BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Catharanthus22_contig00015241
         (1258 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002282614.1| PREDICTED: RNA pseudourine synthase 4, mitoc...   426   e-116
ref|XP_006346360.1| PREDICTED: RNA pseudouridine synthase 4, mit...   426   e-116
ref|XP_004230733.1| PREDICTED: RNA pseudourine synthase 4, mitoc...   419   e-114
gb|EMJ01009.1| hypothetical protein PRUPE_ppa004969mg [Prunus pe...   398   e-108
ref|XP_006486999.1| PREDICTED: RNA pseudouridine synthase 4, mit...   397   e-108
ref|XP_006422925.1| hypothetical protein CICLE_v10028283mg [Citr...   394   e-107
ref|XP_002313876.2| hypothetical protein POPTR_0009s09860g [Popu...   394   e-107
ref|XP_002518674.1| ribosomal pseudouridine synthase, putative [...   394   e-107
gb|EMJ01008.1| hypothetical protein PRUPE_ppa004969mg [Prunus pe...   392   e-106
gb|EOX98365.1| Ribosomal pseudouridine synthase, putative [Theob...   389   e-105
ref|XP_004305959.1| PREDICTED: RNA pseudourine synthase 4, mitoc...   382   e-103
gb|EXB63685.1| RNA pseudourine synthase 4 [Morus notabilis]           379   e-102
ref|XP_004511295.1| PREDICTED: RNA pseudourine synthase 4, mitoc...   374   e-101
ref|XP_004137095.1| PREDICTED: RNA pseudourine synthase 4, mitoc...   371   e-100
ref|XP_004170490.1| PREDICTED: RNA pseudourine synthase 4, mitoc...   371   e-100
ref|XP_002883182.1| pseudouridine synthase family protein [Arabi...   370   e-100
gb|ESW29223.1| hypothetical protein PHAVU_002G053600g [Phaseolus...   369   1e-99
ref|NP_188575.1| RNA pseudourine synthase 4 [Arabidopsis thalian...   368   2e-99
ref|XP_006573909.1| PREDICTED: RNA pseudouridine synthase 4, mit...   366   1e-98
ref|XP_003516775.1| PREDICTED: RNA pseudouridine synthase 4, mit...   366   1e-98

>ref|XP_002282614.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial [Vitis vinifera]
            gi|296090438|emb|CBI40257.3| unnamed protein product
            [Vitis vinifera]
          Length = 476

 Score =  426 bits (1095), Expect = e-116
 Identities = 205/322 (63%), Positives = 262/322 (81%)
 Frame = -1

Query: 1258 LPVTVEKKSPSVQGKAKVTYSEEEMKFLHSLILYKDPAVVVINKPPGMPVQGGIGVKRSL 1079
            LP+TVE+  PS   K +   ++EE+ F+H+L LYKDPA++V+NKPPG+PVQGGIG+KRSL
Sbjct: 158  LPITVEE-FPSE--KHEYHCNDEEINFVHNLELYKDPAIIVVNKPPGLPVQGGIGIKRSL 214

Query: 1078 DELAAAYLRCNDSEFPRLVHRLDRDCSGVLVMGRTQLSASVLHTIFREKTCEASKHDLEQ 899
            DELAA YLR + SE PRLVHRLDRD SG+L+MGRTQ SA++LH+IFREKT  AS +D++ 
Sbjct: 215  DELAATYLRYDCSEPPRLVHRLDRDSSGILIMGRTQTSATILHSIFREKTFGASNNDIDT 274

Query: 898  RREIIQKTYWALVIGSPRRSKGLISVPLQKVVMDNGKFERITVADNAQSSLAQSAITEYR 719
            ++ I+Q+ YWALVIGSPRR +GLIS PL KVV+D+GK ERIT+ DN Q+  +Q AITEYR
Sbjct: 275  KKRILQRRYWALVIGSPRRPRGLISAPLGKVVVDDGKSERITIVDNVQTMSSQHAITEYR 334

Query: 718  IIGSPCCGYTWLELSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQVHKNLEPFPCSGLSQ 539
            +I S C GYTWLELSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ H+  +    S + +
Sbjct: 335  VIKSSCHGYTWLELSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHRKWKQLFQSNIEK 394

Query: 538  DPQEELTNKKLDPFGLNLQSGNISDKQPYLHLHCKEMILPDISVAAQRAKSPTDFDIEDL 359
            +  E L+N+K  PFGL+L+SG+I DKQP+LHLHCK+M+LP++S+A Q  +   + D+ +L
Sbjct: 395  NLDENLSNRKTHPFGLDLESGSILDKQPHLHLHCKQMVLPNVSLALQNLQLSAECDLSEL 454

Query: 358  ESIKFDAPLPSHMQKSWDLLIS 293
            ES++F APLPSHMQ+SWD+L S
Sbjct: 455  ESLEFVAPLPSHMQRSWDILNS 476


>ref|XP_006346360.1| PREDICTED: RNA pseudouridine synthase 4, mitochondrial-like [Solanum
            tuberosum]
          Length = 467

 Score =  426 bits (1094), Expect = e-116
 Identities = 220/327 (67%), Positives = 257/327 (78%), Gaps = 5/327 (1%)
 Frame = -1

Query: 1258 LPVTVEKKSPSVQGKAKVTY---SEEEMKFLHSLILYKDPAVVVINKPPGMPVQGGIGVK 1088
            LP+TV+K  PS     KV Y   SEEE KF+HSL LYKDP +VV+NKPPGMPVQGGIG+K
Sbjct: 148  LPITVQK-FPS----EKVVYYPSSEEERKFVHSLELYKDPEIVVVNKPPGMPVQGGIGIK 202

Query: 1087 RSLDELAAAYLRCNDSEFPRLVHRLDRDCSGVLVMGRTQLSASVLHTIFREKTCEASKHD 908
            RSLDELAA Y+R   SE PRLVHRLDRDCSG+LVMGRTQLSAS LH+IFREKT ++   D
Sbjct: 203  RSLDELAAKYMRHEYSEAPRLVHRLDRDCSGLLVMGRTQLSASALHSIFREKTFDSQNED 262

Query: 907  LEQRREIIQKTYWALVIGSPRRSKGLISVPLQKVVMDNGKFERITVADNAQSSLAQSAIT 728
            LE ++ I+QK YWALVIG PRRS G+IS PL K+V+DNGK ERIT+  + ++  AQ A+T
Sbjct: 263  LESKKRILQKKYWALVIGCPRRSGGIISAPLGKLVLDNGKSERITIMSDVRAPSAQYAVT 322

Query: 727  EYRIIGSPCCGYTWLELSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQVHKNLE--PFPC 554
            EYRIIGS   GYTWLELSPLTGRKHQLRVHCAE LGTPIVGDYKYGWQ H+ L+  P P 
Sbjct: 323  EYRIIGSSEKGYTWLELSPLTGRKHQLRVHCAEALGTPIVGDYKYGWQAHRKLKHLPLPT 382

Query: 553  SGLSQDPQEELTNKKLDPFGLNLQSGNISDKQPYLHLHCKEMILPDISVAAQRAKSPTDF 374
            S L+   Q  +  +K DPF L L +G+ISDKQP+LHLHCKEM+LP+IS+A QRA+  +D 
Sbjct: 383  SVLNLGVQ--IPRQKPDPFNLRLGNGSISDKQPHLHLHCKEMVLPNISLALQRAQVVSDT 440

Query: 373  DIEDLESIKFDAPLPSHMQKSWDLLIS 293
            D+ D+ESIK  APLP HMQKSWD L S
Sbjct: 441  DLVDVESIKLVAPLPFHMQKSWDCLSS 467


>ref|XP_004230733.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial-like [Solanum
            lycopersicum]
          Length = 467

 Score =  419 bits (1077), Expect = e-114
 Identities = 213/323 (65%), Positives = 250/323 (77%), Gaps = 3/323 (0%)
 Frame = -1

Query: 1258 LPVTVEKKSPSVQGKAKVTY---SEEEMKFLHSLILYKDPAVVVINKPPGMPVQGGIGVK 1088
            LP+TV+K  PS     KV Y   SEEE KF+HSL LYKD  ++V+NKPPGMPVQGGIG+K
Sbjct: 148  LPITVQK-FPS----EKVVYYPSSEEERKFVHSLELYKDAEIIVVNKPPGMPVQGGIGIK 202

Query: 1087 RSLDELAAAYLRCNDSEFPRLVHRLDRDCSGVLVMGRTQLSASVLHTIFREKTCEASKHD 908
            RSLDELAA Y+    SE PRLVHRLDRDCSG+LVMGRTQLSAS LH+IFREKT ++   D
Sbjct: 203  RSLDELAAKYMSHQYSEAPRLVHRLDRDCSGLLVMGRTQLSASALHSIFREKTFDSQNED 262

Query: 907  LEQRREIIQKTYWALVIGSPRRSKGLISVPLQKVVMDNGKFERITVADNAQSSLAQSAIT 728
            LE ++ I+QK YWALVIG PRRS G+IS PL K+V+DNGK ERIT+  + +   AQ A+T
Sbjct: 263  LESKKRILQKKYWALVIGCPRRSGGIISAPLGKLVLDNGKSERITIMSDVREPSAQYAVT 322

Query: 727  EYRIIGSPCCGYTWLELSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQVHKNLEPFPCSG 548
            EYRIIGS   GYTWLELSPLTGRKHQLRVHCAE LGTPIVGDYKYGWQ H+ L+  P   
Sbjct: 323  EYRIIGSSEKGYTWLELSPLTGRKHQLRVHCAEALGTPIVGDYKYGWQAHRKLKHLPLPT 382

Query: 547  LSQDPQEELTNKKLDPFGLNLQSGNISDKQPYLHLHCKEMILPDISVAAQRAKSPTDFDI 368
               +   E+  +K DPF L L +G+ISDKQP+LHLHCKEM+LP+IS+A QRA+  +D D+
Sbjct: 383  SVLNLVVEIPRQKPDPFNLRLGNGSISDKQPHLHLHCKEMVLPNISLALQRAQVVSDADL 442

Query: 367  EDLESIKFDAPLPSHMQKSWDLL 299
             D+ESIK  APLP HMQKSWD L
Sbjct: 443  VDVESIKLVAPLPFHMQKSWDCL 465


>gb|EMJ01009.1| hypothetical protein PRUPE_ppa004969mg [Prunus persica]
          Length = 483

 Score =  398 bits (1023), Expect = e-108
 Identities = 195/323 (60%), Positives = 250/323 (77%), Gaps = 4/323 (1%)
 Frame = -1

Query: 1258 LPVTVEK----KSPSVQGKAKVTYSEEEMKFLHSLILYKDPAVVVINKPPGMPVQGGIGV 1091
            LP++V++    K      K +   SEEE+ F+ SL LYKDPA++VINKPPGMPVQGGIG+
Sbjct: 158  LPLSVQEFPNDKQELPNDKKECYCSEEEVTFIRSLELYKDPAIIVINKPPGMPVQGGIGI 217

Query: 1090 KRSLDELAAAYLRCNDSEFPRLVHRLDRDCSGVLVMGRTQLSASVLHTIFREKTCEASKH 911
            KRSLDELAAA L  + SE PRLVHRLDRD SG+LVMGRTQ SA+VLH+IFREKT  AS  
Sbjct: 218  KRSLDELAAACLSYDFSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFGASND 277

Query: 910  DLEQRREIIQKTYWALVIGSPRRSKGLISVPLQKVVMDNGKFERITVADNAQSSLAQSAI 731
            +++  + I+Q+ YWALVIGSPR+ KGLIS PL KVV+DNGK +RIT+ +++Q+  +Q AI
Sbjct: 278  EIDDAKRILQRRYWALVIGSPRQRKGLISAPLGKVVVDNGKSDRITIVNDSQTLPSQHAI 337

Query: 730  TEYRIIGSPCCGYTWLELSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQVHKNLEPFPCS 551
            T+Y++IGSPC GYTWLEL+PLTGRKHQLRVHCAEVL TPIVGDYKYGWQ H+N +P   S
Sbjct: 338  TKYKVIGSPCPGYTWLELTPLTGRKHQLRVHCAEVLRTPIVGDYKYGWQTHRNWKPLAWS 397

Query: 550  GLSQDPQEELTNKKLDPFGLNLQSGNISDKQPYLHLHCKEMILPDISVAAQRAKSPTDFD 371
                   EE   +K  PF LN++SG++S+K P LHLHCK+M+LP++++A Q  K  +D D
Sbjct: 398  NNECHSDEEFPKRKNLPFDLNMESGSVSEKNPRLHLHCKQMVLPNVNLALQNVKLHSDSD 457

Query: 370  IEDLESIKFDAPLPSHMQKSWDL 302
            + +LES++  A LPS MQ+SW++
Sbjct: 458  LSELESLELVAALPSFMQRSWNI 480


>ref|XP_006486999.1| PREDICTED: RNA pseudouridine synthase 4, mitochondrial-like isoform
            X1 [Citrus sinensis] gi|568867349|ref|XP_006487000.1|
            PREDICTED: RNA pseudouridine synthase 4,
            mitochondrial-like isoform X2 [Citrus sinensis]
          Length = 362

 Score =  397 bits (1021), Expect = e-108
 Identities = 199/322 (61%), Positives = 251/322 (77%)
 Frame = -1

Query: 1258 LPVTVEKKSPSVQGKAKVTYSEEEMKFLHSLILYKDPAVVVINKPPGMPVQGGIGVKRSL 1079
            LP+++++ SPS + K   T  EEE++F+ SL LYKD A++VINKP GMPVQGGIG++RS+
Sbjct: 44   LPISIQE-SPSRKEKCPCT--EEEVEFIQSLELYKDSAIIVINKPHGMPVQGGIGIRRSI 100

Query: 1078 DELAAAYLRCNDSEFPRLVHRLDRDCSGVLVMGRTQLSASVLHTIFREKTCEASKHDLEQ 899
            DELAA  L  + SE PRLVHRLDRD SG+LVMGRTQ SA+VLH+IFREKT  ASK D + 
Sbjct: 101  DELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDN 160

Query: 898  RREIIQKTYWALVIGSPRRSKGLISVPLQKVVMDNGKFERITVADNAQSSLAQSAITEYR 719
             ++I+Q+ YWALV+G+PR SKG+IS PL KVV+DNGK +RITV +N Q   AQ A+T Y+
Sbjct: 161  EKKILQRWYWALVVGTPRCSKGVISAPLGKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQ 220

Query: 718  IIGSPCCGYTWLELSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQVHKNLEPFPCSGLSQ 539
            +I   C GYTWL+LSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ H+  + F  S LS+
Sbjct: 221  VIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLSK 280

Query: 538  DPQEELTNKKLDPFGLNLQSGNISDKQPYLHLHCKEMILPDISVAAQRAKSPTDFDIEDL 359
            D  EE+  +K   FGL+L+SG+I +KQP LHLHCKEM LP++S A Q+ +  +  D+  L
Sbjct: 281  DSNEEIPKEKTLHFGLDLESGSILEKQPRLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKL 340

Query: 358  ESIKFDAPLPSHMQKSWDLLIS 293
            E++K  APLPSHMQ+SWD+L S
Sbjct: 341  ETLKLVAPLPSHMQRSWDVLNS 362


>ref|XP_006422925.1| hypothetical protein CICLE_v10028283mg [Citrus clementina]
            gi|557524859|gb|ESR36165.1| hypothetical protein
            CICLE_v10028283mg [Citrus clementina]
          Length = 494

 Score =  394 bits (1013), Expect = e-107
 Identities = 198/322 (61%), Positives = 249/322 (77%)
 Frame = -1

Query: 1258 LPVTVEKKSPSVQGKAKVTYSEEEMKFLHSLILYKDPAVVVINKPPGMPVQGGIGVKRSL 1079
            LP+++++ SPS + K   T  EEE+ F+ SL LYKD A++VINKP GMPVQGGIG++RS+
Sbjct: 176  LPISIQE-SPSRKEKCPCT--EEEVGFIQSLELYKDSAIIVINKPHGMPVQGGIGIRRSI 232

Query: 1078 DELAAAYLRCNDSEFPRLVHRLDRDCSGVLVMGRTQLSASVLHTIFREKTCEASKHDLEQ 899
            DELAA  L  + SE PRLVHRLDRD SG+LVMGRTQ SA+VLH+IFREKT  ASK D + 
Sbjct: 233  DELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKEDNDN 292

Query: 898  RREIIQKTYWALVIGSPRRSKGLISVPLQKVVMDNGKFERITVADNAQSSLAQSAITEYR 719
             + I+Q+ YWALV+G+PR SKG+IS PL+KVV+DNGK +RITV +N Q   AQ A+T Y+
Sbjct: 293  EKRILQRWYWALVVGTPRCSKGVISAPLRKVVVDNGKSDRITVVNNDQIMSAQHAVTRYQ 352

Query: 718  IIGSPCCGYTWLELSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQVHKNLEPFPCSGLSQ 539
            +I   C GYTWL+LSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ H+  + F  S L++
Sbjct: 353  VIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFHPSDLNK 412

Query: 538  DPQEELTNKKLDPFGLNLQSGNISDKQPYLHLHCKEMILPDISVAAQRAKSPTDFDIEDL 359
            D  +E   +K   FGL+L+SG+I +KQP LHLHCKEM LP++S A Q+ +  +  D+  L
Sbjct: 413  DSNDETPKEKTLHFGLDLESGSILEKQPGLHLHCKEMTLPNVSQAIQKVQLSSGCDVSKL 472

Query: 358  ESIKFDAPLPSHMQKSWDLLIS 293
            ES+K  APLPSHMQ+SWD+L S
Sbjct: 473  ESLKLVAPLPSHMQRSWDVLNS 494


>ref|XP_002313876.2| hypothetical protein POPTR_0009s09860g [Populus trichocarpa]
            gi|550331407|gb|EEE87831.2| hypothetical protein
            POPTR_0009s09860g [Populus trichocarpa]
          Length = 471

 Score =  394 bits (1013), Expect = e-107
 Identities = 189/300 (63%), Positives = 237/300 (79%)
 Frame = -1

Query: 1198 SEEEMKFLHSLILYKDPAVVVINKPPGMPVQGGIGVKRSLDELAAAYLRCNDSEFPRLVH 1019
            +EEE+ F+  L LYKD A++V+NKPPGMPVQGGIG+KRSLDEL+A+    + SE PRLVH
Sbjct: 171  NEEEINFIRGLELYKDAAIIVVNKPPGMPVQGGIGIKRSLDELSASCFSSDYSEPPRLVH 230

Query: 1018 RLDRDCSGVLVMGRTQLSASVLHTIFREKTCEASKHDLEQRREIIQKTYWALVIGSPRRS 839
            RLDRDCSG+LVMGRTQ SA+VLH IFREKT  AS  D+  +R I+Q+ YWALVIGSPRR 
Sbjct: 231  RLDRDCSGILVMGRTQTSATVLHAIFREKTLAASNDDVGNKRRILQRKYWALVIGSPRRP 290

Query: 838  KGLISVPLQKVVMDNGKFERITVADNAQSSLAQSAITEYRIIGSPCCGYTWLELSPLTGR 659
            KGLIS PL KVV+DNGK +RITV +N+Q+  +Q A+T+YR+I S   G+TWLELSPLTGR
Sbjct: 291  KGLISAPLGKVVVDNGKSDRITVVENSQNLSSQHAVTQYRVIES-SHGFTWLELSPLTGR 349

Query: 658  KHQLRVHCAEVLGTPIVGDYKYGWQVHKNLEPFPCSGLSQDPQEELTNKKLDPFGLNLQS 479
            KHQLRVHCAEVLGTPIVGDYKY WQ H+N +    S +  +  ++  ++K+ PF L+L S
Sbjct: 350  KHQLRVHCAEVLGTPIVGDYKYAWQAHRNWKQLQWSNIEDNSNDKSLSEKILPFALDLDS 409

Query: 478  GNISDKQPYLHLHCKEMILPDISVAAQRAKSPTDFDIEDLESIKFDAPLPSHMQKSWDLL 299
            G+IS+K P LHLHCK+M+LPD+S A Q  +  +D+D   L S+KFDAPLP +M+KSWD+L
Sbjct: 410  GSISEKHPRLHLHCKQMVLPDVSKALQDVQLSSDYDFSQLASLKFDAPLPPYMKKSWDIL 469


>ref|XP_002518674.1| ribosomal pseudouridine synthase, putative [Ricinus communis]
            gi|223542055|gb|EEF43599.1| ribosomal pseudouridine
            synthase, putative [Ricinus communis]
          Length = 536

 Score =  394 bits (1011), Expect = e-107
 Identities = 190/308 (61%), Positives = 240/308 (77%)
 Frame = -1

Query: 1216 KAKVTYSEEEMKFLHSLILYKDPAVVVINKPPGMPVQGGIGVKRSLDELAAAYLRCNDSE 1037
            K K    E+E  F+  L LYKD A++V+NKPPGMPVQGGIG+K S DELAA+ L  + SE
Sbjct: 230  KQKCHCGEKEANFIRGLELYKDEAIIVVNKPPGMPVQGGIGIKSSFDELAASCLSYDYSE 289

Query: 1036 FPRLVHRLDRDCSGVLVMGRTQLSASVLHTIFREKTCEASKHDLEQRREIIQKTYWALVI 857
             PRLVHRLDRD SG+LVMGRTQ S  VLH++FREKT  AS HD+ +RR I+Q+ YWALVI
Sbjct: 290  PPRLVHRLDRDSSGILVMGRTQTSTMVLHSVFREKTFAASNHDIGERRRILQRKYWALVI 349

Query: 856  GSPRRSKGLISVPLQKVVMDNGKFERITVADNAQSSLAQSAITEYRIIGSPCCGYTWLEL 677
            GSPRR KG+IS PL KVV+D+GK +RITV +NA+S+  Q A+T+YR++ S   GY WLEL
Sbjct: 350  GSPRRQKGIISAPLGKVVVDDGKSDRITVVENAESTSFQHAVTQYRVMES-SHGYAWLEL 408

Query: 676  SPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQVHKNLEPFPCSGLSQDPQEELTNKKLDPF 497
            SP+TGRKHQLRVHCAEVLGTPIVGDYKYGWQVH+  +  P   L +   E    KK+ PF
Sbjct: 409  SPITGRKHQLRVHCAEVLGTPIVGDYKYGWQVHRKWKQLPFPNLEKISNENALCKKILPF 468

Query: 496  GLNLQSGNISDKQPYLHLHCKEMILPDISVAAQRAKSPTDFDIEDLESIKFDAPLPSHMQ 317
            G++L+SG+IS+K P LHLHCK+M+LPD+S A +  ++ +++D  DL+SI+ DAPLPS+MQ
Sbjct: 469  GIDLESGSISEKHPRLHLHCKQMVLPDVSQALRGVQTSSNYDFSDLKSIELDAPLPSYMQ 528

Query: 316  KSWDLLIS 293
            +SWD+L S
Sbjct: 529  RSWDILNS 536


>gb|EMJ01008.1| hypothetical protein PRUPE_ppa004969mg [Prunus persica]
          Length = 481

 Score =  392 bits (1007), Expect = e-106
 Identities = 194/323 (60%), Positives = 249/323 (77%), Gaps = 4/323 (1%)
 Frame = -1

Query: 1258 LPVTVEK----KSPSVQGKAKVTYSEEEMKFLHSLILYKDPAVVVINKPPGMPVQGGIGV 1091
            LP++V++    K      K +   SEEE+ F+ SL LYKDPA++VINKPPGMPVQGGIG+
Sbjct: 158  LPLSVQEFPNDKQELPNDKKECYCSEEEVTFIRSLELYKDPAIIVINKPPGMPVQGGIGI 217

Query: 1090 KRSLDELAAAYLRCNDSEFPRLVHRLDRDCSGVLVMGRTQLSASVLHTIFREKTCEASKH 911
            KRSLDELAAA L  + SE PRLVHRLDRD SG+LVMGRTQ SA+VLH+IFREKT  AS  
Sbjct: 218  KRSLDELAAACLSYDFSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFGASND 277

Query: 910  DLEQRREIIQKTYWALVIGSPRRSKGLISVPLQKVVMDNGKFERITVADNAQSSLAQSAI 731
            +++  + I+Q+ YWALVIGSPR+ KGLIS PL KVV+DNGK +RIT+ +++Q+  +Q AI
Sbjct: 278  EIDDAKRILQRRYWALVIGSPRQRKGLISAPLGKVVVDNGKSDRITIVNDSQTLPSQHAI 337

Query: 730  TEYRIIGSPCCGYTWLELSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQVHKNLEPFPCS 551
            T+Y++IGSPC  YTWLEL+PLTGRKHQLRVHCAEVL TPIVGDYKYGWQ H+N +P   S
Sbjct: 338  TKYKVIGSPC--YTWLELTPLTGRKHQLRVHCAEVLRTPIVGDYKYGWQTHRNWKPLAWS 395

Query: 550  GLSQDPQEELTNKKLDPFGLNLQSGNISDKQPYLHLHCKEMILPDISVAAQRAKSPTDFD 371
                   EE   +K  PF LN++SG++S+K P LHLHCK+M+LP++++A Q  K  +D D
Sbjct: 396  NNECHSDEEFPKRKNLPFDLNMESGSVSEKNPRLHLHCKQMVLPNVNLALQNVKLHSDSD 455

Query: 370  IEDLESIKFDAPLPSHMQKSWDL 302
            + +LES++  A LPS MQ+SW++
Sbjct: 456  LSELESLELVAALPSFMQRSWNI 478


>gb|EOX98365.1| Ribosomal pseudouridine synthase, putative [Theobroma cacao]
          Length = 477

 Score =  389 bits (998), Expect = e-105
 Identities = 187/302 (61%), Positives = 239/302 (79%)
 Frame = -1

Query: 1198 SEEEMKFLHSLILYKDPAVVVINKPPGMPVQGGIGVKRSLDELAAAYLRCNDSEFPRLVH 1019
            +EEE+ F+  L LYKDPA++V+NKPPGMPVQGGIG+K SLD+LAAA L  + SE PRLVH
Sbjct: 176  TEEELNFIRGLELYKDPAIIVLNKPPGMPVQGGIGIKWSLDKLAAACLCFDYSEPPRLVH 235

Query: 1018 RLDRDCSGVLVMGRTQLSASVLHTIFREKTCEASKHDLEQRREIIQKTYWALVIGSPRRS 839
            RLDRD SG+LVMGRTQ+SA++LH++FRE+T +ASK D++  + I+QK YWALVIGSPRR 
Sbjct: 236  RLDRDSSGILVMGRTQMSATILHSVFREETNDASKDDVDNEKRILQKRYWALVIGSPRRP 295

Query: 838  KGLISVPLQKVVMDNGKFERITVADNAQSSLAQSAITEYRIIGSPCCGYTWLELSPLTGR 659
            KG+I  PL+KVV+D+GK +RITV DN+Q   +Q A TEY++I +   GYTWLELSPLTGR
Sbjct: 296  KGMIVAPLRKVVVDDGKSDRITVFDNSQIVSSQRAKTEYQVIKTTSHGYTWLELSPLTGR 355

Query: 658  KHQLRVHCAEVLGTPIVGDYKYGWQVHKNLEPFPCSGLSQDPQEELTNKKLDPFGLNLQS 479
            KHQLRVHCAEVLGTPIVGDYKYGWQ H+  +  P S L +   ++   + + PFGLN+ S
Sbjct: 356  KHQLRVHCAEVLGTPIVGDYKYGWQAHRRWQHLPESDLKKSSNDKCPEENMLPFGLNMDS 415

Query: 478  GNISDKQPYLHLHCKEMILPDISVAAQRAKSPTDFDIEDLESIKFDAPLPSHMQKSWDLL 299
            G+IS K+P LHLHC+EMI P++S A Q  +  TD D+  L+S++  APLPS+MQKSWD++
Sbjct: 416  GSISAKRPRLHLHCREMIFPNVSQALQNLQLSTDHDLSKLKSLEVVAPLPSYMQKSWDIM 475

Query: 298  IS 293
             S
Sbjct: 476  NS 477


>ref|XP_004305959.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial-like [Fragaria
            vesca subsp. vesca]
          Length = 476

 Score =  382 bits (980), Expect = e-103
 Identities = 190/319 (59%), Positives = 243/319 (76%)
 Frame = -1

Query: 1258 LPVTVEKKSPSVQGKAKVTYSEEEMKFLHSLILYKDPAVVVINKPPGMPVQGGIGVKRSL 1079
            LP++V++     Q +     SEEE +F+ SL+LYKDPA++VINKPPG+PVQGGIG+KRSL
Sbjct: 147  LPISVKEFPDHKQKEGHC--SEEEAEFIRSLVLYKDPAIIVINKPPGLPVQGGIGIKRSL 204

Query: 1078 DELAAAYLRCNDSEFPRLVHRLDRDCSGVLVMGRTQLSASVLHTIFREKTCEASKHDLEQ 899
            DELAA  L  + S+ PRLVHRLDRDCSG+LVMGRTQ SA+VLH++FREKT  AS   ++ 
Sbjct: 205  DELAATCLSYDLSQPPRLVHRLDRDCSGILVMGRTQTSATVLHSVFREKTFGASDDVIKH 264

Query: 898  RREIIQKTYWALVIGSPRRSKGLISVPLQKVVMDNGKFERITVADNAQSSLAQSAITEYR 719
             + I+Q+ Y ALVIGSPR+ +GLISVPL KVV+DNGK +RIT+ + AQ   +Q AIT+Y+
Sbjct: 265  AKSILQRRYLALVIGSPRQQEGLISVPLGKVVVDNGKSDRITILNKAQCLPSQHAITKYK 324

Query: 718  IIGSPCCGYTWLELSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQVHKNLEPFPCSGLSQ 539
            +IGS C G+TWLEL PLTGRKHQLRVHCAEVLGTPIVGDYKYGW+ HK+ +P   S    
Sbjct: 325  VIGSSCPGFTWLELIPLTGRKHQLRVHCAEVLGTPIVGDYKYGWRTHKDWKPVAWSKTEC 384

Query: 538  DPQEELTNKKLDPFGLNLQSGNISDKQPYLHLHCKEMILPDISVAAQRAKSPTDFDIEDL 359
               EE + +K  PF LN+ SG+I +K   LHLH K+M+LP++S+A Q  K   + D+  L
Sbjct: 385  HSNEERSKRKNLPFDLNMDSGSIDEKNLRLHLHSKQMVLPNVSLALQNVKLHAECDLSGL 444

Query: 358  ESIKFDAPLPSHMQKSWDL 302
            ESI+  AP+PS+MQKSWD+
Sbjct: 445  ESIELVAPMPSYMQKSWDI 463


>gb|EXB63685.1| RNA pseudourine synthase 4 [Morus notabilis]
          Length = 470

 Score =  379 bits (974), Expect = e-102
 Identities = 186/319 (58%), Positives = 240/319 (75%)
 Frame = -1

Query: 1258 LPVTVEKKSPSVQGKAKVTYSEEEMKFLHSLILYKDPAVVVINKPPGMPVQGGIGVKRSL 1079
            LP++V++       K +   +EEE+KF+ SL LYKDPA+VV+NKPPG+PVQGGIG+K SL
Sbjct: 152  LPISVKELPVE---KKECFCNEEEVKFIRSLELYKDPAIVVVNKPPGLPVQGGIGIKTSL 208

Query: 1078 DELAAAYLRCNDSEFPRLVHRLDRDCSGVLVMGRTQLSASVLHTIFREKTCEASKHDLEQ 899
            D+LA   L  + +E PRLVHRLDRDCSG+LVMGRTQ SA+VLH+IFREKT  AS  +  +
Sbjct: 209  DQLAVTCLSYDYTEPPRLVHRLDRDCSGILVMGRTQTSATVLHSIFREKTFGASNDETVK 268

Query: 898  RREIIQKTYWALVIGSPRRSKGLISVPLQKVVMDNGKFERITVADNAQSSLAQSAITEYR 719
             + ++Q+ YWA VIGSPR   GLIS PL+KVV+DNGK +RITV + + +  +Q AIT+Y+
Sbjct: 269  GKIVLQRRYWAFVIGSPRHPNGLISAPLRKVVLDNGKSDRITVVNGSHTLSSQHAITKYK 328

Query: 718  IIGSPCCGYTWLELSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQVHKNLEPFPCSGLSQ 539
            +IGS   GYTWLELSPLTGRKHQLRVHCAEVLGTP+VGDYKYGWQ H++ +P        
Sbjct: 329  VIGSSSHGYTWLELSPLTGRKHQLRVHCAEVLGTPMVGDYKYGWQAHRDWKPLHWPDPDN 388

Query: 538  DPQEELTNKKLDPFGLNLQSGNISDKQPYLHLHCKEMILPDISVAAQRAKSPTDFDIEDL 359
               E L  +K  PFGLN+ +G+IS+K P LHLHCK+M+LP+IS   Q  +  +D+++  L
Sbjct: 389  KCIEVLPKRKNLPFGLNMDNGSISEKHPRLHLHCKQMVLPNISHVLQNVQRYSDYELSRL 448

Query: 358  ESIKFDAPLPSHMQKSWDL 302
            E +K DAPLPS+MQ+SW L
Sbjct: 449  ERLKLDAPLPSYMQRSWHL 467


>ref|XP_004511295.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial-like [Cicer
            arietinum]
          Length = 458

 Score =  374 bits (961), Expect = e-101
 Identities = 191/322 (59%), Positives = 245/322 (76%), Gaps = 3/322 (0%)
 Frame = -1

Query: 1258 LPVTVEKKSPSVQG-KAKVTYSEEEMKFLHSLILYKDPAVVVINKPPGMPVQGGIGVKRS 1082
            LP +V+++    Q  K  +T + +++KF+ SL++YKDPA VV+NKPPGMPVQGGI +K S
Sbjct: 136  LPNSVKQQHQHQQTPKQPLTLTPKQIKFMRSLVIYKDPATVVLNKPPGMPVQGGINIKWS 195

Query: 1081 LDELAAAYLRCNDSEFPRLVHRLDRDCSGVLVMGRTQLSASVLHTIFREKTCEASKHDLE 902
            LD LAA+ L  + S+ PRLVHRLDRDCSG+LVMGRTQ S  VLH+IFR+KT  AS H+  
Sbjct: 196  LDALAASSLNYDYSQPPRLVHRLDRDCSGILVMGRTQTSTVVLHSIFRDKTSRASDHNDT 255

Query: 901  QRREIIQKTYWALVIGSPRRSKGLISVPLQKVVMDNGKFERITVADNAQSSLAQSAITEY 722
            ++R I+Q+ YWALVIG PRRS GLI+ PL KVV+DNGK +RIT+ +N+    +Q A+TEY
Sbjct: 256  EKR-ILQRRYWALVIGRPRRSGGLITSPLGKVVVDNGKSDRITIVNNSTLVSSQHAVTEY 314

Query: 721  RIIGSPCCGYTWLELSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQVHKNLEPFPCSGLS 542
            R++GS   GYTWLELSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ HK    F    L 
Sbjct: 315  RVLGSSSDGYTWLELSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHKKWGHFDLCNL- 373

Query: 541  QDPQEELTNKKLDPFGLNLQSGNISDKQPYLHLHCKEMILPDISVAAQ--RAKSPTDFDI 368
            +D  EEL  ++  PFGLNL  G+ISDK P LHLHCK++ILP+IS A Q  ++ S ++ D+
Sbjct: 374  EDSTEELLKEETLPFGLNLNKGSISDKHPRLHLHCKQIILPNISQALQDVQSLSASNCDL 433

Query: 367  EDLESIKFDAPLPSHMQKSWDL 302
              +E++K +A LP +MQ+SWD+
Sbjct: 434  SVVEALKLEAELPPYMQRSWDV 455


>ref|XP_004137095.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial-like [Cucumis
            sativus]
          Length = 466

 Score =  371 bits (953), Expect = e-100
 Identities = 192/324 (59%), Positives = 243/324 (75%), Gaps = 2/324 (0%)
 Frame = -1

Query: 1258 LPVTVEKKSPSVQGKAKVTYSEEEMKFLHSLILYKDPAVVVINKPPGMPVQGGIGVKRSL 1079
            LP++V+  S     K +   ++EE  F+HSL+L+KDPA++VINKPPG+PVQGGIGVKRSL
Sbjct: 154  LPMSVQVFSTE---KTRDYCNKEEETFMHSLVLHKDPAILVINKPPGLPVQGGIGVKRSL 210

Query: 1078 DELAAAYLRCNDSEFPRLVHRLDRDCSGVLVMGRTQLSASVLHTIFREKTCEASKH--DL 905
            DELAA+ L    SE PRLVHRLDRD SG+L+MGRT  S S+LH++FREKT EASKH   +
Sbjct: 211  DELAASCLSYGYSEPPRLVHRLDRDSSGILIMGRTSTSTSLLHSVFREKTFEASKHANHV 270

Query: 904  EQRREIIQKTYWALVIGSPRRSKGLISVPLQKVVMDNGKFERITVADNAQSSLAQSAITE 725
            +  ++I+ K YWALVIGSPRRSKGLI+ PL K+V+D+G+ E+I V DNA+    Q AIT+
Sbjct: 271  DSEKKILLKRYWALVIGSPRRSKGLITAPLGKIVLDDGRSEQIMVIDNAEPMPFQQAITQ 330

Query: 724  YRIIGSPCCGYTWLELSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQVHKNLEPFPCSGL 545
            Y++I S   GYTWLEL PLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ HKN +PF CS  
Sbjct: 331  YKVIKSH-HGYTWLELCPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHKNWKPF-CSNF 388

Query: 544  SQDPQEELTNKKLDPFGLNLQSGNISDKQPYLHLHCKEMILPDISVAAQRAKSPTDFDIE 365
             ++  +    K+  PFGL+ +SG+I++  P LHLHCK++ LPD+S A        D D  
Sbjct: 389  HKNQGK----KQFLPFGLDFESGSIAENNPRLHLHCKQLTLPDVSFALH--NDSLDRDCS 442

Query: 364  DLESIKFDAPLPSHMQKSWDLLIS 293
             LE ++ DAPLPS+MQKSWD++ S
Sbjct: 443  RLECLELDAPLPSYMQKSWDIINS 466


>ref|XP_004170490.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial-like [Cucumis
            sativus]
          Length = 471

 Score =  371 bits (952), Expect = e-100
 Identities = 191/322 (59%), Positives = 242/322 (75%), Gaps = 2/322 (0%)
 Frame = -1

Query: 1258 LPVTVEKKSPSVQGKAKVTYSEEEMKFLHSLILYKDPAVVVINKPPGMPVQGGIGVKRSL 1079
            LP++V+  S     K +   ++EE  F+HSL+L+KDPA++VINKPPG+PVQGGIGVKRSL
Sbjct: 159  LPMSVQVFSTE---KTRDYCNKEEETFMHSLVLHKDPAILVINKPPGLPVQGGIGVKRSL 215

Query: 1078 DELAAAYLRCNDSEFPRLVHRLDRDCSGVLVMGRTQLSASVLHTIFREKTCEASKH--DL 905
            DELAA+ L    SE PRLVHRLDRD SG+L+MGRT  S S+LH++FREKT EASKH   +
Sbjct: 216  DELAASCLSYGYSEPPRLVHRLDRDSSGILIMGRTSTSTSLLHSVFREKTFEASKHANHV 275

Query: 904  EQRREIIQKTYWALVIGSPRRSKGLISVPLQKVVMDNGKFERITVADNAQSSLAQSAITE 725
            +  ++I+ K YWALVIGSPRRSKGLI+ PL K+V+D+G+ E+I V DNA+    Q AIT+
Sbjct: 276  DSEKKILLKRYWALVIGSPRRSKGLITAPLGKIVLDDGRSEQIMVIDNAEPMPFQQAITQ 335

Query: 724  YRIIGSPCCGYTWLELSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQVHKNLEPFPCSGL 545
            Y++I S   GYTWLEL PLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ HKN +PF CS  
Sbjct: 336  YKVIKSH-HGYTWLELCPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHKNWKPF-CSNF 393

Query: 544  SQDPQEELTNKKLDPFGLNLQSGNISDKQPYLHLHCKEMILPDISVAAQRAKSPTDFDIE 365
             ++  +    K+  PFGL+ +SG+I++  P LHLHCK++ LPD+S A        D D  
Sbjct: 394  HKNQGK----KQFLPFGLDFESGSIAENSPRLHLHCKQLTLPDVSFALH--NDSLDRDCS 447

Query: 364  DLESIKFDAPLPSHMQKSWDLL 299
             LE ++ DAPLPS+MQKSWD++
Sbjct: 448  RLECLELDAPLPSYMQKSWDII 469


>ref|XP_002883182.1| pseudouridine synthase family protein [Arabidopsis lyrata subsp.
            lyrata] gi|297329022|gb|EFH59441.1| pseudouridine
            synthase family protein [Arabidopsis lyrata subsp.
            lyrata]
          Length = 477

 Score =  370 bits (950), Expect = e-100
 Identities = 188/324 (58%), Positives = 240/324 (74%), Gaps = 2/324 (0%)
 Frame = -1

Query: 1258 LPVTVEKKSPSVQGKAKVTY--SEEEMKFLHSLILYKDPAVVVINKPPGMPVQGGIGVKR 1085
            LP++V+  +P      K ++  SEEE KF+ SL+LYKDPA++V+NKP G+ VQGG G+K 
Sbjct: 152  LPLSVDNDTPPTPPAKKESFQCSEEERKFVCSLVLYKDPAIIVLNKPHGLAVQGGSGIKT 211

Query: 1084 SLDELAAAYLRCNDSEFPRLVHRLDRDCSGVLVMGRTQLSASVLHTIFREKTCEASKHDL 905
            S+DELAA  L  + SE PRLVHRLDRDCSG+LV+ RTQ +A+VLH+IFREKTC AS + +
Sbjct: 212  SIDELAATCLTFDKSESPRLVHRLDRDCSGLLVLARTQTAATVLHSIFREKTCGASAYGV 271

Query: 904  EQRREIIQKTYWALVIGSPRRSKGLISVPLQKVVMDNGKFERITVADNAQSSLAQSAITE 725
            ++  + +++ Y ALVIG PRR KG IS PL+KVV+D+GK +RITV DN +    Q AITE
Sbjct: 272  KKNIKSLKRKYMALVIGCPRRQKGQISAPLRKVVVDDGKSDRITVNDNGELVSTQHAITE 331

Query: 724  YRIIGSPCCGYTWLELSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQVHKNLEPFPCSGL 545
            Y++I S   GYTWLEL PLTGRKHQLRVHCAEVLGTPI+GDYKYGWQ HK  EPF  S  
Sbjct: 332  YKVIESSPHGYTWLELRPLTGRKHQLRVHCAEVLGTPILGDYKYGWQAHKAREPFVSS-- 389

Query: 544  SQDPQEELTNKKLDPFGLNLQSGNISDKQPYLHLHCKEMILPDISVAAQRAKSPTDFDIE 365
                +   T     PFGL+L  G++S KQP+LHLH K++ LP+IS   ++ +  +D DI 
Sbjct: 390  ----ETTPTKPSSSPFGLDLDGGDVSSKQPHLHLHSKQIDLPNISQLLEKMQVSSDSDIS 445

Query: 364  DLESIKFDAPLPSHMQKSWDLLIS 293
            DL+S+KFDAPLPSHMQ S++LL S
Sbjct: 446  DLDSLKFDAPLPSHMQLSFNLLKS 469


>gb|ESW29223.1| hypothetical protein PHAVU_002G053600g [Phaseolus vulgaris]
          Length = 432

 Score =  369 bits (947), Expect = 1e-99
 Identities = 183/319 (57%), Positives = 239/319 (74%)
 Frame = -1

Query: 1258 LPVTVEKKSPSVQGKAKVTYSEEEMKFLHSLILYKDPAVVVINKPPGMPVQGGIGVKRSL 1079
            LP +V++K P+   K   + + +++ F+ +L+++KDPA++V+NKPPGMPVQGGI +K SL
Sbjct: 114  LPQSVQQK-PTPTRKPHSSLTPQQINFIRTLVIHKDPAILVLNKPPGMPVQGGINIKHSL 172

Query: 1078 DELAAAYLRCNDSEFPRLVHRLDRDCSGVLVMGRTQLSASVLHTIFREKTCEASKHDLEQ 899
            D +AAA L    SE PRLVHRLDRDCSG+LVMGRTQ S +VLH+IFREKT  A   D E+
Sbjct: 173  DVVAAACLNYEYSEPPRLVHRLDRDCSGILVMGRTQTSTTVLHSIFREKTSRALD-DTEE 231

Query: 898  RREIIQKTYWALVIGSPRRSKGLISVPLQKVVMDNGKFERITVADNAQSSLAQSAITEYR 719
             + I+Q+ YWALV+G PR SKGL++  L KVV+DNGK +RITV DN+ S  +Q AITEYR
Sbjct: 232  EKRILQRRYWALVLGRPRCSKGLVTASLGKVVVDNGKSDRITVVDNSTSLSSQHAITEYR 291

Query: 718  IIGSPCCGYTWLELSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQVHKNLEPFPCSGLSQ 539
            +I S   GYTWLELSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ H+    F  S +  
Sbjct: 292  VIASSSQGYTWLELSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHRKWGNFDLSNVED 351

Query: 538  DPQEELTNKKLDPFGLNLQSGNISDKQPYLHLHCKEMILPDISVAAQRAKSPTDFDIEDL 359
              +E L  + L PFGLNL +G+IS+ +P LHLHCK+++LP+IS A Q  +S ++ D+  +
Sbjct: 352  SCEEHLKEETL-PFGLNLNNGSISENRPRLHLHCKKIVLPNISEALQNVQSFSNCDLSQV 410

Query: 358  ESIKFDAPLPSHMQKSWDL 302
            E ++  A LP +MQ+SWD+
Sbjct: 411  EGLQLVADLPPYMQRSWDI 429


>ref|NP_188575.1| RNA pseudourine synthase 4 [Arabidopsis thaliana]
            gi|75274073|sp|Q9LT72.1|PUS4_ARATH RecName: Full=RNA
            pseudouridine synthase 4, mitochondrial; AltName:
            Full=RNA pseudouridylate synthase 4; AltName:
            Full=RNA-uridine isomerase 4; Flags: Precursor
            gi|11994467|dbj|BAB02469.1| unnamed protein product
            [Arabidopsis thaliana] gi|110737723|dbj|BAF00800.1|
            hypothetical protein [Arabidopsis thaliana]
            gi|134031916|gb|ABO45695.1| At3g19440 [Arabidopsis
            thaliana] gi|332642719|gb|AEE76240.1| RNA pseudourine
            synthase 4 [Arabidopsis thaliana]
          Length = 477

 Score =  368 bits (945), Expect = 2e-99
 Identities = 187/324 (57%), Positives = 241/324 (74%), Gaps = 2/324 (0%)
 Frame = -1

Query: 1258 LPVTVEKKSPSVQGKAKVTY--SEEEMKFLHSLILYKDPAVVVINKPPGMPVQGGIGVKR 1085
            LP++V+  +P      K ++  S+EE KF+ SL+LYKDPA++V+NKP G+ VQGG G+K 
Sbjct: 152  LPLSVDNDTPQTPPAKKESFQCSDEERKFVCSLVLYKDPAIIVLNKPHGLAVQGGSGIKT 211

Query: 1084 SLDELAAAYLRCNDSEFPRLVHRLDRDCSGVLVMGRTQLSASVLHTIFREKTCEASKHDL 905
            S+DELAA+ L+ + SE PRLVHRLDRDCSG+LV+ RTQ +A+VLH+IFREKT  AS + +
Sbjct: 212  SIDELAASCLKFDKSESPRLVHRLDRDCSGLLVLARTQTAATVLHSIFREKTTGASAYGV 271

Query: 904  EQRREIIQKTYWALVIGSPRRSKGLISVPLQKVVMDNGKFERITVADNAQSSLAQSAITE 725
            ++  + +++ Y ALVIG P R +G IS PL+KVV+D+GK ERITV DN +    Q AITE
Sbjct: 272  KKNVKSLKRKYMALVIGCPPRQRGQISAPLRKVVVDDGKSERITVNDNGELVSTQHAITE 331

Query: 724  YRIIGSPCCGYTWLELSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQVHKNLEPFPCSGL 545
            YR+I S   GYTWLEL PLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ HK  EPF  S  
Sbjct: 332  YRVIESSPHGYTWLELRPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHKAREPFVSS-- 389

Query: 544  SQDPQEELTNKKLDPFGLNLQSGNISDKQPYLHLHCKEMILPDISVAAQRAKSPTDFDIE 365
                +   T +   PFGL+L  G++S KQP+LHLH K++ LP+IS   ++ +  +D DI 
Sbjct: 390  ----ENNPTKQSSSPFGLDLDGGDVSSKQPHLHLHSKQIDLPNISQLLEKMQVSSDSDIS 445

Query: 364  DLESIKFDAPLPSHMQKSWDLLIS 293
            DL+S+KFDAPLPSHMQ S++LL S
Sbjct: 446  DLDSLKFDAPLPSHMQLSFNLLKS 469


>ref|XP_006573909.1| PREDICTED: RNA pseudouridine synthase 4, mitochondrial-like isoform
            X2 [Glycine max]
          Length = 429

 Score =  366 bits (939), Expect = 1e-98
 Identities = 180/312 (57%), Positives = 234/312 (75%), Gaps = 3/312 (0%)
 Frame = -1

Query: 1228 SVQGKAKVTYSE---EEMKFLHSLILYKDPAVVVINKPPGMPVQGGIGVKRSLDELAAAY 1058
            SV+ K   T+S    +++ F+ +L++YKDPA++V+NKPPGMPVQGGI +KRSLD +AAA 
Sbjct: 117  SVKVKQTPTHSHLTPQQINFIRTLVIYKDPAILVLNKPPGMPVQGGINIKRSLDAVAAAS 176

Query: 1057 LRCNDSEFPRLVHRLDRDCSGVLVMGRTQLSASVLHTIFREKTCEASKHDLEQRREIIQK 878
            L    S+ PRLVHRLDRDCSG+LVMGRT  S +VLH+IFREKT  AS  D+ + + I+Q+
Sbjct: 177  LNYGYSQPPRLVHRLDRDCSGILVMGRTHTSTTVLHSIFREKTSRASD-DIGKEKRILQR 235

Query: 877  TYWALVIGSPRRSKGLISVPLQKVVMDNGKFERITVADNAQSSLAQSAITEYRIIGSPCC 698
             YWALV+G PRR KGL++  L KVV+DNG+ +RIT+ DN+    +Q AITEYR+I S   
Sbjct: 236  RYWALVLGCPRRPKGLVTASLGKVVVDNGRSDRITIVDNSTLMSSQHAITEYRVIASSSQ 295

Query: 697  GYTWLELSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQVHKNLEPFPCSGLSQDPQEELT 518
            GYTWLEL+PLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ H+    F    + +D +EEL 
Sbjct: 296  GYTWLELTPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHRKWGHFDLPNV-EDSREELL 354

Query: 517  NKKLDPFGLNLQSGNISDKQPYLHLHCKEMILPDISVAAQRAKSPTDFDIEDLESIKFDA 338
            N++  PFGLNL  G+IS+  P LHLHCK+M+LP+IS A Q  +S +  D+  +E ++  A
Sbjct: 355  NEEKLPFGLNLNKGSISENHPRLHLHCKQMVLPNISQALQNVQSASSCDLSLVEELELVA 414

Query: 337  PLPSHMQKSWDL 302
             LP +MQ+SWD+
Sbjct: 415  DLPPYMQRSWDV 426


>ref|XP_003516775.1| PREDICTED: RNA pseudouridine synthase 4, mitochondrial-like isoform
            X1 [Glycine max]
          Length = 427

 Score =  366 bits (939), Expect = 1e-98
 Identities = 180/312 (57%), Positives = 234/312 (75%), Gaps = 3/312 (0%)
 Frame = -1

Query: 1228 SVQGKAKVTYSE---EEMKFLHSLILYKDPAVVVINKPPGMPVQGGIGVKRSLDELAAAY 1058
            SV+ K   T+S    +++ F+ +L++YKDPA++V+NKPPGMPVQGGI +KRSLD +AAA 
Sbjct: 115  SVKVKQTPTHSHLTPQQINFIRTLVIYKDPAILVLNKPPGMPVQGGINIKRSLDAVAAAS 174

Query: 1057 LRCNDSEFPRLVHRLDRDCSGVLVMGRTQLSASVLHTIFREKTCEASKHDLEQRREIIQK 878
            L    S+ PRLVHRLDRDCSG+LVMGRT  S +VLH+IFREKT  AS  D+ + + I+Q+
Sbjct: 175  LNYGYSQPPRLVHRLDRDCSGILVMGRTHTSTTVLHSIFREKTSRASD-DIGKEKRILQR 233

Query: 877  TYWALVIGSPRRSKGLISVPLQKVVMDNGKFERITVADNAQSSLAQSAITEYRIIGSPCC 698
             YWALV+G PRR KGL++  L KVV+DNG+ +RIT+ DN+    +Q AITEYR+I S   
Sbjct: 234  RYWALVLGCPRRPKGLVTASLGKVVVDNGRSDRITIVDNSTLMSSQHAITEYRVIASSSQ 293

Query: 697  GYTWLELSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQVHKNLEPFPCSGLSQDPQEELT 518
            GYTWLEL+PLTGRKHQLRVHCAEVLGTPIVGDYKYGWQ H+    F    + +D +EEL 
Sbjct: 294  GYTWLELTPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHRKWGHFDLPNV-EDSREELL 352

Query: 517  NKKLDPFGLNLQSGNISDKQPYLHLHCKEMILPDISVAAQRAKSPTDFDIEDLESIKFDA 338
            N++  PFGLNL  G+IS+  P LHLHCK+M+LP+IS A Q  +S +  D+  +E ++  A
Sbjct: 353  NEEKLPFGLNLNKGSISENHPRLHLHCKQMVLPNISQALQNVQSASSCDLSLVEELELVA 412

Query: 337  PLPSHMQKSWDL 302
             LP +MQ+SWD+
Sbjct: 413  DLPPYMQRSWDV 424