BLASTX nr result
ID: Catharanthus22_contig00016863
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus22_contig00016863
(5156 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAX96295.1| retrotransposon protein, putative, Ty3-gypsy sub-... 801 0.0
gb|EOY03326.1| DNA/RNA polymerases superfamily protein [Theobrom... 801 0.0
gb|AAL83344.1|AC074282_11 Putative polyprotein [Oryza sativa Jap... 800 0.0
dbj|BAL46523.1| hypothetical protein [Gentiana scabra x Gentiana... 798 0.0
dbj|BAH80026.1| putative retrotransposon protein [Oryza sativa I... 798 0.0
gb|ABA97812.1| retrotransposon protein, putative, Ty3-gypsy subc... 793 0.0
gb|AAO73263.1| putative gag-pol polyprotein [Oryza sativa Japoni... 792 0.0
gb|ABA98372.1| retrotransposon protein, putative, Ty3-gypsy subc... 788 0.0
emb|CAH65834.1| OSIGBa0124C14.1 [Oryza sativa Indica Group] 788 0.0
gb|ABA99289.1| retrotransposon protein, putative, Ty3-gypsy subc... 785 0.0
gb|AAM74399.1|AC119149_14 Putative retroelement [Oryza sativa Ja... 785 0.0
gb|AAM01156.1|AC113336_8 Putative retroelement [Oryza sativa Jap... 783 0.0
emb|CAH66048.1| OSIGBa0131F24.2 [Oryza sativa Indica Group] 783 0.0
emb|CAE05306.2| OSJNBa0056L23.4 [Oryza sativa Japonica Group] 782 0.0
gb|AAN09860.1| putative polyprotein [Oryza sativa Japonica Group] 782 0.0
gb|ABG65969.1| retrotransposon protein, putative, Ty3-gypsy subc... 782 0.0
gb|ABF95991.1| retrotransposon protein, putative, Ty3-gypsy subc... 780 0.0
gb|AAU44125.1| putative polyprotein [Oryza sativa Japonica Group] 780 0.0
emb|CAH68025.1| OSIGBa0136O08-OSIGBa0153H12.3 [Oryza sativa Indi... 780 0.0
gb|AAV32172.1| putative polyprotein [Oryza sativa Japonica Group] 779 0.0
>gb|AAX96295.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa
Japonica Group] gi|77548986|gb|ABA91783.1|
retrotransposon protein, putative, Ty3-gypsy subclass
[Oryza sativa Japonica Group]
Length = 1760
Score = 801 bits (2069), Expect(3) = 0.0
Identities = 385/662 (58%), Positives = 498/662 (75%), Gaps = 15/662 (2%)
Frame = +3
Query: 2229 VFNLYLDKFVVIFIDDILVYSPNPEVHEQHLRKVLQTLREHKLYAKFSKCEFWMSQVTFL 2408
VF +LDKFVV+FIDDIL+YS E HEQHLR VL+ L+EH+LYAKFSKC+FW+++V FL
Sbjct: 977 VFMEFLDKFVVVFIDDILIYSKTEEEHEQHLRLVLEKLKEHQLYAKFSKCDFWLTEVKFL 1036
Query: 2409 GHVITQEGISVDPAKVEAVTYWTQPKTPTEVRSFLGMAGYYRRFIKDFSRIAGPLTQLTR 2588
GHVIT +G++VDP+ VE+VT WT PKT +++RSFLG+AGYYRRFI++FSRIA P+T+L +
Sbjct: 1037 GHVITAQGVAVDPSNVESVTKWTPPKTVSQIRSFLGLAGYYRRFIENFSRIARPMTRLLK 1096
Query: 2589 KATKFEWTEKCERSFQELKNRLTSAPVLTLLDPNKEFSLYTDASGEGLGAVLMQDRKVVA 2768
K KF+WT +C++SF+ELK +L SAPVL L D K+F +Y DAS GLG VLMQ+ +VVA
Sbjct: 1097 KDEKFKWTAECDKSFEELKKKLVSAPVLILPDQMKDFQVYCDASRHGLGCVLMQEGRVVA 1156
Query: 2769 YISRKLKDHERNYPTHDLELAAIVFALKKWRHYLYRAKYEIFTDHKSLKYLFSQKDLNMR 2948
Y SR+L+ HE NYPTHDLELAA+V ALK WRHYL + E++TDHKSLKY+F+Q DLN+R
Sbjct: 1157 YASRQLRPHEGNYPTHDLELAAVVHALKIWRHYLIGNRCEVYTDHKSLKYIFTQPDLNLR 1216
Query: 2949 QRRWMELLEEYRCPINYHPGKANVVADALSRKAK---------------ISSLSLTSTLQ 3083
QRRW+EL+++Y I+YHPGKANVVADALSRK+ +++L TL
Sbjct: 1217 QRRWLELIKDYDMSIHYHPGKANVVADALSRKSYCTALCIEGMCEELRFVAALEARPTLV 1276
Query: 3084 EDIRSAQKSNKEFQEFKNRVKAKGLEDFRTLEADGSLYFRNRLCVPNDTELKRKILEEAH 3263
+ +R+AQ ++ E E K ++ DF + G+++ RLCVP+D ELK IL EAH
Sbjct: 1277 DQVRAAQVNDSEIAELKKNMRVGKARDFHE-DEHGTIWLGERLCVPDDKELKDLILTEAH 1335
Query: 3264 RSKYSMHPGENKMYKDLKQKFWWNGMKREIAEYVAACLTCQRVKAEHQKSAGLLQPLPFP 3443
+++YS+HPG KMY+DLK+KFWW M+REIAE+VA C CQRVKAEHQ+ AGLLQPL P
Sbjct: 1336 QTQYSIHPGSTKMYQDLKEKFWWVSMRREIAEFVALCDVCQRVKAEHQRPAGLLQPLQIP 1395
Query: 3444 EWKWDHVTMDFVTGLPRTKGYKDAIWVIVDRLTKVAHFIAINISYPLDKLTQIYVDEIVR 3623
EWKW+ + MDF+TGLPRT D+IWV+VDRLTKVAHFI ++ +Y +L ++Y+ I+
Sbjct: 1396 EWKWEEIGMDFITGLPRTSSGHDSIWVVVDRLTKVAHFIPVHTTYTGKRLAELYLSRIIC 1455
Query: 3624 LHGVPVDIVSDRDPRFASMFWPKFQAAMGTNLSYSTTAHPQTDGQSERTIQTLEDMLRAC 3803
LHGVP IVSDR +F S FW K Q +GT L++ST HPQTDGQ+ER Q LEDMLRAC
Sbjct: 1456 LHGVPKKIVSDRGSQFTSKFWQKLQEELGTRLNFSTAYHPQTDGQTERVNQILEDMLRAC 1515
Query: 3804 ALDFGNKWVDNLAFAEFAYNNSYHSSIGMAPFEALYGRRCRTPLYWDEVGVRSHWRQRNL 3983
ALDFG W NL +AEF+YNNSY +S+ MAPFEALYGR+CRTPL+WD+ G R +
Sbjct: 1516 ALDFGGAWDKNLPYAEFSYNNSYQASLQMAPFEALYGRKCRTPLFWDQTGERQLFGTE-- 1573
Query: 3984 MPELEEMQKQVKIIQDRLQTAKSRQKSYADNRRRDLEFNVRDRVFLKLTPHRGKLRYPRR 4163
L E +++V+II++RL+ A+SRQKSYADNRRR+L F D V+L++TP G R+ +
Sbjct: 1574 --VLTEAEEKVRIIRERLRIAQSRQKSYADNRRRELTFEAGDYVYLRVTPLWGVHRFQTK 1631
Query: 4164 GK 4169
GK
Sbjct: 1632 GK 1633
Score = 290 bits (741), Expect(3) = 0.0
Identities = 184/482 (38%), Positives = 249/482 (51%), Gaps = 13/482 (2%)
Frame = +2
Query: 827 GSATAPYKRPGQG------------PWKPRDFKRSRGEQRTGNEGRPTLIPGGSHRICTC 970
GS P+ PGQ P+ P +F R+ RT E P+
Sbjct: 548 GSHQRPHFTPGQQGGPTTMIVRQYRPFNPSNFPRAPVAVRTTMESGPSA----------- 596
Query: 971 YGRSGHVAEMCYRKLRLCFKCGKPGHTKDQCPEMQQVTPEMSRKAGRPPIMRGTTEGRNN 1150
A+ K CF CG+ GH D+CP+ ++ P
Sbjct: 597 ------QAKETGAKPGSCFNCGELGHFADKCPKPRRAGPRF------------------- 631
Query: 1151 KPQIKAKVYALDGLPVDTEVEVVEGMIKIFSQLARVLIDPGATHSFVSLHFIKHTPIPPV 1330
I+A+V + T EVV G + S A VL D GATHSF+S F+ +
Sbjct: 632 ---IQARVNHVSAEEAQTAPEVVLGTFPVNSIPATVLFDSGATHSFISKKFVGMHGLIRE 688
Query: 1331 NMHYQLIVSTPMGVNKITEVKY-PDCDICVENVVLSGDLIALPLEGYDVILGMDWLSKHY 1507
+ + V TP N T V++ P I ++ +LI L + DVILGMDWL+K
Sbjct: 689 ELSTLMRVHTPG--NSSTSVQFSPSITIEIQRSPFLANLILLESKDLDVILGMDWLTKFK 746
Query: 1508 AQLDCRRKLVKFSRPSMPILVFQGKRTKRENPFLSAMKARKLLWKGCQGYLVYLLNKPKE 1687
+DC + V + +V++ + ++ L+ ++A + + K+
Sbjct: 747 GVIDCANRTVTLTNEKGETVVYKSPDSPKQGVSLNQIEAE-----------IPVDTVEKK 795
Query: 1688 EVKLDIVPVVRELRDVFPEELTTLPLDREVEFGIELVPDAKPISRTPYRMAXXXXXXXXX 1867
KL+ +P+V E +VFPE+LTT+P RE+EF I+L P PI + PYRMA
Sbjct: 796 LRKLEDIPIVCEYPEVFPEDLTTMPPKREIEFRIDLAPGIAPIYKRPYRMAANELAEVKK 855
Query: 1868 XXXXXXXXGYIRPSTSPWGAPVLFVKKKDGTLRMCIDYRGLNNVTVKNKYLLPLIDELFD 2047
GYIRPSTSPWGAPV+FV+KKD T RMC+DYR LN VT+KNKY LP ID+LFD
Sbjct: 856 QVDEQLQKGYIRPSTSPWGAPVIFVEKKDKTKRMCVDYRALNEVTIKNKYPLPRIDDLFD 915
Query: 2048 QLRGAGYFSKLDLR*GYYQVRIREKDIPMTAFNTRYGHYEFVVMPFELTNAPATFMDLIH 2227
QL+GA FSK+DLR GY+Q+RIRE+DIP TAF TRYG YE VM F LTNAPA FM+L++
Sbjct: 916 QLKGAKVFSKIDLRSGYHQLRIREEDIPKTAFTTRYGLYECTVMSFRLTNAPAFFMNLMN 975
Query: 2228 SL 2233
+
Sbjct: 976 KV 977
Score = 81.3 bits (199), Expect(3) = 0.0
Identities = 56/184 (30%), Positives = 86/184 (46%)
Frame = +1
Query: 238 ATRRNEQVPVTGADEALERFLKFRPLEFYGDVEQEIKAGLFLEQLNDIYDTLKYEDALRV 417
A ++++Q L FL+ RP F + ++A +L + + L+ D +V
Sbjct: 347 AEQQHQQFGPPPPQSKLPEFLRVRPPTF-SNTTNPMEANDWLHAIEKKLNLLQCNDQEKV 405
Query: 418 TFAAFRLRGMAMDWWLRASEARTLKNQPWTCNDFQEEFKKEYIPRWVREQREDEFQQLRQ 597
FA +L+G A WW R + T +F F+K +P V Q++ EF+ L Q
Sbjct: 406 AFATHQLQGPASAWWDNHMATRPPGTEV-TWAEFCRSFRKAQVPDGVVAQKKREFRALHQ 464
Query: 598 GNLTVAQYTAKFNRLAKYCLRLIDTDENKTRQFVKGLRVELQRALAPLPPMGFAAAVEAA 777
GN TV +Y +FNRL +Y + TD K +F+ GL EL L + F V+ A
Sbjct: 465 GNRTVTEYLHEFNRLTRYAPEDVRTDAEKQEKFMAGLDDELTNQLISGDYVDFERLVDKA 524
Query: 778 TRTE 789
R E
Sbjct: 525 IRQE 528
Score = 119 bits (297), Expect = 2e-23
Identities = 64/169 (37%), Positives = 96/169 (56%)
Frame = +1
Query: 4006 RNKLR*FKTGFKQLKVDRRAMPTIEEGIWSLM*EIEFS*NLRRIAGSCDIRGEESLSPRH 4185
R +LR ++ K +RR T E G + + + + G + + L+PR
Sbjct: 1586 RERLRIAQSRQKSYADNRRRELTFEAGDYVYL-------RVTPLWGVHRFQTKGKLAPRF 1638
Query: 4186 IGPFGIIDRIGKVAYRLALPNERIGIHDVFHVSQLKKYHPAPDHVLNDDQLKLQVDLSYE 4365
+GP+ I++R G+VAY+L LP+ IGIHDVFHVSQLKK P+ + + + +Q DL+Y
Sbjct: 1639 VGPYKILERRGEVAYQLELPSNMIGIHDVFHVSQLKKCLRVPEEQADSEHIDIQEDLTYV 1698
Query: 4366 ERPTEIIERSVKELRGRQIPMCKVIWKHHGIEEATWETEEYLKKKYPEL 4512
E+P I++ S + R + C+V W HH EEATWE E+ LK +P L
Sbjct: 1699 EKPVRILDTSERGTRNKVTRFCRVQWSHHSEEEATWEREDELKAAHPHL 1747
>gb|EOY03326.1| DNA/RNA polymerases superfamily protein [Theobroma cacao]
Length = 1447
Score = 801 bits (2068), Expect(2) = 0.0
Identities = 396/664 (59%), Positives = 497/664 (74%), Gaps = 11/664 (1%)
Frame = +3
Query: 2229 VFNLYLDKFVVIFIDDILVYSPNPEVHEQHLRKVLQTLREHKLYAKFSKCEFWMSQVTFL 2408
VF YLDKFVV+FIDDIL+YS + E HEQHL+ VLQ LREH+LYAKFSKCEFW+ V FL
Sbjct: 686 VFKPYLDKFVVVFIDDILIYSKSREEHEQHLKIVLQILREHRLYAKFSKCEFWLESVAFL 745
Query: 2409 GHVITQEGISVDPAKVEAVTYWTQPKTPTEVRSFLGMAGYYRRFIKDFSRIAGPLTQLTR 2588
GHV+++EGI VD K+EAV W +P + +E+RSF+G+AGYYRRF+KDFS+I PLT+LTR
Sbjct: 746 GHVVSKEGIRVDTKKIEAVEKWPRPTSVSEIRSFVGLAGYYRRFVKDFSKIVAPLTKLTR 805
Query: 2589 KATKFEWTEKCERSFQELKNRLTSAPVLTLLDPNKEFSLYTDASGEGLGAVLMQDRKVVA 2768
K TKFEW++ CE SF++LK LT+APVL+L ++++ DASG GLG VLMQ KV+A
Sbjct: 806 KDTKFEWSDACENSFEKLKACLTTAPVLSLPQGTGGYTMFCDASGVGLGCVLMQHGKVIA 865
Query: 2769 YISRKLKDHERNYPTHDLELAAIVFALKKWRHYLYRAKYEIFTDHKSLKYLFSQKDLNMR 2948
Y SR+LK HE+NYP HDLE+AAIVFALK WRHYLY EI+TDHKSLKY+F Q+DLN+R
Sbjct: 866 YASRQLKRHEQNYPIHDLEMAAIVFALKIWRHYLYGETCEIYTDHKSLKYIFQQRDLNLR 925
Query: 2949 QRRWMELLEEYRCPINYHPGKANVVADALSRKA--KISSLSLT-STLQEDIRSAQKSNKE 3119
Q RWMELL++Y C I YHPGKANVVADALSRK+ ++ +S+ L + I+ AQ
Sbjct: 926 QCRWMELLKDYDCTILYHPGKANVVADALSRKSMGSLAHISIVRPILMDKIKEAQS---- 981
Query: 3120 FQEFKNRVKAKGLED-------FRTLEADGSLYFRNRLCVPNDTELKRKILEEAHRSKYS 3278
K+ K LED T DG L + RL VP+ L+R+ILEEAH + Y
Sbjct: 982 ----KDEFVIKALEDPQGRKGKMFTKGTDGVLRYGTRLYVPDGDGLRREILEEAHMAAYV 1037
Query: 3279 MHPGENKMYKDLKQKFWWNGMKREIAEYVAACLTCQRVKAEHQKSAGLLQPLPFPEWKWD 3458
+HPG KMY+DLK+ +WW G+KR++AE+V+ CL CQ+VKAEHQK AGLLQPLP PEWKW+
Sbjct: 1038 VHPGATKMYQDLKEVYWWEGLKRDVAEFVSKCLVCQQVKAEHQKPAGLLQPLPVPEWKWE 1097
Query: 3459 HVTMDFVTGLPRTKGYKDAIWVIVDRLTKVAHFIAINISYPLDKLTQIYVDEIVRLHGVP 3638
H+ MDFVTGLPRT G D+IW++VDRLTK AHF+ + +Y + ++YVDEIVRLHG+P
Sbjct: 1098 HIAMDFVTGLPRTSGGYDSIWIVVDRLTKSAHFLPVKTTYGAAQYARVYVDEIVRLHGIP 1157
Query: 3639 VDIVSDRDPRFASMFWPKFQAAMGTNLSYSTTAHPQTDGQSERTIQTLEDMLRACALDFG 3818
+ IVSDR +F S FW K Q A+GT L +ST HPQTDGQSERTIQTLE MLRAC +D G
Sbjct: 1158 ISIVSDRGAQFTSRFWGKLQEALGTKLDFSTAFHPQTDGQSERTIQTLEAMLRACVIDLG 1217
Query: 3819 NKWVDNLAFAEFAYNNSYHSSIGMAPFEALYGRRCRTPLYWDEVGVRSHWRQRNLMPEL- 3995
+W L EFAYNNS+ +SI MAPFEALYGRRCR+P+ W EVG R + L PEL
Sbjct: 1218 VRWEQYLPLVEFAYNNSFQTSIQMAPFEALYGRRCRSPIGWLEVGER-----KLLGPELV 1272
Query: 3996 EEMQKQVKIIQDRLQTAKSRQKSYADNRRRDLEFNVRDRVFLKLTPHRGKLRYPRRGKFK 4175
++ +++ +I+ R+ TA+SRQKSYADNRRRDLEF V D VFLK++P +G +R+ ++GK
Sbjct: 1273 QDATEKIHMIRQRMLTAQSRQKSYADNRRRDLEFQVGDHVFLKVSPTKGVMRFGKKGKL- 1331
Query: 4176 SPTY 4187
SP Y
Sbjct: 1332 SPRY 1335
Score = 345 bits (885), Expect(2) = 0.0
Identities = 183/355 (51%), Positives = 232/355 (65%)
Frame = +2
Query: 1163 KAKVYALDGLPVDTEVEVVEGMIKIFSQLARVLIDPGATHSFVSLHFIKHTPIPPVNMHY 1342
+A+V+AL T VV G++ + + ARVL DPGATHSF+S F V
Sbjct: 330 QARVFALTQQEAQTSNAVVSGILSVCNMNARVLFDPGATHSFISTCFASRLGRGRVRREE 389
Query: 1343 QLIVSTPMGVNKITEVKYPDCDICVENVVLSGDLIALPLEGYDVILGMDWLSKHYAQLDC 1522
QL+VSTP+ + E +Y C + V++ S +L+ L +DVILGM+WLS +A +DC
Sbjct: 390 QLVVSTPLKEIFVAEWEYESCVVRVKDKDTSVNLVVLDTLDFDVILGMNWLSPCHASVDC 449
Query: 1523 RRKLVKFSRPSMPILVFQGKRTKRENPFLSAMKARKLLWKGCQGYLVYLLNKPKEEVKLD 1702
KLV+F P P QG R+ +S + AR+LL +GC GYL + + + +
Sbjct: 450 YHKLVRFDFPGEPSFSIQGDRSNAPTNLISVISARRLLRQGCIGYLAVVKDSQAKIGDVT 509
Query: 1703 IVPVVRELRDVFPEELTTLPLDREVEFGIELVPDAKPISRTPYRMAXXXXXXXXXXXXXX 1882
V VV+E DVFPEEL +LP +REVEF I+L+PD +PIS PYRMA
Sbjct: 510 QVSVVKEFVDVFPEELPSLPPEREVEFCIDLIPDTRPISIPPYRMAPAELKELKDQLEDL 569
Query: 1883 XXXGYIRPSTSPWGAPVLFVKKKDGTLRMCIDYRGLNNVTVKNKYLLPLIDELFDQLRGA 2062
G+IRPS SPWGAPVLFVKKKDG+LR+CIDYR LN VTVKNKY LP ID+LFDQL+GA
Sbjct: 570 LDKGFIRPSVSPWGAPVLFVKKKDGSLRLCIDYRQLNKVTVKNKYPLPRIDDLFDQLQGA 629
Query: 2063 GYFSKLDLR*GYYQVRIREKDIPMTAFNTRYGHYEFVVMPFELTNAPATFMDLIH 2227
FSK+DLR GY+Q+RIR +DIP TAF TRYGHYEF+VM F LTNAPA FMDL++
Sbjct: 630 QCFSKIDLRSGYHQLRIRNEDIPKTAFRTRYGHYEFLVMSFGLTNAPAAFMDLMN 684
Score = 137 bits (346), Expect = 4e-29
Identities = 60/116 (51%), Positives = 86/116 (74%)
Frame = +1
Query: 4171 LSPRHIGPFGIIDRIGKVAYRLALPNERIGIHDVFHVSQLKKYHPAPDHVLNDDQLKLQV 4350
LSPR+IGPF I++++G VAYRLALP + IH VFHVS L+KY+P P HV+ + ++LQ
Sbjct: 1331 LSPRYIGPFEILEKVGAVAYRLALPPDLSNIHPVFHVSMLRKYNPDPSHVIRYETIQLQD 1390
Query: 4351 DLSYEERPTEIIERSVKELRGRQIPMCKVIWKHHGIEEATWETEEYLKKKYPELID 4518
DL+YEE+P I++R VK+LR + + KV+W++H EE TWE E+ ++ K+P L D
Sbjct: 1391 DLTYEEQPVAILDRQVKKLRSKDVASVKVLWRNHTSEEVTWEAEDEMRTKHPHLFD 1446
Score = 92.4 bits (228), Expect = 2e-15
Identities = 60/176 (34%), Positives = 90/176 (51%), Gaps = 1/176 (0%)
Frame = +1
Query: 277 DEALERFLKFRPLEFYGDVEQEIKAGLFLEQLNDIYDTLKYEDALRVTFAAFRLRGMAMD 456
D +L FLK +P F G E K +FL+++ I L V AAF+L +A +
Sbjct: 42 DISLPDFLKLKPPTFSGSDASE-KPQVFLDKMEKICKALGCSSVRSVELAAFQLEDVAQE 100
Query: 457 WWLRASEARTLKNQPWTCNDFQEEFKKEYIPRWVREQREDEFQQLRQ-GNLTVAQYTAKF 633
W+ R P ++F F ++P VR R EF+ L Q ++TV++Y KF
Sbjct: 101 WYSSLCRGRPTNATPLAWSEFSVAFLDRFLPLSVRNARAREFETLVQTSSMTVSEYDIKF 160
Query: 634 NRLAKYCLRLIDTDENKTRQFVKGLRVELQRALAPLPPMGFAAAVEAATRTEMASS 801
+LA+Y L+ T+E K ++FV GL L RA+A ++ AV+ A R EM +S
Sbjct: 161 TQLARYAPYLVSTEEMKIQRFVDGLVEPLFRAVASRDFTTYSTAVDRAQRIEMRTS 216
>gb|AAL83344.1|AC074282_11 Putative polyprotein [Oryza sativa Japonica Group]
gi|20042905|gb|AAM08733.1|AC116601_26 Putative
polyprotein [Oryza sativa Japonica Group]
gi|31429938|gb|AAP51922.1| retrotransposon protein,
putative, Ty3-gypsy subclass [Oryza sativa Japonica
Group]
Length = 1443
Score = 800 bits (2067), Expect(3) = 0.0
Identities = 399/680 (58%), Positives = 497/680 (73%), Gaps = 33/680 (4%)
Frame = +3
Query: 2229 VFNLYLDKFVVIFIDDILVYSPNPEVHEQHLRKVLQTLREHKLYAKFSKCEFWMSQVTFL 2408
VF YLDKFVV+FIDDIL+YS E HE+HLR L+ LREH+LYAKFSKCEFW+S+V FL
Sbjct: 646 VFMEYLDKFVVVFIDDILIYSRTKEEHEEHLRLALEMLREHQLYAKFSKCEFWLSEVKFL 705
Query: 2409 GHVITQEGISVDPAKVEAVTYWTQPKTPTEVRSFLGMAGYYRRFIKDFSRIAGPLTQLTR 2588
GHVI+ G++VDP+ VE+VT W QPKT +E+RSFLG+AGYYRRFI++FS+IA P+T+L +
Sbjct: 706 GHVISAGGVAVDPSNVESVTNWKQPKTVSEIRSFLGLAGYYRRFIENFSKIAKPMTRLLQ 765
Query: 2589 KATKFEWTEKCERSFQELKNRLTSAPVLTLLDPNKEFSLYTDASGEGLGAVLMQDRKVVA 2768
K K++W+E+CE+SFQELKNRL SAP+L L DP K F +Y D S GLG VLMQD KVVA
Sbjct: 766 KDVKYKWSEECEQSFQELKNRLISAPILILPDPKKGFQVYCDTSKLGLGCVLMQDGKVVA 825
Query: 2769 YISRKLKDHERNYPTHDLELAAIVFALKKWRHYLYRAKYEIFTDHKSLKYLFSQKDLNMR 2948
Y SR+L+ HE+NYPTHDLELAA+V ALK WRHYL+ + E++TDHKSLKY+F+Q DLNMR
Sbjct: 826 YASRQLRPHEKNYPTHDLELAAVVHALKIWRHYLFGTRTEMYTDHKSLKYIFTQPDLNMR 885
Query: 2949 QRRWMELLEEYRCPINYHPGKANVVADALSRKAK-------------------------- 3050
QRRW+EL+++Y I+YHPGKANVVADALSRK
Sbjct: 886 QRRWLELIKDYDMGIHYHPGKANVVADALSRKGYCNATEGRQLPLELCKEFEILNLGIVS 945
Query: 3051 ---ISSLSLTSTLQEDIRSAQKSNKEFQEFK---NRVKAKG-LEDFRTLEADGSLYFRNR 3209
+++L TL + +R AQ ++ + QE K R KA G LED G+++ R
Sbjct: 946 RGFVAALEAKPTLIDQVREAQINDPDIQEIKKNMRRGKAIGFLED-----EQGTVWLGER 1000
Query: 3210 LCVPNDTELKRKILEEAHRSKYSMHPGENKMYKDLKQKFWWNGMKREIAEYVAACLTCQR 3389
+CVP++ +LK IL+EAH + YS+HPG KMY+DLK++FWW MKREIAEYVA C CQR
Sbjct: 1001 ICVPDNKDLKDAILKEAHDTLYSIHPGSTKMYQDLKERFWWASMKREIAEYVAVCDVCQR 1060
Query: 3390 VKAEHQKSAGLLQPLPFPEWKWDHVTMDFVTGLPRTKGYKDAIWVIVDRLTKVAHFIAIN 3569
VKAEHQK AGLLQPL PEWKW+ + MDF+TGLPRT D+IWVIVDRLTKVAHFI +
Sbjct: 1061 VKAEHQKPAGLLQPLKIPEWKWEEIGMDFITGLPRTSSGHDSIWVIVDRLTKVAHFIPVK 1120
Query: 3570 ISYPLDKLTQIYVDEIVRLHGVPVDIVSDRDPRFASMFWPKFQAAMGTNLSYSTTAHPQT 3749
+Y +L ++Y+ IV LHGVP IVSDR +F S FW K Q MG+ L++ST HPQT
Sbjct: 1121 TTYSGSRLAELYMARIVCLHGVPKKIVSDRGSQFTSNFWKKLQEEMGSKLNFSTAYHPQT 1180
Query: 3750 DGQSERTIQTLEDMLRACALDFGNKWVDNLAFAEFAYNNSYHSSIGMAPFEALYGRRCRT 3929
DGQ+ER Q LEDMLRACALDFG W NL +AEF+YNNSY +S+ MAP+EALYGR+CRT
Sbjct: 1181 DGQTERVNQILEDMLRACALDFGGSWDKNLPYAEFSYNNSYQASLQMAPYEALYGRKCRT 1240
Query: 3930 PLYWDEVGVRSHWRQRNLMPELEEMQKQVKIIQDRLQTAKSRQKSYADNRRRDLEFNVRD 4109
PL WD+ G R + L E +++VKIIQ+RL+ A+SR KSYADNRRRDL F D
Sbjct: 1241 PLLWDQTGERQVFG----TDILREAEEKVKIIQERLRVAQSRHKSYADNRRRDLSFEEGD 1296
Query: 4110 RVFLKLTPHRGKLRYPRRGK 4169
V+L++TP RG R+ +GK
Sbjct: 1297 YVYLRVTPFRGVHRFHTKGK 1316
Score = 276 bits (705), Expect(3) = 0.0
Identities = 160/407 (39%), Positives = 225/407 (55%), Gaps = 2/407 (0%)
Frame = +2
Query: 1019 LCFKCGKPGHTKDQCPEMQQVTPEMSRKAGRPPIMRGTTEGRNNK--PQIKAKVYALDGL 1192
+CF CG PGH D+CP+ ++V +NN P KA+V +
Sbjct: 281 VCFNCGDPGHYADKCPKPRRVK---------------VVPAQNNSTVPASKARVNHVAAA 325
Query: 1193 PVDTEVEVVEGMIKIFSQLARVLIDPGATHSFVSLHFIKHTPIPPVNMHYQLIVSTPMGV 1372
+V+ G + S A VL D GATHSF+S+ F + + ++ + L+VSTP
Sbjct: 326 EAQDAPDVILGTFPVNSVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRHPLMVSTPSN- 384
Query: 1373 NKITEVKYPDCDICVENVVLSGDLIALPLEGYDVILGMDWLSKHYAQLDCRRKLVKFSRP 1552
++ + P I ++ V +LI L + DVILGMDWL++H +DC + V +
Sbjct: 385 QALSLQRSPSVRIEIKGVPFLANLILLESKDLDVILGMDWLARHKGVIDCANRKVTLTSN 444
Query: 1553 SMPILVFQGKRTKRENPFLSAMKARKLLWKGCQGYLVYLLNKPKEEVKLDIVPVVRELRD 1732
++ LS+ R L ++ L+ +P+VRE D
Sbjct: 445 DGRVVTVHA---------LSSESLRSRL----------------NQITLEEIPIVREYPD 479
Query: 1733 VFPEELTTLPLDREVEFGIELVPDAKPISRTPYRMAXXXXXXXXXXXXXXXXXGYIRPST 1912
VFP++L +P R++EF I+LVP I + PYRMA GYI+PS+
Sbjct: 480 VFPDDLPGMPPKRDIEFRIDLVPGTTLIHKRPYRMAANELAEVKRQVDDLLQKGYIKPSS 539
Query: 1913 SPWGAPVLFVKKKDGTLRMCIDYRGLNNVTVKNKYLLPLIDELFDQLRGAGYFSKLDLR* 2092
SPWGAPV+FV+KKD T RMC+DYR LN+VT+KNKY LP ID+LFDQL+GA FSK+DLR
Sbjct: 540 SPWGAPVIFVEKKDHTQRMCVDYRALNDVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRS 599
Query: 2093 GYYQVRIREKDIPMTAFNTRYGHYEFVVMPFELTNAPATFMDLIHSL 2233
GY+Q+RI+E+DIP TAF RYG +E VM F LTNA A FM+L++ +
Sbjct: 600 GYHQLRIKEEDIPKTAFTIRYGLFECTVMSFGLTNALAFFMNLMNKV 646
Score = 115 bits (287), Expect(3) = 0.0
Identities = 54/114 (47%), Positives = 75/114 (65%)
Frame = +1
Query: 4171 LSPRHIGPFGIIDRIGKVAYRLALPNERIGIHDVFHVSQLKKYHPAPDHVLNDDQLKLQV 4350
L+PR +GP+ I+ R G+VAY+L LP G+H+VFHVSQLKK P N +Q+++Q
Sbjct: 1317 LAPRFVGPYKIVSRRGEVAYQLELPQSLAGVHNVFHVSQLKKCLRVPTEEANLEQIEVQE 1376
Query: 4351 DLSYEERPTEIIERSVKELRGRQIPMCKVIWKHHGIEEATWETEEYLKKKYPEL 4512
DL+Y E+P I+E + + R R I CKV W +H EE+TWE E+ LK +P L
Sbjct: 1377 DLTYVEKPIRILEINERRTRNRVIRFCKVQWSNHSEEESTWEREDELKSAHPHL 1430
Score = 85.5 bits (210), Expect = 2e-13
Identities = 57/174 (32%), Positives = 86/174 (49%)
Frame = +1
Query: 268 TGADEALERFLKFRPLEFYGDVEQEIKAGLFLEQLNDIYDTLKYEDALRVTFAAFRLRGM 447
T A L FL+ RP F ++AG +L + D L+ D +V+FA+ +L G
Sbjct: 24 TLAQNKLAEFLRVRPPVF-SSTTNPVEAGDWLHAIEKKLDLLQCTDQEKVSFASHQLHGP 82
Query: 448 AMDWWLRASEARTLKNQPWTCNDFQEEFKKEYIPRWVREQREDEFQQLRQGNLTVAQYTA 627
A +WW R + +P T +F F+K +IP V ++ EF+ L QG+ +V +Y
Sbjct: 83 ASEWWDHFRLNR-ITAEPITWLEFTAAFRKTHIPSGVVSLKKKEFRSLTQGSRSVTEYLH 141
Query: 628 KFNRLAKYCLRLIDTDENKTRQFVKGLRVELQRALAPLPPMGFAAAVEAATRTE 789
+FNRLA+Y + DE + +F+ GL EL L F V+ A R E
Sbjct: 142 EFNRLARYAPEDVRNDEERQEKFLGGLNDELSYPLMVGDYPDFQKLVDKAIRQE 195
>dbj|BAL46523.1| hypothetical protein [Gentiana scabra x Gentiana triflora]
Length = 1152
Score = 798 bits (2062), Expect(3) = 0.0
Identities = 393/683 (57%), Positives = 506/683 (74%), Gaps = 30/683 (4%)
Frame = +3
Query: 2229 VFNLYLDKFVVIFIDDILVYSPNPEVHEQHLRKVLQTLREHKLYAKFSKCEFWMSQVTFL 2408
VF YLDKFVV+FIDDIL+YS + + HE+HLR VLQTL+E KLYAKFSKCEFW+ QV+FL
Sbjct: 353 VFMPYLDKFVVVFIDDILIYSKDEKEHEEHLRIVLQTLKEKKLYAKFSKCEFWLKQVSFL 412
Query: 2409 GHVITQEGISVDPAKVEAVTYWTQPKTPTEVRSFLGMAGYYRRFIKDFSRIAGPLTQLTR 2588
GHVI+ +GI VDPAK+EAV+ W +P T TE+RSFLG+AGYYR+F++DFS+IA PLT+LT+
Sbjct: 413 GHVISGDGIQVDPAKIEAVSKWPRPTTVTEIRSFLGLAGYYRKFVQDFSKIATPLTRLTQ 472
Query: 2589 KATKFEWTEKCERSFQELKNRLTSAPVLTLLDPNKEFSLYTDASGEGLGAVLMQDRKVVA 2768
K KFEW+++CE +FQ LK++LT APVL L + + +YTDASG+GLG VLMQ KV+A
Sbjct: 473 KNIKFEWSKECEEAFQTLKDKLTVAPVLALPEVFDNYDVYTDASGQGLGCVLMQAGKVIA 532
Query: 2769 YISRKLKDHERNYPTHDLELAAIVFALKKWRHYLYRAKYEIFTDHKSLKYLFSQKDLNMR 2948
Y SR+LK HE+NYPTHDLELAA+VFALK+WRHYLY K IFTDHKSLK+ F+Q++LNMR
Sbjct: 533 YASRQLKVHEKNYPTHDLELAAVVFALKQWRHYLYGVKARIFTDHKSLKFFFTQENLNMR 592
Query: 2949 QRRWMELLEEYRCPINYHPGKANVVADALSRKA------------KISSLSLT------- 3071
QRRW+E +++Y I YHPGKANVVADALSR+ ++ SL +
Sbjct: 593 QRRWLEFVKDYDLDIQYHPGKANVVADALSRRPVNAITTLQEVIHQLDSLQIQVVEREGE 652
Query: 3072 ----------STLQEDIRSAQKSNKEFQEFKNRVKAKGLEDFRTLEADGSLYFRNRLCVP 3221
S L +DIR+ Q + + K + K ++ L+ +G L++ +RLCVP
Sbjct: 653 AQCFAPLMARSELLDDIRAKQDEDPVLVDLKRVAREKPTVGYQ-LDKNGHLWYGDRLCVP 711
Query: 3222 NDTELKRKILEEAHRSKYSMHPGENKMYKDLKQKFWWNGMKREIAEYVAACLTCQRVKAE 3401
+ L++++++EAH+ +++HPG KMY+DLK+++WW GMK IAE+VA C TCQRVKAE
Sbjct: 712 DVDGLRQQVMDEAHKIAFAVHPGSTKMYRDLKERYWWLGMKLNIAEFVAKCDTCQRVKAE 771
Query: 3402 HQKSAGLLQPLPFPEWKWDHVTMDFVTGLPRTKGYKDAIWVIVDRLTKVAHFIAINISYP 3581
H++ GLL+PL PEWKW+++TMDF+TGLPRTK D IWVIVDRLTK AHF+ + P
Sbjct: 772 HRRPGGLLKPLEVPEWKWENITMDFITGLPRTKSGHDMIWVIVDRLTKSAHFLPCKVDMP 831
Query: 3582 LDKLTQIYVDEIVRLHGVPVDIVSDRDPRFASMFWPKFQAAMGTNLSYSTTAHPQTDGQS 3761
+ K TQ+Y+D IVRLHGVP+ IVSDRD RF S FW Q A T ST HPQTDGQS
Sbjct: 832 IKKFTQLYLDNIVRLHGVPLSIVSDRDSRFISHFWKGLQKAFETKTDLSTAFHPQTDGQS 891
Query: 3762 ERTIQTLEDMLRACALDFGNKWVDNLAFAEFAYNNSYHSSIGMAPFEALYGRRCRTPLYW 3941
ERTIQTLEDMLRAC L+ G W D L+ AEFAYNNSYH+S+GM PFEALYGR+CRTPLYW
Sbjct: 892 ERTIQTLEDMLRACVLEVGGSWDDFLSVAEFAYNNSYHASLGMPPFEALYGRKCRTPLYW 951
Query: 3942 DEVGVRSHWRQRNLMPEL-EEMQKQVKIIQDRLQTAKSRQKSYADNRRRDLEFNVRDRVF 4118
DEVG + + PEL E+ +++V++I+ L+ A+ RQKS+AD RRR LEF V DRV+
Sbjct: 952 DEVGEKQY-----TGPELVEQAKEKVELIRKNLKAAQDRQKSWADIRRRPLEFAVGDRVY 1006
Query: 4119 LKLTPHRGKLRYPRRGKFKSPTY 4187
L+ +P +G R+ ++GK SP Y
Sbjct: 1007 LRASPMKGVKRFGQKGKL-SPRY 1028
Score = 308 bits (790), Expect(3) = 0.0
Identities = 162/338 (47%), Positives = 217/338 (64%), Gaps = 4/338 (1%)
Frame = +2
Query: 1223 GMIKIFSQLARVLIDPGATHSFVSLHFIKHTPIPPVNMHYQLIVSTPMG-VNKITEVKYP 1399
G I I + L D GA+ +FVS + +P + L ++TP+G V K+ +V P
Sbjct: 14 GTIIIDNLAVSALFDTGASGTFVSSKIARKLNLPLQELEKPLSITTPLGRVTKVAQV-LP 72
Query: 1400 DCDICVENVVLSGDLIALPLEGYDVILGMDWLSKHYAQLDCRRKLVKFSRPSMPILVFQG 1579
D+ V DL L +DVILGMDWLSK++ +DCR K V F P FQG
Sbjct: 73 QVDVRVGAYRCKSDLTVLDFTNFDVILGMDWLSKNFVHVDCRGKKVIFRVPGKSDKTFQG 132
Query: 1580 ---KRTKRENPFLSAMKARKLLWKGCQGYLVYLLNKPKEEVKLDIVPVVRELRDVFPEEL 1750
K +K++ P +SA++A K L KGC+GY++Y ++ K KL+ +V++ +VFP+EL
Sbjct: 133 NVYKASKKKYPIISAVRAMKALQKGCEGYVLYAMDTEKHTPKLEETSIVKDFPEVFPDEL 192
Query: 1751 TTLPLDREVEFGIELVPDAKPISRTPYRMAXXXXXXXXXXXXXXXXXGYIRPSTSPWGAP 1930
DR++EF I+L+P A P ++ PYRMA I+PSTSPWGAP
Sbjct: 193 PGNMPDRDIEFEIQLIPGAAPTAKAPYRMAPAELKELKIQLKDMLERNVIQPSTSPWGAP 252
Query: 1931 VLFVKKKDGTLRMCIDYRGLNNVTVKNKYLLPLIDELFDQLRGAGYFSKLDLR*GYYQVR 2110
VLFVKKKDG+LRMCIDYR LNN+T+KNKY LP ID+LF+QL+G FSK+DLR GY+Q++
Sbjct: 253 VLFVKKKDGSLRMCIDYRALNNLTIKNKYPLPRIDDLFNQLQGKKVFSKIDLRSGYHQLK 312
Query: 2111 IREKDIPMTAFNTRYGHYEFVVMPFELTNAPATFMDLI 2224
I+ D P TAF+TRYGHYEF+VMPF LTNAP+ FMDL+
Sbjct: 313 IKVADRPKTAFSTRYGHYEFLVMPFGLTNAPSAFMDLM 350
Score = 108 bits (269), Expect(3) = 0.0
Identities = 54/113 (47%), Positives = 74/113 (65%)
Frame = +1
Query: 4171 LSPRHIGPFGIIDRIGKVAYRLALPNERIGIHDVFHVSQLKKYHPAPDHVLNDDQLKLQV 4350
LSPR++GPF II+RIGK+AYRL LP +H+VFHVS LKK + D + LQ
Sbjct: 1024 LSPRYVGPFDIIERIGKLAYRLRLPESMSRVHNVFHVSMLKKCLSSTDVESQFNPEMLQD 1083
Query: 4351 DLSYEERPTEIIERSVKELRGRQIPMCKVIWKHHGIEEATWETEEYLKKKYPE 4509
+LSY E+P +I++R K ++ R IP+ V W +H EATWE EE + ++PE
Sbjct: 1084 NLSYIEKPVKILDRKEKIVKRRIIPLVLVQWSNHSPSEATWEEEEVIADEFPE 1136
>dbj|BAH80026.1| putative retrotransposon protein [Oryza sativa Indica Group]
Length = 1666
Score = 798 bits (2061), Expect(3) = 0.0
Identities = 393/651 (60%), Positives = 488/651 (74%), Gaps = 4/651 (0%)
Frame = +3
Query: 2229 VFNLYLDKFVVIFIDDILVYSPNPEVHEQHLRKVLQTLREHKLYAKFSKCEFWMSQVTFL 2408
VF YLDKFVV+FIDDIL+YS E HE+HLR L+ LREH+LYAKFSKCEFW+S+V FL
Sbjct: 897 VFMEYLDKFVVVFIDDILIYSKTKEEHEEHLRLALEKLREHQLYAKFSKCEFWLSEVKFL 956
Query: 2409 GHVITQEGISVDPAKVEAVTYWTQPKTPTEVRSFLGMAGYYRRFIKDFSRIAGPLTQLTR 2588
GHVI+ G++VDP+ +E+V W QPKT +E+RSFLG+AGYYRRFI++FS+IA P+T+L +
Sbjct: 957 GHVISSGGVAVDPSNLESVLSWKQPKTVSEIRSFLGLAGYYRRFIENFSKIARPMTRLLQ 1016
Query: 2589 KATKFEWTEKCERSFQELKNRLTSAPVLTLLDPNKEFSLYTDASGEGLGAVLMQDRKVVA 2768
K K++WTE CE+SFQELK RL +APVL L D K F +Y DAS GLG VLMQ+ KVVA
Sbjct: 1017 KDVKYKWTESCEQSFQELKKRLVTAPVLILPDARKGFQVYCDASRHGLGCVLMQEGKVVA 1076
Query: 2769 YISRKLKDHERNYPTHDLELAAIVFALKKWRHYLYRAKYEIFTDHKSLKYLFSQKDLNMR 2948
Y SR+L HE NYPTHDLELAA+V ALK WRHYLY + EI+TDHKSLKY+F+Q DLNMR
Sbjct: 1077 YASRQLSPHENNYPTHDLELAAVVHALKIWRHYLYGNRTEIYTDHKSLKYIFTQPDLNMR 1136
Query: 2949 QRRWMELLEEYRCPINYHPGKANVVADALSRKAKIS-SLSLTSTLQEDIRSAQKSNKEFQ 3125
QRRW+EL+++Y I+YHPGKANVVADALSRK+ + S TL + IR AQ ++ + Q
Sbjct: 1137 QRRWLELIKDYDMEIHYHPGKANVVADALSRKSYCNMSEDAKPTLFDQIREAQVNDPDIQ 1196
Query: 3126 EFK---NRVKAKGLEDFRTLEADGSLYFRNRLCVPNDTELKRKILEEAHRSKYSMHPGEN 3296
E K R KA G + + G+++ R+CVP + ELK I++EAH + YS+HPG
Sbjct: 1197 EIKKNMRRGKAIGFVE----DEQGTVWLGERICVPENKELKDTIMKEAHETLYSIHPGST 1252
Query: 3297 KMYKDLKQKFWWNGMKREIAEYVAACLTCQRVKAEHQKSAGLLQPLPFPEWKWDHVTMDF 3476
KMY+DLKQ+FWW M+REIAEYVA C CQRVKAEHQK AGLLQPL PEWKW+ + MDF
Sbjct: 1253 KMYQDLKQQFWWASMRREIAEYVALCDVCQRVKAEHQKPAGLLQPLKIPEWKWEEIGMDF 1312
Query: 3477 VTGLPRTKGYKDAIWVIVDRLTKVAHFIAINISYPLDKLTQIYVDEIVRLHGVPVDIVSD 3656
+TGLPRT D+IWV+VDRLTKVAHFI + +Y KL ++Y+ +V LHGVP IVSD
Sbjct: 1313 ITGLPRTSAGHDSIWVVVDRLTKVAHFIPVKTTYTGHKLAELYMARVVCLHGVPKKIVSD 1372
Query: 3657 RDPRFASMFWPKFQAAMGTNLSYSTTAHPQTDGQSERTIQTLEDMLRACALDFGNKWVDN 3836
R +F S FW K Q+ +GT L++ST HPQTDGQ+ER Q LEDMLRAC LDFG W N
Sbjct: 1373 RGSQFTSKFWQKLQSELGTRLNFSTAYHPQTDGQTERVNQILEDMLRACVLDFGGSWDKN 1432
Query: 3837 LAFAEFAYNNSYHSSIGMAPFEALYGRRCRTPLYWDEVGVRSHWRQRNLMPELEEMQKQV 4016
L +AEF+YNNSY +S+ M+P EALYGR+CRTPL WD+ G R + L E +++V
Sbjct: 1433 LPYAEFSYNNSYQASLQMSPNEALYGRKCRTPLLWDQTGERQVFG----TDILREAEEKV 1488
Query: 4017 KIIQDRLQTAKSRQKSYADNRRRDLEFNVRDRVFLKLTPHRGKLRYPRRGK 4169
KIIQ+RL+ A+S QKSYADNRRRDL F D V+L++TP RG R+ +GK
Sbjct: 1489 KIIQERLRVAQSCQKSYADNRRRDLVFEEGDYVYLRVTPLRGVHRFQTKGK 1539
Score = 287 bits (735), Expect(3) = 0.0
Identities = 173/406 (42%), Positives = 230/406 (56%), Gaps = 1/406 (0%)
Frame = +2
Query: 1019 LCFKCGKPGHTKDQCPEMQQVTPEMSRKAGRPPIMRGTTEGRNNKPQIKAKVYALDGLPV 1198
+CF CG PGH D+CP+ ++V + A P +N P KA+V +
Sbjct: 542 ICFNCGDPGHYADKCPKPRRV-----KNASAP--------NNSNVPAPKARVNHVAAAEA 588
Query: 1199 DTEVEVVEGMIKIFSQLARVLIDPGATHSFVSLHFIKHTPIPPVNMHYQLIVSTPMGVNK 1378
+VV G + S A VL D GATHSF+S F + V++ L+V+TP N+
Sbjct: 589 QNAPDVVLGTFPVNSIPATVLFDSGATHSFLSKSFASKHGMEVVSLGRPLLVNTPG--NQ 646
Query: 1379 ITEVKY-PDCDICVENVVLSGDLIALPLEGYDVILGMDWLSKHYAQLDCRRKLVKFSRPS 1555
+ +Y P I +E V LI L + DVILGMDWLS+H +DC + V + +
Sbjct: 647 VFSTQYCPSVTIEIEEVPFPSSLILLESKDLDVILGMDWLSRHRGVIDCANRKVSLTNSN 706
Query: 1556 MPILVFQGKRTKRENPFLSAMKARKLLWKGCQGYLVYLLNKPKEEVKLDIVPVVRELRDV 1735
+ F F S+ K+ ++ LN +V L +P+V++ DV
Sbjct: 707 GETVSF----------FASSPKSHGVV-----------LN----QVALQEIPIVQDYPDV 741
Query: 1736 FPEELTTLPLDREVEFGIELVPDAKPISRTPYRMAXXXXXXXXXXXXXXXXXGYIRPSTS 1915
FPE+L +P R++EF I+LVP PI + PYRMA GYIRPSTS
Sbjct: 742 FPEDLPGMPPKRDIEFRIDLVPGTNPIHKRPYRMAANELAEK----------GYIRPSTS 791
Query: 1916 PWGAPVLFVKKKDGTLRMCIDYRGLNNVTVKNKYLLPLIDELFDQLRGAGYFSKLDLR*G 2095
PWGAPV+FV+KKD T RM +DYR LN VT+KNKY LP ID+LFDQL GA FSK+DLR G
Sbjct: 792 PWGAPVIFVEKKDHTQRMFVDYRALNEVTIKNKYPLPRIDDLFDQLEGATVFSKIDLRSG 851
Query: 2096 YYQVRIREKDIPMTAFNTRYGHYEFVVMPFELTNAPATFMDLIHSL 2233
Y+Q+RIRE+DIP TAF TRYG +E VM F LTNAPA FM+L++ +
Sbjct: 852 YHQLRIREEDIPKTAFTTRYGLFECTVMSFGLTNAPAFFMNLMNKV 897
Score = 119 bits (297), Expect(3) = 0.0
Identities = 57/114 (50%), Positives = 75/114 (65%)
Frame = +1
Query: 4171 LSPRHIGPFGIIDRIGKVAYRLALPNERIGIHDVFHVSQLKKYHPAPDHVLNDDQLKLQV 4350
L+PR +GPF I+ R G+VAY+L LP GIHDVFH+SQLKK P + D+++LQ
Sbjct: 1540 LAPRFVGPFKIVSRRGEVAYQLELPPSMAGIHDVFHMSQLKKCLRVPTEEADPDRIELQE 1599
Query: 4351 DLSYEERPTEIIERSVKELRGRQIPMCKVIWKHHGIEEATWETEEYLKKKYPEL 4512
DL+Y E+P I+E S + R R I CKV W +H EE+TWE E+ LK +P L
Sbjct: 1600 DLTYVEKPVRILEVSERNTRNRVIRFCKVQWSNHSEEESTWEREDELKSAHPHL 1653
Score = 94.4 bits (233), Expect = 5e-16
Identities = 65/229 (28%), Positives = 106/229 (46%), Gaps = 6/229 (2%)
Frame = +1
Query: 121 SQNRQSEPTREATPRPEQATHKVIENFMIKMTELLETSMATRRNEQV------PVTGADE 282
+ N + EPT + + + T+L+ + +N+Q P
Sbjct: 239 ANNNEGEPT--------------LAQILAQQTQLINLLVQQAQNQQANNQNQNPPPPPQN 284
Query: 283 ALERFLKFRPLEFYGDVEQEIKAGLFLEQLNDIYDTLKYEDALRVTFAAFRLRGMAMDWW 462
L FL+ RP F ++AG +L + D ++ + +V+FA+ +L G A +WW
Sbjct: 285 KLADFLRVRPPTF-SSTTNPVEAGDWLHAVEKKLDLIQCTEQEKVSFASHQLHGPAAEWW 343
Query: 463 LRASEARTLKNQPWTCNDFQEEFKKEYIPRWVREQREDEFQQLRQGNLTVAQYTAKFNRL 642
+ R + +P T +F FKK +IP V ++ EF+ L QG+ +V +Y FNRL
Sbjct: 344 DHFRQGR-VGGEPVTWQEFTAAFKKTHIPSGVVALKKREFRALNQGSRSVTEYLHDFNRL 402
Query: 643 AKYCLRLIDTDENKTRQFVKGLRVELQRALAPLPPMGFAAAVEAATRTE 789
A+Y + TDE + +F++GL EL AL F V+ A R E
Sbjct: 403 ARYAPEDVRTDEERQEKFLEGLNDELSYALMSTDFRDFQQLVDKAIRQE 451
>gb|ABA97812.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1702
Score = 793 bits (2049), Expect(3) = 0.0
Identities = 389/676 (57%), Positives = 491/676 (72%), Gaps = 29/676 (4%)
Frame = +3
Query: 2229 VFNLYLDKFVVIFIDDILVYSPNPEVHEQHLRKVLQTLREHKLYAKFSKCEFWMSQVTFL 2408
VF YLDKFVV+FIDDIL+YS E HE+HLR L+ LREH+LYAKFSKCEFW+S+V FL
Sbjct: 905 VFMEYLDKFVVVFIDDILIYSKTKEEHEEHLRLALEKLREHQLYAKFSKCEFWLSEVKFL 964
Query: 2409 GHVITQEGISVDPAKVEAVTYWTQPKTPTEVRSFLGMAGYYRRFIKDFSRIAGPLTQLTR 2588
GHVI+ G++VDP+ VE+V W QPKT +E+RSFLG+A YYRRFI++FS+IA P+T+L +
Sbjct: 965 GHVISSGGVAVDPSNVESVLSWKQPKTVSEIRSFLGLARYYRRFIENFSKIARPMTRLLQ 1024
Query: 2589 KATKFEWTEKCERSFQELKNRLTSAPVLTLLDPNKEFSLYTDASGEGLGAVLMQDRKVVA 2768
K K++WTE CERSFQELK RL +APVL L + K F +Y DAS GLG VLMQ+ KVVA
Sbjct: 1025 KEVKYKWTEDCERSFQELKKRLVTAPVLILPNSRKGFQVYCDASRHGLGCVLMQEGKVVA 1084
Query: 2769 YISRKLKDHERNYPTHDLELAAIVFALKKWRHYLYRAKYEIFTDHKSLKYLFSQKDLNMR 2948
Y SR+L+ HE NYPTHDLELAA+V ALK WRHYL+ + E++TDHKSLKY+F+Q DLNMR
Sbjct: 1085 YASRQLRPHENNYPTHDLELAAVVHALKIWRHYLFGNRTEMYTDHKSLKYIFTQPDLNMR 1144
Query: 2949 QRRWMELLEEYRCPINYHPGKANVVADALSRKAK-------------------------- 3050
QRRW+EL+++Y I+YHPGKANVVADALSRK+
Sbjct: 1145 QRRWLELIKDYDMEIHYHPGKANVVADALSRKSYCNMSEGRRLPWKLCQEFEKLNLGIVS 1204
Query: 3051 ---ISSLSLTSTLQEDIRSAQKSNKEFQEFKNRVKAKGLEDFRTLEADGSLYFRNRLCVP 3221
+++L TL + +R AQ ++ + QE K ++ +G + G+++ R+CVP
Sbjct: 1205 KGFVATLEAQPTLFDQVREAQVNDPDIQEIKKNMR-RGKAIGYVEDEQGTVWLGERICVP 1263
Query: 3222 NDTELKRKILEEAHRSKYSMHPGENKMYKDLKQKFWWNGMKREIAEYVAACLTCQRVKAE 3401
+ ELK I++EAH + YS+HPG KMY+DLKQ+FWW M+REIAEYVA C CQRVKAE
Sbjct: 1264 ENKELKDTIMKEAHETLYSIHPGSTKMYQDLKQQFWWASMRREIAEYVALCDVCQRVKAE 1323
Query: 3402 HQKSAGLLQPLPFPEWKWDHVTMDFVTGLPRTKGYKDAIWVIVDRLTKVAHFIAINISYP 3581
HQK AGLLQPL PEWKW+ + MDF+TGLPRT D+IWV+VDRLTKVAHFI + +Y
Sbjct: 1324 HQKPAGLLQPLKIPEWKWEEIGMDFITGLPRTSAGHDSIWVVVDRLTKVAHFIPVKTTYT 1383
Query: 3582 LDKLTQIYVDEIVRLHGVPVDIVSDRDPRFASMFWPKFQAAMGTNLSYSTTAHPQTDGQS 3761
+KL ++Y+ +V LHGVP IVSDR +F S FW K Q MGT L++ST HPQTDGQ+
Sbjct: 1384 GNKLAELYMARVVCLHGVPKKIVSDRGSQFTSKFWQKLQVEMGTRLNFSTAYHPQTDGQT 1443
Query: 3762 ERTIQTLEDMLRACALDFGNKWVDNLAFAEFAYNNSYHSSIGMAPFEALYGRRCRTPLYW 3941
ER Q LEDMLRAC LDFG W NL +AEF+YNNSY +S+ MAP+EALYGR+CRTP+ W
Sbjct: 1444 ERVNQILEDMLRACVLDFGGSWDKNLPYAEFSYNNSYQASLQMAPYEALYGRKCRTPILW 1503
Query: 3942 DEVGVRSHWRQRNLMPELEEMQKQVKIIQDRLQTAKSRQKSYADNRRRDLEFNVRDRVFL 4121
D+ G R + L E +++VKIIQ+RL+ A+SRQKSYADNRRRDL F D V+L
Sbjct: 1504 DQTGERQVFG----TDILREAEEKVKIIQERLRVAQSRQKSYADNRRRDLAFEEGDYVYL 1559
Query: 4122 KLTPHRGKLRYPRRGK 4169
++TP RG R+ +GK
Sbjct: 1560 RVTPLRGVHRFQTKGK 1575
Score = 293 bits (749), Expect(3) = 0.0
Identities = 175/406 (43%), Positives = 232/406 (57%), Gaps = 1/406 (0%)
Frame = +2
Query: 1019 LCFKCGKPGHTKDQCPEMQQVTPEMSRKAGRPPIMRGTTEGRNNKPQIKAKVYALDGLPV 1198
+CF CG PGH D+CP+ ++V + A P +N P KA+V +
Sbjct: 540 VCFNCGDPGHYADKCPKPRRV-----KNAPAP--------NNSNVPVPKARVNHVVAAEA 586
Query: 1199 DTEVEVVEGMIKIFSQLARVLIDPGATHSFVSLHFIKHTPIPPVNMHYQLIVSTPMGVNK 1378
VV G + S A VL D GATHSF+S F + + V++ L+V+TP N+
Sbjct: 587 QNAPYVVLGTFPVNSIPATVLFDSGATHSFLSKSFASNHGMEVVSLGRPLLVNTPG--NQ 644
Query: 1379 ITEVKY-PDCDICVENVVLSGDLIALPLEGYDVILGMDWLSKHYAQLDCRRKLVKFSRPS 1555
+ +Y P I +E V LI L + DVILGMDWLS+H +DC + V + +
Sbjct: 645 VFSTQYCPSATIEIEEVPFPSSLILLESKDLDVILGMDWLSRHRGVIDCVNRKVTLTSSN 704
Query: 1556 MPILVFQGKRTKRENPFLSAMKARKLLWKGCQGYLVYLLNKPKEEVKLDIVPVVRELRDV 1735
+ F F+S+ K+ + LN +V L +P+V++ DV
Sbjct: 705 GETVSF----------FVSSPKSHGVN-----------LN----QVALQEIPIVQDYPDV 739
Query: 1736 FPEELTTLPLDREVEFGIELVPDAKPISRTPYRMAXXXXXXXXXXXXXXXXXGYIRPSTS 1915
FPE+L LP R++EF I+LVP PI + PYRMA GYIRPSTS
Sbjct: 740 FPEDLPGLPPKRDIEFRIDLVPGTNPIHKRPYRMAANELAEVKRQVDDLLQKGYIRPSTS 799
Query: 1916 PWGAPVLFVKKKDGTLRMCIDYRGLNNVTVKNKYLLPLIDELFDQLRGAGYFSKLDLR*G 2095
PWGAPV+FV+KKD T RMC+DYR LN VT+KNKY LP ID+LFDQL+GA FSK+DLR G
Sbjct: 800 PWGAPVIFVEKKDHTQRMCVDYRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSG 859
Query: 2096 YYQVRIREKDIPMTAFNTRYGHYEFVVMPFELTNAPATFMDLIHSL 2233
Y+Q+RIRE+DIP TAF TRYG +E VM F LTNAPA FM+L++ +
Sbjct: 860 YHQLRIREEDIPKTAFTTRYGLFECTVMSFGLTNAPAFFMNLMNKV 905
Score = 121 bits (303), Expect(3) = 0.0
Identities = 59/114 (51%), Positives = 75/114 (65%)
Frame = +1
Query: 4171 LSPRHIGPFGIIDRIGKVAYRLALPNERIGIHDVFHVSQLKKYHPAPDHVLNDDQLKLQV 4350
L+PR +GPF I+ R G+VAY+L LP GIHDVFHVSQLKK P + D+++LQ
Sbjct: 1576 LAPRFVGPFKIVSRRGEVAYQLELPPSMAGIHDVFHVSQLKKCLRVPTEEADPDRIELQE 1635
Query: 4351 DLSYEERPTEIIERSVKELRGRQIPMCKVIWKHHGIEEATWETEEYLKKKYPEL 4512
DL+Y E+P I+E S + R R I CKV W +H EEATWE E+ LK +P L
Sbjct: 1636 DLTYVEKPVRILEVSERNTRNRVIRFCKVQWSNHSEEEATWEREDELKSAHPHL 1689
Score = 94.7 bits (234), Expect = 4e-16
Identities = 61/206 (29%), Positives = 100/206 (48%), Gaps = 6/206 (2%)
Frame = +1
Query: 190 IENFMIKMTELLETSMATRRNEQV------PVTGADEALERFLKFRPLEFYGDVEQEIKA 351
+ + + T+L+ + +N+Q P L FL+ RP F ++A
Sbjct: 246 LAQILAQQTQLINLLVQQAQNQQANNQNQNPPPPPQNKLADFLRVRPPTF-SSTTNPVEA 304
Query: 352 GLFLEQLNDIYDTLKYEDALRVTFAAFRLRGMAMDWWLRASEARTLKNQPWTCNDFQEEF 531
G +L + D ++ + +V+FA+ +L G A +WW + R + +P T +F F
Sbjct: 305 GDWLHAVEKKLDLIQCTEQEKVSFASHQLHGPAAEWWDHFRQGRA-EGEPITWQEFTAAF 363
Query: 532 KKEYIPRWVREQREDEFQQLRQGNLTVAQYTAKFNRLAKYCLRLIDTDENKTRQFVKGLR 711
KK +IP V ++ EF+ L QG+ +V +Y FNRLA+Y + TDE + +F++GL
Sbjct: 364 KKTHIPAGVVALKKREFRALNQGSRSVTEYLHDFNRLARYAPEDVRTDEERQEKFLEGLN 423
Query: 712 VELQRALAPLPPMGFAAAVEAATRTE 789
EL AL F V+ A R E
Sbjct: 424 DELSYALMSTDFRDFQQLVDKAIRQE 449
>gb|AAO73263.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
gi|108709213|gb|ABF97008.1| retrotransposon protein,
putative, Ty3-gypsy subclass [Oryza sativa Japonica
Group]
Length = 1652
Score = 792 bits (2046), Expect(3) = 0.0
Identities = 397/680 (58%), Positives = 494/680 (72%), Gaps = 33/680 (4%)
Frame = +3
Query: 2229 VFNLYLDKFVVIFIDDILVYSPNPEVHEQHLRKVLQTLREHKLYAKFSKCEFWMSQVTFL 2408
VF YLDKFVV+FIDDIL+YS E HE+HLR L LREH+LYAKFSKCEFW+ +V FL
Sbjct: 855 VFMEYLDKFVVVFIDDILIYSRTKEEHEEHLRLALDKLREHQLYAKFSKCEFWLFEVKFL 914
Query: 2409 GHVITQEGISVDPAKVEAVTYWTQPKTPTEVRSFLGMAGYYRRFIKDFSRIAGPLTQLTR 2588
GHVI+ G++VDP+ VE+VT W QPKT +E+RSFLG+AGYY+RFI++FS+IA P+T+L +
Sbjct: 915 GHVISAGGVAVDPSNVESVTNWKQPKTVSEIRSFLGLAGYYQRFIENFSKIAKPMTRLLQ 974
Query: 2589 KATKFEWTEKCERSFQELKNRLTSAPVLTLLDPNKEFSLYTDASGEGLGAVLMQDRKVVA 2768
K K++W+E+CE+SFQELKNRL SAP+L L DP K F +Y DAS GLG VLMQD KVVA
Sbjct: 975 KDVKYKWSEECEQSFQELKNRLISAPILILPDPKKGFQVYCDASKFGLGCVLMQDGKVVA 1034
Query: 2769 YISRKLKDHERNYPTHDLELAAIVFALKKWRHYLYRAKYEIFTDHKSLKYLFSQKDLNMR 2948
Y SR+L+ HE+NY THDLELAA+V ALK WRHYL+ + E++TDHKSLKY+F+Q DLNMR
Sbjct: 1035 YASRQLRPHEKNYTTHDLELAAVVHALKIWRHYLFGTRTEVYTDHKSLKYIFTQPDLNMR 1094
Query: 2949 QRRWMELLEEYRCPINYHPGKANVVADALSRKAK-------------------------- 3050
Q+RW+EL+++Y I+YHPGKANVVADALSRK
Sbjct: 1095 QQRWLELIKDYDMGIHYHPGKANVVADALSRKGYCNATEGRQLPLELCKEFEKLNLGIVS 1154
Query: 3051 ---ISSLSLTSTLQEDIRSAQKSNKEFQEFK---NRVKAKG-LEDFRTLEADGSLYFRNR 3209
I++L TL + +R AQ ++ + QE K R KA G LED G+++ R
Sbjct: 1155 RGFIATLEAKPTLIDQVREAQINDPDIQEIKKNMRRGKAIGFLED-----EQGTVWLGER 1209
Query: 3210 LCVPNDTELKRKILEEAHRSKYSMHPGENKMYKDLKQKFWWNGMKREIAEYVAACLTCQR 3389
+CVP++ +LK IL+EAH + YS+HPG KMY+DLK+ FWW MKREIAEYVA C CQR
Sbjct: 1210 ICVPDNKDLKDAILKEAHDTLYSIHPGSTKMYQDLKEGFWWASMKREIAEYVAVCDVCQR 1269
Query: 3390 VKAEHQKSAGLLQPLPFPEWKWDHVTMDFVTGLPRTKGYKDAIWVIVDRLTKVAHFIAIN 3569
VKAEHQK AGLLQPL PEWKW+ + MDF+TGLPRT D+IWVIVDRLTKVAHFI +
Sbjct: 1270 VKAEHQKPAGLLQPLKIPEWKWEEIGMDFITGLPRTSSGHDSIWVIVDRLTKVAHFIPVK 1329
Query: 3570 ISYPLDKLTQIYVDEIVRLHGVPVDIVSDRDPRFASMFWPKFQAAMGTNLSYSTTAHPQT 3749
+Y +L ++Y+ IV LHGVP IVSDR +F S FW K Q MG+ L++ST HPQT
Sbjct: 1330 TTYSGSRLAELYMARIVCLHGVPKKIVSDRGSQFTSNFWKKLQEEMGSKLNFSTAYHPQT 1389
Query: 3750 DGQSERTIQTLEDMLRACALDFGNKWVDNLAFAEFAYNNSYHSSIGMAPFEALYGRRCRT 3929
DGQ+ER Q LEDMLRACALDFG W NL +AEF+YNNSY +S+ MAP+EALYGR+CRT
Sbjct: 1390 DGQTERVNQILEDMLRACALDFGGSWDKNLPYAEFSYNNSYQASLQMAPYEALYGRKCRT 1449
Query: 3930 PLYWDEVGVRSHWRQRNLMPELEEMQKQVKIIQDRLQTAKSRQKSYADNRRRDLEFNVRD 4109
PL WD+ G R + L E +++VKIIQ+RL+ A+SR KSYADNRRRDL F D
Sbjct: 1450 PLLWDQTGERQVFG----TDILREAEEKVKIIQERLRVAQSRHKSYADNRRRDLSFGEGD 1505
Query: 4110 RVFLKLTPHRGKLRYPRRGK 4169
V+L++TP RG R+ +GK
Sbjct: 1506 YVYLRVTPFRGVHRFHTKGK 1525
Score = 273 bits (698), Expect(3) = 0.0
Identities = 160/401 (39%), Positives = 224/401 (55%), Gaps = 1/401 (0%)
Frame = +2
Query: 1034 GKPGHTKDQCPEMQQVTPEMSRKAGRPPIMRGTTEGRNNKPQIKAKVYALDGLPVDTEVE 1213
G PGH D+CP+ ++V T+ + P KA+V + +
Sbjct: 495 GDPGHYADKCPKPRRVKVV-------------PTQSNSTAPASKARVNHVAAAEAQDAPD 541
Query: 1214 VVEGMIKIFSQLARVLIDPGATHSFVSLHFIKHTPIPPVNMHYQLIVSTPMGVNKITEVK 1393
V+ GM + A VL D GATHSF+S+ F + + ++ ++VSTP ++ +
Sbjct: 542 VILGMFLVNLVPATVLFDSGATHSFLSMSFAGNHGMEVEDLRRPMMVSTPSN-QALSLQR 600
Query: 1394 YPDCDICVENVVLSGDLIALPLEGYDVILGMDWLSKHYAQLDC-RRKLVKFSRPSMPILV 1570
P I ++ V +LI L + DVILGMDWL+++ +DC RK+ S + V
Sbjct: 601 SPSVRIEIQGVPFLANLILLESKDLDVILGMDWLARYKGVIDCANRKVTLTSNDGRVVTV 660
Query: 1571 FQGKRTKRENPFLSAMKARKLLWKGCQGYLVYLLNKPKEEVKLDIVPVVRELRDVFPEEL 1750
+ LS+ R L ++ L+ + +VRE DVFP++L
Sbjct: 661 YA----------LSSESLRSRL----------------NQITLEEISIVREYPDVFPDDL 694
Query: 1751 TTLPLDREVEFGIELVPDAKPISRTPYRMAXXXXXXXXXXXXXXXXXGYIRPSTSPWGAP 1930
+P R++EF I+LVP PI + PYRMA GYIRPS+SPWGAP
Sbjct: 695 PGMPPKRDIEFRIDLVPGTTPIHKRPYRMAANELAEVKRQVDDLLQKGYIRPSSSPWGAP 754
Query: 1931 VLFVKKKDGTLRMCIDYRGLNNVTVKNKYLLPLIDELFDQLRGAGYFSKLDLR*GYYQVR 2110
V+FV+KKD T RMC+DYR LN+VT+KNKY LP ID+LFDQL+GA FSK+DLR GY+Q+R
Sbjct: 755 VIFVEKKDHTQRMCVDYRALNDVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLR 814
Query: 2111 IREKDIPMTAFNTRYGHYEFVVMPFELTNAPATFMDLIHSL 2233
I+E+DIP TAF TRYG +E VM F LTNAPA FM+L++ +
Sbjct: 815 IKEEDIPKTAFTTRYGLFECTVMSFGLTNAPAFFMNLMNKV 855
Score = 110 bits (275), Expect(3) = 0.0
Identities = 53/114 (46%), Positives = 72/114 (63%)
Frame = +1
Query: 4171 LSPRHIGPFGIIDRIGKVAYRLALPNERIGIHDVFHVSQLKKYHPAPDHVLNDDQLKLQV 4350
L+PR +GP+ I R G+VAY+L LP G+H+VFHVSQLKK P N +Q+++Q
Sbjct: 1526 LAPRFVGPYKIASRRGEVAYQLELPQSLAGVHNVFHVSQLKKCLRVPTEEANLEQIEVQE 1585
Query: 4351 DLSYEERPTEIIERSVKELRGRQIPMCKVIWKHHGIEEATWETEEYLKKKYPEL 4512
DL+Y E+P I+E + R I CKV W +H EE+TWE E+ LK +P L
Sbjct: 1586 DLTYIEKPIRILEIDERRTTNRVIRFCKVQWSNHSEEESTWEREDELKSAHPHL 1639
Score = 71.2 bits (173), Expect = 4e-09
Identities = 42/122 (34%), Positives = 66/122 (54%)
Frame = +1
Query: 286 LERFLKFRPLEFYGDVEQEIKAGLFLEQLNDIYDTLKYEDALRVTFAAFRLRGMAMDWWL 465
L FL+ RP + ++AG +L + D L+ D +V+FA+ +L G A +WW
Sbjct: 324 LAEFLRVRP-PIFSSTTNPVEAGDWLHVIEKKLDLLQCTDQEKVSFASHQLHGPASEWWD 382
Query: 466 RASEARTLKNQPWTCNDFQEEFKKEYIPRWVREQREDEFQQLRQGNLTVAQYTAKFNRLA 645
RT +P T +F F+K +IP V ++ EF+ L QG+ +V +Y +FNRLA
Sbjct: 383 HFRLNRTTA-EPITWLEFTAAFRKTHIPLGVVSLKKREFRSLTQGSRSVTEYLHEFNRLA 441
Query: 646 KY 651
+Y
Sbjct: 442 RY 443
>gb|ABA98372.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1800
Score = 788 bits (2036), Expect(3) = 0.0
Identities = 397/682 (58%), Positives = 494/682 (72%), Gaps = 29/682 (4%)
Frame = +3
Query: 2229 VFNLYLDKFVVIFIDDILVYSPNPEVHEQHLRKVLQTLREHKLYAKFSKCEFWMSQVTFL 2408
VF YLDKFVV+FIDDIL+YS + E H+ HLR VL LREH+LYAK SKCEFW+S+VTFL
Sbjct: 1003 VFMEYLDKFVVVFIDDILIYSQSEEDHQHHLRLVLGKLREHQLYAKLSKCEFWLSEVTFL 1062
Query: 2409 GHVITQEGISVDPAKVEAVTYWTQPKTPTEVRSFLGMAGYYRRFIKDFSRIAGPLTQLTR 2588
GHVI+ +G++VDP V AVT W QPKT T+VRSFLG+AGYYRRFI++FS+IA P+TQL +
Sbjct: 1063 GHVISAKGVAVDPETVTAVTDWKQPKTVTQVRSFLGLAGYYRRFIENFSKIARPMTQLLK 1122
Query: 2589 KATKFEWTEKCERSFQELKNRLTSAPVLTLLDPNKEFSLYTDASGEGLGAVLMQDRKVVA 2768
K KF W+ +CE++FQ LK +L S+PVL L D K+F +Y DAS +GLG VLMQD VVA
Sbjct: 1123 KEEKFVWSPQCEKAFQTLKEKLVSSPVLILPDTRKDFIVYCDASRQGLGCVLMQDGHVVA 1182
Query: 2769 YISRKLKDHERNYPTHDLELAAIVFALKKWRHYLYRAKYEIFTDHKSLKYLFSQKDLNMR 2948
Y SR+L+ HE NYPTHDLELAA+V ALK WRHYL + EI+TDHKSLKY+F+Q DLN+R
Sbjct: 1183 YASRQLRPHEGNYPTHDLELAAVVHALKIWRHYLIGNRCEIYTDHKSLKYIFTQSDLNLR 1242
Query: 2949 QRRWMELLEEYRCPINYHPGKANVVADALSRKAKISSLSLT------------------- 3071
QRRW+EL+++Y I+YHPGKANVVADALSRK ++L++
Sbjct: 1243 QRRWLELIKDYDVGIHYHPGKANVVADALSRKGHCNTLNVRGFPPELNQRMEALNLSIVG 1302
Query: 3072 ----------STLQEDIRSAQKSNKEFQEFKNRVKAKGLEDFRTLEADGSLYFRNRLCVP 3221
STL + IR AQK++ + +K F T + G+L+ NR+CVP
Sbjct: 1303 RGFLAALEAKSTLLDQIREAQKNDPDMHGLLKNMKQGKAAGF-TEDEHGTLWNGNRVCVP 1361
Query: 3222 NDTELKRKILEEAHRSKYSMHPGENKMYKDLKQKFWWNGMKREIAEYVAACLTCQRVKAE 3401
++ ELK+ IL+EAH S YS+HPG KMY DLK+K+WW MKREIAE+VA C CQRVKAE
Sbjct: 1362 DNRELKQLILQEAHESPYSIHPGSTKMYLDLKEKYWWVSMKREIAEFVALCDVCQRVKAE 1421
Query: 3402 HQKSAGLLQPLPFPEWKWDHVTMDFVTGLPRTKGYKDAIWVIVDRLTKVAHFIAINISYP 3581
HQ+ AGLLQPL PEWKWD + MDF+TGLP+T+G D+IWV+VDRLTKVA FI + +Y
Sbjct: 1422 HQRPAGLLQPLQVPEWKWDEIGMDFITGLPKTQGGYDSIWVVVDRLTKVARFIPVKTTYG 1481
Query: 3582 LDKLTQIYVDEIVRLHGVPVDIVSDRDPRFASMFWPKFQAAMGTNLSYSTTAHPQTDGQS 3761
+KL ++Y IV LHGVP IVSDR +F S FW K Q +GT L++ST HPQTDGQ+
Sbjct: 1482 GNKLAELYFARIVSLHGVPKKIVSDRGSQFTSHFWKKLQEELGTRLNFSTAYHPQTDGQT 1541
Query: 3762 ERTIQTLEDMLRACALDFGNKWVDNLAFAEFAYNNSYHSSIGMAPFEALYGRRCRTPLYW 3941
ER Q LEDMLRAC LDFG W +L +AEF+YNNSY SSI MAP+EALYGR+CRTPL W
Sbjct: 1542 ERLNQILEDMLRACVLDFGKTWDKSLPYAEFSYNNSYQSSIQMAPYEALYGRKCRTPLLW 1601
Query: 3942 DEVGVRSHWRQRNLMPELEEMQKQVKIIQDRLQTAKSRQKSYADNRRRDLEFNVRDRVFL 4121
D+VG + L E + +V+II+D L+ A+SRQKSYADNRRRDLEF V D V+L
Sbjct: 1602 DQVGESQVFG----TDILREAEAKVRIIRDNLKVAQSRQKSYADNRRRDLEFAVDDFVYL 1657
Query: 4122 KLTPHRGKLRYPRRGKFKSPTY 4187
++TP RG R+ +GK +P Y
Sbjct: 1658 RVTPLRGVHRFQTKGKL-APRY 1678
Score = 301 bits (770), Expect(3) = 0.0
Identities = 171/409 (41%), Positives = 229/409 (55%), Gaps = 3/409 (0%)
Frame = +2
Query: 1016 RLCFKCGKPGHTKDQCPEMQQVTPEMSRKAGRPPIMRGTTEGRNNKPQIKAKVYALDGLP 1195
RLCF C +PGH D+CP+ + R+ G+ P K I+ +V +
Sbjct: 635 RLCFNCFEPGHFADKCPKPR-------RQQGQAP----PHPNNGGKDVIRGRVNHVTAED 683
Query: 1196 VDTEVEVVEGMIKIFSQLARVLIDPGATHSFVSLHFIKHTPIPPVNMHYQLIVSTPMGVN 1375
V T +V+ G + S A +L D GA+HSF+S+ F+ + + L+++TP GV
Sbjct: 684 VLTTPDVIVGTFLVHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGV- 742
Query: 1376 KITEVKY--PDCDICVENVVLSGDLIALPLEGYDVILGMDWLSKHYAQLDCRRKLVKFSR 1549
KY P I ++ + DLI L + DVILGM+WL++ +DC R+ V R
Sbjct: 743 --MTAKYYSPAVPIEIQGIPFPSDLILLDTKNLDVILGMNWLAQFQGVVDCARRTVTLYR 800
Query: 1550 -PSMPILVFQGKRTKRENPFLSAMKARKLLWKGCQGYLVYLLNKPKEEVKLDIVPVVREL 1726
P P++ F + R + ++ L +P+VRE
Sbjct: 801 GPEQPVVFFAPPTSVRSSEL--------------------------HQIGLSEIPIVREF 834
Query: 1727 RDVFPEELTTLPLDREVEFGIELVPDAKPISRTPYRMAXXXXXXXXXXXXXXXXXGYIRP 1906
DVFPEEL +P RE+EF I+L P P+ + PYRMA GYIRP
Sbjct: 835 GDVFPEELPGMPPKREIEFRIDLAPGTTPLHKRPYRMAANELAEVKKQLEELKEKGYIRP 894
Query: 1907 STSPWGAPVLFVKKKDGTLRMCIDYRGLNNVTVKNKYLLPLIDELFDQLRGAGYFSKLDL 2086
STSPWGAPV+FV+KKD T RMC+DYR LN VT+KNKY LP ID+LFDQL+GA FSK+DL
Sbjct: 895 STSPWGAPVIFVEKKDKTKRMCVDYRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDL 954
Query: 2087 R*GYYQVRIREKDIPMTAFNTRYGHYEFVVMPFELTNAPATFMDLIHSL 2233
R GY+Q+RIRE+DIP TAF TRYG YEF VM F LTNAPA FM+L++ +
Sbjct: 955 RSGYHQLRIREEDIPKTAFTTRYGLYEFTVMSFGLTNAPAFFMNLMNKV 1003
Score = 113 bits (283), Expect(3) = 0.0
Identities = 54/114 (47%), Positives = 75/114 (65%)
Frame = +1
Query: 4171 LSPRHIGPFGIIDRIGKVAYRLALPNERIGIHDVFHVSQLKKYHPAPDHVLNDDQLKLQV 4350
L+PR++GPF I+ R G+VAY+L LP +HDVFHVSQLKK P + +Q+K++
Sbjct: 1674 LAPRYVGPFRIVARRGEVAYQLELPASLGNVHDVFHVSQLKKCLRVPSEQADSEQIKVRE 1733
Query: 4351 DLSYEERPTEIIERSVKELRGRQIPMCKVIWKHHGIEEATWETEEYLKKKYPEL 4512
DL+Y ERP +I++ + R I CKV W +H EEATWE E+ LK +P+L
Sbjct: 1734 DLTYVERPVKILDTMERRTRNWVIRFCKVQWSNHAEEEATWEREDELKAAHPDL 1787
Score = 73.2 bits (178), Expect = 1e-09
Identities = 59/212 (27%), Positives = 96/212 (45%), Gaps = 12/212 (5%)
Frame = +1
Query: 118 SSQNRQSEPTREATPRPEQA--THKVIENFMIK----MTELLETSMATRRNEQVPVTGAD 279
S+ N Q P P P T+ ++ + + MT L + P
Sbjct: 331 SNHNHQGNPPPPPPPPPPPPPDTNAILTQILAQQANMMTAFLHHLQNPPQQNAPPPPPQH 390
Query: 280 EALERFLKFRPLEFYGDVEQEIKAGLFLEQLNDIYDTLKYEDALRVTFAAFRLRGMAMDW 459
L FL+ RP F + A +L + DT++ D +V FAA +L+G A W
Sbjct: 391 SKLAEFLRIRPPTFSSS-NNPVDALDWLHAVGKKLDTVQCSDEEKVVFAAHQLQGPASLW 449
Query: 460 WLRASEARTLKNQPWTCNDFQEEFKKEYIPRWVREQREDEFQQLRQGNLTVAQYTAKFNR 639
W +A + QP T F F++ ++P V ++ EF++L+QGN +V +Y +FN
Sbjct: 450 WDHF-QATQPEGQPITWARFTAAFRRTHVPAGVVALKKREFRELKQGNRSVMEYLHEFNN 508
Query: 640 LAKYC-----LRLIDTDENKTRQFV-KGLRVE 717
LA+Y +RL+ D ++ V K +R+E
Sbjct: 509 LARYAPEDLSVRLVSGDYPDFQRLVDKSIRLE 540
>emb|CAH65834.1| OSIGBa0124C14.1 [Oryza sativa Indica Group]
Length = 1481
Score = 788 bits (2035), Expect(3) = 0.0
Identities = 393/679 (57%), Positives = 490/679 (72%), Gaps = 32/679 (4%)
Frame = +3
Query: 2229 VFNLYLDKFVVIFIDDILVYSPNPEVHEQHLRKVLQTLREHKLYAKFSKCEFWMSQVTFL 2408
VF YLDKFVV+FIDDIL+YS E HE+HLR L+ LREH+LYAKFSKCEFW+S+V FL
Sbjct: 684 VFMEYLDKFVVVFIDDILIYSKTKEEHEEHLRLSLEKLREHQLYAKFSKCEFWLSEVKFL 743
Query: 2409 GHVITQEGISVDPAKVEAVTYWTQPKTPTEVRSFLGMAGYYRRFIKDFSRIAGPLTQLTR 2588
GHVI+ G++VDP+ VE+V W QPKT +EVRSFLG+AGYYRRFI++FSRIA P+T+L +
Sbjct: 744 GHVISSGGVAVDPSNVESVLSWKQPKTVSEVRSFLGLAGYYRRFIENFSRIARPMTRLLQ 803
Query: 2589 KATKFEWTEKCERSFQELKNRLTSAPVLTLLDPNKEFSLYTDASGEGLGAVLMQDRKVVA 2768
K K++WTE CERSFQELK RL +APVL L D K F +Y DAS GLG +LMQ+ KVVA
Sbjct: 804 KEVKYKWTEDCERSFQELKKRLVTAPVLILPDSRKGFQVYCDASRHGLGCMLMQEGKVVA 863
Query: 2769 YISRKLKDHERNYPTHDLELAAIVFALKKWRHYLYRAKYEIFTDHKSLKYLFSQKDLNMR 2948
Y SR+L+ HE NYPTHDLELAA+V ALK WRHYL+ + E++TDHKSLKY+F+Q DLNMR
Sbjct: 864 YASRQLRPHENNYPTHDLELAAVVHALKIWRHYLFGNRTEVYTDHKSLKYIFTQPDLNMR 923
Query: 2949 QRRWMELLEEYRCPINYHPGKANVVADALSRKAK-------------------------- 3050
QRRW+EL+++Y I+YHPGKANVVADALSRK+
Sbjct: 924 QRRWLELIKDYDMEIHYHPGKANVVADALSRKSYCNMSEGRRLPWELCQEFEKLNLGIVS 983
Query: 3051 ---ISSLSLTSTLQEDIRSAQKSNKEFQEFK---NRVKAKGLEDFRTLEADGSLYFRNRL 3212
+++L TL + IR AQ ++ + QE K R KA G + + G+++ R+
Sbjct: 984 KGFVATLEAKPTLFDQIREAQVNDPDIQEIKKNMRRGKAIGFVE----DEQGTVWLGERI 1039
Query: 3213 CVPNDTELKRKILEEAHRSKYSMHPGENKMYKDLKQKFWWNGMKREIAEYVAACLTCQRV 3392
CVP + ELK I++EAH + YS+HPG KMY+DLKQ+FWW M+REIAEYVA C CQRV
Sbjct: 1040 CVPENKELKDTIMKEAHETLYSIHPGSTKMYQDLKQQFWWASMRREIAEYVALCDVCQRV 1099
Query: 3393 KAEHQKSAGLLQPLPFPEWKWDHVTMDFVTGLPRTKGYKDAIWVIVDRLTKVAHFIAINI 3572
KAEHQK AGLLQPL PEWKW+ + MDF+TGLPRT D+IWV+VDRLTKVAHFI +
Sbjct: 1100 KAEHQKPAGLLQPLRIPEWKWEEIGMDFITGLPRTSAGHDSIWVVVDRLTKVAHFIPVKT 1159
Query: 3573 SYPLDKLTQIYVDEIVRLHGVPVDIVSDRDPRFASMFWPKFQAAMGTNLSYSTTAHPQTD 3752
+Y K ++Y+ +V LHGVP IVSDR +F S FW K Q+ +GT L++ST HPQTD
Sbjct: 1160 TYTGHKFAELYMASVVCLHGVPKKIVSDRGSQFTSKFWQKLQSELGTRLNFSTAYHPQTD 1219
Query: 3753 GQSERTIQTLEDMLRACALDFGNKWVDNLAFAEFAYNNSYHSSIGMAPFEALYGRRCRTP 3932
GQ+ER Q LEDMLRAC LDFG W NL +AEF+YNNSY +S+ M+P EALYGR+CRTP
Sbjct: 1220 GQTERVNQILEDMLRACVLDFGGSWDKNLPYAEFSYNNSYQASLQMSPNEALYGRKCRTP 1279
Query: 3933 LYWDEVGVRSHWRQRNLMPELEEMQKQVKIIQDRLQTAKSRQKSYADNRRRDLEFNVRDR 4112
L D+ G R + L E +++VKIIQ+RL+ A+SRQKSYADNRRRDL F D
Sbjct: 1280 LLLDQTGERQVFG----TDILREAEEKVKIIQERLRVAQSRQKSYADNRRRDLAFEEGDY 1335
Query: 4113 VFLKLTPHRGKLRYPRRGK 4169
V+L++TP RG R+ +GK
Sbjct: 1336 VYLRVTPLRGVHRFQTKGK 1354
Score = 293 bits (749), Expect(3) = 0.0
Identities = 172/406 (42%), Positives = 229/406 (56%), Gaps = 1/406 (0%)
Frame = +2
Query: 1019 LCFKCGKPGHTKDQCPEMQQVTPEMSRKAGRPPIMRGTTEGRNNKPQIKAKVYALDGLPV 1198
+CF CG PGH D+CP+ ++V T +N P KA+V +
Sbjct: 319 ICFNCGDPGHYADKCPKPRRVK-------------NVPTPNNSNAPAPKARVNHVAAAEA 365
Query: 1199 DTEVEVVEGMIKIFSQLARVLIDPGATHSFVSLHFIKHTPIPPVNMHYQLIVSTPMGVNK 1378
+VV G + S A VL D GATHSF+S F + V++ L+V+TP N+
Sbjct: 366 QNAPDVVLGTFPVNSIPATVLFDSGATHSFLSKSFASKHGMEVVSLGRPLLVNTP--GNQ 423
Query: 1379 ITEVKY-PDCDICVENVVLSGDLIALPLEGYDVILGMDWLSKHYAQLDCRRKLVKFSRPS 1555
+ +Y P I +E V LI L + DVILGMDWLS+H +DC + + +
Sbjct: 424 VFSTRYCPSVTIEIEEVPFPSSLILLESKDLDVILGMDWLSRHRGVIDCANRKGTLTNSN 483
Query: 1556 MPILVFQGKRTKRENPFLSAMKARKLLWKGCQGYLVYLLNKPKEEVKLDIVPVVRELRDV 1735
+ F F S+ K+ + +LN +V L +P+V++ DV
Sbjct: 484 GETVSF----------FASSPKSHGV-----------VLN----QVALQEIPIVQDNPDV 518
Query: 1736 FPEELTTLPLDREVEFGIELVPDAKPISRTPYRMAXXXXXXXXXXXXXXXXXGYIRPSTS 1915
FPE+L +P R++EF I+LVP PI + PYRMA GYIRPSTS
Sbjct: 519 FPEDLPGMPPKRDIEFRIDLVPGTNPIHKRPYRMAANELAEVKKQVDDLLQKGYIRPSTS 578
Query: 1916 PWGAPVLFVKKKDGTLRMCIDYRGLNNVTVKNKYLLPLIDELFDQLRGAGYFSKLDLR*G 2095
PWGAPV+FV+KKD T RMC+DYR LN VT+KNKY LP ID+LFDQL+GA FSK+DLR G
Sbjct: 579 PWGAPVIFVEKKDHTQRMCVDYRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSG 638
Query: 2096 YYQVRIREKDIPMTAFNTRYGHYEFVVMPFELTNAPATFMDLIHSL 2233
Y+Q+RIRE+DIP TAF TRYG +E VM F LTNAPA FM+L++ +
Sbjct: 639 YHQLRIREEDIPKTAFTTRYGLFECTVMSFGLTNAPAFFMNLMNKV 684
Score = 120 bits (300), Expect(3) = 0.0
Identities = 58/117 (49%), Positives = 76/117 (64%)
Frame = +1
Query: 4171 LSPRHIGPFGIIDRIGKVAYRLALPNERIGIHDVFHVSQLKKYHPAPDHVLNDDQLKLQV 4350
L+PR +GPF I+ R G+VAY+L LP GIHDVFHVSQLKK P + D+++L
Sbjct: 1355 LAPRFVGPFKIVSRRGEVAYQLELPPSMAGIHDVFHVSQLKKCLRVPTEEADPDRIELHE 1414
Query: 4351 DLSYEERPTEIIERSVKELRGRQIPMCKVIWKHHGIEEATWETEEYLKKKYPELIDT 4521
DL+Y E+P I+E S ++ R R I CKV W +H EEATWE E+ LK +P L +
Sbjct: 1415 DLTYVEKPVRILEVSERKTRNRVIRFCKVQWSNHSEEEATWEREDELKSAHPHLFSS 1471
Score = 90.1 bits (222), Expect = 9e-15
Identities = 64/229 (27%), Positives = 103/229 (44%), Gaps = 6/229 (2%)
Frame = +1
Query: 121 SQNRQSEPTREATPRPEQATHKVIENFMIKMTELLETSMATRRNEQV------PVTGADE 282
+ N + EPT + + + T+L+ + +N+Q P
Sbjct: 16 ANNNEGEPT--------------LAQILAQQTQLINLLVQQAQNQQGNNQNQNPPPPPQN 61
Query: 283 ALERFLKFRPLEFYGDVEQEIKAGLFLEQLNDIYDTLKYEDALRVTFAAFRLRGMAMDWW 462
L FL+ RP F ++AG +L + D ++ + +V FA+ +L G A +WW
Sbjct: 62 KLADFLRVRPPTF-SSTTNPVEAGDWLHAVEKKLDLIQCTEQEKVFFASHQLHGPAAEWW 120
Query: 463 LRASEARTLKNQPWTCNDFQEEFKKEYIPRWVREQREDEFQQLRQGNLTVAQYTAKFNRL 642
+ R +P T +F FKK +IP V ++ EF+ L QG+ +V +Y FNRL
Sbjct: 121 DHFRQGRA-GGEPITWQEFTAAFKKTHIPTGVVALKKREFRALNQGSRSVTEYLHDFNRL 179
Query: 643 AKYCLRLIDTDENKTRQFVKGLRVELQRALAPLPPMGFAAAVEAATRTE 789
A+Y + TDE + +F++GL EL L F V+ A R E
Sbjct: 180 ARYAPEDVRTDEERQEKFLEGLNDELSYTLMSTEFRDFQQLVDKAIRQE 228
>gb|ABA99289.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1805
Score = 785 bits (2028), Expect(3) = 0.0
Identities = 395/682 (57%), Positives = 493/682 (72%), Gaps = 29/682 (4%)
Frame = +3
Query: 2229 VFNLYLDKFVVIFIDDILVYSPNPEVHEQHLRKVLQTLREHKLYAKFSKCEFWMSQVTFL 2408
VF YLDKFVV+FIDDIL+YS + E H+ HLR VL LREH+LYAK SKCEFW+S+V FL
Sbjct: 1008 VFMEYLDKFVVVFIDDILIYSQSEEDHQHHLRLVLGKLREHQLYAKLSKCEFWLSEVKFL 1067
Query: 2409 GHVITQEGISVDPAKVEAVTYWTQPKTPTEVRSFLGMAGYYRRFIKDFSRIAGPLTQLTR 2588
GHVI+ +G++VDP V AVT W QPKT T++RSFLG+AGYYRRFI++FS+IA P+TQL +
Sbjct: 1068 GHVISAKGVAVDPETVTAVTDWKQPKTVTQIRSFLGLAGYYRRFIENFSKIARPMTQLLK 1127
Query: 2589 KATKFEWTEKCERSFQELKNRLTSAPVLTLLDPNKEFSLYTDASGEGLGAVLMQDRKVVA 2768
K KF W+ +CE++FQ LK +L S+PVL L D K+F +Y DAS +GLG VLMQD VVA
Sbjct: 1128 KEEKFVWSPQCEKAFQTLKEKLVSSPVLILPDTRKDFMVYCDASRQGLGCVLMQDGHVVA 1187
Query: 2769 YISRKLKDHERNYPTHDLELAAIVFALKKWRHYLYRAKYEIFTDHKSLKYLFSQKDLNMR 2948
Y SR+L+ HE NYPTHDLELAA+V ALK WRHYL + EI+TDHKSLKY+F+Q DLN+R
Sbjct: 1188 YASRQLRPHEGNYPTHDLELAAVVHALKIWRHYLIGNRCEIYTDHKSLKYIFTQSDLNLR 1247
Query: 2949 QRRWMELLEEYRCPINYHPGKANVVADALSRKAKISSLSLTS------------------ 3074
QRRW+EL+++Y I+YHPGKANVVADALSRK+ ++L++ S
Sbjct: 1248 QRRWLELIKDYDVGIHYHPGKANVVADALSRKSHCNTLNVRSIPPELNQQMEALNLSIVG 1307
Query: 3075 -----------TLQEDIRSAQKSNKEFQEFKNRVKAKGLEDFRTLEADGSLYFRNRLCVP 3221
TL + IR AQK++ + +K F T + G+L+ NR+CVP
Sbjct: 1308 RGFLAALEAKPTLLDQIREAQKNDPDMHGLLKNMKQGKAAGF-TEDEHGTLWNGNRVCVP 1366
Query: 3222 NDTELKRKILEEAHRSKYSMHPGENKMYKDLKQKFWWNGMKREIAEYVAACLTCQRVKAE 3401
+ ELK+ IL+EAH S YS+HPG KMY DLK+K+WW MKREIAE+VA C CQRVKAE
Sbjct: 1367 DSRELKQLILQEAHESPYSIHPGSTKMYLDLKEKYWWVSMKREIAEFVALCDVCQRVKAE 1426
Query: 3402 HQKSAGLLQPLPFPEWKWDHVTMDFVTGLPRTKGYKDAIWVIVDRLTKVAHFIAINISYP 3581
HQ+ AGLLQPL PEWKWD + MDF+TGLP+T+G D+IWVIVDRLTKVA FI + +Y
Sbjct: 1427 HQRPAGLLQPLQVPEWKWDEIGMDFITGLPKTQGGYDSIWVIVDRLTKVARFIPVKTTYG 1486
Query: 3582 LDKLTQIYVDEIVRLHGVPVDIVSDRDPRFASMFWPKFQAAMGTNLSYSTTAHPQTDGQS 3761
+KL ++Y IV LHGVP IVSDR +F S FW K Q +GT L++ST HPQTDGQ+
Sbjct: 1487 GNKLAELYFARIVSLHGVPKKIVSDRGSQFTSHFWKKLQEELGTRLNFSTAYHPQTDGQT 1546
Query: 3762 ERTIQTLEDMLRACALDFGNKWVDNLAFAEFAYNNSYHSSIGMAPFEALYGRRCRTPLYW 3941
ER Q LEDMLRAC LDFG W +L +AEF+YNNSY +SI MAP+EALYGR+CRTPL W
Sbjct: 1547 ERLNQILEDMLRACVLDFGKTWDKSLPYAEFSYNNSYQASIQMAPYEALYGRKCRTPLLW 1606
Query: 3942 DEVGVRSHWRQRNLMPELEEMQKQVKIIQDRLQTAKSRQKSYADNRRRDLEFNVRDRVFL 4121
D+VG + L E + +V+II+D L+ A+SRQKSYADNRRRDLEF V D V+L
Sbjct: 1607 DQVGESQVFG----TDILREAEAKVRIIRDNLKVAQSRQKSYADNRRRDLEFAVDDFVYL 1662
Query: 4122 KLTPHRGKLRYPRRGKFKSPTY 4187
++TP RG R+ +GK +P Y
Sbjct: 1663 RVTPLRGVHRFQTKGKL-APRY 1683
Score = 302 bits (773), Expect(3) = 0.0
Identities = 171/409 (41%), Positives = 229/409 (55%), Gaps = 3/409 (0%)
Frame = +2
Query: 1016 RLCFKCGKPGHTKDQCPEMQQVTPEMSRKAGRPPIMRGTTEGRNNKPQIKAKVYALDGLP 1195
RLCF C +PGH D+CP+ + R G+ P K I+ +V +
Sbjct: 640 RLCFNCFEPGHFADKCPKPR-------RHQGQAP----PRSNNGGKDVIRGRVNHVTAED 688
Query: 1196 VDTEVEVVEGMIKIFSQLARVLIDPGATHSFVSLHFIKHTPIPPVNMHYQLIVSTPMGVN 1375
V T +V+ G + S A +L D GA+HSF+S+ F+ + + L+++TP GV
Sbjct: 689 VLTTPDVIVGTFLVHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGV- 747
Query: 1376 KITEVKY--PDCDICVENVVLSGDLIALPLEGYDVILGMDWLSKHYAQLDCRRKLVKFSR 1549
KY P I ++ + DLI L + DVILGM+WL++ +DC R+ V R
Sbjct: 748 --MTAKYYSPAVPIEIQGIPFPSDLILLDTKNLDVILGMNWLAQFQGVVDCARRTVTLYR 805
Query: 1550 -PSMPILVFQGKRTKRENPFLSAMKARKLLWKGCQGYLVYLLNKPKEEVKLDIVPVVREL 1726
P P++ F + R + +++L +P+VRE
Sbjct: 806 GPEQPVVFFAPPTSVRSSEL--------------------------HQIELSEIPIVREF 839
Query: 1727 RDVFPEELTTLPLDREVEFGIELVPDAKPISRTPYRMAXXXXXXXXXXXXXXXXXGYIRP 1906
DVFPEEL +P RE+EF I+L P P+ + PYRMA GYIRP
Sbjct: 840 GDVFPEELPGMPPKREIEFRIDLAPGTTPLHKRPYRMAANELAEVKKQLEELKEKGYIRP 899
Query: 1907 STSPWGAPVLFVKKKDGTLRMCIDYRGLNNVTVKNKYLLPLIDELFDQLRGAGYFSKLDL 2086
STSPWGAPV+FV+KKD T RMC+DYR LN VT+KNKY LP ID+LFDQL+GA FSK+DL
Sbjct: 900 STSPWGAPVIFVEKKDKTKRMCVDYRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDL 959
Query: 2087 R*GYYQVRIREKDIPMTAFNTRYGHYEFVVMPFELTNAPATFMDLIHSL 2233
R GY+Q+RIRE+DIP TAF TRYG YEF VM F LTNAPA FM+L++ +
Sbjct: 960 RSGYHQLRIREEDIPKTAFTTRYGLYEFTVMSFGLTNAPAFFMNLMNKV 1008
Score = 113 bits (283), Expect(3) = 0.0
Identities = 54/114 (47%), Positives = 75/114 (65%)
Frame = +1
Query: 4171 LSPRHIGPFGIIDRIGKVAYRLALPNERIGIHDVFHVSQLKKYHPAPDHVLNDDQLKLQV 4350
L+PR++GPF I R G+VAY+L LP +HDVFHVSQLKK P + +Q++++
Sbjct: 1679 LAPRYVGPFRITARRGEVAYQLELPASLGNVHDVFHVSQLKKCLRVPSEQADSEQIEVRE 1738
Query: 4351 DLSYEERPTEIIERSVKELRGRQIPMCKVIWKHHGIEEATWETEEYLKKKYPEL 4512
DL+Y ERP +I++ + R R I CKV W +H EEATWE E+ LK +P+L
Sbjct: 1739 DLTYVERPVKILDAMERRTRNRVIRFCKVQWSNHAEEEATWEREDELKAAHPDL 1792
Score = 85.5 bits (210), Expect = 2e-13
Identities = 63/236 (26%), Positives = 105/236 (44%), Gaps = 6/236 (2%)
Frame = +1
Query: 100 DVAVSESSQNRQSEPTREATPRPEQA--THKVIENFMIKMTELLETSMATRRN----EQV 261
+V E +Q S P + P P T+ ++ + + ++ + +N
Sbjct: 311 NVNTGEGNQPEGSNPNPQGNPPPPPPPDTNAILTQILAQQANMMNAFLHHLQNPPQQNAP 370
Query: 262 PVTGADEALERFLKFRPLEFYGDVEQEIKAGLFLEQLNDIYDTLKYEDALRVTFAAFRLR 441
P L FL+ RP F + A +L + DT++ D +V FAA +L+
Sbjct: 371 PPPPQHSKLAEFLRIRPPTFSSS-NNPVDALDWLHAVGKKLDTVQCSDEEKVIFAAHQLQ 429
Query: 442 GMAMDWWLRASEARTLKNQPWTCNDFQEEFKKEYIPRWVREQREDEFQQLRQGNLTVAQY 621
G A WW +A + QP T F F++ ++P V ++ EF++L+QGN +V +Y
Sbjct: 430 GPASLWWDHF-QATQPEGQPITWTRFTAAFRRTHVPAGVVALKKREFRELKQGNRSVMEY 488
Query: 622 TAKFNRLAKYCLRLIDTDENKTRQFVKGLRVELQRALAPLPPMGFAAAVEAATRTE 789
+FN LA+Y + DE K +F+ G+ EL L F V+ + R E
Sbjct: 489 LHEFNNLARYAPEDVREDEEKQEKFLAGMDPELSVRLVSGDYPDFQRLVDKSIRLE 544
>gb|AAM74399.1|AC119149_14 Putative retroelement [Oryza sativa Japonica Group]
gi|31431043|gb|AAP52881.1| retrotransposon protein,
putative, Ty3-gypsy subclass [Oryza sativa Japonica
Group]
Length = 1821
Score = 785 bits (2026), Expect(3) = 0.0
Identities = 394/682 (57%), Positives = 493/682 (72%), Gaps = 29/682 (4%)
Frame = +3
Query: 2229 VFNLYLDKFVVIFIDDILVYSPNPEVHEQHLRKVLQTLREHKLYAKFSKCEFWMSQVTFL 2408
VF YLDKFVV+FIDDIL+YS + E H+ HLR VL LREH+LYAK SKCEFW+S+V FL
Sbjct: 1024 VFMEYLDKFVVVFIDDILIYSQSEEDHQHHLRLVLGKLREHQLYAKLSKCEFWLSEVKFL 1083
Query: 2409 GHVITQEGISVDPAKVEAVTYWTQPKTPTEVRSFLGMAGYYRRFIKDFSRIAGPLTQLTR 2588
GHVI+ +G++VDP V AVT W QPKT T++RSFLG+AGYYRRFI++FS+IA P+TQL +
Sbjct: 1084 GHVISAKGVAVDPETVIAVTDWKQPKTVTQIRSFLGLAGYYRRFIENFSKIARPMTQLLK 1143
Query: 2589 KATKFEWTEKCERSFQELKNRLTSAPVLTLLDPNKEFSLYTDASGEGLGAVLMQDRKVVA 2768
K KF W+ +CE++FQ LK +L S+PVL L D K+F +Y DAS +GLG VLMQD VVA
Sbjct: 1144 KEEKFVWSPQCEKAFQTLKEKLVSSPVLILPDTRKDFMVYCDASRQGLGCVLMQDGHVVA 1203
Query: 2769 YISRKLKDHERNYPTHDLELAAIVFALKKWRHYLYRAKYEIFTDHKSLKYLFSQKDLNMR 2948
Y SR+L+ HE NYPTHDLELAA+V ALK WRHYL + EI+TDHKSLKY+F+Q DLN+R
Sbjct: 1204 YASRQLRPHEGNYPTHDLELAAVVHALKIWRHYLIGNRCEIYTDHKSLKYIFTQSDLNLR 1263
Query: 2949 QRRWMELLEEYRCPINYHPGKANVVADALSRKAKISSLSLTS------------------ 3074
QRRW+EL+++Y I+YHPGKANVVADALSRK+ ++L++
Sbjct: 1264 QRRWLELIKDYDVGIHYHPGKANVVADALSRKSHCNTLNVRGIPPELSQQMEALNLSIVG 1323
Query: 3075 -----------TLQEDIRSAQKSNKEFQEFKNRVKAKGLEDFRTLEADGSLYFRNRLCVP 3221
TL + IR AQK++ + +K F T + G+L+ NR+CVP
Sbjct: 1324 HGVLAALEAKPTLLDQIREAQKNDPDMHGLLKNMKQGKAAGF-TEDEHGTLWNGNRVCVP 1382
Query: 3222 NDTELKRKILEEAHRSKYSMHPGENKMYKDLKQKFWWNGMKREIAEYVAACLTCQRVKAE 3401
+D ELK+ IL+EAH S YS+HPG KMY DLK+K+WW MKREIAE+VA C CQRVKAE
Sbjct: 1383 DDRELKQLILQEAHESPYSIHPGSTKMYLDLKEKYWWVSMKREIAEFVALCDVCQRVKAE 1442
Query: 3402 HQKSAGLLQPLPFPEWKWDHVTMDFVTGLPRTKGYKDAIWVIVDRLTKVAHFIAINISYP 3581
HQ+ AGLLQPL PEWKWD + MDF+TGLP+T+G D+IWV+VDRLTKVA FI + +Y
Sbjct: 1443 HQRPAGLLQPLQVPEWKWDEIGMDFITGLPKTQGGYDSIWVVVDRLTKVARFIPVKTTYG 1502
Query: 3582 LDKLTQIYVDEIVRLHGVPVDIVSDRDPRFASMFWPKFQAAMGTNLSYSTTAHPQTDGQS 3761
+KL ++Y IV LHGVP IVSDR +F S FW K Q +GT L++ST HPQTDGQ+
Sbjct: 1503 GNKLAELYFARIVSLHGVPKRIVSDRGSQFTSHFWKKLQEELGTRLNFSTAYHPQTDGQT 1562
Query: 3762 ERTIQTLEDMLRACALDFGNKWVDNLAFAEFAYNNSYHSSIGMAPFEALYGRRCRTPLYW 3941
ER Q LEDMLRAC LDFG W +L +AEF+YNNSY +SI MAP+EALYGR+CRTPL W
Sbjct: 1563 ERLNQILEDMLRACVLDFGKTWDKSLPYAEFSYNNSYQASIQMAPYEALYGRKCRTPLLW 1622
Query: 3942 DEVGVRSHWRQRNLMPELEEMQKQVKIIQDRLQTAKSRQKSYADNRRRDLEFNVRDRVFL 4121
D+VG + L E + +V+II+D L+ A+SRQKSYADNRRRDLEF V D V+L
Sbjct: 1623 DQVGESQVFG----TDILREAEAKVRIIRDNLKVAQSRQKSYADNRRRDLEFAVDDFVYL 1678
Query: 4122 KLTPHRGKLRYPRRGKFKSPTY 4187
++TP RG R+ +GK +P Y
Sbjct: 1679 RVTPLRGVHRFQTKGKL-APRY 1699
Score = 300 bits (768), Expect(3) = 0.0
Identities = 172/409 (42%), Positives = 232/409 (56%), Gaps = 3/409 (0%)
Frame = +2
Query: 1016 RLCFKCGKPGHTKDQCPEMQQVTPEMSRKAGRPPIMRGTTEGRNNKPQIKAKVYALDGLP 1195
RLCF C +PGH D+CP+ + R+ G+ P R GR+ I+ +V +
Sbjct: 656 RLCFNCFEPGHFADKCPKPR-------RQQGQAP-PRSNNGGRD---VIRGRVNHVTAED 704
Query: 1196 VDTEVEVVEGMIKIFSQLARVLIDPGATHSFVSLHFIKHTPIPPVNMHYQLIVSTPMGVN 1375
V T +V+ G + S A +L D GA+HSF+S+ F+ + + L+++TP GV
Sbjct: 705 VLTTPDVIVGTFLVHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGV- 763
Query: 1376 KITEVKY--PDCDICVENVVLSGDLIALPLEGYDVILGMDWLSKHYAQLDCRRKLVKFSR 1549
KY P I ++ + DLI L + DVILGM+WL++ +DC R+ V R
Sbjct: 764 --MTAKYYSPTVPIEIQGIPFPSDLILLDTKNLDVILGMNWLAQFQGVVDCARRTVTLYR 821
Query: 1550 -PSMPILVFQGKRTKRENPFLSAMKARKLLWKGCQGYLVYLLNKPKEEVKLDIVPVVREL 1726
P P++ F + R + +++L +P+VRE
Sbjct: 822 GPEQPVVFFAPPTSVRSSEL--------------------------HQIELSEIPIVREF 855
Query: 1727 RDVFPEELTTLPLDREVEFGIELVPDAKPISRTPYRMAXXXXXXXXXXXXXXXXXGYIRP 1906
DVFPEEL +P RE+EF I+L P P+ + PYRMA GYIRP
Sbjct: 856 GDVFPEELPGMPPKREIEFRIDLAPGTTPLYKRPYRMAANELAEVKKQLEELKEKGYIRP 915
Query: 1907 STSPWGAPVLFVKKKDGTLRMCIDYRGLNNVTVKNKYLLPLIDELFDQLRGAGYFSKLDL 2086
STSPW APV+FV+KKD T RMC+DYR LN VT+KNKY LP ID+LFDQL+GA FSK+DL
Sbjct: 916 STSPWDAPVIFVEKKDKTKRMCVDYRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDL 975
Query: 2087 R*GYYQVRIREKDIPMTAFNTRYGHYEFVVMPFELTNAPATFMDLIHSL 2233
R GY+Q+RIRE+DIP TAF TRYG YEF VM F LTNAPA FM+L++ +
Sbjct: 976 RSGYHQLRIREEDIPKTAFTTRYGLYEFTVMSFGLTNAPAFFMNLMNKV 1024
Score = 115 bits (287), Expect(3) = 0.0
Identities = 54/114 (47%), Positives = 76/114 (66%)
Frame = +1
Query: 4171 LSPRHIGPFGIIDRIGKVAYRLALPNERIGIHDVFHVSQLKKYHPAPDHVLNDDQLKLQV 4350
L+PR++GPF I+ R G+VAY+L LP +HDVFHVSQLKK P + +Q++++
Sbjct: 1695 LAPRYVGPFRIVARRGEVAYQLELPASLGNVHDVFHVSQLKKCLRVPSEQADSEQIEVRE 1754
Query: 4351 DLSYEERPTEIIERSVKELRGRQIPMCKVIWKHHGIEEATWETEEYLKKKYPEL 4512
DL+Y ERP +I++ + R R I CKV W +H EEATWE E+ LK +P+L
Sbjct: 1755 DLTYVERPVKILDTMERRTRNRVIRFCKVQWSNHAEEEATWEREDELKAAHPDL 1808
Score = 80.5 bits (197), Expect = 7e-12
Identities = 63/230 (27%), Positives = 100/230 (43%), Gaps = 6/230 (2%)
Frame = +1
Query: 118 SSQNRQSEPTREATPRPEQA--THKVIENFMIK----MTELLETSMATRRNEQVPVTGAD 279
S+ N Q P P P T+ ++ + + MT L + P
Sbjct: 334 SNHNHQGNPPPPPPPPPPPPPDTNAILTQILAQQANMMTAFLHHLQNPPQQNAPPPPPQH 393
Query: 280 EALERFLKFRPLEFYGDVEQEIKAGLFLEQLNDIYDTLKYEDALRVTFAAFRLRGMAMDW 459
L FL+ RP F + A +L + T++ D +V FAA +L+G A W
Sbjct: 394 SKLAEFLRIRPPTFSSS-NNPVDALDWLHAVGKKLGTVQCSDEEKVIFAAHQLQGPASLW 452
Query: 460 WLRASEARTLKNQPWTCNDFQEEFKKEYIPRWVREQREDEFQQLRQGNLTVAQYTAKFNR 639
W +A + QP T F F++ ++P V ++ EF++L+QGN +V +Y +FN
Sbjct: 453 WDHF-QATQPEGQPITWARFTAAFRRTHVPAGVVALKKREFRELKQGNRSVMEYLHEFNN 511
Query: 640 LAKYCLRLIDTDENKTRQFVKGLRVELQRALAPLPPMGFAAAVEAATRTE 789
LA+Y + DE K +F+ G+ EL L F V+ + R E
Sbjct: 512 LARYAPEDVREDEEKQEKFLAGMDPELSVRLVSGDYPDFQRLVDKSIRLE 561
>gb|AAM01156.1|AC113336_8 Putative retroelement [Oryza sativa Japonica Group]
gi|31430462|gb|AAP52371.1| retrotransposon protein,
putative, Ty3-gypsy subclass [Oryza sativa Japonica
Group]
Length = 1784
Score = 783 bits (2022), Expect(3) = 0.0
Identities = 395/682 (57%), Positives = 490/682 (71%), Gaps = 29/682 (4%)
Frame = +3
Query: 2229 VFNLYLDKFVVIFIDDILVYSPNPEVHEQHLRKVLQTLREHKLYAKFSKCEFWMSQVTFL 2408
VF YLDKFVV+FIDDIL+YS + E H+ HLR VL LREH+LYAK SKCEFW+S+V FL
Sbjct: 987 VFMEYLDKFVVVFIDDILIYSQSEEDHQHHLRLVLGKLREHQLYAKLSKCEFWLSEVKFL 1046
Query: 2409 GHVITQEGISVDPAKVEAVTYWTQPKTPTEVRSFLGMAGYYRRFIKDFSRIAGPLTQLTR 2588
GHVI+ +G++VDP V AVT W QPKT T+VRSFLG+AGYYRRFI++FS+IA P+TQL +
Sbjct: 1047 GHVISAKGVAVDPETVTAVTDWKQPKTVTQVRSFLGLAGYYRRFIENFSKIARPMTQLLK 1106
Query: 2589 KATKFEWTEKCERSFQELKNRLTSAPVLTLLDPNKEFSLYTDASGEGLGAVLMQDRKVVA 2768
K KF W+ +CE++FQ LK +L S+PVL L D K+F +Y DAS +GLG VLMQD VVA
Sbjct: 1107 KEEKFVWSPQCEKAFQTLKEKLVSSPVLILPDTRKDFMVYCDASRQGLGCVLMQDGHVVA 1166
Query: 2769 YISRKLKDHERNYPTHDLELAAIVFALKKWRHYLYRAKYEIFTDHKSLKYLFSQKDLNMR 2948
Y SR+L+ HE NYPTHDLELAA+V ALK WRHYL + EI+TDHKSLKY+F+Q DLN+R
Sbjct: 1167 YASRQLRPHEGNYPTHDLELAAVVHALKIWRHYLIGNRCEIYTDHKSLKYIFTQSDLNLR 1226
Query: 2949 QRRWMELLEEYRCPINYHPGKANVVADALSRKAK-------------------------- 3050
QRRW+EL+++Y I+YHPGKANVVADALSRK+
Sbjct: 1227 QRRWLELIKDYDVGIHYHPGKANVVADALSRKSHCNTLNARDIPPELNQQMEALNLSIVG 1286
Query: 3051 ---ISSLSLTSTLQEDIRSAQKSNKEFQEFKNRVKAKGLEDFRTLEADGSLYFRNRLCVP 3221
+++L TL + IR AQK++ + +K F T + G+L+ NR+CVP
Sbjct: 1287 RGFLAALEAKPTLLDQIREAQKNDPDMHGLLKNMKQGKAAGF-TEDEHGTLWNGNRVCVP 1345
Query: 3222 NDTELKRKILEEAHRSKYSMHPGENKMYKDLKQKFWWNGMKREIAEYVAACLTCQRVKAE 3401
D ELK+ IL+EAH S YS+HPG KMY DLK K+WW MKREIAE+VA C CQRVKAE
Sbjct: 1346 ADKELKQLILQEAHESPYSIHPGSTKMYLDLKGKYWWVSMKREIAEFVALCDVCQRVKAE 1405
Query: 3402 HQKSAGLLQPLPFPEWKWDHVTMDFVTGLPRTKGYKDAIWVIVDRLTKVAHFIAINISYP 3581
HQ+ AGLLQPL PEWKWD + MDF+TGLP+T+G D+IWVIVDRLTKVA FI + +Y
Sbjct: 1406 HQRPAGLLQPLQVPEWKWDEIGMDFITGLPKTQGGYDSIWVIVDRLTKVARFIPVKTTYG 1465
Query: 3582 LDKLTQIYVDEIVRLHGVPVDIVSDRDPRFASMFWPKFQAAMGTNLSYSTTAHPQTDGQS 3761
+KL ++Y IV LHG+P IVSDR +F S FW K Q +GT L++ST HPQTDGQ+
Sbjct: 1466 GNKLAELYFARIVSLHGIPKKIVSDRGSQFTSHFWKKLQEELGTRLNFSTAYHPQTDGQT 1525
Query: 3762 ERTIQTLEDMLRACALDFGNKWVDNLAFAEFAYNNSYHSSIGMAPFEALYGRRCRTPLYW 3941
ER Q LEDMLRAC LDFG W +L +AEF+YNNSY +SI MAP+EALYGR+CRTPL W
Sbjct: 1526 ERLNQILEDMLRACVLDFGKTWDKSLPYAEFSYNNSYQASIQMAPYEALYGRKCRTPLLW 1585
Query: 3942 DEVGVRSHWRQRNLMPELEEMQKQVKIIQDRLQTAKSRQKSYADNRRRDLEFNVRDRVFL 4121
D+VG + L E + +V+II+D L+ A+SRQKSYADNRRRDLEF V D V+L
Sbjct: 1586 DQVGESQVFG----TDILREAEAKVRIIRDNLKVAQSRQKSYADNRRRDLEFAVDDFVYL 1641
Query: 4122 KLTPHRGKLRYPRRGKFKSPTY 4187
++TP RG R+ +GK +P Y
Sbjct: 1642 RVTPLRGVHRFQTKGKL-APRY 1662
Score = 303 bits (775), Expect(3) = 0.0
Identities = 173/409 (42%), Positives = 230/409 (56%), Gaps = 3/409 (0%)
Frame = +2
Query: 1016 RLCFKCGKPGHTKDQCPEMQQVTPEMSRKAGRPPIMRGTTEGRNNKPQIKAKVYALDGLP 1195
RLCF C +PGH D+CP+ + R+ G+ P K I+ +V +
Sbjct: 619 RLCFNCFEPGHFADKCPKPR-------RQQGQAP----PRSNNGGKDVIRGRVNHVAAED 667
Query: 1196 VDTEVEVVEGMIKIFSQLARVLIDPGATHSFVSLHFIKHTPIPPVNMHYQLIVSTPMGVN 1375
V T +V+ G I S A +L D GA+HSF+S+ F+ + + L+++TP GV
Sbjct: 668 VLTTPDVIVGTFLIHSIPATILFDSGASHSFISVPFVGKNQLGVERLRNPLLITTPGGV- 726
Query: 1376 KITEVKY--PDCDICVENVVLSGDLIALPLEGYDVILGMDWLSKHYAQLDCRRKLVKFSR 1549
KY P I ++ + DLI L + DVILGM+WL++ +DC R+ V R
Sbjct: 727 --MTAKYYSPAVPIEIQGIPFPSDLILLDTKNLDVILGMNWLAQFQGVVDCARRTVTLYR 784
Query: 1550 -PSMPILVFQGKRTKRENPFLSAMKARKLLWKGCQGYLVYLLNKPKEEVKLDIVPVVREL 1726
P P++ F + R + +++L +PVVRE
Sbjct: 785 GPEQPVVFFAPPTSVRSSEL--------------------------HQIELSEIPVVREF 818
Query: 1727 RDVFPEELTTLPLDREVEFGIELVPDAKPISRTPYRMAXXXXXXXXXXXXXXXXXGYIRP 1906
DVFPEEL +P RE+EF I+L P P+ + PYRMA GYIRP
Sbjct: 819 GDVFPEELPGMPPKREIEFRIDLAPGTTPLHKRPYRMAANELAEVKKQLEELKEKGYIRP 878
Query: 1907 STSPWGAPVLFVKKKDGTLRMCIDYRGLNNVTVKNKYLLPLIDELFDQLRGAGYFSKLDL 2086
STSPWGAPV+FV+KKD T RMC+DYR LN VT+KNKY LP ID+LFDQL+GA FSK+DL
Sbjct: 879 STSPWGAPVIFVEKKDKTKRMCVDYRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDL 938
Query: 2087 R*GYYQVRIREKDIPMTAFNTRYGHYEFVVMPFELTNAPATFMDLIHSL 2233
R GY+Q+RIRE+DIP TAF TRYG YEF VM F LTNAPA FM+L++ +
Sbjct: 939 RSGYHQLRIREEDIPKTAFTTRYGLYEFTVMSFGLTNAPAFFMNLMNKV 987
Score = 115 bits (287), Expect(3) = 0.0
Identities = 54/114 (47%), Positives = 76/114 (66%)
Frame = +1
Query: 4171 LSPRHIGPFGIIDRIGKVAYRLALPNERIGIHDVFHVSQLKKYHPAPDHVLNDDQLKLQV 4350
L+PR++GPF +I R G+VAY+L LP +HDVFHVSQLKK P + +Q++++
Sbjct: 1658 LAPRYVGPFRVIARRGEVAYQLELPASLGNVHDVFHVSQLKKCLRVPSEQADSEQIEVRE 1717
Query: 4351 DLSYEERPTEIIERSVKELRGRQIPMCKVIWKHHGIEEATWETEEYLKKKYPEL 4512
DL+Y ERP +I++ + R R I CKV W +H EEATWE E+ LK +P+L
Sbjct: 1718 DLTYVERPVKILDTMERRTRNRVIRFCKVQWSNHAEEEATWEREDELKAAHPDL 1771
Score = 89.7 bits (221), Expect = 1e-14
Identities = 65/236 (27%), Positives = 108/236 (45%), Gaps = 6/236 (2%)
Frame = +1
Query: 100 DVAVSESSQNRQSEPTREATPRPEQA--THKVIENFMIKMTELLETSMATRRN----EQV 261
+V+ E +Q S P + P P T+ ++ + + L+ + +N
Sbjct: 293 NVSTGEGNQPEGSNPNPQGNPPPPPPPDTNAILTQILAQQANLMTAFLHHLQNPPQQNAP 352
Query: 262 PVTGADEALERFLKFRPLEFYGDVEQEIKAGLFLEQLNDIYDTLKYEDALRVTFAAFRLR 441
P+ L FL+ RP F + A +L + DT++ D +VTFAA +L+
Sbjct: 353 PLPPQHSKLAEFLRIRPPTFSSS-NNPVDALDWLHAVGKKLDTVQCSDEEKVTFAAHQLQ 411
Query: 442 GMAMDWWLRASEARTLKNQPWTCNDFQEEFKKEYIPRWVREQREDEFQQLRQGNLTVAQY 621
G A WW +A + QP T F F++ ++P V ++ EF++L+QGN +V +Y
Sbjct: 412 GPASLWWDHF-QATQPEGQPITWARFTAAFRRTHVPAGVVALKKREFRELKQGNRSVMEY 470
Query: 622 TAKFNRLAKYCLRLIDTDENKTRQFVKGLRVELQRALAPLPPMGFAAAVEAATRTE 789
+FN LA+Y + DE K +F+ G+ EL L F V+ + R E
Sbjct: 471 LHEFNNLARYAPEDVREDEEKQEKFLAGMDPELSVRLVSGDYPDFQRLVDKSIRLE 526
>emb|CAH66048.1| OSIGBa0131F24.2 [Oryza sativa Indica Group]
Length = 1437
Score = 783 bits (2022), Expect(3) = 0.0
Identities = 385/676 (56%), Positives = 488/676 (72%), Gaps = 29/676 (4%)
Frame = +3
Query: 2229 VFNLYLDKFVVIFIDDILVYSPNPEVHEQHLRKVLQTLREHKLYAKFSKCEFWMSQVTFL 2408
VF YLDKFVV+FIDDIL+YS E HE+HLR L+ LREH+LYAKFSKCEFW+++V FL
Sbjct: 640 VFMEYLDKFVVVFIDDILIYSKTKEEHEEHLRLALEKLREHQLYAKFSKCEFWLTEVKFL 699
Query: 2409 GHVITQEGISVDPAKVEAVTYWTQPKTPTEVRSFLGMAGYYRRFIKDFSRIAGPLTQLTR 2588
GHVI+ G++VDP+ VE+V W QPKT +E+RSFLG+AGYYR FI++FS+IA P+T L +
Sbjct: 700 GHVISSGGVAVDPSNVESVLSWKQPKTVSEIRSFLGLAGYYRGFIENFSKIARPMTCLLQ 759
Query: 2589 KATKFEWTEKCERSFQELKNRLTSAPVLTLLDPNKEFSLYTDASGEGLGAVLMQDRKVVA 2768
K K++WTE C++SFQELK RL +APVL L D K F +Y+DAS GLG VLMQ KVVA
Sbjct: 760 KEVKYKWTEDCKQSFQELKKRLVTAPVLILPDSRKGFQVYSDASRLGLGCVLMQGGKVVA 819
Query: 2769 YISRKLKDHERNYPTHDLELAAIVFALKKWRHYLYRAKYEIFTDHKSLKYLFSQKDLNMR 2948
Y SR+L+ HE NYPTHDLELAA+V ALK WRHYL+ + E++TDHKSLKY+F+Q DLN+R
Sbjct: 820 YASRQLRPHENNYPTHDLELAAVVHALKIWRHYLFGNRTEMYTDHKSLKYIFTQPDLNIR 879
Query: 2949 QRRWMELLEEYRCPINYHPGKANVVADALSRKAK-------------------------- 3050
QRRW+EL+++Y I YHPGKANVVADALSRK+
Sbjct: 880 QRRWLELIKDYDMEIQYHPGKANVVADALSRKSYCNMSKGRHLPWELCQEFEKLNLDIVS 939
Query: 3051 ---ISSLSLTSTLQEDIRSAQKSNKEFQEFKNRVKAKGLEDFRTLEADGSLYFRNRLCVP 3221
+++L TL + +R AQ ++ + QE K ++ +G + G+++ R+CVP
Sbjct: 940 KGFVATLEAQPTLFDQVREAQVNDPDIQEIKKNMR-RGKAIGYVEDEQGTVWLGERICVP 998
Query: 3222 NDTELKRKILEEAHRSKYSMHPGENKMYKDLKQKFWWNGMKREIAEYVAACLTCQRVKAE 3401
++ ELK I++EAH + YS+HPG KMY+DLKQ+FWW ++REIAEYVA C CQRVKAE
Sbjct: 999 DNKELKDTIMKEAHETLYSIHPGSTKMYQDLKQQFWWASIRREIAEYVALCDVCQRVKAE 1058
Query: 3402 HQKSAGLLQPLPFPEWKWDHVTMDFVTGLPRTKGYKDAIWVIVDRLTKVAHFIAINISYP 3581
HQK AGLLQPL PEWKW+ + MDF+TGLPRT D+IWV+VDRLTKVAHFI + +Y
Sbjct: 1059 HQKPAGLLQPLKIPEWKWEEIGMDFITGLPRTSAGHDSIWVVVDRLTKVAHFIPVKTTYT 1118
Query: 3582 LDKLTQIYVDEIVRLHGVPVDIVSDRDPRFASMFWPKFQAAMGTNLSYSTTAHPQTDGQS 3761
+KL ++Y+ +V LHGVP IVSDR +F S FW K Q MGT L++ST HPQTDGQ
Sbjct: 1119 GNKLAELYMARVVCLHGVPKKIVSDRGSQFTSKFWQKLQVEMGTRLNFSTAYHPQTDGQM 1178
Query: 3762 ERTIQTLEDMLRACALDFGNKWVDNLAFAEFAYNNSYHSSIGMAPFEALYGRRCRTPLYW 3941
ER Q LEDMLRAC LDFG W NL +AEF+YNNSY +S+ MAP+EALYGR+CRTPL W
Sbjct: 1179 ERVNQILEDMLRACVLDFGGSWDKNLPYAEFSYNNSYQASLQMAPYEALYGRKCRTPLLW 1238
Query: 3942 DEVGVRSHWRQRNLMPELEEMQKQVKIIQDRLQTAKSRQKSYADNRRRDLEFNVRDRVFL 4121
D+ R + L E +++VKIIQ+RL+ A+SRQKSYADNRRRDL F D V+L
Sbjct: 1239 DQTSERQVFG----TDILREAEEKVKIIQERLRVAQSRQKSYADNRRRDLAFEEGDYVYL 1294
Query: 4122 KLTPHRGKLRYPRRGK 4169
++TP RG R+ +GK
Sbjct: 1295 RVTPLRGVHRFQTKGK 1310
Score = 283 bits (723), Expect(3) = 0.0
Identities = 168/399 (42%), Positives = 226/399 (56%), Gaps = 1/399 (0%)
Frame = +2
Query: 1040 PGHTKDQCPEMQQVTPEMSRKAGRPPIMRGTTEGRNNKPQIKAKVYALDGLPVDTEVEVV 1219
PGH D+CP+ ++V + A P +N P KA V + +VV
Sbjct: 282 PGHYADKCPKPRRV-----KNAPAP--------NNSNAPAPKAHVNHVAAAEAQNAPDVV 328
Query: 1220 EGMIKIFSQLARVLIDPGATHSFVSLHFIKHTPIPPVNMHYQLIVSTPMGVNKITEVKY- 1396
G + S A VL D GATHSF+S F + + +++ L+V+TP N+++ +Y
Sbjct: 329 LGTFPVNSIPASVLFDSGATHSFLSKSFASNHGMEVISLGRPLLVNTPG--NQVSSTQYC 386
Query: 1397 PDCDICVENVVLSGDLIALPLEGYDVILGMDWLSKHYAQLDCRRKLVKFSRPSMPILVFQ 1576
P I +E V LI L + DVILGMDWLS+H +DC + V + + + F
Sbjct: 387 PSATIEIEEVPFPSSLILLESKDLDVILGMDWLSRHRGVIDCANRKVTLTNSNGETVSF- 445
Query: 1577 GKRTKRENPFLSAMKARKLLWKGCQGYLVYLLNKPKEEVKLDIVPVVRELRDVFPEELTT 1756
F+ + K Y +LN +V L +P+V++ DVFPE+L
Sbjct: 446 ---------FVPSPK-----------YHGVILN----QVALQEIPIVQDYPDVFPEDLPG 481
Query: 1757 LPLDREVEFGIELVPDAKPISRTPYRMAXXXXXXXXXXXXXXXXXGYIRPSTSPWGAPVL 1936
+P R++EF I+LVP PI + PYRMA GYIRPSTSPWGAPV+
Sbjct: 482 MPPKRDIEFRIDLVPGTNPIHKRPYRMAANELAEVKRQVDDLLQKGYIRPSTSPWGAPVI 541
Query: 1937 FVKKKDGTLRMCIDYRGLNNVTVKNKYLLPLIDELFDQLRGAGYFSKLDLR*GYYQVRIR 2116
FV+KKD T RMC+DYR LN VT+KNKY LP ID+LFDQL GA FSK+DLR GY+Q+RIR
Sbjct: 542 FVEKKDHTQRMCVDYRALNEVTIKNKYPLPRIDDLFDQLEGATVFSKIDLRSGYHQLRIR 601
Query: 2117 EKDIPMTAFNTRYGHYEFVVMPFELTNAPATFMDLIHSL 2233
E+DIP TAF TRYG +E +M F LTNAPA FM+L++ +
Sbjct: 602 EEDIPKTAFTTRYGLFECTIMSFGLTNAPAFFMNLMNKV 640
Score = 122 bits (307), Expect(3) = 0.0
Identities = 60/114 (52%), Positives = 76/114 (66%)
Frame = +1
Query: 4171 LSPRHIGPFGIIDRIGKVAYRLALPNERIGIHDVFHVSQLKKYHPAPDHVLNDDQLKLQV 4350
L+PR +GPF I+ R G+VAY+L LP GIHDVFHVSQLKK AP + D+++LQ
Sbjct: 1311 LAPRFVGPFKIVSRRGEVAYQLELPPSMAGIHDVFHVSQLKKCLRAPTEEADPDRIELQE 1370
Query: 4351 DLSYEERPTEIIERSVKELRGRQIPMCKVIWKHHGIEEATWETEEYLKKKYPEL 4512
DL+Y E+P I+E S + R R I CKV W +H EEATWE E+ LK +P L
Sbjct: 1371 DLTYVEKPVRILEVSERNTRNRVIRFCKVQWSNHSEEEATWEREDELKSAHPHL 1424
Score = 87.4 bits (215), Expect = 6e-14
Identities = 50/149 (33%), Positives = 80/149 (53%)
Frame = +1
Query: 343 IKAGLFLEQLNDIYDTLKYEDALRVTFAAFRLRGMAMDWWLRASEARTLKNQPWTCNDFQ 522
++AG +L + D ++ + +V+FA+ +L G A +WW + R + +P T +F
Sbjct: 43 VEAGDWLHAVEKKLDLIQCTEQEKVSFASHQLHGPAAEWWDHFRQGRA-EGEPITWQEFM 101
Query: 523 EEFKKEYIPRWVREQREDEFQQLRQGNLTVAQYTAKFNRLAKYCLRLIDTDENKTRQFVK 702
FKK +IP V ++ EF+ L QG+ +V +Y FNRLA+Y + TDE + +F++
Sbjct: 102 AAFKKTHIPTGVVALKKREFRALNQGSRSVTEYLHDFNRLARYAPEDVRTDEERQEKFLE 161
Query: 703 GLRVELQRALAPLPPMGFAAAVEAATRTE 789
GL EL AL F V+ A R E
Sbjct: 162 GLNDELSYALMSTDFRDFQQLVDKAIRQE 190
>emb|CAE05306.2| OSJNBa0056L23.4 [Oryza sativa Japonica Group]
Length = 1785
Score = 782 bits (2020), Expect(3) = 0.0
Identities = 393/682 (57%), Positives = 492/682 (72%), Gaps = 29/682 (4%)
Frame = +3
Query: 2229 VFNLYLDKFVVIFIDDILVYSPNPEVHEQHLRKVLQTLREHKLYAKFSKCEFWMSQVTFL 2408
VF YLDKFVV+FIDDIL+YS + E H+ HLR VL LREH+LYAK SKCEFW+S+V FL
Sbjct: 988 VFMEYLDKFVVVFIDDILIYSQSEEDHQHHLRLVLGKLREHQLYAKLSKCEFWLSEVKFL 1047
Query: 2409 GHVITQEGISVDPAKVEAVTYWTQPKTPTEVRSFLGMAGYYRRFIKDFSRIAGPLTQLTR 2588
GHVI+ +G++VDP V AVT W QPKT T++RSFLG+AGYYRRFI++FS+IA P+TQL +
Sbjct: 1048 GHVISAKGVAVDPETVTAVTDWKQPKTVTQIRSFLGLAGYYRRFIENFSKIARPMTQLLK 1107
Query: 2589 KATKFEWTEKCERSFQELKNRLTSAPVLTLLDPNKEFSLYTDASGEGLGAVLMQDRKVVA 2768
K KF W+ +CE++FQ LK +L S+PVL L D K+F +Y DAS +GLG VLMQD VVA
Sbjct: 1108 KEEKFVWSPQCEKAFQTLKEKLVSSPVLILPDTRKDFMVYCDASRQGLGCVLMQDGHVVA 1167
Query: 2769 YISRKLKDHERNYPTHDLELAAIVFALKKWRHYLYRAKYEIFTDHKSLKYLFSQKDLNMR 2948
Y SR+L+ HE NYPTHDLELAA+V ALK WRHYL + EI+TDHKSLKY+F+Q DLN+R
Sbjct: 1168 YASRQLRPHEGNYPTHDLELAAVVHALKIWRHYLIGNRCEIYTDHKSLKYIFTQSDLNLR 1227
Query: 2949 QRRWMELLEEYRCPINYHPGKANVVADALSRKAKISSLSLTS------------------ 3074
QRRW+EL+++Y I+YHPGKANVVADALSR + ++L++
Sbjct: 1228 QRRWLELIKDYDVGIHYHPGKANVVADALSRNSHCNTLNVRGIPPELNQQMEALNLSIVG 1287
Query: 3075 -----------TLQEDIRSAQKSNKEFQEFKNRVKAKGLEDFRTLEADGSLYFRNRLCVP 3221
TL + IR AQK++ + +K F T + G+L+ NR+CVP
Sbjct: 1288 RGFLAALEAKPTLLDQIREAQKNDPDMHGLLKNMKQGKAAGF-TEDEHGTLWNGNRVCVP 1346
Query: 3222 NDTELKRKILEEAHRSKYSMHPGENKMYKDLKQKFWWNGMKREIAEYVAACLTCQRVKAE 3401
++ ELK+ IL+EAH S YS+HPG KMY DLK+K+WW MKREIAE+VA C CQRVKAE
Sbjct: 1347 DNRELKQLILQEAHESPYSIHPGSTKMYLDLKEKYWWVSMKREIAEFVALCDVCQRVKAE 1406
Query: 3402 HQKSAGLLQPLPFPEWKWDHVTMDFVTGLPRTKGYKDAIWVIVDRLTKVAHFIAINISYP 3581
HQ+ AGLLQPL PEWKWD + MDF+TGLP+T+G D+IWVIVDRLTKVA FI + +Y
Sbjct: 1407 HQRPAGLLQPLQVPEWKWDEIGMDFITGLPKTQGGYDSIWVIVDRLTKVARFIPVKTTYG 1466
Query: 3582 LDKLTQIYVDEIVRLHGVPVDIVSDRDPRFASMFWPKFQAAMGTNLSYSTTAHPQTDGQS 3761
+KL ++Y IV LHGVP IVSDR +F S FW K Q +GT L++ST HPQTDGQ+
Sbjct: 1467 GNKLAELYFARIVSLHGVPKKIVSDRGSQFTSHFWKKLQEELGTRLNFSTAYHPQTDGQT 1526
Query: 3762 ERTIQTLEDMLRACALDFGNKWVDNLAFAEFAYNNSYHSSIGMAPFEALYGRRCRTPLYW 3941
ER Q LEDMLRAC LDFG W +L +AEF+YNNSY +SI MAP+EALYGR+CRTPL W
Sbjct: 1527 ERLNQILEDMLRACVLDFGKTWDKSLPYAEFSYNNSYQASIQMAPYEALYGRKCRTPLLW 1586
Query: 3942 DEVGVRSHWRQRNLMPELEEMQKQVKIIQDRLQTAKSRQKSYADNRRRDLEFNVRDRVFL 4121
D+VG + L E + +V+II+D L+ A+SRQKSYADNRRRDLEF V D V+L
Sbjct: 1587 DQVGESQVFG----TDILREAEAKVRIIRDNLKVAQSRQKSYADNRRRDLEFAVDDFVYL 1642
Query: 4122 KLTPHRGKLRYPRRGKFKSPTY 4187
++TP RG R+ +GK +P Y
Sbjct: 1643 RVTPLRGVHRFQTKGKL-APRY 1663
Score = 301 bits (771), Expect(3) = 0.0
Identities = 171/409 (41%), Positives = 229/409 (55%), Gaps = 3/409 (0%)
Frame = +2
Query: 1016 RLCFKCGKPGHTKDQCPEMQQVTPEMSRKAGRPPIMRGTTEGRNNKPQIKAKVYALDGLP 1195
RLCF C +PGH D+CP+ + R+ G+ P K I+ +V +
Sbjct: 620 RLCFNCFEPGHFADKCPKPR-------RQQGQAP----PRSNNGGKDVIRGRVNHVTAED 668
Query: 1196 VDTEVEVVEGMIKIFSQLARVLIDPGATHSFVSLHFIKHTPIPPVNMHYQLIVSTPMGVN 1375
V T +V+ G + S A +L D GA+HSF+S+ F+ + + L+++TP GV
Sbjct: 669 VLTTPDVIVGTFLVHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGV- 727
Query: 1376 KITEVKY--PDCDICVENVVLSGDLIALPLEGYDVILGMDWLSKHYAQLDCRRKLVKFSR 1549
KY P I ++ + DLI L + DVILGM+WL++ +DC R+ V R
Sbjct: 728 --MTAKYYSPAVPIEIQGIPFPSDLILLDTKNLDVILGMNWLAQFQGVVDCARRTVTLYR 785
Query: 1550 -PSMPILVFQGKRTKRENPFLSAMKARKLLWKGCQGYLVYLLNKPKEEVKLDIVPVVREL 1726
P P++ F + R + ++ L +P+VRE
Sbjct: 786 GPEQPVVFFAPPTSVRSSEL--------------------------HQIGLSEIPIVREF 819
Query: 1727 RDVFPEELTTLPLDREVEFGIELVPDAKPISRTPYRMAXXXXXXXXXXXXXXXXXGYIRP 1906
DVFPEEL +P RE+EF I+L P P+ + PYRMA GYIRP
Sbjct: 820 GDVFPEELPGMPPKREIEFRIDLAPGTTPLYKRPYRMAANELAEVKKQLEELKEKGYIRP 879
Query: 1907 STSPWGAPVLFVKKKDGTLRMCIDYRGLNNVTVKNKYLLPLIDELFDQLRGAGYFSKLDL 2086
STSPWGAPV+FV+KKD T RMC+DYR LN VT+KNKY LP ID+LFDQL+GA FSK+DL
Sbjct: 880 STSPWGAPVIFVEKKDKTKRMCVDYRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDL 939
Query: 2087 R*GYYQVRIREKDIPMTAFNTRYGHYEFVVMPFELTNAPATFMDLIHSL 2233
R GY+Q+RIRE+DIP TAF TRYG YEF VM F LTNAPA FM+L++ +
Sbjct: 940 RSGYHQLRIREEDIPKTAFTTRYGLYEFTVMSFGLTNAPAFFMNLMNKV 988
Score = 114 bits (285), Expect(3) = 0.0
Identities = 54/114 (47%), Positives = 76/114 (66%)
Frame = +1
Query: 4171 LSPRHIGPFGIIDRIGKVAYRLALPNERIGIHDVFHVSQLKKYHPAPDHVLNDDQLKLQV 4350
L+PR++GPF II R G+VAY+L LP +HDVFHVSQLKK P + +Q++++
Sbjct: 1659 LAPRYVGPFRIIARRGEVAYQLELPASLGNVHDVFHVSQLKKCLRVPSEQADSEQIEVRE 1718
Query: 4351 DLSYEERPTEIIERSVKELRGRQIPMCKVIWKHHGIEEATWETEEYLKKKYPEL 4512
DL+Y E+P +I++ + R R I CKV W +H EEATWE E+ LK +P+L
Sbjct: 1719 DLTYVEKPVKILDAMERRTRNRVIRFCKVQWSNHAEEEATWEREDELKAAHPDL 1772
Score = 88.6 bits (218), Expect = 3e-14
Identities = 64/236 (27%), Positives = 106/236 (44%), Gaps = 6/236 (2%)
Frame = +1
Query: 100 DVAVSESSQNRQSEPTREATPRPEQA--THKVIENFMIKMTELLETSMATRRN----EQV 261
+V E +Q S P + P P T+ ++ + + ++ + +N
Sbjct: 292 NVNTGEGNQPEGSNPNHQGNPPPPPPPDTNAILTQILAQQANMMNAFLHHLQNPPQQNAP 351
Query: 262 PVTGADEALERFLKFRPLEFYGDVEQEIKAGLFLEQLNDIYDTLKYEDALRVTFAAFRLR 441
P L FL+ RP F + A +L + DT++ D +VTFAA +L+
Sbjct: 352 PPPPQHSKLAEFLRIRPPTFSSS-NNPVDALDWLHAVGKKLDTVQCSDEEKVTFAAHQLQ 410
Query: 442 GMAMDWWLRASEARTLKNQPWTCNDFQEEFKKEYIPRWVREQREDEFQQLRQGNLTVAQY 621
G A WW +A + QP T F F++ ++P V ++ EF++L+QGN +V +Y
Sbjct: 411 GPASLWWDHF-QATQPEGQPITWTRFTAAFRRTHVPAGVVALKKREFRELKQGNRSVMEY 469
Query: 622 TAKFNRLAKYCLRLIDTDENKTRQFVKGLRVELQRALAPLPPMGFAAAVEAATRTE 789
+FN LA+Y + DE K +F+ G+ EL L F V+ + R E
Sbjct: 470 LHEFNNLARYAPEDVREDEEKQEKFLAGMDPELSVRLVSGDYPDFQRLVDKSIRLE 525
>gb|AAN09860.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1820
Score = 782 bits (2019), Expect(3) = 0.0
Identities = 393/682 (57%), Positives = 492/682 (72%), Gaps = 29/682 (4%)
Frame = +3
Query: 2229 VFNLYLDKFVVIFIDDILVYSPNPEVHEQHLRKVLQTLREHKLYAKFSKCEFWMSQVTFL 2408
VF YLDKFVV+FIDDIL+YS + E H+ HLR VL LREH+LYAK SKCEFW+S+V FL
Sbjct: 1023 VFMEYLDKFVVVFIDDILIYSQSEEDHQHHLRLVLGKLREHQLYAKLSKCEFWLSEVKFL 1082
Query: 2409 GHVITQEGISVDPAKVEAVTYWTQPKTPTEVRSFLGMAGYYRRFIKDFSRIAGPLTQLTR 2588
GHVI+ +G++VDP V AVT W QPKT T+VRSFLG+AGYYRRFI++FS+IA P+TQL +
Sbjct: 1083 GHVISAKGVAVDPETVTAVTDWKQPKTVTQVRSFLGLAGYYRRFIENFSKIARPMTQLLK 1142
Query: 2589 KATKFEWTEKCERSFQELKNRLTSAPVLTLLDPNKEFSLYTDASGEGLGAVLMQDRKVVA 2768
K KF W+ +CE++FQ LK +L S+PVL L D K+F +Y DAS +GLG VLMQD VVA
Sbjct: 1143 KEEKFVWSPQCEKAFQTLKEKLVSSPVLILPDTRKDFMVYCDASRQGLGCVLMQDGHVVA 1202
Query: 2769 YISRKLKDHERNYPTHDLELAAIVFALKKWRHYLYRAKYEIFTDHKSLKYLFSQKDLNMR 2948
Y SR+L+ HE NYPTHDLELAA+V ALK WRHYL + EI+TDHKSLKY+F+Q DLN+R
Sbjct: 1203 YASRQLRPHEGNYPTHDLELAAVVHALKIWRHYLIGNRCEIYTDHKSLKYIFTQSDLNLR 1262
Query: 2949 QRRWMELLEEYRCPINYHPGKANVVADALSRKAKISSLSLTS------------------ 3074
QRRW+EL+++Y I+YHPGKANVVADALSRK+ ++L++
Sbjct: 1263 QRRWLELIKDYDVGIHYHPGKANVVADALSRKSHCNTLNVRGIPPELNQQMEALNLSIVS 1322
Query: 3075 -----------TLQEDIRSAQKSNKEFQEFKNRVKAKGLEDFRTLEADGSLYFRNRLCVP 3221
TL + IR AQK++ + +K F T + G+L+ R+CVP
Sbjct: 1323 RGFLAALEAKPTLLDQIREAQKNDPDMHGLLKNMKQGKAAGF-TEDEHGTLWNGKRVCVP 1381
Query: 3222 NDTELKRKILEEAHRSKYSMHPGENKMYKDLKQKFWWNGMKREIAEYVAACLTCQRVKAE 3401
++ ELK+ IL+EAH S YS+HPG KMY DLK+K+WW MKREIAE+VA C CQRVKAE
Sbjct: 1382 DNRELKQLILQEAHESPYSIHPGSTKMYLDLKEKYWWVSMKREIAEFVALCDVCQRVKAE 1441
Query: 3402 HQKSAGLLQPLPFPEWKWDHVTMDFVTGLPRTKGYKDAIWVIVDRLTKVAHFIAINISYP 3581
HQ+ AGLLQPL PEWKWD + MDF+TGLP+T+G D+IWV+VDRLTKVA FI + +Y
Sbjct: 1442 HQRPAGLLQPLQVPEWKWDEIGMDFITGLPKTQGGYDSIWVVVDRLTKVARFIPVKTTYG 1501
Query: 3582 LDKLTQIYVDEIVRLHGVPVDIVSDRDPRFASMFWPKFQAAMGTNLSYSTTAHPQTDGQS 3761
+KL ++Y IV LHGVP IVSDR +F S FW K Q +GT L++ST HPQTDGQ+
Sbjct: 1502 GNKLAELYFARIVSLHGVPKKIVSDRGSQFTSHFWKKLQEELGTRLNFSTAYHPQTDGQT 1561
Query: 3762 ERTIQTLEDMLRACALDFGNKWVDNLAFAEFAYNNSYHSSIGMAPFEALYGRRCRTPLYW 3941
ER Q LEDMLRAC LDFG W +L +AEF+YNNSY +SI MAP+EALYGR+CRTPL W
Sbjct: 1562 ERLNQILEDMLRACVLDFGKTWDKSLPYAEFSYNNSYQASIQMAPYEALYGRKCRTPLLW 1621
Query: 3942 DEVGVRSHWRQRNLMPELEEMQKQVKIIQDRLQTAKSRQKSYADNRRRDLEFNVRDRVFL 4121
D+VG + L E + +V+II+D L+ A+SRQKSYADNRRRDLEF V D V+L
Sbjct: 1622 DQVGESQVFG----TDILREAEAKVRIIRDNLKVAQSRQKSYADNRRRDLEFAVDDFVYL 1677
Query: 4122 KLTPHRGKLRYPRRGKFKSPTY 4187
++TP RG R+ +GK +P Y
Sbjct: 1678 RVTPLRGVHRFQTKGKL-APRY 1698
Score = 299 bits (766), Expect(3) = 0.0
Identities = 170/409 (41%), Positives = 228/409 (55%), Gaps = 3/409 (0%)
Frame = +2
Query: 1016 RLCFKCGKPGHTKDQCPEMQQVTPEMSRKAGRPPIMRGTTEGRNNKPQIKAKVYALDGLP 1195
RLCF C +PGH D+CP+ + R+ G+ P K I+ +V +
Sbjct: 655 RLCFNCFEPGHFADKCPKPR-------RQQGQAP----PRSNNGGKDVIRGRVNHVTAED 703
Query: 1196 VDTEVEVVEGMIKIFSQLARVLIDPGATHSFVSLHFIKHTPIPPVNMHYQLIVSTPMGVN 1375
V T +V+ G + S A +L D GA+HSF+S+ F+ + + L+ +TP GV
Sbjct: 704 VLTTPDVIVGTFLVHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLTTTPGGV- 762
Query: 1376 KITEVKY--PDCDICVENVVLSGDLIALPLEGYDVILGMDWLSKHYAQLDCRRKLVK-FS 1546
KY P I ++ + DLI L + DVILGM+WL++ +DC R+ V +
Sbjct: 763 --MTAKYYSPAVPIEIQGIPFPSDLILLDTKNLDVILGMNWLAQFQGVVDCARRTVTLYQ 820
Query: 1547 RPSMPILVFQGKRTKRENPFLSAMKARKLLWKGCQGYLVYLLNKPKEEVKLDIVPVVREL 1726
P P++ F + R + ++ L +P+VRE
Sbjct: 821 GPEQPVVFFAPPTSIRSSEL--------------------------HQIGLSEIPIVREF 854
Query: 1727 RDVFPEELTTLPLDREVEFGIELVPDAKPISRTPYRMAXXXXXXXXXXXXXXXXXGYIRP 1906
DVFPEEL +P RE+EF I+L P P+ + PYRMA GYIRP
Sbjct: 855 GDVFPEELPGMPPKREIEFRIDLAPGTTPLHKRPYRMAANELAEVKKQLEELKEKGYIRP 914
Query: 1907 STSPWGAPVLFVKKKDGTLRMCIDYRGLNNVTVKNKYLLPLIDELFDQLRGAGYFSKLDL 2086
STSPWGAPV+FV+KKD T RMC+DYR LN VT+KNKY LP ID+LFDQL+GA FSK+DL
Sbjct: 915 STSPWGAPVIFVEKKDKTKRMCVDYRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDL 974
Query: 2087 R*GYYQVRIREKDIPMTAFNTRYGHYEFVVMPFELTNAPATFMDLIHSL 2233
R GY+Q+RIRE+DIP TAF TRYG YEF VM F LTNAPA FM+L++ +
Sbjct: 975 RSGYHQLRIREEDIPKTAFTTRYGLYEFTVMSFGLTNAPAFFMNLMNKV 1023
Score = 113 bits (283), Expect(3) = 0.0
Identities = 54/114 (47%), Positives = 75/114 (65%)
Frame = +1
Query: 4171 LSPRHIGPFGIIDRIGKVAYRLALPNERIGIHDVFHVSQLKKYHPAPDHVLNDDQLKLQV 4350
L+PR++GPF I+ R G+VAY+L LP +HDVFHVSQLKK P + +Q++++
Sbjct: 1694 LAPRYVGPFRIVARRGEVAYQLELPASLGNVHDVFHVSQLKKCLRVPSEQADSEQIEVRE 1753
Query: 4351 DLSYEERPTEIIERSVKELRGRQIPMCKVIWKHHGIEEATWETEEYLKKKYPEL 4512
DL+Y ERP +I++ + R R I CKV W +H EEATWE E+ LK +P L
Sbjct: 1754 DLTYVERPVKILDTMERRTRNRVIRFCKVQWSNHAEEEATWEREDELKAAHPGL 1807
Score = 84.7 bits (208), Expect = 4e-13
Identities = 62/230 (26%), Positives = 103/230 (44%), Gaps = 6/230 (2%)
Frame = +1
Query: 118 SSQNRQSEPTREATPRPEQA--THKVIENFMIKMTELLETSMATRRN----EQVPVTGAD 279
S+ N Q P P P T+ ++ + + ++ + +N P
Sbjct: 335 SNHNHQGNPPPPPPPPPPPPPDTNAILTQILAQQANMMTAFLHHLQNPPQLNAPPPPPQH 394
Query: 280 EALERFLKFRPLEFYGDVEQEIKAGLFLEQLNDIYDTLKYEDALRVTFAAFRLRGMAMDW 459
L FL+ RP F+ + A +L + DT++ D +V FAA +L+G A W
Sbjct: 395 SKLAEFLRIRPPTFFSS-NNPVDALDWLHAVGKKLDTVQCSDEEKVIFAAHQLQGPASLW 453
Query: 460 WLRASEARTLKNQPWTCNDFQEEFKKEYIPRWVREQREDEFQQLRQGNLTVAQYTAKFNR 639
W +A + QP T F F++ ++P V ++ EF++L+QGN +V +Y +FN
Sbjct: 454 WDHF-QATQPEGQPITWARFTAAFRRTHVPAGVVALKKREFRELKQGNRSVMEYLHEFNN 512
Query: 640 LAKYCLRLIDTDENKTRQFVKGLRVELQRALAPLPPMGFAAAVEAATRTE 789
LA+Y + DE K +F+ G+ EL L F V+ + R E
Sbjct: 513 LARYAPEDVREDEEKQEKFLAGMDPELSVRLVSGDYPDFQRLVDKSIRLE 562
>gb|ABG65969.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1502
Score = 782 bits (2019), Expect(3) = 0.0
Identities = 393/682 (57%), Positives = 492/682 (72%), Gaps = 29/682 (4%)
Frame = +3
Query: 2229 VFNLYLDKFVVIFIDDILVYSPNPEVHEQHLRKVLQTLREHKLYAKFSKCEFWMSQVTFL 2408
VF YLDKFVV+FIDDIL+YS + E H+ HLR VL LREH+LYAK SKCEFW+S+V FL
Sbjct: 705 VFMEYLDKFVVVFIDDILIYSQSEEDHQHHLRLVLGKLREHQLYAKLSKCEFWLSEVKFL 764
Query: 2409 GHVITQEGISVDPAKVEAVTYWTQPKTPTEVRSFLGMAGYYRRFIKDFSRIAGPLTQLTR 2588
GHVI+ +G++VDP V AVT W QPKT T+VRSFLG+AGYYRRFI++FS+IA P+TQL +
Sbjct: 765 GHVISAKGVAVDPETVTAVTDWKQPKTVTQVRSFLGLAGYYRRFIENFSKIARPMTQLLK 824
Query: 2589 KATKFEWTEKCERSFQELKNRLTSAPVLTLLDPNKEFSLYTDASGEGLGAVLMQDRKVVA 2768
K KF W+ +CE++FQ LK +L S+PVL L D K+F +Y DAS +GLG VLMQD VVA
Sbjct: 825 KEEKFVWSPQCEKAFQTLKEKLVSSPVLILPDTRKDFMVYCDASRQGLGCVLMQDGHVVA 884
Query: 2769 YISRKLKDHERNYPTHDLELAAIVFALKKWRHYLYRAKYEIFTDHKSLKYLFSQKDLNMR 2948
Y SR+L+ HE NYPTHDLELAA+V ALK WRHYL + EI+TDHKSLKY+F+Q DLN+R
Sbjct: 885 YASRQLRPHEGNYPTHDLELAAVVHALKIWRHYLIGNRCEIYTDHKSLKYIFTQSDLNLR 944
Query: 2949 QRRWMELLEEYRCPINYHPGKANVVADALSRKAKISSLSLTS------------------ 3074
QRRW+EL+++Y I+YHPGKANVVADALSRK+ ++L++
Sbjct: 945 QRRWLELIKDYDVGIHYHPGKANVVADALSRKSHCNTLNVRGIPPELNQQMEALNLSIVS 1004
Query: 3075 -----------TLQEDIRSAQKSNKEFQEFKNRVKAKGLEDFRTLEADGSLYFRNRLCVP 3221
TL + IR AQK++ + +K F T + G+L+ R+CVP
Sbjct: 1005 RGFLAALEAKPTLLDQIREAQKNDPDMHGLLKNMKQGKAAGF-TEDEHGTLWNGKRVCVP 1063
Query: 3222 NDTELKRKILEEAHRSKYSMHPGENKMYKDLKQKFWWNGMKREIAEYVAACLTCQRVKAE 3401
++ ELK+ IL+EAH S YS+HPG KMY DLK+K+WW MKREIAE+VA C CQRVKAE
Sbjct: 1064 DNRELKQLILQEAHESPYSIHPGSTKMYLDLKEKYWWVSMKREIAEFVALCDVCQRVKAE 1123
Query: 3402 HQKSAGLLQPLPFPEWKWDHVTMDFVTGLPRTKGYKDAIWVIVDRLTKVAHFIAINISYP 3581
HQ+ AGLLQPL PEWKWD + MDF+TGLP+T+G D+IWV+VDRLTKVA FI + +Y
Sbjct: 1124 HQRPAGLLQPLQVPEWKWDEIGMDFITGLPKTQGGYDSIWVVVDRLTKVARFIPVKTTYG 1183
Query: 3582 LDKLTQIYVDEIVRLHGVPVDIVSDRDPRFASMFWPKFQAAMGTNLSYSTTAHPQTDGQS 3761
+KL ++Y IV LHGVP IVSDR +F S FW K Q +GT L++ST HPQTDGQ+
Sbjct: 1184 GNKLAELYFARIVSLHGVPKKIVSDRGSQFTSHFWKKLQEELGTRLNFSTAYHPQTDGQT 1243
Query: 3762 ERTIQTLEDMLRACALDFGNKWVDNLAFAEFAYNNSYHSSIGMAPFEALYGRRCRTPLYW 3941
ER Q LEDMLRAC LDFG W +L +AEF+YNNSY +SI MAP+EALYGR+CRTPL W
Sbjct: 1244 ERLNQILEDMLRACVLDFGKTWDKSLPYAEFSYNNSYQASIQMAPYEALYGRKCRTPLLW 1303
Query: 3942 DEVGVRSHWRQRNLMPELEEMQKQVKIIQDRLQTAKSRQKSYADNRRRDLEFNVRDRVFL 4121
D+VG + L E + +V+II+D L+ A+SRQKSYADNRRRDLEF V D V+L
Sbjct: 1304 DQVGESQVFG----TDILREAEAKVRIIRDNLKVAQSRQKSYADNRRRDLEFAVDDFVYL 1359
Query: 4122 KLTPHRGKLRYPRRGKFKSPTY 4187
++TP RG R+ +GK +P Y
Sbjct: 1360 RVTPLRGVHRFQTKGKL-APRY 1380
Score = 299 bits (766), Expect(3) = 0.0
Identities = 170/409 (41%), Positives = 228/409 (55%), Gaps = 3/409 (0%)
Frame = +2
Query: 1016 RLCFKCGKPGHTKDQCPEMQQVTPEMSRKAGRPPIMRGTTEGRNNKPQIKAKVYALDGLP 1195
RLCF C +PGH D+CP+ + R+ G+ P K I+ +V +
Sbjct: 337 RLCFNCFEPGHFADKCPKPR-------RQQGQAP----PRSNNGGKDVIRGRVNHVTAED 385
Query: 1196 VDTEVEVVEGMIKIFSQLARVLIDPGATHSFVSLHFIKHTPIPPVNMHYQLIVSTPMGVN 1375
V T +V+ G + S A +L D GA+HSF+S+ F+ + + L+ +TP GV
Sbjct: 386 VLTTPDVIVGTFLVHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLTTTPGGV- 444
Query: 1376 KITEVKY--PDCDICVENVVLSGDLIALPLEGYDVILGMDWLSKHYAQLDCRRKLVK-FS 1546
KY P I ++ + DLI L + DVILGM+WL++ +DC R+ V +
Sbjct: 445 --MTAKYYSPAVPIEIQGIPFPSDLILLDTKNLDVILGMNWLAQFQGVVDCARRTVTLYQ 502
Query: 1547 RPSMPILVFQGKRTKRENPFLSAMKARKLLWKGCQGYLVYLLNKPKEEVKLDIVPVVREL 1726
P P++ F + R + ++ L +P+VRE
Sbjct: 503 GPEQPVVFFAPPTSIRSSEL--------------------------HQIGLSEIPIVREF 536
Query: 1727 RDVFPEELTTLPLDREVEFGIELVPDAKPISRTPYRMAXXXXXXXXXXXXXXXXXGYIRP 1906
DVFPEEL +P RE+EF I+L P P+ + PYRMA GYIRP
Sbjct: 537 GDVFPEELPGMPPKREIEFRIDLAPGTTPLHKRPYRMAANELAEVKKQLEELKEKGYIRP 596
Query: 1907 STSPWGAPVLFVKKKDGTLRMCIDYRGLNNVTVKNKYLLPLIDELFDQLRGAGYFSKLDL 2086
STSPWGAPV+FV+KKD T RMC+DYR LN VT+KNKY LP ID+LFDQL+GA FSK+DL
Sbjct: 597 STSPWGAPVIFVEKKDKTKRMCVDYRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDL 656
Query: 2087 R*GYYQVRIREKDIPMTAFNTRYGHYEFVVMPFELTNAPATFMDLIHSL 2233
R GY+Q+RIRE+DIP TAF TRYG YEF VM F LTNAPA FM+L++ +
Sbjct: 657 RSGYHQLRIREEDIPKTAFTTRYGLYEFTVMSFGLTNAPAFFMNLMNKV 705
Score = 113 bits (283), Expect(3) = 0.0
Identities = 54/114 (47%), Positives = 75/114 (65%)
Frame = +1
Query: 4171 LSPRHIGPFGIIDRIGKVAYRLALPNERIGIHDVFHVSQLKKYHPAPDHVLNDDQLKLQV 4350
L+PR++GPF I+ R G+VAY+L LP +HDVFHVSQLKK P + +Q++++
Sbjct: 1376 LAPRYVGPFRIVARRGEVAYQLELPASLGNVHDVFHVSQLKKCLRVPSEQADSEQIEVRE 1435
Query: 4351 DLSYEERPTEIIERSVKELRGRQIPMCKVIWKHHGIEEATWETEEYLKKKYPEL 4512
DL+Y ERP +I++ + R R I CKV W +H EEATWE E+ LK +P L
Sbjct: 1436 DLTYVERPVKILDTMERRTRNRVIRFCKVQWSNHAEEEATWEREDELKAAHPGL 1489
Score = 84.7 bits (208), Expect = 4e-13
Identities = 62/230 (26%), Positives = 103/230 (44%), Gaps = 6/230 (2%)
Frame = +1
Query: 118 SSQNRQSEPTREATPRPEQA--THKVIENFMIKMTELLETSMATRRN----EQVPVTGAD 279
S+ N Q P P P T+ ++ + + ++ + +N P
Sbjct: 17 SNHNHQGNPPPPPPPPPPPPPDTNAILTQILAQQANMMTAFLHHLQNPPQLNAPPPPPQH 76
Query: 280 EALERFLKFRPLEFYGDVEQEIKAGLFLEQLNDIYDTLKYEDALRVTFAAFRLRGMAMDW 459
L FL+ RP F+ + A +L + DT++ D +V FAA +L+G A W
Sbjct: 77 SKLAEFLRIRPPTFFSS-NNPVDALDWLHAVGKKLDTVQCSDEEKVIFAAHQLQGPASLW 135
Query: 460 WLRASEARTLKNQPWTCNDFQEEFKKEYIPRWVREQREDEFQQLRQGNLTVAQYTAKFNR 639
W +A + QP T F F++ ++P V ++ EF++L+QGN +V +Y +FN
Sbjct: 136 WDHF-QATQPEGQPITWARFTAAFRRTHVPAGVVALKKREFRELKQGNRSVMEYLHEFNN 194
Query: 640 LAKYCLRLIDTDENKTRQFVKGLRVELQRALAPLPPMGFAAAVEAATRTE 789
LA+Y + DE K +F+ G+ EL L F V+ + R E
Sbjct: 195 LARYAPEDVREDEEKQEKFLAGMDPELSVRLVSGDYPDFQRLVDKSIRLE 244
>gb|ABF95991.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1748
Score = 780 bits (2015), Expect(3) = 0.0
Identities = 392/682 (57%), Positives = 492/682 (72%), Gaps = 29/682 (4%)
Frame = +3
Query: 2229 VFNLYLDKFVVIFIDDILVYSPNPEVHEQHLRKVLQTLREHKLYAKFSKCEFWMSQVTFL 2408
VF YLDKFVV+FIDDIL+YS + E H+ HLR VL LREH+LYAK SKCEFW+S+V FL
Sbjct: 951 VFMEYLDKFVVVFIDDILIYSQSEEDHQHHLRLVLGKLREHQLYAKLSKCEFWLSEVKFL 1010
Query: 2409 GHVITQEGISVDPAKVEAVTYWTQPKTPTEVRSFLGMAGYYRRFIKDFSRIAGPLTQLTR 2588
GHVI+ +G++VDP V AVT W QPKT T+VRSFLG+AGYYRRFI++FS+IA P+TQL +
Sbjct: 1011 GHVISAKGVAVDPETVTAVTDWKQPKTVTQVRSFLGLAGYYRRFIENFSKIARPMTQLLK 1070
Query: 2589 KATKFEWTEKCERSFQELKNRLTSAPVLTLLDPNKEFSLYTDASGEGLGAVLMQDRKVVA 2768
K KF W+ +CE++FQ LK +L S+PVL L D K+F +Y DAS +GLG +LMQD VVA
Sbjct: 1071 KEEKFVWSPQCEKAFQTLKEKLVSSPVLILPDTRKDFMVYCDASRQGLGCMLMQDGHVVA 1130
Query: 2769 YISRKLKDHERNYPTHDLELAAIVFALKKWRHYLYRAKYEIFTDHKSLKYLFSQKDLNMR 2948
Y SR+L+ HE NYPTHDLELAA+V ALK WRHYL + EI+TDHKSLKY+F+Q DLN+R
Sbjct: 1131 YASRQLRPHEGNYPTHDLELAAVVHALKIWRHYLICNRCEIYTDHKSLKYIFTQSDLNLR 1190
Query: 2949 QRRWMELLEEYRCPINYHPGKANVVADALSRKAK-------------------------- 3050
QRRW+EL+++Y I+YHPGKANVVADALSRK+
Sbjct: 1191 QRRWLELIKDYDVGIHYHPGKANVVADALSRKSHCNTLTARGIPPELNQQMEALNLSIVS 1250
Query: 3051 ---ISSLSLTSTLQEDIRSAQKSNKEFQEFKNRVKAKGLEDFRTLEADGSLYFRNRLCVP 3221
+++L TL + IR AQK++ + +K F T + G+L+ NR+CVP
Sbjct: 1251 RGFLAALEAKPTLLDQIREAQKNDPDMHGLLKNMKQGKAVGF-TEDEHGTLWNGNRVCVP 1309
Query: 3222 NDTELKRKILEEAHRSKYSMHPGENKMYKDLKQKFWWNGMKREIAEYVAACLTCQRVKAE 3401
++ ELK+ IL+EAH+S YS+HPG KMY DLK+K+WW MKREIAE+VA C CQRVKAE
Sbjct: 1310 DNRELKQLILQEAHKSPYSIHPGSTKMYLDLKEKYWWVSMKREIAEFVALCDVCQRVKAE 1369
Query: 3402 HQKSAGLLQPLPFPEWKWDHVTMDFVTGLPRTKGYKDAIWVIVDRLTKVAHFIAINISYP 3581
HQ+ AGLLQPL PEWKWD + MDF+TGLP+T+G D+IWV+VDRLTKVA FI + +Y
Sbjct: 1370 HQRPAGLLQPLQVPEWKWDEIGMDFITGLPKTQGGYDSIWVVVDRLTKVARFIPVKTTYG 1429
Query: 3582 LDKLTQIYVDEIVRLHGVPVDIVSDRDPRFASMFWPKFQAAMGTNLSYSTTAHPQTDGQS 3761
+KL ++Y IV LHGVP IVSDR +F S FW K Q +GT L++ST HPQTDGQ+
Sbjct: 1430 GNKLAELYFARIVSLHGVPKKIVSDRGSQFTSHFWKKLQEELGTRLNFSTAYHPQTDGQT 1489
Query: 3762 ERTIQTLEDMLRACALDFGNKWVDNLAFAEFAYNNSYHSSIGMAPFEALYGRRCRTPLYW 3941
ER Q LEDMLRAC LDFG W +L +AEF+YNNSY +SI MAP+EALYGR+CRTPL W
Sbjct: 1490 ERLNQILEDMLRACVLDFGKTWDKSLPYAEFSYNNSYQASIQMAPYEALYGRKCRTPLLW 1549
Query: 3942 DEVGVRSHWRQRNLMPELEEMQKQVKIIQDRLQTAKSRQKSYADNRRRDLEFNVRDRVFL 4121
D+VG + L E + +V+II+D L+ A+SRQKSYADNRRRDLEF V D V+L
Sbjct: 1550 DQVGESQVFG----TDILREAEAKVRIIRDNLKVAQSRQKSYADNRRRDLEFAVGDFVYL 1605
Query: 4122 KLTPHRGKLRYPRRGKFKSPTY 4187
++ P RG R+ +GK +P Y
Sbjct: 1606 RVMPLRGVHRFQTKGKL-APRY 1626
Score = 301 bits (770), Expect(3) = 0.0
Identities = 172/409 (42%), Positives = 229/409 (55%), Gaps = 3/409 (0%)
Frame = +2
Query: 1016 RLCFKCGKPGHTKDQCPEMQQVTPEMSRKAGRPPIMRGTTEGRNNKPQIKAKVYALDGLP 1195
RLCF C +PGH D+CP+ + R+ G+ P K I+ +V +
Sbjct: 583 RLCFNCFEPGHFADKCPKPR-------RQQGQAP----PRPNNGGKDVIRGRVNHVTAED 631
Query: 1196 VDTEVEVVEGMIKIFSQLARVLIDPGATHSFVSLHFIKHTPIPPVNMHYQLIVSTPMGVN 1375
V T +V+ G I S A +L D GA+HSF+S+ F+ + + L+++TP GV
Sbjct: 632 VLTTPDVIVGTFLIHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGV- 690
Query: 1376 KITEVKY--PDCDICVENVVLSGDLIALPLEGYDVILGMDWLSKHYAQLDCRRKLVKFSR 1549
KY P I ++ + DLI L + DVILGM+WL++ +DC R+ V R
Sbjct: 691 --MTAKYYSPAVPIEIQGIPFPSDLILLDTKNLDVILGMNWLAQFQGVVDCARRTVTLYR 748
Query: 1550 -PSMPILVFQGKRTKRENPFLSAMKARKLLWKGCQGYLVYLLNKPKEEVKLDIVPVVREL 1726
P P++ F + R + ++ L +P+VRE
Sbjct: 749 GPEQPVVFFAPPTSVRSSEL--------------------------HQIGLAEIPIVREF 782
Query: 1727 RDVFPEELTTLPLDREVEFGIELVPDAKPISRTPYRMAXXXXXXXXXXXXXXXXXGYIRP 1906
DVFPEEL +P RE+EF I+L P P+ + PYRMA GYIRP
Sbjct: 783 GDVFPEELPGMPPKREIEFRIDLAPGTTPLHKRPYRMAANELAEVKKQLEELKEKGYIRP 842
Query: 1907 STSPWGAPVLFVKKKDGTLRMCIDYRGLNNVTVKNKYLLPLIDELFDQLRGAGYFSKLDL 2086
STSPWGAPV+FV+KKD T RMC+DYR LN VT+KNKY LP ID+LFDQL+GA FSK+DL
Sbjct: 843 STSPWGAPVIFVEKKDKTKRMCVDYRALNEVTIKNKYPLPRIDDLFDQLKGATIFSKIDL 902
Query: 2087 R*GYYQVRIREKDIPMTAFNTRYGHYEFVVMPFELTNAPATFMDLIHSL 2233
R GY+Q+RIRE+DIP TAF TRYG YEF VM F LTNAPA FM+L++ +
Sbjct: 903 RSGYHQLRIREEDIPKTAFTTRYGLYEFTVMSFGLTNAPAFFMNLMNKV 951
Score = 114 bits (285), Expect(3) = 0.0
Identities = 54/114 (47%), Positives = 76/114 (66%)
Frame = +1
Query: 4171 LSPRHIGPFGIIDRIGKVAYRLALPNERIGIHDVFHVSQLKKYHPAPDHVLNDDQLKLQV 4350
L+PR++GP+ II R G+VAY+L LP +HDVFHVSQLKK P + +Q++++
Sbjct: 1622 LAPRYVGPYRIIARRGEVAYQLELPASLGNVHDVFHVSQLKKCLRVPSEQADSEQIEVRE 1681
Query: 4351 DLSYEERPTEIIERSVKELRGRQIPMCKVIWKHHGIEEATWETEEYLKKKYPEL 4512
DL+Y ERP +I++ + R R I CKV W +H EEATWE E+ LK +P+L
Sbjct: 1682 DLTYVERPVKILDTMERRTRNRVIRFCKVQWSNHAEEEATWEREDELKAAHPDL 1735
Score = 83.2 bits (204), Expect = 1e-12
Identities = 64/230 (27%), Positives = 101/230 (43%), Gaps = 6/230 (2%)
Frame = +1
Query: 118 SSQNRQSEPTREATPRPEQA--THKVIENFMIK----MTELLETSMATRRNEQVPVTGAD 279
S+ N Q P P P T+ ++ + + MT L + P
Sbjct: 261 SNHNHQGNPPPPPPPPPPPPPDTNAILTQILAQQANMMTAFLHHLQNPPQQNAPPPPPQH 320
Query: 280 EALERFLKFRPLEFYGDVEQEIKAGLFLEQLNDIYDTLKYEDALRVTFAAFRLRGMAMDW 459
L FL+ RP F + A +L + DT++ D +V FAA +L+G A W
Sbjct: 321 SKLAEFLRIRPPTFSSS-NNPVDALDWLHAVGKKLDTVQCSDEEKVIFAAHQLQGPASLW 379
Query: 460 WLRASEARTLKNQPWTCNDFQEEFKKEYIPRWVREQREDEFQQLRQGNLTVAQYTAKFNR 639
W +A + QP T F F++ ++P V ++ EF++L+QGN +V +Y +FN
Sbjct: 380 WDHF-QATQPEGQPITWARFTAAFRRTHVPAGVVALKKREFRELKQGNRSVMEYLHEFNN 438
Query: 640 LAKYCLRLIDTDENKTRQFVKGLRVELQRALAPLPPMGFAAAVEAATRTE 789
LA+Y + DE K +F+ G+ EL L F V+ + R E
Sbjct: 439 LARYAPEDVREDEEKQEKFLAGMDPELSVRLVSGDYPDFQRLVDKSIRLE 488
>gb|AAU44125.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1474
Score = 780 bits (2015), Expect(3) = 0.0
Identities = 393/682 (57%), Positives = 491/682 (71%), Gaps = 29/682 (4%)
Frame = +3
Query: 2229 VFNLYLDKFVVIFIDDILVYSPNPEVHEQHLRKVLQTLREHKLYAKFSKCEFWMSQVTFL 2408
VF YLDKFVV+FIDDIL+YS + E H+ HLR VL LREH+LYAK SKCEFW+S+V FL
Sbjct: 677 VFMEYLDKFVVVFIDDILIYSQSEEDHQHHLRLVLGKLREHQLYAKLSKCEFWLSEVKFL 736
Query: 2409 GHVITQEGISVDPAKVEAVTYWTQPKTPTEVRSFLGMAGYYRRFIKDFSRIAGPLTQLTR 2588
GHVI+ +G++VDP V AVT W QPKT T+VRSFLG+AGYYRRFI++FS+IA P+TQL +
Sbjct: 737 GHVISAKGVAVDPETVTAVTDWKQPKTVTQVRSFLGLAGYYRRFIENFSKIARPMTQLLK 796
Query: 2589 KATKFEWTEKCERSFQELKNRLTSAPVLTLLDPNKEFSLYTDASGEGLGAVLMQDRKVVA 2768
K KF W+ +CE++FQ LK +L S+PVL L D K+F +Y DAS +GLG VLMQD VVA
Sbjct: 797 KEEKFMWSPQCEKAFQTLKEKLVSSPVLILPDTRKDFMVYCDASRQGLGCVLMQDGHVVA 856
Query: 2769 YISRKLKDHERNYPTHDLELAAIVFALKKWRHYLYRAKYEIFTDHKSLKYLFSQKDLNMR 2948
Y SR+L+ HE NYPTHDLELAA+V ALK WRHYL EI+TDHKSLKY+F+Q DLN+R
Sbjct: 857 YASRQLRPHEGNYPTHDLELAAVVHALKIWRHYLIGNHCEIYTDHKSLKYIFTQSDLNLR 916
Query: 2949 QRRWMELLEEYRCPINYHPGKANVVADALSRKAKISSLSLTS------------------ 3074
QRRW+EL+++Y I+YHPGKANVVADALSRK+ ++L++
Sbjct: 917 QRRWLELIKDYDVGIHYHPGKANVVADALSRKSHCNTLNVRGIPPELNQQMEALNLSIVS 976
Query: 3075 -----------TLQEDIRSAQKSNKEFQEFKNRVKAKGLEDFRTLEADGSLYFRNRLCVP 3221
TL + IR AQK++ + +K F T + G+L+ NR+CVP
Sbjct: 977 RGFLAALEAKPTLLDQIREAQKNDPDMHGLLKNMKQGKAAGF-TEDEHGTLWNGNRVCVP 1035
Query: 3222 NDTELKRKILEEAHRSKYSMHPGENKMYKDLKQKFWWNGMKREIAEYVAACLTCQRVKAE 3401
+ ELK+ IL+EAH S+YS+HPG KMY DLK+K+WW MKREIAE+VA C CQRVKAE
Sbjct: 1036 DVRELKQLILQEAHESRYSIHPGSTKMYLDLKEKYWWVSMKREIAEFVALCDVCQRVKAE 1095
Query: 3402 HQKSAGLLQPLPFPEWKWDHVTMDFVTGLPRTKGYKDAIWVIVDRLTKVAHFIAINISYP 3581
HQ+ AGLLQPL PEWKWD + MDF+TGLP+T+G D+IWV+VDRLTKVA FI + +Y
Sbjct: 1096 HQRPAGLLQPLQVPEWKWDEIGMDFITGLPKTQGGYDSIWVVVDRLTKVARFIPVKTTYG 1155
Query: 3582 LDKLTQIYVDEIVRLHGVPVDIVSDRDPRFASMFWPKFQAAMGTNLSYSTTAHPQTDGQS 3761
+KL ++Y IV LHGVP IVSDR +F S FW K Q +GT L++ST HPQTDGQ+
Sbjct: 1156 GNKLAELYFARIVSLHGVPKKIVSDRGSQFTSHFWKKLQEELGTRLNFSTAYHPQTDGQT 1215
Query: 3762 ERTIQTLEDMLRACALDFGNKWVDNLAFAEFAYNNSYHSSIGMAPFEALYGRRCRTPLYW 3941
ER Q LEDMLRAC LDFG W +L +AEF+YNNSY +SI MAP+EALYGR+CRTPL W
Sbjct: 1216 ERLNQILEDMLRACVLDFGKTWDKSLPYAEFSYNNSYQASIQMAPYEALYGRKCRTPLMW 1275
Query: 3942 DEVGVRSHWRQRNLMPELEEMQKQVKIIQDRLQTAKSRQKSYADNRRRDLEFNVRDRVFL 4121
D+VG + L E + +V+ I+D L+ A+SRQKSYADNRRRDLEF V D V+L
Sbjct: 1276 DQVGESQVFG----TDILREAEAKVRTIRDNLKVAQSRQKSYADNRRRDLEFAVDDFVYL 1331
Query: 4122 KLTPHRGKLRYPRRGKFKSPTY 4187
++TP RG R+ +GK +P Y
Sbjct: 1332 RVTPLRGVHRFRTKGKL-APRY 1352
Score = 304 bits (778), Expect(3) = 0.0
Identities = 178/450 (39%), Positives = 242/450 (53%), Gaps = 3/450 (0%)
Frame = +2
Query: 893 SRGEQRTGNEGRPTLIPGGSHRICTCYGRSGHVAEMCYRKLRLCFKCGKPGHTKDQCPEM 1072
S +Q+ + RP +PG R RLCF C +PGH D+CP+
Sbjct: 281 SSQQQQPRSAPRPQFVPGQGRRDAQ-------------GPQRLCFNCFEPGHFADKCPKP 327
Query: 1073 QQVTPEMSRKAGRPPIMRGTTEGRNNKPQIKAKVYALDGLPVDTEVEVVEGMIKIFSQLA 1252
+ R+ G+ P K ++ +V + V T +V+ G I S A
Sbjct: 328 R-------RQQGQAP----PRPNNGGKDVVRGRVNHVTAEDVLTTPDVIVGTFPIHSIPA 376
Query: 1253 RVLIDPGATHSFVSLHFIKHTPIPPVNMHYQLIVSTPMGVNKITEVKY--PDCDICVENV 1426
+L D GA+HSF+S+ F+ + + L+++TP GV KY P I ++ +
Sbjct: 377 TILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGV---MTAKYYSPAVPIEIQGI 433
Query: 1427 VLSGDLIALPLEGYDVILGMDWLSKHYAQLDCRRKLVKFSR-PSMPILVFQGKRTKRENP 1603
DLI L + DVILGM+WL++ +DC R+ V R P P++ F + R +
Sbjct: 434 PFPSDLILLDTKNLDVILGMNWLAQFQGVVDCARRTVTLYRGPERPVVFFAPPTSVRSSE 493
Query: 1604 FLSAMKARKLLWKGCQGYLVYLLNKPKEEVKLDIVPVVRELRDVFPEELTTLPLDREVEF 1783
+++L +P+VRE DVFPEEL +P RE+EF
Sbjct: 494 L--------------------------HQIELSEIPIVREFGDVFPEELPGMPPKREIEF 527
Query: 1784 GIELVPDAKPISRTPYRMAXXXXXXXXXXXXXXXXXGYIRPSTSPWGAPVLFVKKKDGTL 1963
I+L P P+ + PYRMA GYIRPSTSPWGAPV+FV+KKD T+
Sbjct: 528 RIDLAPGTAPLYKRPYRMAANELAEVKKQLEELKEKGYIRPSTSPWGAPVIFVEKKDKTM 587
Query: 1964 RMCIDYRGLNNVTVKNKYLLPLIDELFDQLRGAGYFSKLDLR*GYYQVRIREKDIPMTAF 2143
RMC+DYR LN VT+KNKY LP ID+LFDQL+GA FSK+DLR GY+Q+RIRE+DIP TAF
Sbjct: 588 RMCVDYRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAF 647
Query: 2144 NTRYGHYEFVVMPFELTNAPATFMDLIHSL 2233
TRYG YEF VM F LTNAPA FM+L++ +
Sbjct: 648 TTRYGLYEFTVMSFGLTNAPAFFMNLMNKV 677
Score = 81.3 bits (199), Expect(3) = 0.0
Identities = 61/230 (26%), Positives = 101/230 (43%), Gaps = 6/230 (2%)
Frame = +1
Query: 118 SSQNRQSEPTREATPRPEQA--THKVIENFMIKMTELLETSMATRRN----EQVPVTGAD 279
S+ N Q P P P T+ ++ + + ++ + +N P
Sbjct: 17 SNHNHQGNPPPPPPPPPPPPPDTNAILTQILAQQANMMTAFLHHLQNPPQLNAPPPPPQH 76
Query: 280 EALERFLKFRPLEFYGDVEQEIKAGLFLEQLNDIYDTLKYEDALRVTFAAFRLRGMAMDW 459
L FL+ RP F + A +L + DT++ D +V F A +L+G A W
Sbjct: 77 SKLAEFLRIRPPTFSSS-NNPVDALDWLHAVGKKLDTVQCSDEEKVIFTAHQLQGPASLW 135
Query: 460 WLRASEARTLKNQPWTCNDFQEEFKKEYIPRWVREQREDEFQQLRQGNLTVAQYTAKFNR 639
W +A + QP T F F++ ++P V ++ EF++L+QGN +V +Y +FN
Sbjct: 136 WDHF-QATQPEGQPITWARFTAAFRRTHVPAGVVALKKREFRELKQGNRSVMEYLHEFNN 194
Query: 640 LAKYCLRLIDTDENKTRQFVKGLRVELQRALAPLPPMGFAAAVEAATRTE 789
LA+Y + DE K +F+ G+ EL L F V+ + R E
Sbjct: 195 LARYAPEDVREDEEKQEKFLAGMDPELSVRLVSGDYPDFQRLVDKSIRLE 244
Score = 115 bits (289), Expect = 2e-22
Identities = 55/119 (46%), Positives = 78/119 (65%)
Frame = +1
Query: 4156 RGEESLSPRHIGPFGIIDRIGKVAYRLALPNERIGIHDVFHVSQLKKYHPAPDHVLNDDQ 4335
R + L+PR++GPF I+ R G+VAY+L LP +HDVFHVSQLKK P + +Q
Sbjct: 1343 RTKGKLAPRYVGPFRIVARRGEVAYQLELPASLGNVHDVFHVSQLKKCLRVPSEQADSEQ 1402
Query: 4336 LKLQVDLSYEERPTEIIERSVKELRGRQIPMCKVIWKHHGIEEATWETEEYLKKKYPEL 4512
++++ DL+Y ERP +I++ + R R I CKV W +H EEATWE E+ LK +P+L
Sbjct: 1403 IEVREDLTYVERPVKILDTMERRTRNRVIRFCKVQWSNHAEEEATWEREDELKAAHPDL 1461
>emb|CAH68025.1| OSIGBa0136O08-OSIGBa0153H12.3 [Oryza sativa Indica Group]
Length = 1826
Score = 780 bits (2014), Expect(3) = 0.0
Identities = 392/682 (57%), Positives = 491/682 (71%), Gaps = 29/682 (4%)
Frame = +3
Query: 2229 VFNLYLDKFVVIFIDDILVYSPNPEVHEQHLRKVLQTLREHKLYAKFSKCEFWMSQVTFL 2408
VF YLDKFVV+FIDDIL+YS + E H+ HLR VL LREH+LYAK SKCEFW+S+V FL
Sbjct: 1029 VFMEYLDKFVVVFIDDILIYSQSEEDHQHHLRLVLGKLREHQLYAKLSKCEFWLSEVKFL 1088
Query: 2409 GHVITQEGISVDPAKVEAVTYWTQPKTPTEVRSFLGMAGYYRRFIKDFSRIAGPLTQLTR 2588
GHVI+ +G++VDP V AVT W QPKT T+VRSFLG+AGYYRRFI++FS+IA P+TQL +
Sbjct: 1089 GHVISAKGVAVDPETVTAVTDWKQPKTVTQVRSFLGLAGYYRRFIENFSKIARPMTQLLK 1148
Query: 2589 KATKFEWTEKCERSFQELKNRLTSAPVLTLLDPNKEFSLYTDASGEGLGAVLMQDRKVVA 2768
K KF W+ +CE++FQ LK +L S+PVL L D K+F +Y DAS +GLG VLMQD VVA
Sbjct: 1149 KEEKFVWSPQCEKAFQTLKEKLVSSPVLILPDTRKDFMVYCDASRQGLGCVLMQDGHVVA 1208
Query: 2769 YISRKLKDHERNYPTHDLELAAIVFALKKWRHYLYRAKYEIFTDHKSLKYLFSQKDLNMR 2948
Y SR+L+ HE NYPTHDLELAA+V ALK WRHYL + EI+TDHKSLKY+F+Q DLN+R
Sbjct: 1209 YASRQLRPHEGNYPTHDLELAAVVHALKIWRHYLIGNRCEIYTDHKSLKYIFTQSDLNLR 1268
Query: 2949 QRRWMELLEEYRCPINYHPGKANVVADALSRKAKISSLSLTS------------------ 3074
QRRW+EL+++Y I+YHPGKANVVADALSRK+ ++L++
Sbjct: 1269 QRRWLELIKDYDVGIHYHPGKANVVADALSRKSHCNTLNVRGIPPELSQQMEALNLSIVS 1328
Query: 3075 -----------TLQEDIRSAQKSNKEFQEFKNRVKAKGLEDFRTLEADGSLYFRNRLCVP 3221
TL + IR AQK++ + +K F T + G+L+ R+CVP
Sbjct: 1329 RGFLAALEAKPTLLDQIREAQKNDPDMHGLLKNMKQGKAAGF-TEDEHGTLWNGKRVCVP 1387
Query: 3222 NDTELKRKILEEAHRSKYSMHPGENKMYKDLKQKFWWNGMKREIAEYVAACLTCQRVKAE 3401
+ ELK+ IL+EAH S YS+HPG KMY DLK+K+WW MKREIAE+VA C CQRVKAE
Sbjct: 1388 GNRELKQLILQEAHESPYSIHPGSTKMYLDLKEKYWWVSMKREIAEFVALCDVCQRVKAE 1447
Query: 3402 HQKSAGLLQPLPFPEWKWDHVTMDFVTGLPRTKGYKDAIWVIVDRLTKVAHFIAINISYP 3581
HQ+ AGLLQPL PEWKWD + MDF+TGLP+T+G D+IWV+VDRLTKVA FI + +Y
Sbjct: 1448 HQRPAGLLQPLQVPEWKWDEIGMDFITGLPKTQGGYDSIWVVVDRLTKVARFIPVKTTYG 1507
Query: 3582 LDKLTQIYVDEIVRLHGVPVDIVSDRDPRFASMFWPKFQAAMGTNLSYSTTAHPQTDGQS 3761
+KL ++Y IV LHGVP IVSDR +F S FW K Q +GT L++ST HPQTDGQ+
Sbjct: 1508 GNKLAELYFARIVSLHGVPKKIVSDRGSQFTSHFWKKLQEELGTRLNFSTAYHPQTDGQT 1567
Query: 3762 ERTIQTLEDMLRACALDFGNKWVDNLAFAEFAYNNSYHSSIGMAPFEALYGRRCRTPLYW 3941
ER Q LEDMLRAC LDFG W +L +AEF+YNNSY +SI MAP+EALYGR+CRTPL W
Sbjct: 1568 ERLNQILEDMLRACVLDFGKTWDKSLPYAEFSYNNSYQASIQMAPYEALYGRKCRTPLLW 1627
Query: 3942 DEVGVRSHWRQRNLMPELEEMQKQVKIIQDRLQTAKSRQKSYADNRRRDLEFNVRDRVFL 4121
D+VG + L E + +V+II++ L+ A+SRQKSYADNRRRDLEF V D V+L
Sbjct: 1628 DQVGESQVFG----TDILREAEAKVRIIRENLKVAQSRQKSYADNRRRDLEFAVDDFVYL 1683
Query: 4122 KLTPHRGKLRYPRRGKFKSPTY 4187
++TP RG R+ +GK +P Y
Sbjct: 1684 RVTPLRGVHRFQTKGKL-APRY 1704
Score = 301 bits (772), Expect(3) = 0.0
Identities = 171/409 (41%), Positives = 229/409 (55%), Gaps = 3/409 (0%)
Frame = +2
Query: 1016 RLCFKCGKPGHTKDQCPEMQQVTPEMSRKAGRPPIMRGTTEGRNNKPQIKAKVYALDGLP 1195
RLCF C +PGH D+CP+ + R+ G+ P K I+ +V +
Sbjct: 661 RLCFNCFEPGHFADKCPKPR-------RQQGQAP----PRSNNGGKDVIRGRVNHVTAED 709
Query: 1196 VDTEVEVVEGMIKIFSQLARVLIDPGATHSFVSLHFIKHTPIPPVNMHYQLIVSTPMGVN 1375
V T +V+ G + S A +L D GA+HSF+S+ F+ + + L+++TP GV
Sbjct: 710 VLTTPDVIVGTFLVHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGV- 768
Query: 1376 KITEVKY--PDCDICVENVVLSGDLIALPLEGYDVILGMDWLSKHYAQLDCRRKLVKFSR 1549
KY P I ++ + DLI L + DVILGM+WL++ +DC R+ V R
Sbjct: 769 --MTAKYYSPAVPIEIQGIPFPSDLILLDTKNLDVILGMNWLAQFQGVVDCARRTVTLYR 826
Query: 1550 -PSMPILVFQGKRTKRENPFLSAMKARKLLWKGCQGYLVYLLNKPKEEVKLDIVPVVREL 1726
P P++ F + R + ++ L +P+VRE
Sbjct: 827 GPEQPVVFFAPPTSVRSSEL--------------------------HQIGLSEIPIVREF 860
Query: 1727 RDVFPEELTTLPLDREVEFGIELVPDAKPISRTPYRMAXXXXXXXXXXXXXXXXXGYIRP 1906
DVFPEEL +P RE+EF I+L P P+ + PYRMA GYIRP
Sbjct: 861 GDVFPEELPGMPPKREIEFRIDLAPGTTPLHKRPYRMAANELAEVKKQLEELKEKGYIRP 920
Query: 1907 STSPWGAPVLFVKKKDGTLRMCIDYRGLNNVTVKNKYLLPLIDELFDQLRGAGYFSKLDL 2086
STSPWGAPV+FV+KKD T RMC+DYR LN VT+KNKY LP ID+LFDQL+GA FSK+DL
Sbjct: 921 STSPWGAPVIFVEKKDKTKRMCVDYRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDL 980
Query: 2087 R*GYYQVRIREKDIPMTAFNTRYGHYEFVVMPFELTNAPATFMDLIHSL 2233
R GY+Q+RIRE+DIP TAF TRYG YEF VM F LTNAPA FM+L++ +
Sbjct: 981 RSGYHQLRIREEDIPKTAFTTRYGLYEFTVMSFGLTNAPAFFMNLMNKV 1029
Score = 111 bits (278), Expect(3) = 0.0
Identities = 54/114 (47%), Positives = 74/114 (64%)
Frame = +1
Query: 4171 LSPRHIGPFGIIDRIGKVAYRLALPNERIGIHDVFHVSQLKKYHPAPDHVLNDDQLKLQV 4350
L+PR++GPF II R G+VAY+L LP +HDVFHVSQLKK P + Q++++
Sbjct: 1700 LAPRYVGPFRIIARRGEVAYQLELPASLGNVHDVFHVSQLKKCLRVPSEQADSKQIEVRE 1759
Query: 4351 DLSYEERPTEIIERSVKELRGRQIPMCKVIWKHHGIEEATWETEEYLKKKYPEL 4512
DL+Y E+P +I++ + R R I CKV W +H EEATWE E+ LK +P L
Sbjct: 1760 DLTYVEKPVKILDTMERRTRNRVIRFCKVQWSNHAEEEATWEREDELKAAHPGL 1813
Score = 84.3 bits (207), Expect = 5e-13
Identities = 69/250 (27%), Positives = 109/250 (43%), Gaps = 7/250 (2%)
Frame = +1
Query: 61 FRRMSGSRTLNHVDVAVSE-SSQNRQSEPTREATPRPEQA--THKVIENFMIK----MTE 219
F+ ++ R N D E S+ N Q P P P T+ ++ + + MT
Sbjct: 319 FQMVTTRRNANTSDGNQPEGSNHNHQGNPPPPPPPPPPPPPDTNAILTQILAQQANMMTA 378
Query: 220 LLETSMATRRNEQVPVTGADEALERFLKFRPLEFYGDVEQEIKAGLFLEQLNDIYDTLKY 399
L + P L FL+ RP F + A +L + DT++
Sbjct: 379 FLHHLQNPPQQNAPPPPPQHSKLAEFLRIRPPTFSSS-NNPVDALDWLHAVGKKLDTVQC 437
Query: 400 EDALRVTFAAFRLRGMAMDWWLRASEARTLKNQPWTCNDFQEEFKKEYIPRWVREQREDE 579
D +V FAA +L+G A WW +A + QP T F F++ ++P V ++ E
Sbjct: 438 SDEEKVVFAAHQLQGPASLWWDHF-QATQPEGQPITWARFTAAFRRTHVPAGVVALKKRE 496
Query: 580 FQQLRQGNLTVAQYTAKFNRLAKYCLRLIDTDENKTRQFVKGLRVELQRALAPLPPMGFA 759
F++L+QGN +V +Y +FN LA+Y + DE K +F+ G+ EL L F
Sbjct: 497 FRELKQGNRSVMEYLHEFNNLARYAPEDVREDEEKQEKFLAGMDPELSIRLVSGDYPDFQ 556
Query: 760 AAVEAATRTE 789
V+ + R E
Sbjct: 557 RLVDKSIRLE 566
>gb|AAV32172.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1820
Score = 779 bits (2011), Expect(3) = 0.0
Identities = 392/682 (57%), Positives = 490/682 (71%), Gaps = 29/682 (4%)
Frame = +3
Query: 2229 VFNLYLDKFVVIFIDDILVYSPNPEVHEQHLRKVLQTLREHKLYAKFSKCEFWMSQVTFL 2408
VF YLDKFVV+FIDDIL+YS + E H+ HLR VL LRE +LYAK SKCEFW+S+V FL
Sbjct: 1023 VFMEYLDKFVVVFIDDILIYSQSEEDHQHHLRLVLGKLRERRLYAKLSKCEFWLSEVKFL 1082
Query: 2409 GHVITQEGISVDPAKVEAVTYWTQPKTPTEVRSFLGMAGYYRRFIKDFSRIAGPLTQLTR 2588
GHVI+ +G++VDP V AVT W QPKT T+VRSFLG+AGYYRRFI++FS+IA P+TQL +
Sbjct: 1083 GHVISAKGVAVDPETVTAVTDWKQPKTVTQVRSFLGLAGYYRRFIENFSKIARPMTQLLK 1142
Query: 2589 KATKFEWTEKCERSFQELKNRLTSAPVLTLLDPNKEFSLYTDASGEGLGAVLMQDRKVVA 2768
K KF W+ +CE++FQ LK +L S+PVL L D K+F +Y DAS +GLG VLMQD VVA
Sbjct: 1143 KEEKFVWSPQCEKAFQTLKEKLVSSPVLILPDTRKDFMVYCDASRQGLGCVLMQDGHVVA 1202
Query: 2769 YISRKLKDHERNYPTHDLELAAIVFALKKWRHYLYRAKYEIFTDHKSLKYLFSQKDLNMR 2948
Y SR+L+ HE NYPTHDLELAA+V ALK WRHYL + EI+TDHKSLKY+F+Q DLN+R
Sbjct: 1203 YASRQLRPHEGNYPTHDLELAAVVHALKIWRHYLIGNRCEIYTDHKSLKYIFTQSDLNLR 1262
Query: 2949 QRRWMELLEEYRCPINYHPGKANVVADALSRKAKISSLSLTS------------------ 3074
QRRW+EL+++Y I+YHPGKANVVADALSRK ++L++
Sbjct: 1263 QRRWLELIKDYDVGIHYHPGKANVVADALSRKGHCNTLNVRGIPPELNQQMEALNLSIVS 1322
Query: 3075 -----------TLQEDIRSAQKSNKEFQEFKNRVKAKGLEDFRTLEADGSLYFRNRLCVP 3221
TL + IR AQK++ + +K F T + G+L+ R+CVP
Sbjct: 1323 RGFLAALEAKPTLLDQIREAQKNDPDMHGLLKNMKQGKAAGF-TEDEHGTLWNGKRVCVP 1381
Query: 3222 NDTELKRKILEEAHRSKYSMHPGENKMYKDLKQKFWWNGMKREIAEYVAACLTCQRVKAE 3401
++ ELK+ IL+EAH S YS+HPG KMY DLK+K+WW MKREIAE+VA C CQRVKAE
Sbjct: 1382 HNRELKQLILQEAHESPYSIHPGSTKMYLDLKEKYWWVSMKREIAEFVALCDVCQRVKAE 1441
Query: 3402 HQKSAGLLQPLPFPEWKWDHVTMDFVTGLPRTKGYKDAIWVIVDRLTKVAHFIAINISYP 3581
HQ+ AGLLQPL PEWKWD + MDF+TGLP+T+G D+IWV+VDRLTKVA FI + +Y
Sbjct: 1442 HQRPAGLLQPLQVPEWKWDEIGMDFITGLPKTQGGYDSIWVVVDRLTKVARFIPVKTTYG 1501
Query: 3582 LDKLTQIYVDEIVRLHGVPVDIVSDRDPRFASMFWPKFQAAMGTNLSYSTTAHPQTDGQS 3761
+KL ++Y IV LHGVP IVSDR +F S FW K Q +GT L++ST HPQTDGQ+
Sbjct: 1502 GNKLAELYFARIVSLHGVPKKIVSDRGSQFTSHFWKKLQEELGTRLNFSTAYHPQTDGQT 1561
Query: 3762 ERTIQTLEDMLRACALDFGNKWVDNLAFAEFAYNNSYHSSIGMAPFEALYGRRCRTPLYW 3941
ER Q LEDMLRAC LDFG W +L +AEF+YNNSY +SI MAP+EALYGR+CRTPL W
Sbjct: 1562 ERLNQILEDMLRACVLDFGKTWDKSLPYAEFSYNNSYQASIQMAPYEALYGRKCRTPLLW 1621
Query: 3942 DEVGVRSHWRQRNLMPELEEMQKQVKIIQDRLQTAKSRQKSYADNRRRDLEFNVRDRVFL 4121
D+VG + L E + +V+II+D L+ A+SRQKSYADNRRRDLEF V D V+L
Sbjct: 1622 DQVGESQVFG----TDILREAEAKVRIIRDNLKVAQSRQKSYADNRRRDLEFAVGDFVYL 1677
Query: 4122 KLTPHRGKLRYPRRGKFKSPTY 4187
++TP RG R+ +GK +P Y
Sbjct: 1678 RVTPLRGVHRFQTKGKL-APRY 1698
Score = 293 bits (750), Expect(3) = 0.0
Identities = 168/409 (41%), Positives = 227/409 (55%), Gaps = 3/409 (0%)
Frame = +2
Query: 1016 RLCFKCGKPGHTKDQCPEMQQVTPEMSRKAGRPPIMRGTTEGRNNKPQIKAKVYALDGLP 1195
RLCF C +PGH D+CP+ + R+ G+ P K I+ +V +
Sbjct: 655 RLCFNCFEPGHFADKCPKPR-------RQQGQAP----PRSNNGGKDVIRGRVNHVTAED 703
Query: 1196 VDTEVEVVEGMIKIFSQLARVLIDPGATHSFVSLHFIKHTPIPPVNMHYQLIVSTPMGVN 1375
V T +V+ G + S A +L D GA+HSF+S+ F+ + + L+++TP GV
Sbjct: 704 VLTTPDVIVGTFLVHSIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGV- 762
Query: 1376 KITEVKY--PDCDICVENVVLSGDLIALPLEGYDVILGMDWLSKHYAQLDCRRKLVKFSR 1549
KY P I ++ + L DLI L + DVILGM+WL++ +DC R+ V R
Sbjct: 763 --MTAKYYSPAVPIDIQGIPLPSDLILLDTKNLDVILGMNWLAQFQGVVDCARRTVTLYR 820
Query: 1550 -PSMPILVFQGKRTKRENPFLSAMKARKLLWKGCQGYLVYLLNKPKEEVKLDIVPVVREL 1726
P P++ F + + ++ L +P+VRE
Sbjct: 821 GPEQPVVFFAPPTSVSSSEL--------------------------HQIGLSEIPIVREF 854
Query: 1727 RDVFPEELTTLPLDREVEFGIELVPDAKPISRTPYRMAXXXXXXXXXXXXXXXXXGYIRP 1906
DVFPEEL +P RE+EF I+L P P+ + PYRMA GYIRP
Sbjct: 855 GDVFPEELPGMPPKREIEFRIDLAPGTTPLHKRPYRMAANELAEVKKQLEELKEKGYIRP 914
Query: 1907 STSPWGAPVLFVKKKDGTLRMCIDYRGLNNVTVKNKYLLPLIDELFDQLRGAGYFSKLDL 2086
STS WGAPV+FV+KKD T RMC+DYR LN VT+KNKY LP ID+LFDQL+GA FSK+DL
Sbjct: 915 STSAWGAPVIFVEKKDKTKRMCVDYRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKIDL 974
Query: 2087 R*GYYQVRIREKDIPMTAFNTRYGHYEFVVMPFELTNAPATFMDLIHSL 2233
R GY+Q+RIRE+DI TAF TRYG Y+F VM F LTNAPA FM+L++ +
Sbjct: 975 RSGYHQLRIREEDIRKTAFTTRYGLYKFTVMSFGLTNAPAFFMNLMNKV 1023
Score = 115 bits (288), Expect(3) = 0.0
Identities = 55/114 (48%), Positives = 76/114 (66%)
Frame = +1
Query: 4171 LSPRHIGPFGIIDRIGKVAYRLALPNERIGIHDVFHVSQLKKYHPAPDHVLNDDQLKLQV 4350
L+PR++GPF II R G+VAY+L LP +HDVFHVSQLKK P + +Q++++
Sbjct: 1694 LAPRYVGPFHIIARRGEVAYQLELPASLGNVHDVFHVSQLKKCLRVPSEQADSEQIEVRE 1753
Query: 4351 DLSYEERPTEIIERSVKELRGRQIPMCKVIWKHHGIEEATWETEEYLKKKYPEL 4512
DL+Y ERP +I++ + R R I CKV W +H EEATWE E+ LK +P+L
Sbjct: 1754 DLTYVERPVKILDTMERRTRNRVIRFCKVQWSNHAEEEATWEREDELKAAHPDL 1807
Score = 83.2 bits (204), Expect = 1e-12
Identities = 64/230 (27%), Positives = 101/230 (43%), Gaps = 6/230 (2%)
Frame = +1
Query: 118 SSQNRQSEPTREATPRPEQA--THKVIENFMIK----MTELLETSMATRRNEQVPVTGAD 279
S+ N Q P P P T+ ++ + + MT L + P
Sbjct: 335 SNHNHQGNPPPPPPPPPPPPPDTNAILTQILAQQANMMTAFLHHLQNPPQQNAPPPPPQH 394
Query: 280 EALERFLKFRPLEFYGDVEQEIKAGLFLEQLNDIYDTLKYEDALRVTFAAFRLRGMAMDW 459
L FL+ RP F + A +L + DT++ D +V FAA +L+G A W
Sbjct: 395 SKLAEFLRIRPPTFSSS-NNPVDALDWLHAVGKKLDTVQCSDEEKVIFAAHQLQGPASLW 453
Query: 460 WLRASEARTLKNQPWTCNDFQEEFKKEYIPRWVREQREDEFQQLRQGNLTVAQYTAKFNR 639
W +A + QP T F F++ ++P V ++ EF++L+QGN +V +Y +FN
Sbjct: 454 WDHF-QATQPEGQPITWARFTAAFRRTHVPAGVVALKKREFRELKQGNRSVMEYLHEFNN 512
Query: 640 LAKYCLRLIDTDENKTRQFVKGLRVELQRALAPLPPMGFAAAVEAATRTE 789
LA+Y + DE K +F+ G+ EL L F V+ + R E
Sbjct: 513 LARYAPEDVREDEEKQEKFLAGMDPELSVRLVSGDYPDFQRLVDKSIRLE 562