRRGTPTTLYEIWKGRKPTVKHFHIFGSPC 927

Query: 1573 YILNDREHLGKFDARSDEEIFLGYSSSSHAYRVFNRRTRIVIETINLTI 1427
            YIL DRE   K D +SD  IFLGYS++S AYRVFN RTR V+E+IN+ +
Sbjct: 928  YILADREQRRKMDPKSDAGIFLGYSTNSRAYRVFNSRTRTVMESINVVV 976



 Score =  138 bits (347), Expect(3) = 5e-79
 Identities = 82/234 (35%), Positives = 123/234 (52%), Gaps = 10/234 (4%)
 Frame = -1

Query: 2550 CHKDSVIFGDSVKNRVVGVGTVNVAGMLKLSNVLHIEGMKANLISISQLCDDNDFSVYFD 2371
            C    V FGD  K ++ G+G +   G+  L+ VL ++G+  NLISISQLCD+  F+V F 
Sbjct: 586  CSTSYVTFGDGSKGKITGMGKLVHEGLPSLNKVLLVKGLTVNLISISQLCDEG-FNVNFT 644

Query: 2370 KRQRCANK**QVHHSRIKKS*QLLPDECY-----EGTYMSDWAKWRSRTVV**LGHVNYK 2206
            K +           S +        D CY     E ++ S     +   V   + H  + 
Sbjct: 645  KSECLVTN----EKSEVLMKGSRSKDNCYLWTPQESSHSSTCLFSKEDEVK--IWHQRFG 698

Query: 2205 HLHKLGSKQI-----VKEIPQFKKERKLLCEDCQIGKPIRAKHIQVGDITKINILDLMHI 2041
            HLH  G K+I     V+ IP  K E   +C +CQIGK ++  H ++   T   +L+L+H+
Sbjct: 699  HLHLRGMKKIIDKGAVRGIPNLKIEEGRICGECQIGKQVKMSHQKLQHQTTSRVLELLHM 758

Query: 2040 DLFGPTQVESTGGKMYALVCVDDYLTYTWIDFLGNKVDLFLAFRKICLAFRQRR 1879
            DL GP QVES GGK YA V VDD+  +TW++F+  K D F  F+++ L  ++ +
Sbjct: 759  DLMGPMQVESLGGKRYAYVVVDDFSRFTWVNFIREKSDTFEVFKELSLRLQREK 812



 Score = 40.0 bits (92), Expect(3) = 5e-79
 Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
 Frame = -3

Query: 2728 HTHVLTKGEV--KMAMDLDQNELRCNVAHLSLSANFGDV*YLDSGCLRHMTRNKEYLVD 2558
            H H  T+G    +  M + ++++   V H SL A+  +  YLDSGC RHMT  KE+LV+
Sbjct: 524  HPHHGTQGSSSGRKMMWVPKHKIVSLVVHTSLRASAKEDWYLDSGCSRHMTGVKEFLVN 582



 Score =  163 bits (412), Expect = 5e-37
 Identities = 79/113 (69%), Positives = 91/113 (80%)
 Frame = -2

Query: 1061 IQEELQQFERNNVWELVTRPEGVNVIGTEWIFRNKTDEEGSIISNKVRLVTQGYTQVEGL 882
            +QEEL+QF+RN VWELV RPEG NVIGT+WIF+NKT+EEG I  NK RLV QGYTQ+EG+
Sbjct: 1085 MQEELEQFKRNEVWELVPRPEGTNVIGTKWIFKNKTNEEGVITRNKARLVAQGYTQIEGV 1144

Query: 881  DFDEAFAPVTRLESVRLLVYIACAKNFTLQ*MDVKSAFLNRILQKEAYVEHQK 723
            DFDE FAPV RLES+RLL+ +AC   F L  MDVKSAFLN  L +EAYVE  K
Sbjct: 1145 DFDETFAPVARLESIRLLLGVACILKFKLYQMDVKSAFLNGYLNEEAYVEQPK 1197



 Score =  151 bits (382), Expect = 2e-33
 Identities = 68/135 (50%), Positives = 101/135 (74%)
 Frame = -1

Query: 756  ITKRSICRTPKGFVNPKYPDHVYKLKRALYRLKQAPKA*YKRFTNYLLNKRYIRGSANKN 577
            + + +    PKGFV+P +PDHVY+LK+ALY LKQAP+A Y+R T +L  + Y +G  +K 
Sbjct: 1187 LNEEAYVEQPKGFVDPTHPDHVYRLKKALYGLKQAPRAWYERLTEFLTQQGYRKGGIDKT 1246

Query: 576  MFIKHSAQHVLIAHIYFNDIVFGSTSKELTEEFITSIRTEFEMSMVGELTFFISLQVRQI 397
            +F+K  A++++IA IY +DIVFG  S E+   F+  +++EFEMS+VGELT+F+ LQV+Q+
Sbjct: 1247 LFVKQDAENLMIAQIYVDDIVFGGMSNEMLRHFVQQMQSEFEMSLVGELTYFLGLQVKQM 1306

Query: 396  KEDKFLSQAKYAKKI 352
            ++  FLSQ+KYAK I
Sbjct: 1307 EDSIFLSQSKYAKNI 1321



 Score =  107 bits (266), Expect(2) = 1e-21
 Identities = 57/113 (50%), Positives = 71/113 (62%)
 Frame = -2

Query: 383  FFLKQNMQKKLVKKFGLEYGKIVRTPMSTTLNINKDEKGVSVDQHEYQSMIDGLLCLTAS 204
            F  +    K +VKKFG+E     RTP  T L ++KDE G SVDQ  Y+SMI  LL LTAS
Sbjct: 1311 FLSQSKYAKNIVKKFGMENASHKRTPAPTHLKLSKDEAGTSVDQSLYRSMIGSLLYLTAS 1370

Query: 203  RLDILYNVRECARYQVDPKESHKKAVKRILRYILSTTEHGLFYSEDITTHLVG 45
            R DI Y V  CARYQ +PK SH   VKRIL+Y+  T+++G+ Y     + LVG
Sbjct: 1371 RPDITYAVGVCARYQANPKISHLNQVKRILKYVNGTSDYGIMYCHCSGSMLVG 1423



 Score = 26.2 bits (56), Expect(2) = 1e-21
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -1

Query: 45   YSDADWAVNCNDRKS 1
            Y DADWA + +DRKS
Sbjct: 1424 YCDADWAGSADDRKS 1438


>gb|AAM08523.1|AC068654_25 Putative retroelement [Oryza sativa Japonica Group]
            gi|31429833|gb|AAP51828.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1522

 Score =  134 bits (336), Expect(3) = 6e-79
 Identities = 63/110 (57%), Positives = 82/110 (74%)
 Frame = -2

Query: 1061 IQEELQQFERNNVWELVTRPEGVNVIGTEWIFRNKTDEEGSIISNKVRLVTQGYTQVEGL 882
            + EEL+ FERN VW +V  P G N+IGT+W+F+NK +E+G I+ NK  LV QG+TQVEGL
Sbjct: 1029 MHEELENFERNKVWTIVEPPSGHNIIGTKWVFKNKQNEDGLIVRNKAGLVAQGFTQVEGL 1088

Query: 881  DFDEAFAPVTRLESVRLLVYIACAKNFTLQ*MDVKSAFLNRILQKEAYVE 732
            DFDE FA V  +E++RLL+  A +K F L  MDVKSAFLN  +Q+E YV+
Sbjct: 1089 DFDETFANVAIIEAIRLLLAFATSKGFKLYQMDVKSAFLNGFIQEEVYVK 1138



 Score =  118 bits (296), Expect(3) = 6e-79
 Identities = 54/128 (42%), Positives = 81/128 (63%)
 Frame = -1

Query: 735  RTPKGFVNPKYPDHVYKLKRALYRLKQAPKA*YKRFTNYLLNKRYIRGSANKNMFIKHSA 556
            + P GF NP +P HV+KL +ALY LKQAP+A Y R  N+LL K +  G  +K +F+    
Sbjct: 1138 KQPPGFENPDFPKHVFKLSKALYGLKQAPRAWYDRLKNFLLTKGFTIGKVDKTLFVLKHG 1197

Query: 555  QHVLIAHIYFNDIVFGSTSKELTEEFITSIRTEFEMSMVGELTFFISLQVRQIKEDKFLS 376
             + L   IY +DI+FG ++  L  +F   +  EF+MSM+GEL++F+ LQ++Q  +  F+ 
Sbjct: 1198 DNQLFVQIYVDDIIFGCSTHALVVDFAEIMHREFKMSMMGELSYFLGLQIKQTPQGTFVH 1257

Query: 375  QAKYAKKI 352
            Q KY K +
Sbjct: 1258 QTKYTKDL 1265



 Score = 93.6 bits (231), Expect(3) = 6e-79
 Identities = 48/105 (45%), Positives = 70/105 (66%)
 Frame = -2

Query: 359  KKLVKKFGLEYGKIVRTPMSTTLNINKDEKGVSVDQHEYQSMIDGLLCLTASRLDILYNV 180
            K L+++F +E  K + TP+ +T+ ++ DE G +VDQ EY+SMI  LL LTASR  I + V
Sbjct: 1263 KDLLRRFKMENCKPISTPIGSTVVLDSDEDGEAVDQKEYRSMIGSLLYLTASRPGIQFAV 1322

Query: 179  RECARYQVDPKESHKKAVKRILRYILSTTEHGLFYSEDITTHLVG 45
              C R+Q  P+ SH++AVKRI+RY+  T E G++YS   +  L G
Sbjct: 1323 CLCVRFQASPRASHRQAVKRIMRYLNHTLEFGIWYSTSSSICLSG 1367



 Score =  114 bits (285), Expect(2) = 2e-25
 Identities = 70/225 (31%), Positives = 113/225 (50%), Gaps = 10/225 (4%)
 Frame = -1

Query: 2541 DSVIFGDSVKNRVVGVGTVNVAGMLKLSNVLHIEGMKANLISISQLCDDNDFSVYFDKR- 2365
            +S+IFGD+  + V+ +G V V    +L N+  +E +K NL+S+SQ+ D+N F V+F+K  
Sbjct: 573  ESIIFGDAATSAVLAIGLVKVNEKFELKNIALVEDLKYNLLSVSQIVDEN-FVVHFEKTG 631

Query: 2364 ----QRCANK**QV-HHSRIKKS*QLLP----DECYEGTYMSDWAKWRSRTVV**LGHVN 2212
                  C +    +  + R+ K+    P      C    +  D   W  R     LGHV 
Sbjct: 632  SKVFDSCGDSVLNISRYGRVFKADFENPVSPVKTCLVAKFDKDVMFWHRR-----LGHVG 686

Query: 2211 YKHLHKLGSKQIVKEIPQFKKERKLLCEDCQIGKPIRAKHIQVGDITKINILDLMHIDLF 2032
            + HL +L    +V  +P+ KK+  L+C  C+  K +   H  +  +       L+H+D  
Sbjct: 687  FHHLTRLSGLDLVHGLPKRKKDLDLVCTPCRHAKMVSTSHAPIVSVITDAPGQLLHMDTV 746

Query: 2031 GPTQVESTGGKMYALVCVDDYLTYTWIDFLGNKVDLFLAFRKICL 1897
            GP +V+S G K Y LV VDD+  Y+W+  +  K + F  FR + L
Sbjct: 747  GPARVQSVGEKWYVLVIVDDFSRYSWVFIMETKDEAFQHFRGLFL 791



 Score = 31.6 bits (70), Expect(2) = 2e-25
 Identities = 18/47 (38%), Positives = 29/47 (61%)
 Frame = -3

Query: 2707 GEVKMAMDLDQNELRCNVAHLSLSANFGDV*YLDSGCLRHMTRNKEY 2567
            G+  + M LDQ+++   V  ++L A   +V  +DSGC RHMT +K +
Sbjct: 518  GKKNLNMILDQSKVL--VLEVALVARKENVWIVDSGCSRHMTSDKNW 562


>gb|AAN40030.1| putative gag-pol polyprotein [Zea mays]
          Length = 2319

 Score =  136 bits (342), Expect(3) = 1e-78
 Identities = 69/110 (62%), Positives = 80/110 (72%)
 Frame = -2

Query: 1061 IQEELQQFERNNVWELVTRPEGVNVIGTEWIFRNKTDEEGSIISNKVRLVTQGYTQVEGL 882
            +QEEL  F RN VW LV RP+  NVIGT+W+FRNK DE G +  NK RLV QGYTQVEGL
Sbjct: 1330 MQEELNNFTRNEVWSLVQRPKQ-NVIGTKWVFRNKQDENGVVTKNKARLVAQGYTQVEGL 1388

Query: 881  DFDEAFAPVTRLESVRLLVYIACAKNFTLQ*MDVKSAFLNRILQKEAYVE 732
            DF E +APV RLES+R+L+  A   +F L  MDVKSAFLN  LQ+  YVE
Sbjct: 1389 DFGETYAPVARLESIRILIAYATNHDFKLYQMDVKSAFLNGPLQERVYVE 1438



 Score =  115 bits (289), Expect(3) = 1e-78
 Identities = 55/133 (41%), Positives = 82/133 (61%)
 Frame = -1

Query: 756  ITKRSICRTPKGFVNPKYPDHVYKLKRALYRLKQAPKA*YKRFTNYLLNKRYIRGSANKN 577
            + +R     P GF +PK P+HVY L +ALY LKQAP+A Y    ++L+   +  G A+  
Sbjct: 1431 LQERVYVEQPPGFEDPKKPNHVYLLHKALYGLKQAPRAWYDCLKDFLIKNGFTIGKADST 1490

Query: 576  MFIKHSAQHVLIAHIYFNDIVFGSTSKELTEEFITSIRTEFEMSMVGELTFFISLQVRQI 397
            +F +     + +  IY +DI+FGST+++  EEF   +   FEMSM+GEL +F+  QV+Q+
Sbjct: 1491 LFTRKVDNELFVCQIYVDDIIFGSTNEKFCEEFSKVMTNRFEMSMMGELKYFLGFQVKQL 1550

Query: 396  KEDKFLSQAKYAK 358
            KE  FL Q KY +
Sbjct: 1551 KEGTFLCQTKYTQ 1563



 Score = 92.8 bits (229), Expect(3) = 1e-78
 Identities = 49/113 (43%), Positives = 72/113 (63%)
 Frame = -2

Query: 383  FFLKQNMQKKLVKKFGLEYGKIVRTPMSTTLNINKDEKGVSVDQHEYQSMIDGLLCLTAS 204
            F  +    + ++KKFG+E  K  +TPM +  +++ +E+G  VDQ  Y+SMI  LL L AS
Sbjct: 1555 FLCQTKYTQDMLKKFGMEKAKHAKTPMPSNGHLDLNEEGKPVDQKLYRSMIGSLLYLCAS 1614

Query: 203  RLDILYNVRECARYQVDPKESHKKAVKRILRYILSTTEHGLFYSEDITTHLVG 45
            R DI+ +V  CAR+Q +PK+ H  AVKRILRY++ T   GL+Y +     L+G
Sbjct: 1615 RPDIMLSVCMCARFQANPKDCHLVAVKRILRYLVHTQNLGLWYPKGSFFDLLG 1667



 Score =  126 bits (317), Expect(3) = 1e-51
 Identities = 68/175 (38%), Positives = 97/175 (55%), Gaps = 13/175 (7%)
 Frame = -3

Query: 1915 IQKDMSSIQTEKNTTLKRLSSDHGKEFDTS-------------QFLASKTPQQNGVVERK 1775
            ++K M   Q E    +K++ SD+G EF  +             +F    TPQQNGVVERK
Sbjct: 975  LKKFMRRAQNEFELKIKKVRSDNGTEFKNTGVEEFLGEEGIKHEFSVPYTPQQNGVVERK 1034

Query: 1774 NITVQDMIHVMLNSKELSHSWWAEVPNTSIRITNRVFFRPMMNKTTYEIWKGKKPKLSYP 1595
            N T+ +    ML+  +   ++WAE  NT+    NR++   +  KT YE+  G KPK+ Y 
Sbjct: 1035 NRTLIEAARTMLDEYKTPDNFWAEAVNTACHAINRLYLHKIYKKTAYELLTGNKPKVDYF 1094

Query: 1594 YMFGSKCYILNDREHLGKFDARSDEEIFLGYSSSSHAYRVFNRRTRIVIETINLT 1430
             +FG KC+ILN +    KF  R DE   LGY+S++H YRVFN  T +V   I++T
Sbjct: 1095 RVFGCKCFILNKKVKSSKFAPRVDEGFLLGYASNAHGYRVFNNSTGLVEIAIDVT 1149



 Score =  102 bits (254), Expect(3) = 1e-51
 Identities = 67/215 (31%), Positives = 102/215 (47%), Gaps = 14/215 (6%)
 Frame = -1

Query: 2535 VIFGDSVKNRVVGVGTVNVAGMLKLSNVLHIEGMKANLISISQLCDD------NDFSVYF 2374
            ++FGDS K++V+G+G + ++    LSNVL ++ +  NL+S+SQLC        +D  V  
Sbjct: 764  IVFGDSGKSKVIGIGKIPISDQQSLSNVLLVDSLSYNLLSVSQLCGMGYNCLFSDVDVKI 823

Query: 2373 DKRQRCANK**QVHHSRIKKS*QLL--------PDECYEGTYMSDWAKWRSRTVV**LGH 2218
             +R+  +         R+K    L+        P+ C        W  W  R     L H
Sbjct: 824  LRREDSS----VAFTGRLKGKLYLVDFTTSKVTPETCLVAKSDKGWL-WHRR-----LAH 873

Query: 2217 VNYKHLHKLGSKQIVKEIPQFKKERKLLCEDCQIGKPIRAKHIQVGDITKINILDLMHID 2038
            V  ++L KL     +  +     E+  +C  CQ GK     H     +T    L+L+H+D
Sbjct: 874  VGMRNLAKLQKDNHIIGLTNVVFEKDRVCGACQAGKQHGVPHQSKNVVTTKRPLELLHMD 933

Query: 2037 LFGPTQVESTGGKMYALVCVDDYLTYTWIDFLGNK 1933
            LFGP    S GG  Y LV VDD+  +TW+ FL +K
Sbjct: 934  LFGPVAYISIGGSKYGLVIVDDFSRFTWVFFLSDK 968



 Score = 25.0 bits (53), Expect(3) = 1e-51
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -3

Query: 2611 LDSGCLRHMTRNKEYLVDYTVSQRQCDI 2528
            LDSGC  HMT  K+      ++Q   +I
Sbjct: 737  LDSGCTNHMTGEKDMFHTLQLTQEAQEI 764


>gb|AAX95391.1| Integrase core domain, putative [Oryza sativa Japonica Group]
            gi|108864296|gb|ABA92891.2| retrotransposon protein,
            putative, unclassified [Oryza sativa Japonica Group]
          Length = 1584

 Score =  141 bits (356), Expect(3) = 2e-78
 Identities = 66/110 (60%), Positives = 84/110 (76%)
 Frame = -2

Query: 1061 IQEELQQFERNNVWELVTRPEGVNVIGTEWIFRNKTDEEGSIISNKVRLVTQGYTQVEGL 882
            I EEL+ FERN VW LV  P G N+IGT+W+F+NK +++G I+ NK RLV QG+TQVEGL
Sbjct: 1091 IHEELENFERNKVWTLVEPPSGHNIIGTKWVFKNKQNDDGLIVRNKARLVAQGFTQVEGL 1150

Query: 881  DFDEAFAPVTRLESVRLLVYIACAKNFTLQ*MDVKSAFLNRILQKEAYVE 732
            DFDE FAPV R+E++RL +  A +K F L  MDVKSAFLN  +Q+E YV+
Sbjct: 1151 DFDETFAPVARIEAIRLFLAFAASKCFKLYQMDVKSAFLNGFIQEEVYVK 1200



 Score =  114 bits (284), Expect(3) = 2e-78
 Identities = 53/128 (41%), Positives = 80/128 (62%)
 Frame = -1

Query: 735  RTPKGFVNPKYPDHVYKLKRALYRLKQAPKA*YKRFTNYLLNKRYIRGSANKNMFIKHSA 556
            + P GF NP +P+ V+KL +ALY LKQAP+A Y R  N+LL K +     +K  F+    
Sbjct: 1200 KQPPGFENPDFPNRVFKLSKALYGLKQAPRAWYDRLKNFLLAKGFTIRKVDKTFFVLKHG 1259

Query: 555  QHVLIAHIYFNDIVFGSTSKELTEEFITSIRTEFEMSMVGELTFFISLQVRQIKEDKFLS 376
             + L   IY +D +FG ++  L  +F  ++R EFEMSM+GEL++F+ LQ++Q  +  F+ 
Sbjct: 1260 DNQLFVQIYVDDSIFGCSTHALVVDFAETMRREFEMSMMGELSYFLGLQIKQTPQGTFVH 1319

Query: 375  QAKYAKKI 352
            Q KY K +
Sbjct: 1320 QTKYTKDL 1327



 Score = 88.6 bits (218), Expect(3) = 2e-78
 Identities = 47/105 (44%), Positives = 67/105 (63%)
 Frame = -2

Query: 359  KKLVKKFGLEYGKIVRTPMSTTLNINKDEKGVSVDQHEYQSMIDGLLCLTASRLDILYNV 180
            K L++ F +E  K + TP+ +T  ++ DE G ++DQ EY SMI  LL LTASR DI + V
Sbjct: 1325 KDLLRWFKMENCKPISTPIGSTAVLDPDEDGEAIDQKEYGSMIGSLLYLTASRPDIQFAV 1384

Query: 179  RECARYQVDPKESHKKAVKRILRYILSTTEHGLFYSEDITTHLVG 45
              CAR+Q   + SH++ VKRI+RY+  T E G++YS   +  L G
Sbjct: 1385 CLCARFQASSRASHRQVVKRIMRYLNHTLEFGIWYSTSSSICLSG 1429



 Score =  117 bits (292), Expect(2) = 7e-30
 Identities = 61/161 (37%), Positives = 94/161 (58%), Gaps = 13/161 (8%)
 Frame = -3

Query: 1873 TLKRLSSDHGKEFDTS-------------QFLASKTPQQNGVVERKNITVQDMIHVMLNS 1733
            +LKR+ SD+G EF  +             +F +++ PQQNGV+ERKN  + +M   ML+ 
Sbjct: 768  SLKRIQSDNGGEFKNASFEQFCNERGLEHEFSSTRVPQQNGVIERKNRVLVEMARTMLDE 827

Query: 1732 KELSHSWWAEVPNTSIRITNRVFFRPMMNKTTYEIWKGKKPKLSYPYMFGSKCYILNDRE 1553
                  +W EV NT+  I+NRVF R  + KT+YE+  G +PK+S+  +FG KC++L    
Sbjct: 828  YNTPRKFWVEVINTACYISNRVFLRSKLGKTSYELRFGHQPKVSHLRVFGCKCFVLKS-G 886

Query: 1552 HLGKFDARSDEEIFLGYSSSSHAYRVFNRRTRIVIETINLT 1430
            +L KF+ARS   +FLGY + +  Y V    T  ++ET  ++
Sbjct: 887  NLDKFEARSTNGVFLGYPAHTRGYHVLILETNKIVETCEIS 927



 Score = 43.5 bits (101), Expect(2) = 7e-30
 Identities = 29/121 (23%), Positives = 52/121 (42%), Gaps = 20/121 (16%)
 Frame = -1

Query: 2199 HKLGSKQIVKEIPQFKKERKLLCEDC-----------QIGKPIRAKHIQVGDITKINILD 2053
            H  G K     + +  K   ++  D            ++ +    K++ + +  K N+L 
Sbjct: 640  HMTGDKNWFSSLKKASKTESIIFGDASTSAVLVTGLVKVNEKFELKNVVLFEDLKYNLLS 699

Query: 2052 L---------MHIDLFGPTQVESTGGKMYALVCVDDYLTYTWIDFLGNKVDLFLAFRKIC 1900
            +         +H    G T+V+S GGK Y LV VD++  Y+W+ F+  K + F  F  + 
Sbjct: 700  VSQIVDENFEVHFKKTG-TRVQSVGGKWYVLVIVDNFSRYSWVFFMATKDEAFQHFHSLF 758

Query: 1899 L 1897
            L
Sbjct: 759  L 759


>gb|ABA98369.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 904

 Score =  143 bits (361), Expect(3) = 8e-78
 Identities = 65/110 (59%), Positives = 85/110 (77%)
 Frame = -2

Query: 1061 IQEELQQFERNNVWELVTRPEGVNVIGTEWIFRNKTDEEGSIISNKVRLVTQGYTQVEGL 882
            + EEL+ FERN VW LV  P G N+IGT+W+F+NK +E+G ++ NK RLV QG+TQVEGL
Sbjct: 504  MHEELENFERNKVWTLVEPPSGHNIIGTKWVFKNKQNEDGLVVRNKARLVAQGFTQVEGL 563

Query: 881  DFDEAFAPVTRLESVRLLVYIACAKNFTLQ*MDVKSAFLNRILQKEAYVE 732
            DFDE FAP+ R+E++RLL+  A +K F L  MDVKSAFLN  +Q+E YV+
Sbjct: 564  DFDETFAPIARIEAIRLLLTFAASKGFKLYQMDVKSAFLNGFIQEEVYVK 613



 Score =  118 bits (295), Expect(3) = 8e-78
 Identities = 54/128 (42%), Positives = 82/128 (64%)
 Frame = -1

Query: 735 RTPKGFVNPKYPDHVYKLKRALYRLKQAPKA*YKRFTNYLLNKRYIRGSANKNMFIKHSA 556
           + P GF NP +P+H++KL +ALY LKQAP+A Y R  N+LL K +  G  +K +F+    
Sbjct: 613 KQPPGFENPDFPNHIFKLSKALYGLKQAPRAWYDRLKNFLLAKGFTMGKVDKTLFVLKHG 672

Query: 555 QHVLIAHIYFNDIVFGSTSKELTEEFITSIRTEFEMSMVGELTFFISLQVRQIKEDKFLS 376
            + L   IY +DI+FG ++  L  +F   +R EFEMSM+GEL++F+ LQ++Q  +  F+ 
Sbjct: 673 DNQLFVQIYVDDIIFGCSTHALVVDFAEIMRREFEMSMMGELSYFLGLQIKQTPQGTFVH 732

Query: 375 QAKYAKKI 352
           Q K  K +
Sbjct: 733 QTKDMKDL 740



 Score = 80.5 bits (197), Expect(3) = 8e-78
 Identities = 41/83 (49%), Positives = 57/83 (68%)
 Frame = -2

Query: 359 KKLVKKFGLEYGKIVRTPMSTTLNINKDEKGVSVDQHEYQSMIDGLLCLTASRLDILYNV 180
           K L+++F +E  K + TP+ +T  ++ DE G  VDQ EY+SMI  LL LTASR DI + V
Sbjct: 738 KDLLRRFKMENCKPISTPIGSTAVLDPDEDGEVVDQKEYRSMIGSLLYLTASRPDIQFAV 797

Query: 179 RECARYQVDPKESHKKAVKRILR 111
             CAR+Q  P+ SH++ VKRI+R
Sbjct: 798 CLCARFQASPRASHRQVVKRIMR 820



 Score =  108 bits (271), Expect = 1e-20
 Identities = 67/209 (32%), Positives = 106/209 (50%), Gaps = 10/209 (4%)
 Frame = -1

Query: 2493 GTVNVAGMLKLSNVLHIEGMKANLISISQLCDDNDFSVYFDKRQR-----CANK**QV-H 2332
            G V V    +L NV  +E +K NL+S+SQ+ D+N F V+F K +      C +    + H
Sbjct: 137  GLVKVNEKFELKNVALVEDLKYNLLSVSQIVDEN-FEVHFKKTRSKVFDSCGDSVLNISH 195

Query: 2331 HSRIKKS*QLLPDE----CYEGTYMSDWAKWRSRTVV**LGHVNYKHLHKLGSKQIVKEI 2164
            + R+ K+    P      C+   +  +   W  R     LGHV + HL +L    +V+ +
Sbjct: 196  YRRVFKADFENPVSPLITCFVAKFDKNVMFWYRR-----LGHVGFDHLTRLSGLDLVRGL 250

Query: 2163 PQFKKERKLLCEDCQIGKPIRAKHIQVGDITKINILDLMHIDLFGPTQVESTGGKMYALV 1984
            P+ KK+  L+C  C+  K +   H  +  +       L+H+D  GP +V+S GGK Y LV
Sbjct: 251  PKLKKDVDLVCTPCRHAKMVSTSHAPIVSVMTDAPGQLLHMDTVGPARVQSVGGKWYVLV 310

Query: 1983 CVDDYLTYTWIDFLGNKVDLFLAFRKICL 1897
             VDD+  Y+W+ F+  K + F  FR + L
Sbjct: 311  IVDDFSRYSWVFFMATKDEAFQHFRGLFL 339


>gb|AAR10863.1| putative copia-type pol polyprotein [Oryza sativa Japonica Group]
          Length = 649

 Score =  134 bits (338), Expect(3) = 8e-78
 Identities = 63/108 (58%), Positives = 82/108 (75%)
 Frame = -2

Query: 1061 IQEELQQFERNNVWELVTRPEGVNVIGTEWIFRNKTDEEGSIISNKVRLVTQGYTQVEGL 882
            + EEL+ FERN VW LV    G N+I T+W+F+NK +E+G I+ NK RLV QG+TQVEGL
Sbjct: 156  MHEELENFERNKVWTLVEPHSGHNIIRTKWVFKNKQNEDGLIVRNKARLVAQGFTQVEGL 215

Query: 881  DFDEAFAPVTRLESVRLLVYIACAKNFTLQ*MDVKSAFLNRILQKEAY 738
            DF+E FAPVTR+E++RLL+  A +K F L  MDVK+AFLN  +Q+E Y
Sbjct: 216  DFNETFAPVTRIEAIRLLLAFAASKGFKLYQMDVKNAFLNGFIQEEVY 263



 Score =  119 bits (297), Expect(3) = 8e-78
 Identities = 55/128 (42%), Positives = 82/128 (64%)
 Frame = -1

Query: 735 RTPKGFVNPKYPDHVYKLKRALYRLKQAPKA*YKRFTNYLLNKRYIRGSANKNMFIKHSA 556
           + P GF NP + +HV+KL +ALY LKQAP+A Y R  N+LL K +  G  +K +F+    
Sbjct: 265 KQPPGFENPDFTNHVFKLSKALYGLKQAPRARYDRLKNFLLAKGFTMGKVDKTLFVLKHG 324

Query: 555 QHVLIAHIYFNDIVFGSTSKELTEEFITSIRTEFEMSMVGELTFFISLQVRQIKEDKFLS 376
            + L   IY +DI+FG ++  L  EF  ++  EFEMSM+GEL++F+ LQ++Q  +  F+ 
Sbjct: 325 DNQLFVQIYVDDIIFGCSTHALVVEFAEAMCREFEMSMMGELSYFLGLQIKQTPQGTFVH 384

Query: 375 QAKYAKKI 352
           Q KY K +
Sbjct: 385 QTKYTKDL 392



 Score = 88.6 bits (218), Expect(3) = 8e-78
 Identities = 47/105 (44%), Positives = 69/105 (65%)
 Frame = -2

Query: 359 KKLVKKFGLEYGKIVRTPMSTTLNINKDEKGVSVDQHEYQSMIDGLLCLTASRLDILYNV 180
           K L+++F +E  K + TP+ +T  ++  E G  V+Q EY+SMI  LL LTASR DI + +
Sbjct: 390 KDLLRRFKMENCKQISTPIGSTAVLDPVEDGEVVNQKEYRSMIGSLLYLTASRPDIQFVM 449

Query: 179 RECARYQVDPKESHKKAVKRILRYILSTTEHGLFYSEDITTHLVG 45
             CAR+Q  P+ SH++AVKRI+RY+  T E G++YS   +  L G
Sbjct: 450 CLCARFQASPRASHRQAVKRIMRYLNHTLEFGMWYSTSSSICLSG 494



 Score = 85.1 bits (209), Expect = 2e-13
 Identities = 42/109 (38%), Positives = 67/109 (61%)
 Frame = -3

Query: 1756 MIHVMLNSKELSHSWWAEVPNTSIRITNRVFFRPMMNKTTYEIWKGKKPKLSYPYMFGSK 1577
            M   ML+  +    +WAE  NT+  I+N+VF    + KT+YE+  G +PK+S+  +FG K
Sbjct: 1    MARTMLDEYKTPRKFWAEAINTACYISNQVFLISKLGKTSYELRFGHQPKVSHLRVFGCK 60

Query: 1576 CYILNDREHLGKFDARSDEEIFLGYSSSSHAYRVFNRRTRIVIETINLT 1430
            C++L  R +L KF+ARS + +FLGY + +  YRV    T  ++ET  ++
Sbjct: 61   CFVLKSR-NLDKFEARSTDGLFLGYPAHTRGYRVLILETNKIVETCEVS 108


>gb|ABF97245.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 632

 Score =  134 bits (338), Expect(3) = 8e-78
 Identities = 63/108 (58%), Positives = 82/108 (75%)
 Frame = -2

Query: 1061 IQEELQQFERNNVWELVTRPEGVNVIGTEWIFRNKTDEEGSIISNKVRLVTQGYTQVEGL 882
            + EEL+ FERN VW LV    G N+I T+W+F+NK +E+G I+ NK RLV QG+TQVEGL
Sbjct: 139  MHEELENFERNKVWTLVEPHSGHNIIRTKWVFKNKQNEDGLIVRNKARLVAQGFTQVEGL 198

Query: 881  DFDEAFAPVTRLESVRLLVYIACAKNFTLQ*MDVKSAFLNRILQKEAY 738
            DF+E FAPVTR+E++RLL+  A +K F L  MDVK+AFLN  +Q+E Y
Sbjct: 199  DFNETFAPVTRIEAIRLLLAFAASKGFKLYQMDVKNAFLNGFIQEEVY 246



 Score =  119 bits (297), Expect(3) = 8e-78
 Identities = 55/128 (42%), Positives = 82/128 (64%)
 Frame = -1

Query: 735 RTPKGFVNPKYPDHVYKLKRALYRLKQAPKA*YKRFTNYLLNKRYIRGSANKNMFIKHSA 556
           + P GF NP + +HV+KL +ALY LKQAP+A Y R  N+LL K +  G  +K +F+    
Sbjct: 248 KQPPGFENPDFTNHVFKLSKALYGLKQAPRARYDRLKNFLLAKGFTMGKVDKTLFVLKHG 307

Query: 555 QHVLIAHIYFNDIVFGSTSKELTEEFITSIRTEFEMSMVGELTFFISLQVRQIKEDKFLS 376
            + L   IY +DI+FG ++  L  EF  ++  EFEMSM+GEL++F+ LQ++Q  +  F+ 
Sbjct: 308 DNQLFVQIYVDDIIFGCSTHALVVEFAEAMCREFEMSMMGELSYFLGLQIKQTPQGTFVH 367

Query: 375 QAKYAKKI 352
           Q KY K +
Sbjct: 368 QTKYTKDL 375



 Score = 88.6 bits (218), Expect(3) = 8e-78
 Identities = 47/105 (44%), Positives = 69/105 (65%)
 Frame = -2

Query: 359 KKLVKKFGLEYGKIVRTPMSTTLNINKDEKGVSVDQHEYQSMIDGLLCLTASRLDILYNV 180
           K L+++F +E  K + TP+ +T  ++  E G  V+Q EY+SMI  LL LTASR DI + +
Sbjct: 373 KDLLRRFKMENCKQISTPIGSTAVLDPVEDGEVVNQKEYRSMIGSLLYLTASRPDIQFVM 432

Query: 179 RECARYQVDPKESHKKAVKRILRYILSTTEHGLFYSEDITTHLVG 45
             CAR+Q  P+ SH++AVKRI+RY+  T E G++YS   +  L G
Sbjct: 433 CLCARFQASPRASHRQAVKRIMRYLNHTLEFGMWYSTSSSICLSG 477


>ref|NP_001183750.1| uncharacterized protein LOC100502343 [Zea mays]
            gi|238014376|gb|ACR38223.1| unknown [Zea mays]
          Length = 493

 Score =  127 bits (319), Expect(3) = 9e-77
 Identities = 63/110 (57%), Positives = 78/110 (70%)
 Frame = -2

Query: 1061 IQEELQQFERNNVWELVTRPEGVNVIGTEWIFRNKTDEEGSIISNKVRLVTQGYTQVEGL 882
            +QEEL  F RN VW LV RP   NV+GT+W+F NK DE G +  NK RL+ +GY+QVEGL
Sbjct: 1    MQEELNNFTRNEVWHLVPRPNQ-NVVGTKWVFHNKQDEHGVVTRNKARLMAKGYSQVEGL 59

Query: 881  DFDEAFAPVTRLESVRLLVYIACAKNFTLQ*MDVKSAFLNRILQKEAYVE 732
            DF E +APV RLES+R+L+  A    F L  MDVKSAFLN  +++E YVE
Sbjct: 60   DFGETYAPVARLESIRILLAYATYHGFKLYQMDVKSAFLNGPIKEEVYVE 109



 Score =  107 bits (266), Expect(3) = 9e-77
 Identities = 50/126 (39%), Positives = 82/126 (65%)
 Frame = -1

Query: 729 PKGFVNPKYPDHVYKLKRALYRLKQAPKA*YKRFTNYLLNKRYIRGSANKNMFIKHSAQH 550
           P  F + +YP++VYKL +ALY LKQAP+A Y+   ++L+   +  G A+  +F K     
Sbjct: 111 PSSFEDSEYPNYVYKLCKALYGLKQAPRAWYECLRDFLITNGFKVGKADPTLFTKTLEND 170

Query: 549 VLIAHIYFNDIVFGSTSKELTEEFITSIRTEFEMSMVGELTFFISLQVRQIKEDKFLSQA 370
           + +  IY ++I+FG+T++   EEF   +  +FEMS++GEL +F+  QV+Q++E  F+SQ 
Sbjct: 171 LFVCQIYVDNIIFGTTNESTCEEFSRIMTQKFEMSVMGELKYFLGFQVKQLQEGTFISQT 230

Query: 369 KYAKKI 352
           KY + I
Sbjct: 231 KYIQDI 236



 Score =  104 bits (259), Expect(3) = 9e-77
 Identities = 52/103 (50%), Positives = 74/103 (71%)
 Frame = -2

Query: 353 LVKKFGLEYGKIVRTPMSTTLNINKDEKGVSVDQHEYQSMIDGLLCLTASRLDILYNVRE 174
           ++ KFG++  K ++TPM T  +++ D  G SVDQ  Y+SMID LL L ASR DI+ +V  
Sbjct: 236 ILNKFGMKDAKPIKTPMGTNGHLDLDTGGKSVDQKVYRSMIDSLLYLCASRPDIMLSVCM 295

Query: 173 CARYQVDPKESHKKAVKRILRYILSTTEHGLFYSEDITTHLVG 45
           CAR+QVDPKE+H +AVK+ILRY++ T + GL+Y +  T  L+G
Sbjct: 296 CARFQVDPKEAHLRAVKQILRYLVYTPKFGLWYPQGSTFDLIG 338


>gb|AAC64917.1| gag-pol polyprotein [Glycine max]
          Length = 1550

 Score =  165 bits (417), Expect(3) = 1e-76
 Identities = 85/169 (50%), Positives = 113/169 (66%), Gaps = 13/169 (7%)
 Frame = -3

Query: 1894 IQTEKNTTLKRLSSDHGKEFDTSQFL-------------ASKTPQQNGVVERKNITVQDM 1754
            +Q EK+  +KR+ SDHG+EF+ S+F              A+ TPQQNG+VERKN T+Q+ 
Sbjct: 781  LQREKDCVIKRIRSDHGREFENSKFTEFCTSEGITHEFSAAITPQQNGIVERKNRTLQEA 840

Query: 1753 IHVMLNSKELSHSWWAEVPNTSIRITNRVFFRPMMNKTTYEIWKGKKPKLSYPYMFGSKC 1574
              VML++KEL ++ WAE  NT+  I NRV  R     T YEIWKG+KP + + ++ GS C
Sbjct: 841  ARVMLHAKELPYNLWAEAMNTACYIHNRVTLRRGTPTTLYEIWKGRKPTVKHFHICGSPC 900

Query: 1573 YILNDREHLGKFDARSDEEIFLGYSSSSHAYRVFNRRTRIVIETINLTI 1427
            YIL DRE   K D +SD  IFLGYS++S AYRVFN RTR V+E+IN+ +
Sbjct: 901  YILADREQRRKMDPKSDAGIFLGYSTNSRAYRVFNSRTRTVMESINVVV 949



 Score =  134 bits (338), Expect(3) = 1e-76
 Identities = 82/234 (35%), Positives = 123/234 (52%), Gaps = 10/234 (4%)
 Frame = -1

Query: 2550 CHKDSVIFGDSVKNRVVGVGTVNVAGMLKLSNVLHIEGMKANLISISQLCDDNDFSVYFD 2371
            C    V FGD  K ++ G+G +   G+  L+ VL ++G+ ANLISISQLCD+  F+V F 
Sbjct: 559  CSTSYVTFGDGSKGKITGMGKLVHDGLPSLNKVLLVKGLTANLISISQLCDEG-FNVNFT 617

Query: 2370 KRQRCANK**QVHHSRIKKS*QLLPDECY-----EGTYMSDWAKWRSRTVV**LGHVNYK 2206
            K +           S +        D CY     E +Y S     +   V   + H  + 
Sbjct: 618  KSECLVTN----EKSEVLMKGSRSKDNCYLWTPQETSYSSTCLFSKEDEVK--IWHQRFG 671

Query: 2205 HLHKLGSKQI-----VKEIPQFKKERKLLCEDCQIGKPIRAKHIQVGDITKINILDLMHI 2041
            HLH  G K+I     V+ IP  K E   +C +CQIGK ++  + ++   T   +L+L+H+
Sbjct: 672  HLHLRGMKKIIDKGAVRGIPNLKIEEGRICGECQIGKQVKMSNQKLQHQTTSRVLELLHM 731

Query: 2040 DLFGPTQVESTGGKMYALVCVDDYLTYTWIDFLGNKVDLFLAFRKICLAFRQRR 1879
            DL GP QVES G K YA V VDD+  +TW++F+  K D F  F+++ L  ++ +
Sbjct: 732  DLMGPMQVESLGRKRYAYVVVDDFSRFTWVNFIREKSDTFEVFKELSLRLQREK 785



 Score = 38.5 bits (88), Expect(3) = 1e-76
 Identities = 19/33 (57%), Positives = 23/33 (69%)
 Frame = -3

Query: 2656 VAHLSLSANFGDV*YLDSGCLRHMTRNKEYLVD 2558
            V H SL A+  +  YLDSGC RHMT  KE+LV+
Sbjct: 523  VVHTSLRASAKEDWYLDSGCSRHMTGVKEFLVN 555



 Score =  160 bits (405), Expect = 3e-36
 Identities = 78/113 (69%), Positives = 90/113 (79%)
 Frame = -2

Query: 1061 IQEELQQFERNNVWELVTRPEGVNVIGTEWIFRNKTDEEGSIISNKVRLVTQGYTQVEGL 882
            +QEEL+QF+RN VWELV RPEG NVIGT+WIF+NKT+EEG I  NK RLV QGYTQ+EG+
Sbjct: 1058 MQEELEQFKRNEVWELVPRPEGTNVIGTKWIFKNKTNEEGVITRNKARLVAQGYTQIEGV 1117

Query: 881  DFDEAFAPVTRLESVRLLVYIACAKNFTLQ*MDVKSAFLNRILQKEAYVEHQK 723
            DFDE FAP  RLES+RLL+ +AC   F L  MDVKSAFLN  L +EAYVE  K
Sbjct: 1118 DFDETFAPGARLESIRLLLGVACILKFKLYQMDVKSAFLNGYLNEEAYVEQPK 1170



 Score =  151 bits (382), Expect = 2e-33
 Identities = 68/135 (50%), Positives = 101/135 (74%)
 Frame = -1

Query: 756  ITKRSICRTPKGFVNPKYPDHVYKLKRALYRLKQAPKA*YKRFTNYLLNKRYIRGSANKN 577
            + + +    PKGFV+P +PDHVY+LK+ALY LKQAP+A Y+R T +L  + Y +G  +K 
Sbjct: 1160 LNEEAYVEQPKGFVDPTHPDHVYRLKKALYGLKQAPRAWYERLTEFLTQQGYRKGGIDKT 1219

Query: 576  MFIKHSAQHVLIAHIYFNDIVFGSTSKELTEEFITSIRTEFEMSMVGELTFFISLQVRQI 397
            +F+K  A++++IA IY +DIVFG  S E+   F+  +++EFEMS+VGELT+F+ LQV+Q+
Sbjct: 1220 LFVKQDAENLMIAQIYVDDIVFGGMSNEMLRHFVQQMQSEFEMSLVGELTYFLGLQVKQM 1279

Query: 396  KEDKFLSQAKYAKKI 352
            ++  FLSQ+KYAK I
Sbjct: 1280 EDSIFLSQSKYAKNI 1294



 Score =  107 bits (267), Expect(2) = 1e-21
 Identities = 57/113 (50%), Positives = 71/113 (62%)
 Frame = -2

Query: 383  FFLKQNMQKKLVKKFGLEYGKIVRTPMSTTLNINKDEKGVSVDQHEYQSMIDGLLCLTAS 204
            F  +    K +VKKFG+E     RTP  T L ++KDE G SVDQ  Y+SMI  LL LTAS
Sbjct: 1284 FLSQSKYAKNIVKKFGMENASHKRTPAPTHLKLSKDEAGTSVDQSLYRSMIGSLLYLTAS 1343

Query: 203  RLDILYNVRECARYQVDPKESHKKAVKRILRYILSTTEHGLFYSEDITTHLVG 45
            R DI Y V  CARYQ +PK SH   VKRIL+Y+  T+++G+ Y     + LVG
Sbjct: 1344 RPDITYAVGGCARYQANPKISHLNQVKRILKYVNGTSDYGIMYCHCSDSMLVG 1396



 Score = 25.8 bits (55), Expect(2) = 1e-21
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -1

Query: 45   YSDADWAVNCNDRKS 1
            Y DADWA + +DRKS
Sbjct: 1397 YCDADWAGSVDDRKS 1411