BLASTX nr result
ID: Catharanthus22_contig00015370
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus22_contig00015370
(1236 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulga... 130 7e-49
ref|XP_006584238.1| PREDICTED: uncharacterized protein LOC102664... 114 1e-47
ref|XP_006579213.1| PREDICTED: uncharacterized protein LOC102670... 183 1e-43
gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana] 101 5e-38
ref|XP_006582615.1| PREDICTED: uncharacterized protein LOC102665... 140 9e-36
ref|XP_006590026.1| PREDICTED: uncharacterized protein LOC102660... 154 6e-35
ref|XP_004293181.1| PREDICTED: uncharacterized protein LOC101298... 91 2e-33
gb|AAD15471.1| putative non-LTR retroelement reverse transcripta... 88 5e-32
gb|AAC95175.1| putative non-LTR retroelement reverse transcripta... 97 2e-31
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ... 91 2e-31
gb|AAF87143.1|AC002423_8 T23E23.16 [Arabidopsis thaliana] 91 3e-31
gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana] 89 6e-31
ref|XP_006579104.1| PREDICTED: uncharacterized protein LOC102661... 130 1e-30
ref|XP_006586426.1| PREDICTED: putative ribonuclease H protein A... 100 5e-30
ref|XP_006584390.1| PREDICTED: putative ribonuclease H protein A... 137 7e-30
emb|CAB45965.1| putative reverse transcriptase [Arabidopsis thal... 93 2e-29
ref|XP_006584200.1| PREDICTED: putative ribonuclease H protein A... 134 8e-29
emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulga... 128 2e-28
dbj|BAB08270.1| non-LTR retroelement reverse transcriptase-like ... 93 8e-27
gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm,... 84 7e-26
>emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1110
Score = 130 bits (327), Expect(4) = 7e-49
Identities = 71/235 (30%), Positives = 118/235 (50%), Gaps = 10/235 (4%)
Frame = +3
Query: 372 WSGFNLSYAGRVEVICSIVQGIESFLLGVLPISAAVLDRLTSLCRRFLWGNRY-----AK 536
W LSYAGR+++I SI+ ++++ + P+S V+ + +CR+FLW + A
Sbjct: 785 WMAKLLSYAGRLQLIKSILSSMQNYWAHIFPLSKKVIQAVEKVCRKFLWTGKTEETKKAP 844
Query: 537 VAWSIICLSKEQGGLGLRVARRWNDALLAETLWNIHFKKDTLWCKWVHHFYIKTGTIWTV 716
VAW+ I K +GG + + WN A + + LW I FK+D LW +W+H +YIK I TV
Sbjct: 845 VAWATIQRPKSRGGWNVINMKYWNRAAMLKLLWAIEFKRDKLWVRWIHSYYIKRQDILTV 904
Query: 717 LVRKDIPPLFKQLLSIRDKLVETLGSTNAAIERISSW---IVGDNINASMAYEFFKPQGQ 887
+ + ++++ RD L I W +GD + AY+ G+
Sbjct: 905 NISNQTTWILRKIVKARDHL-----------SNIGDWDEICIGDKFSMKKAYKKISENGE 953
Query: 888 LLTWSKIVWNPIIPSKFSFYLWLVVLERVLTMDRLHFLGT--DRMCKLCEQTEKT 1046
+ W +++ N K F LW+++ ER+ T+DR+ G D +LC +T
Sbjct: 954 RVRWRRLICNNYATPKSKFILWMMLHERLPTVDRISRWGVQCDLNYRLCRNDGET 1008
Score = 59.7 bits (143), Expect(4) = 7e-49
Identities = 27/71 (38%), Positives = 43/71 (60%)
Frame = +1
Query: 151 QELGEASGL*ANSLKSNIFLAGVEEHERSKILDYMGFTIGSMPSRYLGIPLSGKYLKVAD 330
Q+ ASGL A+ KSNI+ GV++ ++ DY+ +G +P RYLG+PL+ K L A
Sbjct: 711 QKFSHASGLAASHEKSNIYFCGVDDETARELADYVHMQLGELPFRYLGVPLTSKKLTYAQ 770
Query: 331 YSPLLDKVAGQ 363
PL++ + +
Sbjct: 771 CKPLVEMITNR 781
Score = 45.1 bits (105), Expect(4) = 7e-49
Identities = 18/28 (64%), Positives = 23/28 (82%)
Frame = +3
Query: 36 FNFHAKREKLNVSHLAFADDLMIFARGD 119
FNFH K E+LN++HL FADDL++F R D
Sbjct: 672 FNFHPKCERLNITHLMFADDLLMFCRAD 699
Score = 28.5 bits (62), Expect(4) = 7e-49
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +2
Query: 1034 D*EDLSHLFFACPFAVKVWNDI 1099
D E + HLFF+C ++ VW+ I
Sbjct: 1005 DGETIQHLFFSCSYSAGVWSKI 1026
>ref|XP_006584238.1| PREDICTED: uncharacterized protein LOC102664824 [Glycine max]
Length = 939
Score = 114 bits (285), Expect(4) = 1e-47
Identities = 67/233 (28%), Positives = 111/233 (47%), Gaps = 7/233 (3%)
Frame = +3
Query: 363 ILAWSGFNLSYAGRVEVICSIVQGIESFLLGVLPISAAVLDRLTSLCRRFLW-GN----R 527
I WS LSYAGRV++I S++ +F + LP+ V+ R+ ++CR FLW GN R
Sbjct: 610 ITHWSAGLLSYAGRVQLIQSVIFATINFWMQCLPLPKFVIMRINAICRSFLWIGNSNISR 669
Query: 528 YAKVAWSIICLSKEQGGLGLRVARRWNDALLAETLWNIHFKKDTLWCKWVHHFYIKTGTI 707
+ +AW +C K GGL + WN + + LWN+ K D LW KW+H +YI+ +I
Sbjct: 670 KSPIAWEKVCSPKINGGLNIINLAIWNKISILKLLWNVCNKSDNLWIKWLHTYYIRGQSI 729
Query: 708 WTVLVRKDIPPLFKQLLSIRDKLVETLGSTNAAIERISSWIVGDNINASMAYEFFKPQGQ 887
W+++++K + ++ +R L++ + D Y + +
Sbjct: 730 WSMVLKKSHSWIMSSMMKLRPLLLQYQSR------------MQDVFKMKKIYLALFEESE 777
Query: 888 LLTWSKIVWNPIIPSKFSFYLWLVVLERVLTMDRL--HFLGTDRMCKLCEQTE 1040
++W ++ N + + F LW R+ + DRL L D C C E
Sbjct: 778 KMSWRTLMCNNLARPRALFCLWQACHFRLASKDRLIKFGLNVDANCAFCSSME 830
Score = 61.2 bits (147), Expect(4) = 1e-47
Identities = 34/92 (36%), Positives = 47/92 (51%)
Frame = +1
Query: 112 GVIFSQSRLCDVLQELGEASGL*ANSLKSNIFLAGVEEHERSKILDYMGFTIGSMPSRYL 291
G I S + D + GL N K NI+ V+ + + ++L GF G MP RYL
Sbjct: 526 GDIGSVQIMLDKFNTFLRSMGLHVNPSKCNIYCGSVDINVKEQLLLISGFKEGKMPFRYL 585
Query: 292 GIPLSGKYLKVADYSPLLDKVAGQYLHGRASI 387
GIPLS K L + Y L+DK+ G+ H A +
Sbjct: 586 GIPLSSKKLNIKHYQVLIDKIVGRITHWSAGL 617
Score = 47.4 bits (111), Expect(4) = 1e-47
Identities = 19/35 (54%), Positives = 30/35 (85%)
Frame = +3
Query: 36 FNFHAKREKLNVSHLAFADDLMIFARGDFLSVKIV 140
FN+H+K EK+ +++L FADDL++F+RGD SV+I+
Sbjct: 500 FNYHSKCEKMKITNLCFADDLLLFSRGDIGSVQIM 534
Score = 36.6 bits (83), Expect(4) = 1e-47
Identities = 15/65 (23%), Positives = 26/65 (40%)
Frame = +2
Query: 1040 EDLSHLFFACPFAVKVWNDIRNWAGLRRSMTISSSSFKWLIKESCGTSWKRNWRKLCPAA 1219
E HLFF C +W + NW + + S W+ ++ G W+ K
Sbjct: 830 ESHEHLFFGCIELKTIWTAVLNWLQIIHMPSTWSEELNWITRKCKGKGWRAMLLKCAFTE 889
Query: 1220 IVYYL 1234
+Y++
Sbjct: 890 TIYHI 894
>ref|XP_006579213.1| PREDICTED: uncharacterized protein LOC102670237 [Glycine max]
Length = 383
Score = 183 bits (464), Expect = 1e-43
Identities = 93/250 (37%), Positives = 140/250 (56%), Gaps = 5/250 (2%)
Frame = +3
Query: 372 WSGFNLSYAGRVEVICSIVQGIESFLLGVLPISAAVLDRLTSLCRRFLWGNRYAK----- 536
WS +LSYAG+VE+I +++QGI +F + + P+ +VLD + + CR FLWG
Sbjct: 111 WSRKSLSYAGKVELIRAVIQGIANFWMSIFPLPQSVLDTIIATCRNFLWGKADGGKIKPL 170
Query: 537 VAWSIICLSKEQGGLGLRVARRWNDALLAETLWNIHFKKDTLWCKWVHHFYIKTGTIWTV 716
VAWS +C K++GGLGL + WN ALL+ LW++H KKD+LW + VHH+Y K G +W
Sbjct: 171 VAWSEVCTPKKEGGLGLFNLKDWNIALLSCILWDLHSKKDSLWVRLVHHYYFKGGNVWD- 229
Query: 717 LVRKDIPPLFKQLLSIRDKLVETLGSTNAAIERISSWIVGDNINASMAYEFFKPQGQLLT 896
+ +F + IRD ++ + A ++SW + A Y++ + ++
Sbjct: 230 FISSSSDSVF---IHIRDIIISKEENIEVAKLMLNSWGCNEQTLAGKMYDYIRGTRPVVH 286
Query: 897 WSKIVWNPIIPSKFSFYLWLVVLERVLTMDRLHFLGTDRMCKLCEQTEKTFLTSSLHAPL 1076
WS I+WNP+IPSK SF LWL R+L +DR FL +C LC ++ HA L
Sbjct: 287 WSSIIWNPVIPSKMSFILWLATKNRLLALDRAAFLNKGFLCPLCTNEAES------HAHL 340
Query: 1077 LLKYGTTLEI 1106
T+L +
Sbjct: 341 FFSCRTSLRV 350
>gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]
Length = 1213
Score = 101 bits (251), Expect(3) = 5e-38
Identities = 50/138 (36%), Positives = 77/138 (55%), Gaps = 5/138 (3%)
Frame = +3
Query: 369 AWSGFNLSYAGRVEVICSIVQGIESFLLGVLPISAAVLDRLTSLCRRFLW-GN----RYA 533
+W LS+AGR+++I S++ G +F + + + R+ SLC RFLW GN +
Sbjct: 792 SWVNKCLSFAGRIQLISSVIFGSINFWMSTFLLPKGCIKRIESLCSRFLWSGNIEQAKGI 851
Query: 534 KVAWSIICLSKEQGGLGLRVARRWNDALLAETLWNIHFKKDTLWCKWVHHFYIKTGTIWT 713
KV+W+ +CL K +GGLGLR WN L +W + KD+LW W H ++ G+ W
Sbjct: 852 KVSWAALCLPKSEGGLGLRRLLEWNKTLSMRLIWRLFVAKDSLWADWQHLHHLSRGSFWA 911
Query: 714 VLVRKDIPPLFKQLLSIR 767
V + +K+LLS+R
Sbjct: 912 VEGGQSDSWTWKRLLSLR 929
Score = 70.1 bits (170), Expect(3) = 5e-38
Identities = 34/85 (40%), Positives = 54/85 (63%)
Frame = +1
Query: 112 GVIFSQSRLCDVLQELGEASGL*ANSLKSNIFLAGVEEHERSKILDYMGFTIGSMPSRYL 291
G FS +C+ L + SGL N KS+++LAG+ + E + Y GF IG++P RYL
Sbjct: 707 GGSFSLHGICETLDDFASWSGLKVNKDKSHLYLAGLNQLESNANAAY-GFPIGTLPIRYL 765
Query: 292 GIPLSGKYLKVADYSPLLDKVAGQY 366
G+PL + L++A+Y PLL+K+ ++
Sbjct: 766 GLPLMNRKLRIAEYEPLLEKITARF 790
Score = 35.4 bits (80), Expect(3) = 5e-38
Identities = 15/31 (48%), Positives = 21/31 (67%)
Frame = +3
Query: 39 NFHAKREKLNVSHLAFADDLMIFARGDFLSV 131
++H K L++SHL FADD+MIF G S+
Sbjct: 682 HYHPKASNLSISHLMFADDVMIFFDGGSFSL 712
>ref|XP_006582615.1| PREDICTED: uncharacterized protein LOC102665746 [Glycine max]
Length = 506
Score = 140 bits (354), Expect(2) = 9e-36
Identities = 102/352 (28%), Positives = 166/352 (47%), Gaps = 11/352 (3%)
Frame = +3
Query: 18 MLQGNGFNFHAKREKLNVSHLAFADDLMIFARGDFLSVKIV*CITRAW*SLG-TIG*LSQ 194
M + FN+H K +KL +++L FADDL++F+RGD +SV ++ RA+ S G L
Sbjct: 52 MQKDGDFNYHPKCDKLKITNLCFADDLLLFSRGDKISVGMM---MRAYESFSKATGLLVN 108
Query: 195 IQHIS--CRGGGT*EKQNI-GLYGVHYRQHAF*ISWHSFIR*IP*GCRL*PSFGQGGRTI 365
Q S C G K+ I + G Q F P + I
Sbjct: 109 PQKCSLLCAGIDAVTKREILEVSGFQEGQLPFKYLGVPVTSKKLSTIHYSPLIDKIVGKI 168
Query: 366 LAWSGFNLSYAGRVEVICSIVQGIESFLLGVLPISAAVLDRLTSLCRRFLW-----GNRY 530
W+ LSYAGR++++ S++ + ++ L P +VL ++ ++CR FLW G+R
Sbjct: 169 KHWTARLLSYAGRLQLVNSVMFALTNYWLNCFPFPKSVLQKIEAICRIFLWTGGFEGSRK 228
Query: 531 AKVAWSIICLSKEQGGLGLRVARRWNDALLAETLWNIHFKKDTLWCKWVHHFYIKTGTIW 710
+ VAW IC + GGL + WN A L + LWN+ K+D+LW KW+ +Y+K +
Sbjct: 229 SPVAWKQICSPRSCGGLNIIDIDIWNKANLMKLLWNLSSKEDSLWVKWIQAYYVKRSELM 288
Query: 711 TVLVRKDIPPLFKQLLSIRDKLVETLGSTNAAIERISSWIVGDNINASMAYEFFKPQGQL 890
+ ++ + K +L R+ L + I+ + ++ +IN Y + GQ
Sbjct: 289 HIEMKNTDSWIMKAILKQREDLEK--------IDNMEELMIRGSINMGKLYRKLQDCGQR 340
Query: 891 LTWSKIVWNPIIPSKFSFYLWLVVLERVLTMDRLHFLG--TDRMCKLCEQTE 1040
W +++ + +F LWL R+ T DRL G D+ C C + E
Sbjct: 341 KEWKNLLYGNTARPRANFILWLACHGRLSTKDRLCKYGMIDDKSCCFCSEEE 392
Score = 37.7 bits (86), Expect(2) = 9e-36
Identities = 16/63 (25%), Positives = 29/63 (46%)
Frame = +2
Query: 1040 EDLSHLFFACPFAVKVWNDIRNWAGLRRSMTISSSSFKWLIKESCGTSWKRNWRKLCPAA 1219
E ++HLFF C + +VW ++ W +R + + WL + G + K+ A
Sbjct: 392 ESMNHLFFVCDNSKRVWMEVLQWVQIRHDPSDWPNELHWLTHHTKGKGTRAAVLKMAIAE 451
Query: 1220 IVY 1228
+Y
Sbjct: 452 TIY 454
>ref|XP_006590026.1| PREDICTED: uncharacterized protein LOC102660482 [Glycine max]
Length = 303
Score = 154 bits (390), Expect = 6e-35
Identities = 94/303 (31%), Positives = 143/303 (47%), Gaps = 23/303 (7%)
Frame = +3
Query: 36 FNFHAKREKLNVSHLAFADDLMIFARGDFLSVKIV*CITRAW*SLGTIG*LSQIQHISCR 215
F FH + +SHLAF DD+M+ +RGD S+ + +++QH
Sbjct: 10 FKFHPNCAGIQLSHLAFVDDIMLLSRGDIPSMSTM---------------FAKLQHFCRV 54
Query: 216 GGGT*EKQNIGLYGVHYRQHAF*ISWHSFIR*IP*G------------------CRL*PS 341
G + +Y R H +S + G C P
Sbjct: 55 LGLSISSDKSSIYSSSIRTHE--LSHIQQLTGFSLGGFPFRYLGVPLLSSRLNVCHYAPL 112
Query: 342 FGQGGRTILAWSGFNLSYAGRVEVICSIVQGIESFLLGVLPISAAVLDRLTSLCRRFLW- 518
+ I WS +LSYAG++E+I +++QGI +F +G+ P+ +VLDR+ + CR FLW
Sbjct: 113 LSKITGLIQGWSRKSLSYAGKLELIRAVIQGIVNFWIGIFPLPQSVLDRINASCRNFLWG 172
Query: 519 ----GNRYAKVAWSIICLSKEQGGLGLRVARRWNDALLAETLWNIHFKKDTLWCKWVHHF 686
G + VAWS++C K +GGLGL + WN ALL+ LW+ H KKD+L WVHH+
Sbjct: 173 KADIGKKKPLVAWSVVCSPKREGGLGLFNLKDWNLALLSCILWDFHCKKDSL---WVHHY 229
Query: 687 YIKTGTIWTVLVRKDIPPLFKQLLSIRDKLVETLGSTNAAIERISSWIVGDNINASMAYE 866
Y + +W L K+++ IRD ++ ST A +RI SW + YE
Sbjct: 230 YFRRSDVWNYNTSSSYSVLIKKIIQIRDFIISKELSTEEAKKRIQSWRTNGQLLVGKVYE 289
Query: 867 FFK 875
+ +
Sbjct: 290 YIR 292
>ref|XP_004293181.1| PREDICTED: uncharacterized protein LOC101298394 [Fragaria vesca
subsp. vesca]
Length = 958
Score = 90.9 bits (224), Expect(3) = 2e-33
Identities = 63/245 (25%), Positives = 104/245 (42%), Gaps = 42/245 (17%)
Frame = +3
Query: 363 ILAWSGFNLSYAGRVEVICSIVQGIESFLLGVLPISAAVLDRLTSLCRRFLW-----GNR 527
I +W LS+AGR+++I S++ I+ + L + VL + R FLW G
Sbjct: 619 IKSWENKVLSFAGRLQLIQSVLSSIQVYWASHLILPKKVLKDIEKRLRCFLWAGNCSGRA 678
Query: 528 YAKVAWSIICLSKEQGGLGLRVARRWNDALLAETLWNIHFKKDTLWCKWVHHFYIKTGTI 707
KVAWS ICL K +GGLG++ WN AL+ +WN+ W WV + +K +
Sbjct: 679 ATKVAWSEICLPKCEGGLGIKDLHCWNKALMISHIWNLVSSSSNFWTDWVKVYLLKGNSF 738
Query: 708 WTVLVRKDIPPLFKQLLSIRDK----LVETLGSTNAAIERISSW-------------IVG 836
W + +++LL IR+ V +G A +W I+G
Sbjct: 739 WNAPLPSICSWNWRKLLKIRELCCSFFVNIIGDGRATSLWFDNWHPLGPLTLRWSSNIIG 798
Query: 837 DN-------------INASMAYEFFKPQGQLLTWSKIVW-------NPIIPSKFSFYLWL 956
++ + S A+ +P ++ W ++VW + +SF +W
Sbjct: 799 ESGLSKSAMLTPNGFYSTSSAWNTLRPSRFIVPWYRLVWFVAETHNHLFFDCAYSFGIWT 858
Query: 957 VVLER 971
VL +
Sbjct: 859 HVLSK 863
Score = 59.7 bits (143), Expect(3) = 2e-33
Identities = 31/73 (42%), Positives = 42/73 (57%)
Frame = +1
Query: 136 LCDVLQELGEASGL*ANSLKSNIFLAGVEEHERSKILDYMGFTIGSMPSRYLGIPLSGKY 315
L D S L AN +S IFLAGV+ + +L F++G+ P RYLGIPL
Sbjct: 543 LHDAFSNFESLSSLKANVSESKIFLAGVDGNSSDSVLQVTNFSLGTCPVRYLGIPLITSK 602
Query: 316 LKVADYSPLLDKV 354
L++ D SPLLD++
Sbjct: 603 LRMQDCSPLLDRI 615
Score = 40.8 bits (94), Expect(3) = 2e-33
Identities = 17/33 (51%), Positives = 25/33 (75%)
Frame = +3
Query: 36 FNFHAKREKLNVSHLAFADDLMIFARGDFLSVK 134
F +H + ++LN+SHL FADDL++F GD SV+
Sbjct: 509 FRYHWRCDQLNLSHLCFADDLLMFCNGDENSVR 541
>gb|AAD15471.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1277
Score = 88.2 bits (217), Expect(3) = 5e-32
Identities = 41/142 (28%), Positives = 77/142 (54%), Gaps = 6/142 (4%)
Frame = +3
Query: 363 ILAWSGFNLSYAGRVEVICSIVQGIESFLLGVLPISAAVLDRLTSLCRRFLWGN-----R 527
I +W+ +LSYAGR+ +I S++ + +F + + A + + LC FLW +
Sbjct: 939 ISSWTARSLSYAGRLALINSVIVSLSNFWMSAYRLPAGCIKEIEKLCSAFLWSGPELNPK 998
Query: 528 YAKVAWSIICLSKEQGGLGLRVARRWNDALLAETLWNIHFKKDTLWCKWVHHFYIKTGTI 707
AK+ W+ +C K++GGLG++ N + +W + ++ +LW WV + I+ G+
Sbjct: 999 KAKITWTSLCKLKQEGGLGIKSLLEANKVSCLKLIWRLVSRQSSLWVNWVWTYIIRKGSF 1058
Query: 708 WTVLVRKDIPP-LFKQLLSIRD 770
W+ R + ++K+LL+ RD
Sbjct: 1059 WSANDRSSLGSWMWKKLLNYRD 1080
Score = 61.2 bits (147), Expect(3) = 5e-32
Identities = 32/71 (45%), Positives = 42/71 (59%)
Frame = +1
Query: 142 DVLQELGEASGL*ANSLKSNIFLAGVEEHERSKILDYMGFTIGSMPSRYLGIPLSGKYLK 321
++ ++ SGL + KS ++LA V E R+ IL F G +P RYLG PL K +
Sbjct: 865 NIFKDFAGKSGLHISLEKSTLYLAEVSELNRNNILSAFPFASGQLPVRYLGFPLLTKQMT 924
Query: 322 VADYSPLLDKV 354
ADYSPLLDKV
Sbjct: 925 TADYSPLLDKV 935
Score = 37.0 bits (84), Expect(3) = 5e-32
Identities = 16/31 (51%), Positives = 23/31 (74%)
Frame = +3
Query: 42 FHAKREKLNVSHLAFADDLMIFARGDFLSVK 134
+H K +KL+++HL FADDLM+F G SV+
Sbjct: 831 YHPKCKKLSLTHLCFADDLMVFIDGQQRSVE 861
>gb|AAC95175.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1352
Score = 96.7 bits (239), Expect(3) = 2e-31
Identities = 50/143 (34%), Positives = 81/143 (56%), Gaps = 6/143 (4%)
Frame = +3
Query: 363 ILAWSGFNLSYAGRVEVICSIVQGIESFLLGVLPISAAVLDRLTSLCRRFLWGN-----R 527
I +W+ LS+AGR+++I S++ I +F L V + A L + + FLW +
Sbjct: 944 ITSWTNRFLSFAGRLQLIKSVLSSITNFWLSVFRLPKACLQEIEKMFSAFLWSGPDLNTK 1003
Query: 528 YAKVAWSIICLSKEQGGLGLRVARRWNDALLAETLWNIHFKKDTLWCKWVHHFYIKTGTI 707
AK+AWS +C KE+GGLGL+ + N+ L + +W I +D+LW KWV+ I+ T
Sbjct: 1004 KAKIAWSEVCKLKEEGGLGLKPLKEANEVSLLKLIWRILSARDSLWVKWVNKHLIRKETF 1063
Query: 708 WTVLVRKDIPP-LFKQLLSIRDK 773
W+V + L++++L RDK
Sbjct: 1064 WSVKENTGLGSWLWRKILKQRDK 1086
Score = 53.5 bits (127), Expect(3) = 2e-31
Identities = 24/70 (34%), Positives = 43/70 (61%)
Frame = +1
Query: 145 VLQELGEASGL*ANSLKSNIFLAGVEEHERSKILDYMGFTIGSMPSRYLGIPLSGKYLKV 324
+ ++ S L + KS IF+AG+ + ++ IL F +G++P +YLG+PL K +
Sbjct: 871 IFEKFAAMSWLKISLEKSTIFMAGISPNAKTSILQQFPFELGTLPVKYLGLPLLTKRMTQ 930
Query: 325 ADYSPLLDKV 354
+DY PL++K+
Sbjct: 931 SDYLPLVEKI 940
Score = 34.7 bits (78), Expect(3) = 2e-31
Identities = 12/32 (37%), Positives = 23/32 (71%)
Frame = +3
Query: 39 NFHAKREKLNVSHLAFADDLMIFARGDFLSVK 134
++H + +N++HL FADD+M+F+ G S++
Sbjct: 835 SYHPRCRNMNLTHLCFADDIMVFSDGTSKSIQ 866
>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
thaliana]
Length = 1223
Score = 91.3 bits (225), Expect(3) = 2e-31
Identities = 55/191 (28%), Positives = 89/191 (46%), Gaps = 5/191 (2%)
Frame = +3
Query: 336 PSFGQGGRTILAWSGFNLSYAGRVEVICSIVQGIESFLLGVLPISAAVLDRLTSLCRRFL 515
P Q + I +W+ LSYAGR+ +I S++ I +F L + + L +C FL
Sbjct: 788 PLLEQVRKRIGSWTSRFLSYAGRLNLISSVLWSICNFWLAAFRLPRKCIRELEKMCSAFL 847
Query: 516 WG-----NRYAKVAWSIICLSKEQGGLGLRVARRWNDALLAETLWNIHFKKDTLWCKWVH 680
W + AK++W ++C K++GGLGLR + ND + +W I ++LW KWV
Sbjct: 848 WSGTEMNSNKAKISWHMVCKPKDEGGLGLRSLKEANDVCCLKLVWKIVSHSNSLWVKWVD 907
Query: 681 HFYIKTGTIWTVLVRKDIPPLFKQLLSIRDKLVETLGSTNAAIERISSWIVGDNINASMA 860
++ + W V KQ +S + + L + +S VG+ S
Sbjct: 908 QHLLRNASFWEV----------KQTVSQGSWIWKKLLKYREVAKTLSKVEVGNGKQTSFW 957
Query: 861 YEFFKPQGQLL 893
Y+ + GQLL
Sbjct: 958 YDNWSDLGQLL 968
Score = 58.5 bits (140), Expect(3) = 2e-31
Identities = 32/81 (39%), Positives = 46/81 (56%)
Frame = +1
Query: 112 GVIFSQSRLCDVLQELGEASGL*ANSLKSNIFLAGVEEHERSKILDYMGFTIGSMPSRYL 291
G I S R+ V E + SGL + KS ++LAG+ R+++ D F+ G +P RYL
Sbjct: 713 GKIRSIERIIKVFDEFAKWSGLRISLEKSTVYLAGLSATARNEVADRFPFSSGQLPVRYL 772
Query: 292 GIPLSGKYLKVADYSPLLDKV 354
G+PL K L D PLL++V
Sbjct: 773 GLPLITKRLSTTDCLPLLEQV 793
Score = 35.0 bits (79), Expect(3) = 2e-31
Identities = 13/33 (39%), Positives = 23/33 (69%)
Frame = +3
Query: 36 FNFHAKREKLNVSHLAFADDLMIFARGDFLSVK 134
F +H K + + ++HL+FADDLM+ + G S++
Sbjct: 687 FGYHPKCKTMGLTHLSFADDLMVLSDGKIRSIE 719
>gb|AAF87143.1|AC002423_8 T23E23.16 [Arabidopsis thaliana]
Length = 653
Score = 90.5 bits (223), Expect(3) = 3e-31
Identities = 55/217 (25%), Positives = 96/217 (44%), Gaps = 5/217 (2%)
Frame = +3
Query: 357 RTILAWSGFNLSYAGRVEVICSIVQGIESFLLGVLPISAAVLDRLTSLCRRFLWGN---- 524
+ I W+ LSYAGR+ +I S++ I +F L + + + +C FLW
Sbjct: 322 KKIGTWTTRYLSYAGRLNLITSVLWSICNFWLAAFRLPRECIREIDKICSAFLWSGPDLN 381
Query: 525 -RYAKVAWSIICLSKEQGGLGLRVARRWNDALLAETLWNIHFKKDTLWCKWVHHFYIKTG 701
R +V W +C K++GGLGLR + N+ + +W I ++LW +W+ + +K
Sbjct: 382 PRKTRVCWGDVCKPKQEGGLGLRSLKEMNEVSCLKLIWRIVSHTNSLWVRWIEQYLLKHD 441
Query: 702 TIWTVLVRKDIPPLFKQLLSIRDKLVETLGSTNAAIERISSWIVGDNINASMAYEFFKPQ 881
T W+V ++ + + G + + + S+ D N + +
Sbjct: 442 TFWSVQTTTNMDSVLWR------------GRNDEYMPKFST---RDTWNQT------RNT 480
Query: 882 GQLLTWSKIVWNPIIPSKFSFYLWLVVLERVLTMDRL 992
+TW +W KFSF WL V R+ T D++
Sbjct: 481 STPVTWHMGIWFAHATPKFSFCAWLAVQNRLSTGDKM 517
Score = 57.4 bits (137), Expect(3) = 3e-31
Identities = 32/81 (39%), Positives = 45/81 (55%)
Frame = +1
Query: 112 GVIFSQSRLCDVLQELGEASGL*ANSLKSNIFLAGVEEHERSKILDYMGFTIGSMPSRYL 291
G + S + +V + SGL + KS I+LAGV E +I + F +G +P RYL
Sbjct: 240 GKVRSIDGIVEVFDIFAKFSGLKISMEKSTIYLAGVTEDVYHEIQNRYQFDVGQLPVRYL 299
Query: 292 GIPLSGKYLKVADYSPLLDKV 354
G+PL K L DYSPLL+ +
Sbjct: 300 GLPLVTKRLTATDYSPLLEHI 320
Score = 35.8 bits (81), Expect(3) = 3e-31
Identities = 13/32 (40%), Positives = 25/32 (78%)
Frame = +3
Query: 36 FNFHAKREKLNVSHLAFADDLMIFARGDFLSV 131
F +H++ ++L+++HL+FADDLM+ + G S+
Sbjct: 214 FGYHSRCKELSLTHLSFADDLMVLSDGKVRSI 245
>gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]
Length = 872
Score = 89.4 bits (220), Expect(3) = 6e-31
Identities = 54/192 (28%), Positives = 92/192 (47%), Gaps = 6/192 (3%)
Frame = +3
Query: 336 PSFGQGGRTILAWSGFNLSYAGRVEVICSIVQGIESFLLGVLPISAAVLDRLTSLCRRFL 515
P Q + I W+ S+AGR +I S++ I +F L + + + LC FL
Sbjct: 435 PLLEQIKKRIATWTFRFFSFAGRFNLIKSVLWSICNFWLAAFRLPRQCIREIDKLCSSFL 494
Query: 516 WG-----NRYAKVAWSIICLSKEQGGLGLRVARRWNDALLAETLWNIHFKKDTLWCKWVH 680
W + AK++W I+C K +GGLGLR + ND + +W I ++LW KWV
Sbjct: 495 WSGSEMSSHKAKISWDIVCKPKAEGGLGLRNLKEANDVSCLKLVWRIISNSNSLWTKWVA 554
Query: 681 HFYIKTGTIWTVLVRKDIPP-LFKQLLSIRDKLVETLGSTNAAIERISSWIVGDNINASM 857
+ I+ +IW++ + +++++L IRD + S VG+ +AS
Sbjct: 555 EYLIRKKSIWSLKQSTSMGSWIWRKILKIRD-----------VAKSFSRVEVGNGESASF 603
Query: 858 AYEFFKPQGQLL 893
Y+ + G+L+
Sbjct: 604 WYDHWSAHGRLI 615
Score = 55.8 bits (133), Expect(3) = 6e-31
Identities = 29/73 (39%), Positives = 44/73 (60%)
Frame = +1
Query: 136 LCDVLQELGEASGL*ANSLKSNIFLAGVEEHERSKILDYMGFTIGSMPSRYLGIPLSGKY 315
+ +V E + SGL + KS +++AGV + +I F +G +P RYLG+PL K
Sbjct: 368 ILEVFDEFCKRSGLRISLEKSTLYMAGVSPIIKQEIAAKFLFDVGQLPVRYLGLPLVTKR 427
Query: 316 LKVADYSPLLDKV 354
L ADYSPLL+++
Sbjct: 428 LTSADYSPLLEQI 440
Score = 37.7 bits (86), Expect(3) = 6e-31
Identities = 15/33 (45%), Positives = 24/33 (72%)
Frame = +3
Query: 36 FNFHAKREKLNVSHLAFADDLMIFARGDFLSVK 134
F FH K ++L ++HL+FADDLM+ + G S++
Sbjct: 334 FGFHPKCQRLGLTHLSFADDLMVLSDGKTRSIE 366
>ref|XP_006579104.1| PREDICTED: uncharacterized protein LOC102661523 [Glycine max]
Length = 947
Score = 130 bits (326), Expect(2) = 1e-30
Identities = 101/366 (27%), Positives = 165/366 (45%), Gaps = 29/366 (7%)
Frame = +3
Query: 36 FNFHAKREKLNVSHLAFADDLMIFARGDFLSVKIV*CITRAW*SLGTIG*LSQIQHISCR 215
FN HAK EKL ++HL FADD+++F RGD +SV+++ + + T G + + CR
Sbjct: 500 FNHHAKCEKLGITHLTFADDVLLFCRGDVMSVEMMLHVINKF--SATTGLV--VNPNKCR 555
Query: 216 ------GGGT*EK-QNIGLY----------GVHYRQHAF*ISWHSFIR*IP*GCRL*PSF 344
G T K Q I Y GV I ++ P
Sbjct: 556 IYFGGVDGTTKNKIQQISSYEEGQLPVRYLGVPLTSKKLNIKYYL------------PLI 603
Query: 345 GQGGRTILAWSGFNLSYAGRVEVICSIVQGIESFLLGVLPISAAVLDRLTSLCRRFLWGN 524
+ I W+ L+ GRV+++ + I F + LPI +V+ ++ S+CR F+W
Sbjct: 604 DKITTRIRHWTSKLLNMTGRVQMVNCTITAIVQFWMQCLPIPMSVIKKIDSMCRSFVWSR 663
Query: 525 -----RYAKVAWSIICLSKEQGGLGLRVARRWNDALLAETLWNIHFKKDTLWCKWVHHFY 689
R + +AW+ +C K QGGL + + WN + LWN+ K D LW KW+H Y
Sbjct: 664 STEITRKSPIAWNSVCRPKGQGGLNIFNLKVWNHITVLNCLWNLCKKVDNLWVKWIHAHY 723
Query: 690 IKTGTIWTVLVRKDIPPLFKQLLSIRDKLVETLGSTNAAIERISSWIVGDNINASMAYEF 869
IK ++ +V + + K +LS R+ + TL V D + S ++
Sbjct: 724 IKNSSVMNTMVTNNFSWVLKNVLSQRE-YIHTLQP------------VWDELLNSERFKM 770
Query: 870 FKPQGQLLTWSKIVWNPIIPSKFS-----FYLWLVVLERVLTMDRLHFLG--TDRMCKLC 1028
K +++ ++ W+ ++ + WL R+ T DRL G TD++ LC
Sbjct: 771 KKAYDKMMEADRVHWSGLMRKNCARPRAIHTTWLACHGRLGTKDRLVRFGMITDKIWSLC 830
Query: 1029 EQTEKT 1046
++ E+T
Sbjct: 831 KEVEET 836
Score = 31.2 bits (69), Expect(2) = 1e-30
Identities = 14/63 (22%), Positives = 26/63 (41%)
Frame = +2
Query: 1040 EDLSHLFFACPFAVKVWNDIRNWAGLRRSMTISSSSFKWLIKESCGTSWKRNWRKLCPAA 1219
E +H+ F+C A +W+++ N G+ WL+ + W+ KL
Sbjct: 835 ETQNHILFSCKVATDIWSNVLNRIGIDHVPQEWPLELDWLLNLTNRKGWRAYLLKLSVTE 894
Query: 1220 IVY 1228
+Y
Sbjct: 895 TIY 897
>ref|XP_006586426.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Glycine
max]
Length = 192
Score = 100 bits (248), Expect(2) = 5e-30
Identities = 46/106 (43%), Positives = 69/106 (65%), Gaps = 5/106 (4%)
Frame = +3
Query: 363 ILAWSGFNLSYAGRVEVICSIVQGIESFLLGVLPISAAVLDRLTSLCRRFLWGN-----R 527
I WS +LSYAG++E+I +++QGI +F + + + +V+D + + CR FLWG
Sbjct: 77 IQGWSKKSLSYAGKLELIRAVIQGIVNFWMEIFSLPQSVMDWINASCRNFLWGKADIGKN 136
Query: 528 YAKVAWSIICLSKEQGGLGLRVARRWNDALLAETLWNIHFKKDTLW 665
VAWS++C K++GGLGL + WN ALL+ LW+ H KKD+LW
Sbjct: 137 KPLVAWSVVCSPKKEGGLGLLNLKDWNLALLSRILWDFHCKKDSLW 182
Score = 59.3 bits (142), Expect(2) = 5e-30
Identities = 31/71 (43%), Positives = 39/71 (54%)
Frame = +1
Query: 148 LQELGEASGL*ANSLKSNIFLAGVEEHERSKILDYMGFTIGSMPSRYLGIPLSGKYLKVA 327
LQ SGL +S KS I+ G+ HE S I GF++G P RYLG+PL L V
Sbjct: 5 LQHFCRVSGLSISSDKSAIYSTGIRPHELSHIQQLTGFSLGDFPFRYLGVPLLSSRLNVC 64
Query: 328 DYSPLLDKVAG 360
Y+ LL K+ G
Sbjct: 65 HYALLLSKITG 75
>ref|XP_006584390.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Glycine
max]
Length = 316
Score = 137 bits (346), Expect = 7e-30
Identities = 85/270 (31%), Positives = 132/270 (48%), Gaps = 6/270 (2%)
Frame = +3
Query: 36 FNFHAKREKLNVSHLAFADDLMIFARGDFLSVKIV*CITRAW*SLGTIG*LSQIQHISCR 215
F FH + +SHLAFADD+M+ +RGD + + + + + + S I
Sbjct: 43 FKFHPNCAGIQLSHLAFADDIMLLSRGDIPYMSTMFAKLQHFCRVSGLSISSDKSAIYSA 102
Query: 216 GGGT*EKQNIG-LYGVHYRQHAF*ISWHSFIR*IP*GCRL*PSFGQGGRTILAWSGFNLS 392
G E +I L G F + C P + I W+ +LS
Sbjct: 103 GIRPYELSHIQQLTGFSLGGFPFRYLGAPLLSSRLNVCHYAPLLYKIVGLIQGWNKKSLS 162
Query: 393 YAGRVEVICSIVQGIESFLLGVLPISAAVLDRLTSLCRRFLW-----GNRYAKVAWSIIC 557
Y G++E+I +++QGI +F + + P+ +VLDR+ + C FLW G VAW ++C
Sbjct: 163 YVGKLELIKAVIQGIMNFWMRIFPLPQSVLDRINASCCNFLWSKADIGKNKPLVAWPVVC 222
Query: 558 LSKEQGGLGLRVARRWNDALLAETLWNIHFKKDTLWCKWVHHFYIKTGTIWTVLVRKDIP 737
K++GGLGL + WN ALL+ LW+ H KKD+L +WVHH+Y + W +
Sbjct: 223 SPKQEGGLGLFNLKDWNLALLSHILWDFHCKKDSLRVRWVHHYYFRRSDEWNYNISSSNS 282
Query: 738 PLFKQLLSIRDKLVETLGSTNAAIERISSW 827
L K+++ IRD ++ S +RI SW
Sbjct: 283 VLIKKIIQIRDFIISKELSMEETKKRIQSW 312
>emb|CAB45965.1| putative reverse transcriptase [Arabidopsis thaliana]
gi|7267919|emb|CAB78261.1| putative reverse
transcriptase [Arabidopsis thaliana]
Length = 662
Score = 92.8 bits (229), Expect(3) = 2e-29
Identities = 54/191 (28%), Positives = 90/191 (47%), Gaps = 5/191 (2%)
Frame = +3
Query: 336 PSFGQGGRTILAWSGFNLSYAGRVEVICSIVQGIESFLLGVLPISAAVLDRLTSLCRRFL 515
P Q R I W+ LSYAGR+ ++ S++ I +F L + + + LC FL
Sbjct: 306 PLLEQIKRRIGTWTARFLSYAGRLNLVSSVLWSICNFWLSAFRLPRECVREIDKLCSAFL 365
Query: 516 WGN-----RYAKVAWSIICLSKEQGGLGLRVARRWNDALLAETLWNIHFKKDTLWCKWVH 680
W AK+AW +C K +GGLGL+ + ND + +W I + D+LW +W+
Sbjct: 366 WSGPELSTNKAKIAWETVCRPKREGGLGLQSIKEANDVCCLKLIWRIVSQGDSLWVQWIR 425
Query: 681 HFYIKTGTIWTVLVRKDIPPLFKQLLSIRDKLVETLGSTNAAIERISSWIVGDNINASMA 860
+ +K T W+ ++K+LL RD T A ++ + + AS
Sbjct: 426 TYLLKRNTFWSFRSASQGSWMWKKLLKYRD--------TAKAFSKVD---IRNGETASFW 474
Query: 861 YEFFKPQGQLL 893
Y+ + +G+L+
Sbjct: 475 YDDWSSKGRLI 485
Score = 50.8 bits (120), Expect(3) = 2e-29
Identities = 26/81 (32%), Positives = 42/81 (51%)
Frame = +1
Query: 112 GVIFSQSRLCDVLQELGEASGL*ANSLKSNIFLAGVEEHERSKILDYMGFTIGSMPSRYL 291
G + S + +V + SGL + K+ I+ AG+ + + D F +G +P RYL
Sbjct: 231 GKLRSLEGIVEVFDSFAKQSGLKISMAKTTIYFAGISKSVCKEFEDQFHFAVGRLPVRYL 290
Query: 292 GIPLSGKYLKVADYSPLLDKV 354
+PL K DYSPLL+++
Sbjct: 291 CLPLVTKRFTSQDYSPLLEQI 311
Score = 34.3 bits (77), Expect(3) = 2e-29
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +3
Query: 36 FNFHAKREKLNVSHLAFADDLMIFARGDFLSVK 134
F +H K + L ++HL+FADD+M+ G S++
Sbjct: 205 FGYHPKCKNLGLTHLSFADDIMVLTDGKLRSLE 237
>ref|XP_006584200.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Glycine
max]
Length = 239
Score = 134 bits (337), Expect = 8e-29
Identities = 79/245 (32%), Positives = 119/245 (48%), Gaps = 21/245 (8%)
Frame = +3
Query: 36 FNFHAKREKLNVSHLAFADDLMIFARGDFLSVKIV*CITRAW*SLGTIG*LSQIQHISCR 215
F FH + + HLAFADD+M +RGD SV + +++QH
Sbjct: 10 FKFHPNCAGIQLFHLAFADDIMFLSRGDIPSVSTM---------------FAKLQHFCRV 54
Query: 216 GGGT*EKQNIGLYGVHYRQH---------AF*ISWHSF-IR*IP*------GCRL*PSFG 347
G + +Y R H F + F +P C P
Sbjct: 55 SGLSINSDKSAIYSAGIRPHELSHIQQLTGFNLGGFPFRYLGVPLLSSRLNVCHYAPLLS 114
Query: 348 QGGRTILAWSGFNLSYAGRVEVICSIVQGIESFLLGVLPISAAVLDRLTSLCRRFLWGN- 524
+ I WS +LSYAG++E+I +++QGI +F + + P+S +VLDR+ + C FLWG
Sbjct: 115 KITGLIQGWSRKSLSYAGKLELIRAVIQGIVNFWMKIFPLSQSVLDRINASCCNFLWGKA 174
Query: 525 ----RYAKVAWSIICLSKEQGGLGLRVARRWNDALLAETLWNIHFKKDTLWCKWVHHFYI 692
+ +AWS++C K++GGLGL + WN LL+ LW+ H KKD LW +WVHH+Y
Sbjct: 175 DIGKNKSLIAWSVVCSPKKEGGLGLFNLKDWNLTLLSRILWDFHCKKDFLWVRWVHHYYF 234
Query: 693 KTGTI 707
+ +
Sbjct: 235 RASDV 239
>emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1114
Score = 128 bits (322), Expect(2) = 2e-28
Identities = 97/349 (27%), Positives = 158/349 (45%), Gaps = 18/349 (5%)
Frame = +3
Query: 36 FNFHAKREKLNVSHLAFADDLMIFARGDFLSVKIV*CITRAW*SLGTIG*LSQIQHISCR 215
FNFH K E++ ++HL FADDL++FAR D S+ I A+ S L SC
Sbjct: 675 FNFHPKCERIKLTHLMFADDLLMFARADASSISK---IMAAFNSFSKASGLQASIEKSCI 731
Query: 216 --GGGT*EKQN---------IGLYGVHYRQHAF*ISWHSFIR*IP*GCRL*PSFGQGGRT 362
GG E+ IG Y +F + C+ P +
Sbjct: 732 YFGGVCHEEAEQLADRIQMPIGSLPFRYLGVPLASKKLNFSQ-----CK--PLIDKITTR 784
Query: 363 ILAWSGFNLSYAGRVEVICSIVQGIESFLLGVLPISAAVLDRLTSLCRRFLWGNRY---- 530
W LSYAGR++++ +I+ ++++ + P+ ++ + + CR+FLW
Sbjct: 785 AQGWVAHLLSYAGRLQLVKTILYSMQNYWGQIFPLPKKLIKAVETTCRKFLWTGTVDTSY 844
Query: 531 -AKVAWSIICLSKEQGGLGLRVARRWNDALLAETLWNIHFKKDTLWCKWVHHFYIKTGTI 707
A VAW + K GGL + WN A + + LW I FK+D LW +WV+ +YIK I
Sbjct: 845 KAPVAWDFLQQPKSTGGLNVTNMVLWNKAAILKLLWAITFKQDKLWVRWVNAYYIKRQNI 904
Query: 708 WTVLVRKDIPPLFKQLLSIRDKLVETLGSTNAAIERISSWIVGDNINASMAYEFFKPQGQ 887
V V + + +++ R+ L T G E +S+ + N + Y+ + +
Sbjct: 905 ENVTVSSNTSWILRKIFESRELLTRTGG-----WEAVSNHM---NFSIKKTYKLLQEDYE 956
Query: 888 LLTWSKIVWNPIIPSKFSFYLWLVVLERVLTMDRLHFLGTD--RMCKLC 1028
+ W +++ N K F LWL +L R+ T +R+ D +CK+C
Sbjct: 957 NVVWKRLICNNKATPKSQFILWLAMLNRLATAERVSRWNRDVSPLCKMC 1005
Score = 25.4 bits (54), Expect(2) = 2e-28
Identities = 8/27 (29%), Positives = 16/27 (59%)
Frame = +2
Query: 1040 EDLSHLFFACPFAVKVWNDIRNWAGLR 1120
E + HLFF C ++ ++W + + L+
Sbjct: 1010 ETIQHLFFNCIYSKEIWGKVLLYLNLQ 1036
>dbj|BAB08270.1| non-LTR retroelement reverse transcriptase-like protein
[Arabidopsis thaliana]
Length = 489
Score = 93.2 bits (230), Expect(2) = 8e-27
Identities = 46/148 (31%), Positives = 78/148 (52%), Gaps = 6/148 (4%)
Frame = +3
Query: 357 RTILAWSGFNLSYAGRVEVICSIVQGIESFLLGVLPISAAVLDRLTSLCRRFLWGN---- 524
+ I +WS LSYAGR+ +I S++ I +F +G + + + +C +LW
Sbjct: 177 KKIGSWSARFLSYAGRLNLISSVLWSICNFWMGAFRLPRECIREIDKMCSAYLWSGGDLN 236
Query: 525 -RYAKVAWSIICLSKEQGGLGLRVARRWNDALLAETLWNIHFKKDTLWCKWVHHFYIKTG 701
AK+AW+ +C K++GGLGLR + ND + +W I D+LW KW+H +K
Sbjct: 237 TSKAKIAWTDVCKPKDEGGLGLRSLKEANDVSCLKLIWRIISHADSLWVKWIHATLLKQV 296
Query: 702 TIWTVLVRKDIPP-LFKQLLSIRDKLVE 782
+ W V + ++K++L RD ++
Sbjct: 297 SFWAVRENTSLGSWMWKKVLKFRDAAIQ 324
Score = 55.5 bits (132), Expect(2) = 8e-27
Identities = 25/81 (30%), Positives = 45/81 (55%)
Frame = +1
Query: 112 GVIFSQSRLCDVLQELGEASGL*ANSLKSNIFLAGVEEHERSKILDYMGFTIGSMPSRYL 291
G + S + +V + + SGL + KS ++ AG+ +++ + F +G++P RYL
Sbjct: 95 GKVRSIEGIVEVFETFAKCSGLRISMEKSTVYFAGLSHTSPQEVMAHFPFAVGTLPVRYL 154
Query: 292 GIPLSGKYLKVADYSPLLDKV 354
G+PL K L DY PL++ +
Sbjct: 155 GLPLVTKQLSSTDYLPLIEHI 175
>gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm, score: 60.13)
[Arabidopsis thaliana]
Length = 1164
Score = 84.3 bits (207), Expect(2) = 7e-26
Identities = 55/181 (30%), Positives = 86/181 (47%), Gaps = 6/181 (3%)
Frame = +3
Query: 369 AWSGFNLSYAGRVEVICSIVQGIESFLLGVLPISAAVLDRLTSLCRRFLWGNR-----YA 533
+W LS+AGRV+++ S++ GI +F + + + ++ SLC RFLW +R A
Sbjct: 689 SWVVRLLSFAGRVQLLASVISGIVNFWISSFILPLGCIKKIESLCSRFLWSSRIDKKGIA 748
Query: 534 KVAWSIICLSKEQGGLGLRVARRWNDALLAETLWNIHFKKDTLWCKW-VHHFYIKTGTIW 710
KVAWS +CL K +GG+GLR N L +W + +LW W H K+ + W
Sbjct: 749 KVAWSQVCLPKAEGGIGLRRFAVSNRTLYLRMIWLLFSNSGSLWVAWHKQHSLGKSTSFW 808
Query: 711 TVLVRKDIPPLFKQLLSIRDKLVETLGSTNAAIERISSWIVGDNINASMAYEFFKPQGQL 890
+ +K LL +R ER VG+ +AS ++ + P G L
Sbjct: 809 NQPEKPHDSWNWKCLLRLR-----------VVAERFIRCNVGNGRDASFWFDNWTPFGPL 857
Query: 891 L 893
+
Sbjct: 858 I 858
Score = 61.2 bits (147), Expect(2) = 7e-26
Identities = 27/77 (35%), Positives = 50/77 (64%)
Frame = +1
Query: 136 LCDVLQELGEASGL*ANSLKSNIFLAGVEEHERSKILDYMGFTIGSMPSRYLGIPLSGKY 315
+ + L++ SGL N+ K+ ++ AG+ + E + Y GF +GS+P RYLG+PL +
Sbjct: 612 IVESLEDFAGWSGLLMNTNKTQLYHAGLSQSESDSMASY-GFKLGSLPVRYLGLPLMSRK 670
Query: 316 LKVADYSPLLDKVAGQY 366
L +A+Y+PL++K+ ++
Sbjct: 671 LTIAEYAPLIEKITARF 687