BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Catharanthus22_contig00016398
         (201 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004972810.1| PREDICTED: DNA-directed RNA polymerase II su...   109   3e-22
gb|ACD63086.1| RNA polymerase II largest subunit [Liriodendron t...   108   6e-22
ref|XP_006828844.1| hypothetical protein AMTR_s00001p00152770 [A...   108   7e-22
ref|XP_004972809.1| PREDICTED: DNA-directed RNA polymerase II su...   108   7e-22
gb|ACD63088.1| RNA polymerase II largest subunit [Papaver orient...   108   7e-22
gb|ACD63085.1| RNA polymerase II largest subunit [Illicium parvi...   108   7e-22
gb|ACD63083.1| RNA polymerase II largest subunit [Ceratophyllum ...   108   7e-22
gb|ACD63082.1| RNA polymerase II largest subunit [Beta vulgaris]      108   7e-22
gb|AAR05864.1| RNA polymerase II largest subunit [Magnolia x sou...   108   7e-22
gb|AAQ08516.1| RNA polymerase II largest subunit [Magnolia x sou...   108   7e-22
gb|AAQ08518.1| RNA polymerase II largest subunit [Amborella tric...   108   7e-22
gb|AAS79684.1| RNA polymerase II large subunit [Thuja occidentalis]   108   1e-21
emb|CBI18915.3| unnamed protein product [Vitis vinifera]              108   1e-21
ref|XP_002285900.1| PREDICTED: DNA-directed RNA polymerase II su...   108   1e-21
gb|ACD63091.1| RNA polymerase II largest subunit [Saruma henryi]      108   1e-21
gb|AAS79687.1| RNA polymerase II large subunit [Ginkgo biloba]        107   1e-21
gb|AAR05865.1| RNA polymerase II largest subunit [Ginkgo biloba]      107   1e-21
ref|XP_006383037.1| DNA-directed RNA polymerase II largest subun...   107   2e-21
gb|AFW57310.1| RNA polymerase II large subunit family protein [Z...   107   2e-21
gb|AAR05868.1| RNA polymerase II largest subunit [Nymphaea odorata]   107   2e-21

>ref|XP_004972810.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like isoform
           X2 [Setaria italica]
          Length = 1852

 Score =  109 bits (273), Expect = 3e-22
 Identities = 57/66 (86%), Positives = 59/66 (89%)
 Frame = -3

Query: 199 TMETINDTISKAKNEVKELIEMYKNNKLEAEPGRTMTESFENRVNQVLNKARDDAGSSAQ 20
           TME IN+TISKAKNEVKELI+    N LEAEPGRTM ESFENRVNQVLNKARDDAGSSAQ
Sbjct: 693 TMEKINETISKAKNEVKELIKQAHENHLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQ 752

Query: 19  KSLSES 2
           KSLSES
Sbjct: 753 KSLSES 758


>gb|ACD63086.1| RNA polymerase II largest subunit [Liriodendron tulipifera]
          Length = 1010

 Score =  108 bits (271), Expect = 6e-22
 Identities = 56/66 (84%), Positives = 61/66 (92%)
 Frame = -3

Query: 199 TMETINDTISKAKNEVKELIEMYKNNKLEAEPGRTMTESFENRVNQVLNKARDDAGSSAQ 20
           TME IN+TISKAKNEVKELI+  ++ +LEAEPGRTM ESFENRVNQVLNKARDDAGSSAQ
Sbjct: 612 TMEKINETISKAKNEVKELIKAAQDKQLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQ 671

Query: 19  KSLSES 2
           KSLSES
Sbjct: 672 KSLSES 677


>ref|XP_006828844.1| hypothetical protein AMTR_s00001p00152770 [Amborella trichopoda]
           gi|548833823|gb|ERM96260.1| hypothetical protein
           AMTR_s00001p00152770 [Amborella trichopoda]
          Length = 1844

 Score =  108 bits (270), Expect = 7e-22
 Identities = 56/66 (84%), Positives = 60/66 (90%)
 Frame = -3

Query: 199 TMETINDTISKAKNEVKELIEMYKNNKLEAEPGRTMTESFENRVNQVLNKARDDAGSSAQ 20
           TME IN+TISKAKNEVKELI+  +  +LEAEPGRTM ESFENRVNQVLNKARDDAGSSAQ
Sbjct: 696 TMEKINETISKAKNEVKELIKAAQEKQLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQ 755

Query: 19  KSLSES 2
           KSLSES
Sbjct: 756 KSLSES 761


>ref|XP_004972809.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like isoform
           X1 [Setaria italica]
          Length = 1852

 Score =  108 bits (270), Expect = 7e-22
 Identities = 56/66 (84%), Positives = 60/66 (90%)
 Frame = -3

Query: 199 TMETINDTISKAKNEVKELIEMYKNNKLEAEPGRTMTESFENRVNQVLNKARDDAGSSAQ 20
           TME IN+TISKAKNEVKELI+  ++  LEAEPGRTM ESFENRVNQVLNKARDDAGSSAQ
Sbjct: 693 TMEKINETISKAKNEVKELIKQAQDKHLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQ 752

Query: 19  KSLSES 2
           KSLSES
Sbjct: 753 KSLSES 758


>gb|ACD63088.1| RNA polymerase II largest subunit [Papaver orientale]
          Length = 1010

 Score =  108 bits (270), Expect = 7e-22
 Identities = 56/66 (84%), Positives = 58/66 (87%)
 Frame = -3

Query: 199 TMETINDTISKAKNEVKELIEMYKNNKLEAEPGRTMTESFENRVNQVLNKARDDAGSSAQ 20
           TME INDTISKAKNEVK+LI M +   LE EPGRTM ESFENRVNQVLNKARDDAGSSAQ
Sbjct: 612 TMEKINDTISKAKNEVKDLIRMAQEKSLEPEPGRTMMESFENRVNQVLNKARDDAGSSAQ 671

Query: 19  KSLSES 2
           KSLSES
Sbjct: 672 KSLSES 677


>gb|ACD63085.1| RNA polymerase II largest subunit [Illicium parviflorum]
          Length = 1013

 Score =  108 bits (270), Expect = 7e-22
 Identities = 56/66 (84%), Positives = 60/66 (90%)
 Frame = -3

Query: 199 TMETINDTISKAKNEVKELIEMYKNNKLEAEPGRTMTESFENRVNQVLNKARDDAGSSAQ 20
           TME IN+TISKAKNEVKELI+  +  +LEAEPGRTM ESFENRVNQVLNKARDDAGSSAQ
Sbjct: 615 TMEKINETISKAKNEVKELIKAAQEKQLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQ 674

Query: 19  KSLSES 2
           KSLSES
Sbjct: 675 KSLSES 680


>gb|ACD63083.1| RNA polymerase II largest subunit [Ceratophyllum demersum]
          Length = 1010

 Score =  108 bits (270), Expect = 7e-22
 Identities = 56/66 (84%), Positives = 60/66 (90%)
 Frame = -3

Query: 199 TMETINDTISKAKNEVKELIEMYKNNKLEAEPGRTMTESFENRVNQVLNKARDDAGSSAQ 20
           TME IN+TISKAKNEVKELI+  +  +LEAEPGRTM ESFENRVNQVLNKARDDAGSSAQ
Sbjct: 612 TMEKINETISKAKNEVKELIKAAQEKQLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQ 671

Query: 19  KSLSES 2
           KSLSES
Sbjct: 672 KSLSES 677


>gb|ACD63082.1| RNA polymerase II largest subunit [Beta vulgaris]
          Length = 1012

 Score =  108 bits (270), Expect = 7e-22
 Identities = 56/66 (84%), Positives = 60/66 (90%)
 Frame = -3

Query: 199 TMETINDTISKAKNEVKELIEMYKNNKLEAEPGRTMTESFENRVNQVLNKARDDAGSSAQ 20
           TME IN+TISKAKNEVKELI+  +  +LEAEPGRTM ESFENRVNQVLNKARDDAGSSAQ
Sbjct: 614 TMEKINETISKAKNEVKELIKAAQEKQLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQ 673

Query: 19  KSLSES 2
           KSLSES
Sbjct: 674 KSLSES 679


>gb|AAR05864.1| RNA polymerase II largest subunit [Magnolia x soulangeana]
          Length = 280

 Score =  108 bits (270), Expect = 7e-22
 Identities = 56/66 (84%), Positives = 60/66 (90%)
 Frame = -3

Query: 199 TMETINDTISKAKNEVKELIEMYKNNKLEAEPGRTMTESFENRVNQVLNKARDDAGSSAQ 20
           TME IN+TISKAKNEVKELI+  +  +LEAEPGRTM ESFENRVNQVLNKARDDAGSSAQ
Sbjct: 193 TMEKINETISKAKNEVKELIKAAQEKQLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQ 252

Query: 19  KSLSES 2
           KSLSES
Sbjct: 253 KSLSES 258


>gb|AAQ08516.1| RNA polymerase II largest subunit [Magnolia x soulangeana]
          Length = 1010

 Score =  108 bits (270), Expect = 7e-22
 Identities = 56/66 (84%), Positives = 60/66 (90%)
 Frame = -3

Query: 199 TMETINDTISKAKNEVKELIEMYKNNKLEAEPGRTMTESFENRVNQVLNKARDDAGSSAQ 20
           TME IN+TISKAKNEVKELI+  +  +LEAEPGRTM ESFENRVNQVLNKARDDAGSSAQ
Sbjct: 612 TMEKINETISKAKNEVKELIKAAQEKQLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQ 671

Query: 19  KSLSES 2
           KSLSES
Sbjct: 672 KSLSES 677


>gb|AAQ08518.1| RNA polymerase II largest subunit [Amborella trichopoda]
          Length = 1013

 Score =  108 bits (270), Expect = 7e-22
 Identities = 56/66 (84%), Positives = 60/66 (90%)
 Frame = -3

Query: 199 TMETINDTISKAKNEVKELIEMYKNNKLEAEPGRTMTESFENRVNQVLNKARDDAGSSAQ 20
           TME IN+TISKAKNEVKELI+  +  +LEAEPGRTM ESFENRVNQVLNKARDDAGSSAQ
Sbjct: 615 TMEKINETISKAKNEVKELIKAAQEKQLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQ 674

Query: 19  KSLSES 2
           KSLSES
Sbjct: 675 KSLSES 680


>gb|AAS79684.1| RNA polymerase II large subunit [Thuja occidentalis]
          Length = 1013

 Score =  108 bits (269), Expect = 1e-21
 Identities = 55/66 (83%), Positives = 61/66 (92%)
 Frame = -3

Query: 199 TMETINDTISKAKNEVKELIEMYKNNKLEAEPGRTMTESFENRVNQVLNKARDDAGSSAQ 20
           TME IN+TISKAKNEVK+LI+  ++ +LEAEPGRTM ESFENRVNQVLNKARDDAGSSAQ
Sbjct: 615 TMEVINETISKAKNEVKQLIKAAQDKQLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQ 674

Query: 19  KSLSES 2
           KSLSES
Sbjct: 675 KSLSES 680


>emb|CBI18915.3| unnamed protein product [Vitis vinifera]
          Length = 1565

 Score =  108 bits (269), Expect = 1e-21
 Identities = 56/66 (84%), Positives = 59/66 (89%)
 Frame = -3

Query: 199 TMETINDTISKAKNEVKELIEMYKNNKLEAEPGRTMTESFENRVNQVLNKARDDAGSSAQ 20
           TME IN+TISKAKNEVKELI   +  +LEAEPGRTM ESFENRVNQVLNKARDDAGSSAQ
Sbjct: 741 TMEKINETISKAKNEVKELIRAAQERQLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQ 800

Query: 19  KSLSES 2
           KSLSES
Sbjct: 801 KSLSES 806


>ref|XP_002285900.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Vitis
           vinifera]
          Length = 1848

 Score =  108 bits (269), Expect = 1e-21
 Identities = 56/66 (84%), Positives = 59/66 (89%)
 Frame = -3

Query: 199 TMETINDTISKAKNEVKELIEMYKNNKLEAEPGRTMTESFENRVNQVLNKARDDAGSSAQ 20
           TME IN+TISKAKNEVKELI   +  +LEAEPGRTM ESFENRVNQVLNKARDDAGSSAQ
Sbjct: 693 TMEKINETISKAKNEVKELIRAAQERQLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQ 752

Query: 19  KSLSES 2
           KSLSES
Sbjct: 753 KSLSES 758


>gb|ACD63091.1| RNA polymerase II largest subunit [Saruma henryi]
          Length = 1009

 Score =  108 bits (269), Expect = 1e-21
 Identities = 56/66 (84%), Positives = 59/66 (89%)
 Frame = -3

Query: 199 TMETINDTISKAKNEVKELIEMYKNNKLEAEPGRTMTESFENRVNQVLNKARDDAGSSAQ 20
           TME INDTI+KAKNEVKELI+     +LEAEPGRTM ESFENRVNQVLNKARDDAGSSAQ
Sbjct: 611 TMEKINDTITKAKNEVKELIKAAHEKQLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQ 670

Query: 19  KSLSES 2
           KSLSES
Sbjct: 671 KSLSES 676


>gb|AAS79687.1| RNA polymerase II large subunit [Ginkgo biloba]
          Length = 1013

 Score =  107 bits (268), Expect = 1e-21
 Identities = 55/66 (83%), Positives = 60/66 (90%)
 Frame = -3

Query: 199 TMETINDTISKAKNEVKELIEMYKNNKLEAEPGRTMTESFENRVNQVLNKARDDAGSSAQ 20
           TMETIN+TISKAKNEVK+LI+  +   LEAEPGRTM ESFENRVNQVLNKARDDAGSSAQ
Sbjct: 615 TMETINETISKAKNEVKQLIKAAQEKALEAEPGRTMMESFENRVNQVLNKARDDAGSSAQ 674

Query: 19  KSLSES 2
           +SLSES
Sbjct: 675 RSLSES 680


>gb|AAR05865.1| RNA polymerase II largest subunit [Ginkgo biloba]
          Length = 280

 Score =  107 bits (268), Expect = 1e-21
 Identities = 55/66 (83%), Positives = 60/66 (90%)
 Frame = -3

Query: 199 TMETINDTISKAKNEVKELIEMYKNNKLEAEPGRTMTESFENRVNQVLNKARDDAGSSAQ 20
           TMETIN+TISKAKNEVK+LI+  +   LEAEPGRTM ESFENRVNQVLNKARDDAGSSAQ
Sbjct: 193 TMETINETISKAKNEVKQLIKAAQEKALEAEPGRTMMESFENRVNQVLNKARDDAGSSAQ 252

Query: 19  KSLSES 2
           +SLSES
Sbjct: 253 RSLSES 258


>ref|XP_006383037.1| DNA-directed RNA polymerase II largest subunit family protein
           [Populus trichocarpa] gi|550338614|gb|ERP60834.1|
           DNA-directed RNA polymerase II largest subunit family
           protein [Populus trichocarpa]
          Length = 1837

 Score =  107 bits (267), Expect = 2e-21
 Identities = 55/66 (83%), Positives = 59/66 (89%)
 Frame = -3

Query: 199 TMETINDTISKAKNEVKELIEMYKNNKLEAEPGRTMTESFENRVNQVLNKARDDAGSSAQ 20
           TME IN+TIS AKNEVK+LI   +N +LEAEPGRTM ESFENRVNQVLNKARDDAGSSAQ
Sbjct: 693 TMEKINETISNAKNEVKDLIRKAQNKELEAEPGRTMMESFENRVNQVLNKARDDAGSSAQ 752

Query: 19  KSLSES 2
           KSLSES
Sbjct: 753 KSLSES 758


>gb|AFW57310.1| RNA polymerase II large subunit family protein [Zea mays]
          Length = 1850

 Score =  107 bits (267), Expect = 2e-21
 Identities = 56/66 (84%), Positives = 58/66 (87%)
 Frame = -3

Query: 199 TMETINDTISKAKNEVKELIEMYKNNKLEAEPGRTMTESFENRVNQVLNKARDDAGSSAQ 20
           TMETINDTISKAKN VKELI+     +LEAEPGRTM ESFENRVNQVLNKARDDAGSSAQ
Sbjct: 692 TMETINDTISKAKNAVKELIKKAHEKQLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQ 751

Query: 19  KSLSES 2
            SLSES
Sbjct: 752 NSLSES 757


>gb|AAR05868.1| RNA polymerase II largest subunit [Nymphaea odorata]
          Length = 280

 Score =  107 bits (267), Expect = 2e-21
 Identities = 55/66 (83%), Positives = 60/66 (90%)
 Frame = -3

Query: 199 TMETINDTISKAKNEVKELIEMYKNNKLEAEPGRTMTESFENRVNQVLNKARDDAGSSAQ 20
           TME IN+TISKAKNEVKELI+  +  +LEAEPGRTM ESFENRVNQVLNKARDDAGSSAQ
Sbjct: 193 TMEKINETISKAKNEVKELIKAAQEKQLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQ 252

Query: 19  KSLSES 2
           +SLSES
Sbjct: 253 RSLSES 258