BLASTX nr result
ID: Catharanthus22_contig00016003
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus22_contig00016003
(1093 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EMJ08431.1| hypothetical protein PRUPE_ppa026856mg [Prunus pe... 195 2e-73
gb|EMJ11389.1| hypothetical protein PRUPE_ppa017790mg [Prunus pe... 192 5e-73
gb|EMJ01397.1| hypothetical protein PRUPE_ppa016013mg, partial [... 187 9e-69
emb|CAN71532.1| hypothetical protein VITISV_018180 [Vitis vinifera] 191 3e-68
emb|CAN77045.1| hypothetical protein VITISV_035256 [Vitis vinifera] 188 2e-67
emb|CAN79389.1| hypothetical protein VITISV_004909 [Vitis vinifera] 194 7e-66
gb|EMJ13768.1| hypothetical protein PRUPE_ppa015570mg, partial [... 163 7e-65
gb|EMJ21939.1| hypothetical protein PRUPE_ppa023598mg [Prunus pe... 159 3e-62
gb|AAF79348.1|AC007887_7 F15O4.13 [Arabidopsis thaliana] 161 1e-59
gb|ADP20178.1| gag-pol polyprotein [Silene latifolia] 160 4e-59
gb|AAK51582.1|AC022352_18 Putative retroelement [Oryza sativa Ja... 157 6e-58
gb|AAW28578.1| Putative gag-pol polyprotein, identical [Solanum ... 157 3e-57
gb|AAM94350.1| gag-pol polyprotein [Zea mays] 155 3e-57
gb|EMJ21583.1| hypothetical protein PRUPE_ppa021778mg [Prunus pe... 194 3e-57
gb|AAW28577.1| Putative gag-pol polyprotein, identical [Solanum ... 157 6e-57
gb|AAQ56338.1| putative gag-pol polyprotein [Oryza sativa Japoni... 150 2e-55
gb|EMJ28035.1| hypothetical protein PRUPE_ppa017565mg, partial [... 176 6e-55
gb|ABF97027.1| retrotransposon protein, putative, Ty3-gypsy subc... 150 8e-55
gb|AAK91332.1|AC090441_14 Putative gag-pol polyprotein [Oryza sa... 151 1e-54
dbj|BAA89466.1| gag-pol polyprotein [Oryza sativa Indica Group] 149 2e-54
>gb|EMJ08431.1| hypothetical protein PRUPE_ppa026856mg [Prunus persica]
Length = 1493
Score = 195 bits (495), Expect(3) = 2e-73
Identities = 102/193 (52%), Positives = 127/193 (65%), Gaps = 4/193 (2%)
Frame = +2
Query: 488 F*RSEVRLYGLPKTIISDRNTKFLSQFWRTLWWLLGTKVQYSSAYHPQTNGHSEVVNRSL 667
F R VRL+G+P +I SDR+TKFLS FW TLW L GT + SS HPQT+G +EV NR+L
Sbjct: 1229 FFREVVRLHGVPTSITSDRDTKFLSHFWITLWRLFGTTLNRSSTAHPQTDGQTEVTNRTL 1288
Query: 668 GNLLRCLTKDHIRQWDMILPQVEFSYNGTINRFIGKSPFQVVYGRNPNQILDLMDISNQS 847
GN++R + + +QWD LPQ+EF+YN ++ GKSPF +VY PN ++DL+ +
Sbjct: 1289 GNMVRSVCGEKPKQWDYALPQMEFAYNSAVHSATGKSPFSIVYTATPNHVVDLVKLPRGQ 1348
Query: 848 NDDAIAYSKNLKE----VQDEV*TTLEHWNKHYKEVADRHRRFKEYKVGD*VMVFLCKER 1015
A KNL E V+DEV LE N YK ADRHRR K ++ GD VMVFL KER
Sbjct: 1349 QTSVAA--KNLAEEVVAVRDEVKQKLEQTNAKYKAAADRHRRVKVFQEGDSVMVFLRKER 1406
Query: 1016 FPAGTYHKLKSKK 1054
FPAGTY KLK KK
Sbjct: 1407 FPAGTYSKLKPKK 1419
Score = 103 bits (258), Expect(3) = 2e-73
Identities = 59/125 (47%), Positives = 74/125 (59%), Gaps = 5/125 (4%)
Frame = +1
Query: 130 EYFISELHGRGLGGHFDWDTEFSC*KVL-----LAFNVAGCVQAC*SLSTCQVSKGLH*N 294
E I +LHG GL GH D + + L +V V+ C TCQ SKG N
Sbjct: 1109 EKLIRDLHGGGLSGHLGRDKTIAGMEERFYWPQLKRDVGTIVRKC---YTCQTSKGQVQN 1165
Query: 295 ICLYNLLPVLTAAWVDINMDFAVGLPRTARSIDSIFIVMDRFSKMAYFLACKKTQDATHV 474
LY LPV W D+ MDF +G PRT R +DS+F+V DRFSKMA+F+ACKKT DA+++
Sbjct: 1166 TGLYMPLPVPNDIWQDLAMDFVLGFPRTQRRVDSVFVVADRFSKMAHFIACKKTADASNI 1225
Query: 475 ASLFF 489
A LFF
Sbjct: 1226 AKLFF 1230
Score = 26.2 bits (56), Expect(3) = 2e-73
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Frame = +3
Query: 3 IKEHYKEDPYYSEILQKLVVKDN-----LVCAQFVKGTKLCIPEGSLR 131
+KE Y+ D + EI K ++ L KG +LCIP SLR
Sbjct: 1061 LKELYEGDDDFREIWTKCTNQEPMTDYFLTEGYLFKGNQLCIPVSSLR 1108
>gb|EMJ11389.1| hypothetical protein PRUPE_ppa017790mg [Prunus persica]
Length = 1485
Score = 192 bits (488), Expect(3) = 5e-73
Identities = 100/193 (51%), Positives = 126/193 (65%), Gaps = 4/193 (2%)
Frame = +2
Query: 488 F*RSEVRLYGLPKTIISDRNTKFLSQFWRTLWWLLGTKVQYSSAYHPQTNGHSEVVNRSL 667
F R VRL+G+P +I SDR+TKFLS FW TLW L GT + SS HPQT+G +EV NR+L
Sbjct: 1221 FFREVVRLHGVPTSITSDRDTKFLSHFWITLWRLFGTTLNRSSTAHPQTDGQTEVTNRTL 1280
Query: 668 GNLLRCLTKDHIRQWDMILPQVEFSYNGTINRFIGKSPFQVVYGRNPNQILDLMDISNQS 847
GN++R + + +QWD LPQVEF+YN ++ GKSPF +VY PN ++DL+ +
Sbjct: 1281 GNMVRSVCGEKPKQWDYALPQVEFAYNSAVHSATGKSPFSIVYTAMPNHVVDLVKLPRGQ 1340
Query: 848 NDDAIAYSKNLKE----VQDEV*TTLEHWNKHYKEVADRHRRFKEYKVGD*VMVFLCKER 1015
A KNL E V+DEV LE N YK AD+HRR K ++ GD VM+FL KER
Sbjct: 1341 QTSVAA--KNLAEEVVAVRDEVKQKLEQTNAKYKAAADKHRRVKVFQEGDSVMIFLRKER 1398
Query: 1016 FPAGTYHKLKSKK 1054
FP GTY KLK KK
Sbjct: 1399 FPVGTYSKLKPKK 1411
Score = 105 bits (262), Expect(3) = 5e-73
Identities = 59/125 (47%), Positives = 76/125 (60%), Gaps = 5/125 (4%)
Frame = +1
Query: 130 EYFISELHGRGLGGHFDWDTEFSC*KVL-----LAFNVAGCVQAC*SLSTCQVSKGLH*N 294
E I +LHG GL GH D + + L +V V+ C TCQ SKG N
Sbjct: 1101 EKLIRDLHGGGLSGHLGRDKTIAGMEERFYWPQLKRDVGTIVRKC---YTCQTSKGQVQN 1157
Query: 295 ICLYNLLPVLTAAWVDINMDFAVGLPRTARSIDSIFIVMDRFSKMAYFLACKKTQDATHV 474
LY LPV W D+ MDF +GLPRT R +DS+F+V+DRFSKMA+F+AC+KT DA+++
Sbjct: 1158 TGLYMPLPVPNDIWQDLAMDFVLGLPRTQRGVDSVFVVVDRFSKMAHFIACRKTADASNI 1217
Query: 475 ASLFF 489
A LFF
Sbjct: 1218 AKLFF 1222
Score = 26.2 bits (56), Expect(3) = 5e-73
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Frame = +3
Query: 3 IKEHYKEDPYYSEILQKLVVKDNLVC-----AQFVKGTKLCIPEGSLR 131
+KE Y+ D + EI K ++ + KG +LCIP SLR
Sbjct: 1053 LKELYEGDADFGEIWTKCTNQEPMADYFLNEGYLFKGNQLCIPVSSLR 1100
>gb|EMJ01397.1| hypothetical protein PRUPE_ppa016013mg, partial [Prunus persica]
Length = 1057
Score = 187 bits (475), Expect(3) = 9e-69
Identities = 97/193 (50%), Positives = 126/193 (65%), Gaps = 4/193 (2%)
Frame = +2
Query: 488 F*RSEVRLYGLPKTIISDRNTKFLSQFWRTLWWLLGTKVQYSSAYHPQTNGHSEVVNRSL 667
F R VRL+G+P +I S+R+TKFLS FW TLW L GT + S+ HPQT+G +EV NR+L
Sbjct: 787 FFREVVRLHGVPTSITSNRDTKFLSHFWITLWRLFGTTLNRSNTAHPQTDGQTEVTNRTL 846
Query: 668 GNLLRCLTKDHIRQWDMILPQVEFSYNGTINRFIGKSPFQVVYGRNPNQILDLMDISNQS 847
GN++R + + ++WD LPQ+EF+YN ++ GKSPF +VY PN ++DL+ +
Sbjct: 847 GNMVRSVCGEKPKRWDYALPQMEFAYNSAVHSATGKSPFSIVYTAIPNHVVDLVKLPRGQ 906
Query: 848 NDDAIAYSKNLKE----VQDEV*TTLEHWNKHYKEVADRHRRFKEYKVGD*VMVFLCKER 1015
A KNL E V+DEV LE N YK ADRHRR K ++ GD VM+FL KER
Sbjct: 907 QTSVAA--KNLAEEVVAVRDEVKQKLEQTNAKYKAAADRHRRVKVFQEGDSVMIFLRKER 964
Query: 1016 FPAGTYHKLKSKK 1054
FP GTY KLK KK
Sbjct: 965 FPVGTYSKLKPKK 977
Score = 96.7 bits (239), Expect(3) = 9e-69
Identities = 55/120 (45%), Positives = 70/120 (58%)
Frame = +1
Query: 130 EYFISELHGRGLGGHFDWDTEFSC*KVLLAFNVAGCVQAC*SLSTCQVSKGLH*NICLYN 309
E I +LHG G F W L ++ V+ C TCQ SKG N LY
Sbjct: 684 EKLIRDLHGGG----FYWPQ--------LKRDIGTIVRKC---YTCQTSKGQVQNTGLYM 728
Query: 310 LLPVLTAAWVDINMDFAVGLPRTARSIDSIFIVMDRFSKMAYFLACKKTQDATHVASLFF 489
LPV W D+ MDF +GLPRT +DS+F+V+DRFSKM +F+ACKKT DA+++A LFF
Sbjct: 729 PLPVPNDIWQDLAMDFVLGLPRTQSGVDSVFVVVDRFSKMTHFIACKKTADASNIAKLFF 788
Score = 25.8 bits (55), Expect(3) = 9e-69
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
Frame = +3
Query: 3 IKEHYKEDPYYSEILQKLV----VKDNLVCAQFV-KGTKLCIPEGSLR 131
+KE Y+ D + EI K V D + ++ KG +LCIP SLR
Sbjct: 636 LKELYEGDDDFREIWTKCTNQEPVADYFLNEGYLFKGNQLCIPVSSLR 683
>emb|CAN71532.1| hypothetical protein VITISV_018180 [Vitis vinifera]
Length = 1323
Score = 191 bits (486), Expect(2) = 3e-68
Identities = 88/191 (46%), Positives = 140/191 (73%), Gaps = 2/191 (1%)
Frame = +2
Query: 488 F*RSEVRLYGLPKTIISDRNTKFLSQFWRTLWWLLGTKVQYSSAYHPQTNGHSEVVNRSL 667
F + V+L+GLP++I+S+R+ KF+S FW+TLW LGT++++SS++HPQT+G +EVVNRSL
Sbjct: 988 FFKEVVQLHGLPQSIVSNRDVKFMSYFWKTLWVKLGTQLKFSSSFHPQTDGQTEVVNRSL 1047
Query: 668 GNLLRCLTKDHIRQWDMILPQVEFSYNGTINRFIGKSPFQVVYGRNPNQILDLMDI--SN 841
GNLLRC+ +D +R WD +LPQ EF++N + NR G PF+V YG P Q +DL+ + S
Sbjct: 1048 GNLLRCIVRDQLRNWDNVLPQAEFAFNSSTNRTTGYLPFEVAYGLKPKQPVDLIPLPTSV 1107
Query: 842 QSNDDAIAYSKNLKEVQDEV*TTLEHWNKHYKEVADRHRRFKEYKVGD*VMVFLCKERFP 1021
+++ D A++++++++ ++V ++ N++YKE D HRR+ +++ G VMV L ERF
Sbjct: 1108 RTSQDGDAFARHIRDIHEKVREKIKISNENYKEAXDAHRRYIQFQEGGLVMVRLRPERFH 1167
Query: 1022 AGTYHKLKSKK 1054
TY KL++KK
Sbjct: 1168 PSTYQKLQAKK 1178
Score = 95.1 bits (235), Expect(2) = 3e-68
Identities = 52/120 (43%), Positives = 69/120 (57%)
Frame = +1
Query: 130 EYFISELHGRGLGGHFDWDTEFSC*KVLLAFNVAGCVQAC*SLSTCQVSKGLH*NICLYN 309
++ I ELHG G+GGHF D + + + KGL N LY
Sbjct: 886 DHVIWELHGGGMGGHFRRDKTIALVEDRFFW----------------PRKGLKQNTGLYT 929
Query: 310 LLPVLTAAWVDINMDFAVGLPRTARSIDSIFIVMDRFSKMAYFLACKKTQDATHVASLFF 489
LPV W D++MDF +GLPRT R DSIF+V+DRFSKM +F+ CKKT +A++V +LFF
Sbjct: 930 PLPVPFKPWEDLSMDFVLGLPRTQRGFDSIFVVVDRFSKMTHFIPCKKTSNASYVTALFF 989
>emb|CAN77045.1| hypothetical protein VITISV_035256 [Vitis vinifera]
Length = 665
Score = 188 bits (478), Expect(3) = 2e-67
Identities = 92/197 (46%), Positives = 138/197 (70%), Gaps = 2/197 (1%)
Frame = +2
Query: 467 HMWQVFFF*RSEVRLYGLPKTIISDRNTKFLSQFWRTLWWLLGTKVQYSSAYHPQTNGHS 646
H+ ++FF + VRL+GLPKTI+SD++ KF+S FWR+LW +L TK+++SSA+HPQT G +
Sbjct: 467 HVAKLFF--KEIVRLHGLPKTIVSDQDAKFMSYFWRSLWKMLNTKLKFSSAFHPQTEGQT 524
Query: 647 EVVNRSLGNLLRCLTKDHIRQWDMILPQVEFSYNGTINRFIGKSPFQVVYGRNPNQILDL 826
EVVNRSLG+LLRCL +H+ WD ILP EF+YN ++NR G SPF++V G P + +DL
Sbjct: 525 EVVNRSLGDLLRCLVGEHVSNWDQILPMAEFAYNSSVNRSTGHSPFEIVTGLLPRKPIDL 584
Query: 827 MDISNQSND--DAIAYSKNLKEVQDEV*TTLEHWNKHYKEVADRHRRFKEYKVGD*VMVF 1000
+ + ++ +A A+SK++ ++ +V + N++YK AD R+ ++K D VMV+
Sbjct: 585 VPLPMEARPSVEADAFSKHILDLHKDVQRKIALSNENYKAQADLKRKVADFKERDMVMVW 644
Query: 1001 LCKERFPAGTYHKLKSK 1051
+ ER+P G Y KL SK
Sbjct: 645 IRPERYPKGKYKKLHSK 661
Score = 95.5 bits (236), Expect(3) = 2e-67
Identities = 58/125 (46%), Positives = 70/125 (56%), Gaps = 5/125 (4%)
Frame = +1
Query: 130 EYFISELHGRGLGGHFDWD-----TEFSC*KVLLAFNVAGCVQAC*SLSTCQVSKGLH*N 294
E I ELH RG HF D TE L +V V C TCQ SKG N
Sbjct: 352 EQVIWELHSRGXAXHFGRDKTIAMTEDHFYWPSLKRDVTKNVSKC---RTCQPSKGRKKN 408
Query: 295 ICLYNLLPVLTAAWVDINMDFAVGLPRTARSIDSIFIVMDRFSKMAYFLACKKTQDATHV 474
LY LPV W ++++DF +GLP+T R DSIF+++DRFSKM +F+ C KT DA HV
Sbjct: 409 TGLYMPLPVPHEPWQELSIDFVLGLPKTFRRHDSIFVMVDRFSKMVHFIPCSKTLDAVHV 468
Query: 475 ASLFF 489
A LFF
Sbjct: 469 AKLFF 473
Score = 21.2 bits (43), Expect(3) = 2e-67
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +3
Query: 93 KGTKLCIPEGSLR 131
KGT LC+ + SLR
Sbjct: 339 KGTXLCLXDXSLR 351
>emb|CAN79389.1| hypothetical protein VITISV_004909 [Vitis vinifera]
Length = 895
Score = 194 bits (494), Expect(2) = 7e-66
Identities = 89/191 (46%), Positives = 139/191 (72%), Gaps = 2/191 (1%)
Frame = +2
Query: 488 F*RSEVRLYGLPKTIISDRNTKFLSQFWRTLWWLLGTKVQYSSAYHPQTNGHSEVVNRSL 667
F + VRL+GLP++I+ R+ F+S FW+TLW LG ++++SS++HPQT+G +EVVNRSL
Sbjct: 561 FFKEVVRLHGLPQSIVFYRDVNFMSYFWKTLWAKLGAQLKFSSSFHPQTDGQTEVVNRSL 620
Query: 668 GNLLRCLTKDHIRQWDMILPQVEFSYNGTINRFIGKSPFQVVYGRNPNQILDLMDISN-- 841
GNLLRC+ +D +R WD +LPQ EF++N + NR IG SPF+V YG P Q +DL+ +S
Sbjct: 621 GNLLRCIVRDQLRNWDNVLPQAEFAFNSSTNRTIGHSPFEVAYGLKPKQPIDLIPLSTSV 680
Query: 842 QSNDDAIAYSKNLKEVQDEV*TTLEHWNKHYKEVADRHRRFKEYKVGD*VMVFLCKERFP 1021
+++ D A++++++++ ++V ++ N++YKE AD HRR+ +++ GD VM L ERF
Sbjct: 681 RTSQDGDAFARHIRDIHEKVREKIKISNENYKEAADAHRRYIQFQEGDLVMARLRPERFH 740
Query: 1022 AGTYHKLKSKK 1054
TY KL++KK
Sbjct: 741 PSTYQKLQAKK 751
Score = 84.3 bits (207), Expect(2) = 7e-66
Identities = 37/66 (56%), Positives = 49/66 (74%)
Frame = +1
Query: 292 NICLYNLLPVLTAAWVDINMDFAVGLPRTARSIDSIFIVMDRFSKMAYFLACKKTQDATH 471
N LY LP+ + W D++MDF +GLPR R DSIF+V+DRFSKM +F+ CKK DA++
Sbjct: 497 NTGLYTPLPIPSKPWEDLSMDFVLGLPRAQRGFDSIFVVVDRFSKMTHFIPCKKASDASY 556
Query: 472 VASLFF 489
VA+LFF
Sbjct: 557 VAALFF 562
>gb|EMJ13768.1| hypothetical protein PRUPE_ppa015570mg, partial [Prunus persica]
Length = 541
Score = 163 bits (413), Expect(3) = 7e-65
Identities = 93/193 (48%), Positives = 114/193 (59%), Gaps = 4/193 (2%)
Frame = +2
Query: 488 F*RSEVRLYGLPKTIISDRNTKFLSQFWRTLWWLLGTKVQYSSAYHPQTNGHSEVVNRSL 667
F R VRL+G+P +I SDR+TKFLS FW TLW L GT + SS HPQT+G +EV NR+L
Sbjct: 328 FFREVVRLHGIPTSITSDRDTKFLSHFWITLWRLFGTILNRSSTAHPQTDGQTEVTNRTL 387
Query: 668 GNLLRCLTKDHIRQWDMILPQVEFSYNGTINRFIGKSPFQVVYGRNPNQILDLMDISNQS 847
GN+ VEF+YN ++ GKSPF +VY PN ++DL+ +
Sbjct: 388 GNM------------------VEFAYNSAVHSATGKSPFSIVYTAIPNHVVDLVKLPRGQ 429
Query: 848 NDDAIAYSKNLKE----VQDEV*TTLEHWNKHYKEVADRHRRFKEYKVGD*VMVFLCKER 1015
A KNL E V+DEV LE N YK ADRHRR K ++ GD VM+FL KER
Sbjct: 430 QTSVAA--KNLAEEVVAVRDEVKQKLEQTNAKYKASADRHRRVKVFREGDSVMIFLRKER 487
Query: 1016 FPAGTYHKLKSKK 1054
FP TY KLK KK
Sbjct: 488 FPVDTYSKLKPKK 500
Score = 107 bits (267), Expect(3) = 7e-65
Identities = 60/125 (48%), Positives = 76/125 (60%), Gaps = 5/125 (4%)
Frame = +1
Query: 130 EYFISELHGRGLGGHFDWDTEFSC*KVL-----LAFNVAGCVQAC*SLSTCQVSKGLH*N 294
E I +LHG GL GH D + + L +V V+ C TCQ SKG N
Sbjct: 208 EKLIRDLHGGGLSGHLGCDKTIAGMEETFYWPQLKRDVGTIVRKC---YTCQTSKGQVQN 264
Query: 295 ICLYNLLPVLTAAWVDINMDFAVGLPRTARSIDSIFIVMDRFSKMAYFLACKKTQDATHV 474
LY LPV W D+ MDF +GLPRT R +DS+F+V+DRFSKMA+F+ACKKT DA+++
Sbjct: 265 TGLYVPLPVPNDIWQDLAMDFVLGLPRTQRGVDSVFVVVDRFSKMAHFIACKKTDDASNI 324
Query: 475 ASLFF 489
A LFF
Sbjct: 325 AKLFF 329
Score = 25.8 bits (55), Expect(3) = 7e-65
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Frame = +3
Query: 3 IKEHYKEDPYYSEILQKLVVKDNLVC-----AQFVKGTKLCIPEGSLR 131
+KE Y+ D + EI K ++ + KG +LCIP SLR
Sbjct: 160 LKELYEGDDDFREIWTKCTNQEPMADYFLNEGYLFKGNQLCIPVSSLR 207
>gb|EMJ21939.1| hypothetical protein PRUPE_ppa023598mg [Prunus persica]
Length = 1457
Score = 159 bits (403), Expect(3) = 3e-62
Identities = 91/191 (47%), Positives = 111/191 (58%), Gaps = 4/191 (2%)
Frame = +2
Query: 494 RSEVRLYGLPKTIISDRNTKFLSQFWRTLWWLLGTKVQYSSAYHPQTNGHSEVVNRSLGN 673
R VRL+G+P +I SDR+ KFLS FW TLW L GT + SS HPQT+ +EV R+LGN
Sbjct: 1199 REVVRLHGVPTSITSDRDAKFLSHFWITLWRLFGTTLNRSSTTHPQTDSQTEVTTRTLGN 1258
Query: 674 LLRCLTKDHIRQWDMILPQVEFSYNGTINRFIGKSPFQVVYGRNPNQILDLMDISNQSND 853
+ VEF+YN I+ GKSPF +VY PN ++DL+ +
Sbjct: 1259 M------------------VEFAYNSKIHSATGKSPFSIVYTAIPNHVVDLVKLPRGQQT 1300
Query: 854 DAIAYSKNLKE----VQDEV*TTLEHWNKHYKEVADRHRRFKEYKVGD*VMVFLCKERFP 1021
A KNL E V+DEV LE N YK ADRHRR K ++ GD VM+FL KERFP
Sbjct: 1301 SVAA--KNLAEEVVAVRDEVKQKLEQTNAKYKAAADRHRRVKVFQEGDSVMIFLRKERFP 1358
Query: 1022 AGTYHKLKSKK 1054
GTY KLK KK
Sbjct: 1359 VGTYSKLKPKK 1369
Score = 102 bits (254), Expect(3) = 3e-62
Identities = 58/125 (46%), Positives = 74/125 (59%), Gaps = 5/125 (4%)
Frame = +1
Query: 130 EYFISELHGRGLGGHFDWDTEFSC*KVL-----LAFNVAGCVQAC*SLSTCQVSKGLH*N 294
E I +LHG GL GH D + K L +V V+ C TCQ SKG N
Sbjct: 1077 EKLIQDLHGGGLSGHLGRDKTIAGMKERFYWPQLKRDVGTIVRKC---YTCQTSKGQVQN 1133
Query: 295 ICLYNLLPVLTAAWVDINMDFAVGLPRTARSIDSIFIVMDRFSKMAYFLACKKTQDATHV 474
LY LPV W D+ MDF +GLPRT R +DS+++V+DRFS MA+F+ACKKT DA+++
Sbjct: 1134 TGLYMPLPVPNDIWQDLAMDFVLGLPRTQRGMDSVYVVVDRFSNMAHFIACKKTDDASNI 1193
Query: 475 ASLFF 489
A L F
Sbjct: 1194 AKLVF 1198
Score = 25.8 bits (55), Expect(3) = 3e-62
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Frame = +3
Query: 3 IKEHYKEDPYYSEILQKLVVKDNLVC-----AQFVKGTKLCIPEGSLR 131
+KE Y+ D + EI K ++ + KG +LCIP SLR
Sbjct: 1029 LKELYEGDDDFREIWTKCTNQEPMADYFLNEGYLFKGNQLCIPVSSLR 1076
>gb|AAF79348.1|AC007887_7 F15O4.13 [Arabidopsis thaliana]
Length = 1887
Score = 161 bits (408), Expect(2) = 1e-59
Identities = 86/197 (43%), Positives = 127/197 (64%), Gaps = 2/197 (1%)
Frame = +2
Query: 467 HMWQVFFF*RSEVRLYGLPKTIISDRNTKFLSQFWRTLWWLLGTKVQYSSAYHPQTNGHS 646
H+ +FF R VRL+G+PKTI+SDR+TKFLS FW+TLW LGTK+ +S+ HPQT+G +
Sbjct: 1500 HIANLFF--REVVRLHGMPKTIVSDRDTKFLSYFWKTLWSKLGTKLLFSTTCHPQTDGQT 1557
Query: 647 EVVNRSLGNLLRCLTKDHIRQWDMILPQVEFSYNGTINRFIGKSPFQVVYGRNPNQILDL 826
EVVNR+L LLR L K +++ W+ LP VEF+YN +++ SPFQ+VYG NP LDL
Sbjct: 1558 EVVNRTLSTLLRALIKKNLKTWEDCLPHVEFAYNHSMHSASKFSPFQIVYGFNPTTPLDL 1617
Query: 827 M--DISNQSNDDAIAYSKNLKEVQDEV*TTLEHWNKHYKEVADRHRRFKEYKVGD*VMVF 1000
M +S + + D ++ ++++ ++ +E K Y + A++ R+ + GD V +
Sbjct: 1618 MPLPLSERVSLDGKKKAELVQQIHEQAKKNIEEKTKQYAKHANKSRKEVIFNEGDLVWIH 1677
Query: 1001 LCKERFPAGTYHKLKSK 1051
L KERFP KL S+
Sbjct: 1678 LRKERFPKERKSKLMSR 1694
Score = 96.7 bits (239), Expect(2) = 1e-59
Identities = 62/146 (42%), Positives = 79/146 (54%), Gaps = 8/146 (5%)
Frame = +1
Query: 76 FVHSLLRAPNSAFLKVP*EYFISELHGRGLGGHFDWDTEFSC*KVL--------LAFNVA 231
F + L PNS+ E FI E HG GL GHF KV+ + +V
Sbjct: 1371 FYDNRLCIPNSSLR----ELFIREAHGGGLMGHFGVSKTI---KVMQDHFHWPHMKRDVE 1423
Query: 232 GCVQAC*SLSTCQVSKGLH*NICLYNLLPVLTAAWVDINMDFAVGLPRTARSIDSIFIVM 411
+ C TC+ +K LY LP+ + W DI+MDF VGLPRT DSIF+V+
Sbjct: 1424 RICERC---PTCKQAKAKSQPHGLYTPLPIPSHPWNDISMDFVVGLPRTRTGKDSIFVVV 1480
Query: 412 DRFSKMAYFLACKKTQDATHVASLFF 489
DRFSKMA+F+ C KT DA H+A+LFF
Sbjct: 1481 DRFSKMAHFIPCHKTDDAIHIANLFF 1506
>gb|ADP20178.1| gag-pol polyprotein [Silene latifolia]
Length = 1518
Score = 160 bits (405), Expect(3) = 4e-59
Identities = 81/191 (42%), Positives = 124/191 (64%), Gaps = 1/191 (0%)
Frame = +2
Query: 488 F*RSEVRLYGLPKTIISDRNTKFLSQFWRTLWWLLGTKVQYSSAYHPQTNGHSEVVNRSL 667
F + VRL+G+PKTI+SDR+TKF+ FW+TLW LL TK+ +S+++HPQT+G +EV NR+L
Sbjct: 1212 FLKEIVRLHGVPKTIVSDRDTKFMGYFWKTLWKLLKTKLLFSTSHHPQTDGQTEVTNRTL 1271
Query: 668 GNLLRCLTKDHIRQWDMILPQVEFSYNGTINRFIGKSPFQVVYGRNPNQILDLMDISNQS 847
G +LRCL ++ WD+ L EF++N + G SPF+VVYG NP LDL + ++
Sbjct: 1272 GRILRCLVSKSLKDWDLKLAAAEFAFNRAPSTATGHSPFEVVYGVNPLMPLDLSSVPKEN 1331
Query: 848 -NDDAIAYSKNLKEVQDEV*TTLEHWNKHYKEVADRHRRFKEYKVGD*VMVFLCKERFPA 1024
N DA+ ++ L ++ + V +E N+ Y++ + KE++ GD V + L KERFPA
Sbjct: 1332 INLDAMKRAEQLLKLHETVKRQIERTNEQYQKHLKVPKGKKEFEPGDLVWIHLRKERFPA 1391
Query: 1025 GTYHKLKSKKN 1057
+KL + +
Sbjct: 1392 KRKNKLMPRSD 1402
Score = 87.0 bits (214), Expect(3) = 4e-59
Identities = 53/121 (43%), Positives = 69/121 (57%), Gaps = 2/121 (1%)
Frame = +1
Query: 130 EYFISELHGRGLGGHFDWDTEFSC*KVLLAF-NVAGCVQAC*S-LSTCQVSKGLH*NICL 303
+ I E+H G+GGHF + + + G VQ S CQ+SK
Sbjct: 1093 DLLIREVHSGGMGGHFGVQKTLEILQDQFYWPRMMGDVQIILRRCSKCQLSKSSF-QPGP 1151
Query: 304 YNLLPVLTAAWVDINMDFAVGLPRTARSIDSIFIVMDRFSKMAYFLACKKTQDATHVASL 483
Y LPV + W D++MDF V LPRT R DS+ +V+DRFSKMA+F+ACKKT+DA VA L
Sbjct: 1152 YTPLPVPSKPWEDLSMDFIVALPRTQRGKDSVMVVVDRFSKMAHFVACKKTEDAVSVAEL 1211
Query: 484 F 486
F
Sbjct: 1212 F 1212
Score = 30.0 bits (66), Expect(3) = 4e-59
Identities = 22/50 (44%), Positives = 29/50 (58%), Gaps = 7/50 (14%)
Frame = +3
Query: 3 IKEHYKEDPYYSE--ILQKLVVKDN----LVCAQFV-KGTKLCIPEGSLR 131
+KE YKEDP +SE I Q K+ L+ F+ +G KLC+P GS R
Sbjct: 1043 MKELYKEDPDFSEEWITQTEGHKNQGSKYLLQEGFLFQGNKLCVPRGSYR 1092
>gb|AAK51582.1|AC022352_18 Putative retroelement [Oryza sativa Japonica Group]
gi|31431012|gb|AAP52850.1| retrotransposon protein,
putative, Ty3-gypsy subclass [Oryza sativa Japonica
Group]
Length = 2447
Score = 157 bits (397), Expect(2) = 6e-58
Identities = 82/187 (43%), Positives = 119/187 (63%), Gaps = 2/187 (1%)
Frame = +2
Query: 467 HMWQVFFF*RSEVRLYGLPKTIISDRNTKFLSQFWRTLWWLLGTKVQYSSAYHPQTNGHS 646
H+ +FF R VRL+G+P TI+SDR+TKFLS FWRTLW LGTK+ +S+ HPQT+G +
Sbjct: 1309 HIADLFF--REIVRLHGVPNTIVSDRDTKFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQT 1366
Query: 647 EVVNRSLGNLLRCLTKDHIRQWDMILPQVEFSYNGTINRFIGKSPFQVVYGRNPNQILDL 826
EVVNR+L +LR + K +I+ W+ LP +EF+YN +++ PFQ+VYG P +DL
Sbjct: 1367 EVVNRTLSTMLRAVLKKNIKMWEECLPHIEFAYNRSLHSTTKMCPFQIVYGLLPRAPIDL 1426
Query: 827 MDI--SNQSNDDAIAYSKNLKEVQDEV*TTLEHWNKHYKEVADRHRRFKEYKVGD*VMVF 1000
M + S + N DA ++ + ++ + +E N YK D+ RR ++ GD V +
Sbjct: 1427 MPLPSSEKLNFDAKQRAELMLKLHETTKENIERMNAKYKFAGDKGRRELTFEPGDLVWLH 1486
Query: 1001 LCKERFP 1021
L KERFP
Sbjct: 1487 LRKERFP 1493
Score = 95.1 bits (235), Expect(2) = 6e-58
Identities = 58/126 (46%), Positives = 71/126 (56%), Gaps = 9/126 (7%)
Frame = +1
Query: 139 ISELHGRGLGGHFDWDTEFSC*KVLLAFN---------VAGCVQAC*SLSTCQVSKGLH* 291
+ E HG GL GHF +LA + V V C +TCQ +K
Sbjct: 1197 LQEAHGGGLMGHFGAKKTHD----ILASHFFWPQMRRDVGRFVARC---ATCQKAKSRLH 1249
Query: 292 NICLYNLLPVLTAAWVDINMDFAVGLPRTARSIDSIFIVMDRFSKMAYFLACKKTQDATH 471
LY LPV T W DI+MDF +GLPRT R DSIF+V+DRFSKMA+F+ C KT DA+H
Sbjct: 1250 PHGLYMPLPVPTVPWEDISMDFVLGLPRTKRGRDSIFVVVDRFSKMAHFIPCHKTDDASH 1309
Query: 472 VASLFF 489
+A LFF
Sbjct: 1310 IADLFF 1315
Score = 104 bits (260), Expect(2) = 2e-29
Identities = 63/186 (33%), Positives = 99/186 (53%), Gaps = 3/186 (1%)
Frame = +2
Query: 503 VRLYGLPKTIISDRNTKFLSQFWRTLWWLLGTKVQYSSAYHPQTNGHSEVVNRSLGNLLR 682
V L+G+PK I+SDR ++F S FW+ L LGT++ +S+AYHPQT+G +E +N+ L ++L
Sbjct: 2141 VSLHGVPKKIVSDRESQFTSHFWKKLQEELGTRLNFSTAYHPQTDGQTERLNQILEDMLH 2200
Query: 683 CLTKDHIRQWDMILPQVEFSYNGTINRFIGKSPFQVVYGRNPNQILDLMDISNQSNDDAI 862
D + WD LP EFSYN + I +P++ +YGR L + +Q + +
Sbjct: 2201 ACVLDFGKTWDKSLPYAEFSYNNSYQASIQMAPYEALYGRKCRTPL----LWDQVGESQV 2256
Query: 863 AYSKNLKEVQDEV*T---TLEHWNKHYKEVADRHRRFKEYKVGD*VMVFLCKERFPAGTY 1033
+ L+E + +V T L+ K AD RR E+ V D F+ P
Sbjct: 2257 FGTDILREAEAKVRTIWDNLKVAQSRQKSYADNRRRNLEFAVDD----FVYLRVTPLRGV 2312
Query: 1034 HKLKSK 1051
H+ ++K
Sbjct: 2313 HRFQTK 2318
Score = 52.4 bits (124), Expect(2) = 2e-29
Identities = 23/54 (42%), Positives = 34/54 (62%)
Frame = +1
Query: 334 WVDINMDFAVGLPRTARSIDSIFIVMDRFSKMAYFLACKKTQDATHVASLFFLK 495
W +I MDF GLP+T DSI++V+DR +K+A F+ K T +A L+F +
Sbjct: 2086 WDEIGMDFITGLPKTQGGYDSIWVVVDRLTKVARFIPVKTTYGGNKLAELYFAR 2139
>gb|AAW28578.1| Putative gag-pol polyprotein, identical [Solanum demissum]
Length = 1588
Score = 157 bits (398), Expect(3) = 3e-57
Identities = 81/187 (43%), Positives = 122/187 (65%), Gaps = 2/187 (1%)
Frame = +2
Query: 488 F*RSEVRLYGLPKTIISDRNTKFLSQFWRTLWWLLGTKVQYSSAYHPQTNGHSEVVNRSL 667
F + V+L+G+P+TI+SDR+ KFLS FWR LW LGTK+ +S++ HPQT+G +EVVNR+L
Sbjct: 1267 FVKEVVKLHGIPRTIVSDRDAKFLSHFWRILWGKLGTKLLFSTSCHPQTDGQTEVVNRTL 1326
Query: 668 GNLLRCLTKDHIRQWDMILPQVEFSYNGTINRFIGKSPFQVVYGRNPNQILDLMDI--SN 841
GN+LR + K + W+ LP VEF+YN T + GK+PF+VVYG NP LDL+ + ++
Sbjct: 1327 GNMLRAILKGKLTSWEDYLPIVEFAYNRTFHSSTGKTPFEVVYGFNPLTPLDLLPLPTND 1386
Query: 842 QSNDDAIAYSKNLKEVQDEV*TTLEHWNKHYKEVADRHRRFKEYKVGD*VMVFLCKERFP 1021
+N D + +K++ ++ +E NK ++ R++ +K GD V V + KERFP
Sbjct: 1387 FANLDGKKKADMMKKIHEQTRLAIEKKNKEVALRRNKGRKYVIFKPGDLVWVHMRKERFP 1446
Query: 1022 AGTYHKL 1042
+ KL
Sbjct: 1447 SKRKTKL 1453
Score = 88.6 bits (218), Expect(3) = 3e-57
Identities = 53/121 (43%), Positives = 65/121 (53%), Gaps = 2/121 (1%)
Frame = +1
Query: 130 EYFISELHGRGLGGHFDWDT--EFSC*KVLLAFNVAGCVQAC*SLSTCQVSKGLH*NICL 303
E F+ E H GL GHF E + C C+ +K L
Sbjct: 1147 ELFVREAHCGGLMGHFGVPKTLEILSEHFYWPSMRKDVEKVCSYCLECKQAKSRTLPHGL 1206
Query: 304 YNLLPVLTAAWVDINMDFAVGLPRTARSIDSIFIVMDRFSKMAYFLACKKTQDATHVASL 483
Y LPV + W+DI+MDF +GLPRT DSIF+V+DRFSKMA F+ CKKT DA+HVA L
Sbjct: 1207 YTPLPVSNSPWIDISMDFILGLPRTKYGKDSIFVVVDRFSKMARFIPCKKTNDASHVADL 1266
Query: 484 F 486
F
Sbjct: 1267 F 1267
Score = 25.0 bits (53), Expect(3) = 3e-57
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Frame = +3
Query: 3 IKEHYKEDPYYSEILQKLVV----KDNLVCAQFVKGTKLCIPEGSLRVFYI 143
IK Y D + EI + + K NL K KLC+P SLR ++
Sbjct: 1100 IKFLYANDSDFGEIFAECKLGPFEKFNLQDEFLFKENKLCVPNCSLRELFV 1150
>gb|AAM94350.1| gag-pol polyprotein [Zea mays]
Length = 1618
Score = 155 bits (392), Expect(2) = 3e-57
Identities = 80/187 (42%), Positives = 119/187 (63%), Gaps = 2/187 (1%)
Frame = +2
Query: 467 HMWQVFFF*RSEVRLYGLPKTIISDRNTKFLSQFWRTLWWLLGTKVQYSSAYHPQTNGHS 646
H+ +FF R VRL+G+P TI+SDR+ KFLS FWRTLW LGTK+ +S+ HPQT+G +
Sbjct: 1312 HIADLFF--REIVRLHGVPNTIVSDRDAKFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQT 1369
Query: 647 EVVNRSLGNLLRCLTKDHIRQWDMILPQVEFSYNGTINRFIGKSPFQVVYGRNPNQILDL 826
EVVNR+L +LR + K +I+ W+ LP +EF+YN +++ PFQ+VYG P +DL
Sbjct: 1370 EVVNRTLSTMLRAVLKKNIKMWEDCLPHIEFAYNRSLHSTTKMCPFQIVYGLLPRAPIDL 1429
Query: 827 MDI--SNQSNDDAIAYSKNLKEVQDEV*TTLEHWNKHYKEVADRHRRFKEYKVGD*VMVF 1000
M + S + N DA ++ + ++ + +E N YK +D+ R+ ++ GD V +
Sbjct: 1430 MPLPSSEKLNFDATRRAELMLKLHETTKENIERMNARYKFASDKGRKEINFEPGDLVWLH 1489
Query: 1001 LCKERFP 1021
L KERFP
Sbjct: 1490 LRKERFP 1496
Score = 94.7 bits (234), Expect(2) = 3e-57
Identities = 52/109 (47%), Positives = 66/109 (60%)
Frame = +1
Query: 163 LGGHFDWDTEFSC*KVLLAFNVAGCVQAC*SLSTCQVSKGLH*NICLYNLLPVLTAAWVD 342
L GHF W + +V V C +TCQ +K LY LPV +A W D
Sbjct: 1221 LAGHFFWPK--------MRRDVVRLVARC---TTCQKAKSRLNPHGLYLPLPVPSAPWED 1269
Query: 343 INMDFAVGLPRTARSIDSIFIVMDRFSKMAYFLACKKTQDATHVASLFF 489
I+MDF +GLPRT + DS+F+V+DRFSKMA+F+ C KT DATH+A LFF
Sbjct: 1270 ISMDFVLGLPRTRKGRDSVFVVVDRFSKMAHFIPCHKTDDATHIADLFF 1318
>gb|EMJ21583.1| hypothetical protein PRUPE_ppa021778mg [Prunus persica]
Length = 1384
Score = 194 bits (493), Expect(3) = 3e-57
Identities = 101/193 (52%), Positives = 126/193 (65%), Gaps = 4/193 (2%)
Frame = +2
Query: 488 F*RSEVRLYGLPKTIISDRNTKFLSQFWRTLWWLLGTKVQYSSAYHPQTNGHSEVVNRSL 667
F R VRL+G+P +I SDR+TKFLS FW TLW L GT + SS HPQT+G +EV NR+L
Sbjct: 1120 FFREVVRLHGVPTSITSDRDTKFLSHFWITLWRLFGTTLNRSSTAHPQTDGQTEVTNRTL 1179
Query: 668 GNLLRCLTKDHIRQWDMILPQVEFSYNGTINRFIGKSPFQVVYGRNPNQILDLMDISNQS 847
GN++R + + +QWD LPQ EF+YN ++ GKSPF +VY PN ++DL+ +
Sbjct: 1180 GNMVRSVCGEKPKQWDYALPQAEFAYNSAVHSATGKSPFSIVYTATPNHVVDLVKLPRGQ 1239
Query: 848 NDDAIAYSKNLKE----VQDEV*TTLEHWNKHYKEVADRHRRFKEYKVGD*VMVFLCKER 1015
A KNL E V+DEV LE N YK ADRHRR K ++ GD VM+FL KER
Sbjct: 1240 QTSVAA--KNLAEEVVAVRDEVKQKLEQTNAKYKAAADRHRRVKVFQEGDSVMIFLRKER 1297
Query: 1016 FPAGTYHKLKSKK 1054
FPAGTY KLK KK
Sbjct: 1298 FPAGTYSKLKPKK 1310
Score = 50.8 bits (120), Expect(3) = 3e-57
Identities = 42/125 (33%), Positives = 51/125 (40%), Gaps = 5/125 (4%)
Frame = +1
Query: 130 EYFISELHGRGLGGHFDWDTEFSC*KVL-----LAFNVAGCVQAC*SLSTCQVSKGLH*N 294
E I +LHG GL GH D + + L +V V+ C TCQ SKG N
Sbjct: 1026 EKLIQDLHGGGLSGHLGRDKTIAGMEERFYWPQLKRDVGTIVRKC---YTCQTSKGQVQN 1082
Query: 295 ICLYNLLPVLTAAWVDINMDFAVGLPRTARSIDSIFIVMDRFSKMAYFLACKKTQDATHV 474
LY LPV W D+ MDF LACKK DA+++
Sbjct: 1083 TRLYMPLPVPNDIWQDLAMDFV--------------------------LACKKIADASNI 1116
Query: 475 ASLFF 489
A LFF
Sbjct: 1117 AKLFF 1121
Score = 25.8 bits (55), Expect(3) = 3e-57
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Frame = +3
Query: 3 IKEHYKEDPYYSEILQKLVVKDNLVC-----AQFVKGTKLCIPEGSLR 131
+KE Y+ D + EI K ++ + KG +LCIP SLR
Sbjct: 978 LKELYEGDADFREIWTKCTNQEPMADYFLNEGYLFKGNQLCIPVSSLR 1025
>gb|AAW28577.1| Putative gag-pol polyprotein, identical [Solanum demissum]
Length = 1588
Score = 157 bits (398), Expect(3) = 6e-57
Identities = 81/187 (43%), Positives = 122/187 (65%), Gaps = 2/187 (1%)
Frame = +2
Query: 488 F*RSEVRLYGLPKTIISDRNTKFLSQFWRTLWWLLGTKVQYSSAYHPQTNGHSEVVNRSL 667
F + V+L+G+P+TI+SDR+ KFLS FWR LW LGTK+ +S++ HPQT+G +EVVNR+L
Sbjct: 1267 FVKEVVKLHGIPRTIVSDRDAKFLSHFWRILWGKLGTKLLFSTSCHPQTDGQTEVVNRTL 1326
Query: 668 GNLLRCLTKDHIRQWDMILPQVEFSYNGTINRFIGKSPFQVVYGRNPNQILDLMDI--SN 841
GN+LR + K + W+ LP VEF+YN T + GK+PF+VVYG NP LDL+ + ++
Sbjct: 1327 GNMLRAILKGKLTSWEDYLPIVEFAYNRTFHSSTGKTPFEVVYGFNPLTPLDLLPLPTND 1386
Query: 842 QSNDDAIAYSKNLKEVQDEV*TTLEHWNKHYKEVADRHRRFKEYKVGD*VMVFLCKERFP 1021
+N D + +K++ ++ +E NK ++ R++ +K GD V V + KERFP
Sbjct: 1387 FANLDGKKKADMMKKIHEQTRLAIEKKNKEVALRRNKGRKYVIFKPGDLVWVHMRKERFP 1446
Query: 1022 AGTYHKL 1042
+ KL
Sbjct: 1447 SKRKTKL 1453
Score = 87.4 bits (215), Expect(3) = 6e-57
Identities = 53/121 (43%), Positives = 64/121 (52%), Gaps = 2/121 (1%)
Frame = +1
Query: 130 EYFISELHGRGLGGHFDWDT--EFSC*KVLLAFNVAGCVQAC*SLSTCQVSKGLH*NICL 303
E F+ E H GL GHF E + C C+ +K L
Sbjct: 1147 ELFVREAHCGGLMGHFGVPKTLEILSEHFYWPSMRKDVEKVCSYCLECKQAKSRTLPHGL 1206
Query: 304 YNLLPVLTAAWVDINMDFAVGLPRTARSIDSIFIVMDRFSKMAYFLACKKTQDATHVASL 483
Y LPV W+DI+MDF +GLPRT DSIF+V+DRFSKMA F+ CKKT DA+HVA L
Sbjct: 1207 YTPLPVSNFPWIDISMDFILGLPRTKYGKDSIFVVVDRFSKMARFIPCKKTNDASHVADL 1266
Query: 484 F 486
F
Sbjct: 1267 F 1267
Score = 25.0 bits (53), Expect(3) = 6e-57
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Frame = +3
Query: 3 IKEHYKEDPYYSEILQKLVV----KDNLVCAQFVKGTKLCIPEGSLRVFYI 143
IK Y D + EI + + K NL K KLC+P SLR ++
Sbjct: 1100 IKFLYANDSDFGEIFAECKLGPFEKFNLQDEFLFKENKLCVPNCSLRELFV 1150
>gb|AAQ56338.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
Length = 1619
Score = 150 bits (380), Expect(2) = 2e-55
Identities = 80/187 (42%), Positives = 116/187 (62%), Gaps = 2/187 (1%)
Frame = +2
Query: 467 HMWQVFFF*RSEVRLYGLPKTIISDRNTKFLSQFWRTLWWLLGTKVQYSSAYHPQTNGHS 646
H+ +FF R VRL+G+P TI+SDR+TKFLS FWRTLW LGTK+ +S+ HPQT+G
Sbjct: 1288 HIADLFF--REIVRLHGVPNTIVSDRDTKFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQI 1345
Query: 647 EVVNRSLGNLLRCLTKDHIRQWDMILPQVEFSYNGTINRFIGKSPFQVVYGRNPNQILDL 826
EVVNR+L +LR + K +I+ W+ LP +EF+ N +++ PFQ+VY P +DL
Sbjct: 1346 EVVNRTLSTMLRAVLKKNIKMWEECLPHIEFACNRSLHSTTKMCPFQIVYSLLPRAPIDL 1405
Query: 827 MDI--SNQSNDDAIAYSKNLKEVQDEV*TTLEHWNKHYKEVADRHRRFKEYKVGD*VMVF 1000
M + S + N DA ++ + ++ + +E N YK D+ RR ++ GD V +
Sbjct: 1406 MPLPSSEKLNFDAKQRAELMLKLHETTKENIERMNAKYKFAGDKGRRELNFEPGDLVWLH 1465
Query: 1001 LCKERFP 1021
L KERFP
Sbjct: 1466 LRKERFP 1472
Score = 93.6 bits (231), Expect(2) = 2e-55
Identities = 57/126 (45%), Positives = 70/126 (55%), Gaps = 9/126 (7%)
Frame = +1
Query: 139 ISELHGRGLGGHFDWDTEFSC*KVLLAFN---------VAGCVQAC*SLSTCQVSKGLH* 291
+ E HG GL GHF +LA + V V C +TCQ +K
Sbjct: 1176 LQEAHGGGLMGHFGAKKTHD----ILASHFFWPQMRRDVGRFVARC---ATCQKAKSRLH 1228
Query: 292 NICLYNLLPVLTAAWVDINMDFAVGLPRTARSIDSIFIVMDRFSKMAYFLACKKTQDATH 471
LY LPV T W DI+MDF +GLPRT R DSIF+V+DRFSKM +F+ C KT DA+H
Sbjct: 1229 PHGLYMPLPVPTVPWEDISMDFVLGLPRTKRGRDSIFVVVDRFSKMVHFIPCHKTDDASH 1288
Query: 472 VASLFF 489
+A LFF
Sbjct: 1289 IADLFF 1294
>gb|EMJ28035.1| hypothetical protein PRUPE_ppa017565mg, partial [Prunus persica]
Length = 914
Score = 176 bits (446), Expect(2) = 6e-55
Identities = 93/191 (48%), Positives = 121/191 (63%), Gaps = 2/191 (1%)
Frame = +2
Query: 488 F*RSEVRLYGLPKTIISDRNTKFLSQFWRTLWWLLGTKVQYSSAYHPQTNGHSEVVNRSL 667
F + VRL+G+P +I SDR+TKFLS FW TLW + GT + SS HPQTNG +EV NR+L
Sbjct: 691 FFKEVVRLHGVPTSITSDRDTKFLSHFWITLWGMFGTTLNSSSTTHPQTNGQTEVTNRTL 750
Query: 668 GNLLRCLTKDHIRQWDMILPQVEFSYNGTINRFIGKSPFQVVYGRNPNQILDLMDISNQS 847
GN++R + K+ +Q D L QVEF+YN I+ KSPF +VY PN ++DL+ +
Sbjct: 751 GNMVRSICKEKPKQRDYALSQVEFAYNNAIHSATEKSPFSIVYTIVPNHVVDLVKLPRGQ 810
Query: 848 NDDAIA--YSKNLKEVQDEV*TTLEHWNKHYKEVADRHRRFKEYKVGD*VMVFLCKERFP 1021
+K + V+DEV LE N YK AD+HRR + ++ GD VMVFL ERF
Sbjct: 811 KTSVAEGNLAKEVVAVRDEVKQKLEQTNAKYKAAADKHRRVRVFQEGDFVMVFLRMERFR 870
Query: 1022 AGTYHKLKSKK 1054
AGTY KLK KK
Sbjct: 871 AGTYSKLKPKK 881
Score = 66.2 bits (160), Expect(2) = 6e-55
Identities = 47/120 (39%), Positives = 60/120 (50%), Gaps = 5/120 (4%)
Frame = +1
Query: 145 ELHGRGLGGHFDWDT-----EFSC*KVLLAFNVAGCVQAC*SLSTCQVSKGLH*NICLYN 309
+LHG GL G+ T E L V V+ C CQV KG N LY
Sbjct: 587 DLHGGGLSGYLGRYTTIVGLEERFYWPQLKRYVGTIVRKC---YICQVLKGQVQNTVLYM 643
Query: 310 LLPVLTAAWVDINMDFAVGLPRTARSIDSIFIVMDRFSKMAYFLACKKTQDATHVASLFF 489
LPV W D+ MDF + +F+V+DRF KMA+F+ CKKT DA+++A LFF
Sbjct: 644 PLPVPNDIWQDLAMDFVL-----------LFMVVDRFLKMAHFIVCKKTADASNIAKLFF 692
>gb|ABF97027.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 889
Score = 150 bits (378), Expect(2) = 8e-55
Identities = 80/197 (40%), Positives = 122/197 (61%), Gaps = 2/197 (1%)
Frame = +2
Query: 467 HMWQVFFF*RSEVRLYGLPKTIISDRNTKFLSQFWRTLWWLLGTKVQYSSAYHPQTNGHS 646
H+ +FF R VRL+G+P TI+SDR+TKFLS FWRTLW LGTK+ +S+ HPQT+G +
Sbjct: 650 HVADLFF--REIVRLHGVPNTIVSDRDTKFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQT 707
Query: 647 EVVNRSLGNLLRCLTKDHIRQWDMILPQVEFSYNGTINRFIGKSPFQVVYGRNPNQILDL 826
EVVNR+L +LR + K +I+ W+ LP VEF+YN + + K PF++VYG P +DL
Sbjct: 708 EVVNRTLSTMLRAVLKKNIKMWEECLPHVEFAYNHSQHSTTKKCPFEIVYGLLPRAPIDL 767
Query: 827 MDI--SNQSNDDAIAYSKNLKEVQDEV*TTLEHWNKHYKEVADRHRRFKEYKVGD*VMVF 1000
+ + S + N DA ++ + ++ + +E N YK + ++ ++ GD V +
Sbjct: 768 LPLPTSERVNFDAKHRAELMLKLHETTKENIERMNIKYKLAGSKGKKHVAFEPGDLVWLH 827
Query: 1001 LCKERFPAGTYHKLKSK 1051
L K+RFP KL+ +
Sbjct: 828 LRKDRFPNLRKSKLQPR 844
Score = 92.0 bits (227), Expect(2) = 8e-55
Identities = 57/124 (45%), Positives = 71/124 (57%), Gaps = 7/124 (5%)
Frame = +1
Query: 139 ISELHGRGLGGHFDWDT-------EFSC*KVLLAFNVAGCVQAC*SLSTCQVSKGLH*NI 297
+ E HG GL GHF F K + +V V C +TCQ +K
Sbjct: 538 LQEAHGGGLMGHFGVKKTEDILADHFFWPK--MRRDVERFVARC---TTCQKAKSRLNPH 592
Query: 298 CLYNLLPVLTAAWVDINMDFAVGLPRTARSIDSIFIVMDRFSKMAYFLACKKTQDATHVA 477
LY LPV + W DI+MDF +GLPRT + DSIF+V+DRFSKMA+F+ C K+ DATHVA
Sbjct: 593 GLYMPLPVPSVPWEDISMDFVLGLPRTKKGRDSIFVVVDRFSKMAHFIPCHKSDDATHVA 652
Query: 478 SLFF 489
LFF
Sbjct: 653 DLFF 656
>gb|AAK91332.1|AC090441_14 Putative gag-pol polyprotein [Oryza sativa Japonica Group]
gi|15217296|gb|AAK92640.1|AC079634_1 Putative
retroelement [Oryza sativa Japonica Group]
gi|31431373|gb|AAP53161.1| retrotransposon protein,
putative, Ty3-gypsy subclass [Oryza sativa Japonica
Group]
Length = 1708
Score = 151 bits (381), Expect(2) = 1e-54
Identities = 78/187 (41%), Positives = 119/187 (63%), Gaps = 2/187 (1%)
Frame = +2
Query: 467 HMWQVFFF*RSEVRLYGLPKTIISDRNTKFLSQFWRTLWWLLGTKVQYSSAYHPQTNGHS 646
H+ +FF R VRL+G+P TI+SDR+TKFLS FWRTLW LGTK+ +S+ HPQT+G +
Sbjct: 1337 HVADLFF--REIVRLHGVPNTIVSDRDTKFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQT 1394
Query: 647 EVVNRSLGNLLRCLTKDHIRQWDMILPQVEFSYNGTINRFIGKSPFQVVYGRNPNQILDL 826
EVVNR+L +LR + K +I+ W+ LP VEF+YN + + K PF++VYG P +DL
Sbjct: 1395 EVVNRTLSTMLRAVLKKNIKMWEECLPHVEFAYNRSQHSTTKKCPFEIVYGLLPRAPIDL 1454
Query: 827 MDI--SNQSNDDAIAYSKNLKEVQDEV*TTLEHWNKHYKEVADRHRRFKEYKVGD*VMVF 1000
+ + S + N DA +++ + ++ + +E N YK + ++ ++ GD V +
Sbjct: 1455 LPLPTSERVNFDAKYHAELMLKLHETTKENIERMNIKYKLAGSKGKKHVAFEPGDLVWLH 1514
Query: 1001 LCKERFP 1021
L K+RFP
Sbjct: 1515 LRKDRFP 1521
Score = 90.5 bits (223), Expect(2) = 1e-54
Identities = 57/124 (45%), Positives = 71/124 (57%), Gaps = 7/124 (5%)
Frame = +1
Query: 139 ISELHGRGLGGHFDWDT-------EFSC*KVLLAFNVAGCVQAC*SLSTCQVSKGLH*NI 297
+ E HG GL GHF F K + +V V C +TCQ +K
Sbjct: 1225 LQEAHGGGLMGHFGVKKTEDILADHFFWPK--MRRDVERFVARC---TTCQKAKLRLNPH 1279
Query: 298 CLYNLLPVLTAAWVDINMDFAVGLPRTARSIDSIFIVMDRFSKMAYFLACKKTQDATHVA 477
LY LPV + W DI+MDF +GLPRT + DSIF+V+DRFSKMA+F+ C K+ DATHVA
Sbjct: 1280 GLYMPLPVPSVPWEDISMDFVLGLPRTKKGRDSIFVVVDRFSKMAHFIPCHKSDDATHVA 1339
Query: 478 SLFF 489
LFF
Sbjct: 1340 DLFF 1343
>dbj|BAA89466.1| gag-pol polyprotein [Oryza sativa Indica Group]
Length = 1587
Score = 149 bits (377), Expect(2) = 2e-54
Identities = 78/187 (41%), Positives = 118/187 (63%), Gaps = 2/187 (1%)
Frame = +2
Query: 467 HMWQVFFF*RSEVRLYGLPKTIISDRNTKFLSQFWRTLWWLLGTKVQYSSAYHPQTNGHS 646
H+ +FF R VRL+G+P TI+SDR+TKFLS FWRTLW LGTK+ +S+ HPQT+G +
Sbjct: 1337 HVADLFF--REIVRLHGVPNTIVSDRDTKFLSHFWRTLWAKLGTKLLFSTTCHPQTDGQT 1394
Query: 647 EVVNRSLGNLLRCLTKDHIRQWDMILPQVEFSYNGTINRFIGKSPFQVVYGRNPNQILDL 826
EVVNR+L +LR + K +I+ W+ LP VEF+YN + + K PF++VYG P +DL
Sbjct: 1395 EVVNRTLSTMLRAVLKKNIKMWEECLPHVEFAYNRSQHSTTKKCPFEIVYGLLPRAPIDL 1454
Query: 827 MDI--SNQSNDDAIAYSKNLKEVQDEV*TTLEHWNKHYKEVADRHRRFKEYKVGD*VMVF 1000
+ + S + N DA ++ + ++ + +E N YK + ++ ++ GD V +
Sbjct: 1455 LPLPTSERVNFDAKYRAELMLKLHETTKENIERMNIKYKLAGSKGKKHVAFEPGDLVWLH 1514
Query: 1001 LCKERFP 1021
L K+RFP
Sbjct: 1515 LRKDRFP 1521
Score = 91.3 bits (225), Expect(2) = 2e-54
Identities = 57/126 (45%), Positives = 72/126 (57%), Gaps = 9/126 (7%)
Frame = +1
Query: 139 ISELHGRGLGGHFDWDTEFSC*KVLLAFN---------VAGCVQAC*SLSTCQVSKGLH* 291
+ E HG GL GHF + +LA + V V C +TCQ +K
Sbjct: 1225 LQEAHGGGLMGHFGVKKM----EDILADHFFWPKKRRDVERFVARC---TTCQKAKSRLN 1277
Query: 292 NICLYNLLPVLTAAWVDINMDFAVGLPRTARSIDSIFIVMDRFSKMAYFLACKKTQDATH 471
LY LPV + W DI+MDF +GLPRT + DSIF+V+DRFSKMA+F+ C K+ DATH
Sbjct: 1278 PHGLYMPLPVPSVPWEDISMDFVLGLPRTKKGRDSIFVVVDRFSKMAHFIPCHKSDDATH 1337
Query: 472 VASLFF 489
VA LFF
Sbjct: 1338 VADLFF 1343