BLASTX nr result
ID: Catharanthus22_contig00014626
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus22_contig00014626
(1314 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAN77900.1| hypothetical protein VITISV_037350 [Vitis vinifera] 132 9e-38
gb|ABI96971.1| putative gag-pol polyprotein [Triticum monococcum... 121 4e-35
emb|CAN80356.1| hypothetical protein VITISV_003506 [Vitis vinifera] 121 4e-35
emb|CAN78587.1| hypothetical protein VITISV_043910 [Vitis vinifera] 126 5e-35
gb|AAP43914.1| integrase [Gossypium raimondii] 125 5e-35
gb|AAF79348.1|AC007887_7 F15O4.13 [Arabidopsis thaliana] 116 1e-34
emb|CAN80130.1| hypothetical protein VITISV_001989 [Vitis vinifera] 118 7e-34
gb|AAW28578.1| Putative gag-pol polyprotein, identical [Solanum ... 117 9e-34
gb|ABF97027.1| retrotransposon protein, putative, Ty3-gypsy subc... 117 1e-33
emb|CAN84067.1| hypothetical protein VITISV_041979 [Vitis vinifera] 120 2e-33
gb|AAW28577.1| Putative gag-pol polyprotein, identical [Solanum ... 115 2e-33
gb|AAK94516.1| gag-pol polyprotein [Hordeum vulgare] 115 6e-33
gb|AAK94517.1| gag-pol polyprotein [Hordeum vulgare] 115 6e-33
emb|CAN81775.1| hypothetical protein VITISV_020071 [Vitis vinifera] 122 6e-33
emb|CAN81776.1| hypothetical protein VITISV_020072 [Vitis vinifera] 122 6e-33
gb|AAQ56388.1| putative gag-pol polyprotein [Oryza sativa Japoni... 114 1e-32
gb|AAK91332.1|AC090441_14 Putative gag-pol polyprotein [Oryza sa... 114 2e-32
gb|AAP43919.1| integrase [Gossypium hirsutum] 117 2e-32
ref|XP_006366953.1| PREDICTED: uncharacterized protein LOC102594... 110 6e-32
gb|AAQ56407.1| putative gag-pol polyprotein [Oryza sativa Japoni... 112 1e-31
>emb|CAN77900.1| hypothetical protein VITISV_037350 [Vitis vinifera]
Length = 1173
Score = 132 bits (333), Expect(2) = 9e-38
Identities = 69/153 (45%), Positives = 93/153 (60%)
Frame = +1
Query: 133 TL*AQ*LSVKTFKELYVSDNEFKDITDACLVVHNDEYLRHDGFLYHVGKLCIPSCYYKFL 312
TL A+ L + KELY +D++F + AC V ++ R DG+L+ +LC+P+ + L
Sbjct: 728 TLNAKLLGFEYVKELYANDDDFASVYGACEKVAFGKFYRLDGYLFRENRLCVPNSSMREL 787
Query: 313 LAKEAHSSGLMDCFNVSKTCVILHEHFFWLGMKRDVERFIYSCLEYKRANSTTLPYGLYI 492
L +EAH GLM F V KT +LHEH FW MKRDVER C+ Y+ A S LP+GLY
Sbjct: 788 LVREAHEGGLMGHFGVRKTLDVLHEHIFWPKMKRDVERACARCITYRHAKSKVLPHGLYT 847
Query: 493 LLNVPRESCVEISIEFIF*LLRFLKGRTFLFVV 591
L VP V+IS++F+ LLR GR +FVV
Sbjct: 848 TLLVPSAPWVDISMDFVLGLLRSRNGRDSIFVV 880
Score = 52.8 bits (125), Expect(2) = 9e-38
Identities = 22/41 (53%), Positives = 34/41 (82%)
Frame = +3
Query: 6 KLNKRYVRGMKFIKTFPYVNWNKRGKENVIANALSKRYILI 128
KLN+R+ + ++FI+TFPYV K+GKEN++ +ALS+RY L+
Sbjct: 686 KLNRRHAKWVEFIETFPYVIKYKQGKENIVVDALSRRYALV 726
Score = 75.9 bits (185), Expect(2) = 2e-16
Identities = 48/120 (40%), Positives = 67/120 (55%)
Frame = +1
Query: 445 EYKRANSTTLPYGLYILLNVPRESCVEISIEFIF*LLRFLKGRTFLFVVAYVDEILIDSK 624
E+K A T YGLY L +P F+ + L+ FVV Y D+IL+ SK
Sbjct: 505 EWKTAFKTK--YGLYEWLVMPF-GLTNAPSTFMRLMNHALRVFISRFVVVYFDDILVYSK 561
Query: 625 SNAYHLHHFNRVLSILRNVKLYANLGNYEFCVENGTFLGYVVSFQGFQVGANVVQAIKDW 804
+ H++H + VL +LR KLYANL FC++ FLGYVVS +G +V V++IK+W
Sbjct: 562 NLDEHINHLHCVLXVLRKEKLYANLKKCSFCMDKVVFLGYVVSAKGIEVDEENVKSIKEW 621
Score = 38.1 bits (87), Expect(2) = 2e-16
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +2
Query: 857 FYKKFIKDLSIIASPLVNVPKKMTGFTW 940
FY++F+KD S + +PL + KK GF W
Sbjct: 639 FYRRFVKDFSTLVAPLTEIVKKFVGFKW 666
>gb|ABI96971.1| putative gag-pol polyprotein [Triticum monococcum subsp.
aegilopoides]
Length = 1704
Score = 121 bits (303), Expect(2) = 4e-35
Identities = 65/146 (44%), Positives = 89/146 (60%), Gaps = 1/146 (0%)
Frame = +1
Query: 157 VKTFKELYVSDNEFKDITDACLVVHN-DEYLRHDGFLYHVGKLCIPSCYYKFLLAKEAHS 333
++T K+ YV D EFKD+ C ++++ +DGF++ KLCIP+ + LL +EAH
Sbjct: 1187 LETIKDQYVHDAEFKDVLQNCKEGRTWNKFVLNDGFVFRANKLCIPASSVRLLLLQEAHG 1246
Query: 334 SGLMDCFNVSKTCVILHEHFFWLGMKRDVERFIYSCLEYKRANSTTLPYGLYILLNVPRE 513
GLM F V KT IL HFFW M+RDVERF+ C +RA S P+GLY+ L VP
Sbjct: 1247 GGLMGHFGVKKTEDILATHFFWPKMRRDVERFVARCTTCQRAKSRLNPHGLYMPLPVPSV 1306
Query: 514 SCVEISIEFIF*LLRFLKGRTFLFVV 591
+IS++F+ L R KGR +FVV
Sbjct: 1307 PWEDISMDFVLGLPRTKKGRDSIFVV 1332
Score = 55.5 bits (132), Expect(2) = 4e-35
Identities = 24/41 (58%), Positives = 36/41 (87%)
Frame = +3
Query: 6 KLNKRYVRGMKFIKTFPYVNWNKRGKENVIANALSKRYILI 128
KLN+R+ + ++FI+TFPYV +K+GKENVIA+ALS+RY ++
Sbjct: 1137 KLNRRHAKWVEFIETFPYVIKHKKGKENVIADALSRRYTML 1177
Score = 72.8 bits (177), Expect(2) = 1e-14
Identities = 39/85 (45%), Positives = 51/85 (60%)
Frame = +1
Query: 550 LLRFLKGRTFLFVVAYVDEILIDSKSNAYHLHHFNRVLSILRNVKLYANLGNYEFCVENG 729
+LR GR FVV Y D+ILI SKS HL H V LR+ +L+ NLG FC +
Sbjct: 902 VLRAFIGR---FVVVYFDDILIYSKSLEEHLEHLRAVFIALRDARLFGNLGKCTFCTDRV 958
Query: 730 TFLGYVVSFQGFQVGANVVQAIKDW 804
+FLGYVV+ QG +V ++AI+ W
Sbjct: 959 SFLGYVVTPQGIEVDKAKIEAIESW 983
Score = 35.0 bits (79), Expect(2) = 1e-14
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = +2
Query: 857 FYKKFIKDLSIIASPLVNVPKKMTGFTW 940
FY++F++D S IA+PL V KK F W
Sbjct: 1001 FYRRFVRDFSTIAAPLNEVTKKDVPFVW 1028
>emb|CAN80356.1| hypothetical protein VITISV_003506 [Vitis vinifera]
Length = 960
Score = 121 bits (303), Expect(2) = 4e-35
Identities = 66/153 (43%), Positives = 90/153 (58%)
Frame = +1
Query: 133 TL*AQ*LSVKTFKELYVSDNEFKDITDACLVVHNDEYLRHDGFLYHVGKLCIPSCYYKFL 312
TL A+ L + KELY +DN+F + AC ++ R DG+L+ +LC+P+ L
Sbjct: 589 TLNAKLLGFEYVKELYANDNDFASLYGACEKAAFGKFYRLDGYLFRENRLCVPNSSMCEL 648
Query: 313 LAKEAHSSGLMDCFNVSKTCVILHEHFFWLGMKRDVERFIYSCLEYKRANSTTLPYGLYI 492
L EAH GLM F V +T +L+EHFFW MKRDVER C+ Y++A S LP+ LY
Sbjct: 649 LVHEAHGGGLMGHFGVRRTLDVLYEHFFWPKMKRDVERACARCITYRQAKSRVLPHRLYT 708
Query: 493 LLNVPRESCVEISIEFIF*LLRFLKGRTFLFVV 591
L V S V+IS++F+ L R GR +FVV
Sbjct: 709 PLLVSSASWVDISMDFVLGLPRSRNGRDSIFVV 741
Score = 55.5 bits (132), Expect(2) = 4e-35
Identities = 23/42 (54%), Positives = 35/42 (83%)
Frame = +3
Query: 3 EKLNKRYVRGMKFIKTFPYVNWNKRGKENVIANALSKRYILI 128
+KLN+R+ + ++FI+TFPYV K+GKEN++ NALS+RY L+
Sbjct: 546 DKLNRRHAKWVEFIETFPYVVKYKQGKENIVVNALSRRYALV 587
Score = 82.4 bits (202), Expect(2) = 3e-18
Identities = 53/127 (41%), Positives = 74/127 (58%), Gaps = 2/127 (1%)
Frame = +1
Query: 445 EYKRANSTTLPYGLYILLNVP--RESCVEISIEFIF*LLRFLKGRTFLFVVAYVDEILID 618
E+K A T YGLY L +P + + + + +LR GR FVV Y D+IL+
Sbjct: 303 EWKTAFKTK--YGLYEWLVMPFGLTNALSTFMRLMNHVLRAFIGR---FVVVYFDDILVY 357
Query: 619 SKSNAYHLHHFNRVLSILRNVKLYANLGNYEFCVENGTFLGYVVSFQGFQVGANVVQAIK 798
SK+ H++H + VL+ILR KLYANL FC++ FLGYVVS +G +V ++AIK
Sbjct: 358 SKNLDEHINHLHCVLAILRKEKLYANLKKCSFCMDKVVFLGYVVSAKGIEVDEEKLKAIK 417
Query: 799 DWLISKS 819
+W KS
Sbjct: 418 EWPTPKS 424
Score = 37.4 bits (85), Expect(2) = 3e-18
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = +2
Query: 857 FYKKFIKDLSIIASPLVNVPKKMTGFTW 940
FY +F+KD S +A+PL + KK GF W
Sbjct: 437 FYFRFVKDFSTLAAPLTEIVKKSVGFKW 464
>emb|CAN78587.1| hypothetical protein VITISV_043910 [Vitis vinifera]
Length = 565
Score = 126 bits (316), Expect(2) = 5e-35
Identities = 66/150 (44%), Positives = 89/150 (59%)
Frame = +1
Query: 142 AQ*LSVKTFKELYVSDNEFKDITDACLVVHNDEYLRHDGFLYHVGKLCIPSCYYKFLLAK 321
A+ L + KE Y D+ F + AC D++ RH+GFL+ KLC+P C + LL +
Sbjct: 344 AKLLDFEHIKESYPLDHNFCEDFRACEKNAVDKFFRHEGFLFRENKLCVPKCSSRELLVR 403
Query: 322 EAHSSGLMDCFNVSKTCVILHEHFFWLGMKRDVERFIYSCLEYKRANSTTLPYGLYILLN 501
E+H GLM F VSKT IL EHF+W MKRDVER C+ ++A S P+GLY L
Sbjct: 404 ESHGEGLMGDFGVSKTLAILQEHFYWSHMKRDVERICGRCVTCRQAKSRVQPHGLYXPLX 463
Query: 502 VPRESCVEISIEFIF*LLRFLKGRTFLFVV 591
+P E ++ISI+F+ L R GR +FVV
Sbjct: 464 IPSEPWIDISIDFVLGLPRSKCGRDSIFVV 493
Score = 50.1 bits (118), Expect(2) = 5e-35
Identities = 24/41 (58%), Positives = 32/41 (78%)
Frame = +3
Query: 6 KLNKRYVRGMKFIKTFPYVNWNKRGKENVIANALSKRYILI 128
KLN R+ R ++F+ TFPYV K+GKEN+I +ALS+ YILI
Sbjct: 299 KLNMRHARWVEFMGTFPYVIRYKQGKENIIVDALSRIYILI 339
>gb|AAP43914.1| integrase [Gossypium raimondii]
Length = 340
Score = 125 bits (313), Expect(2) = 5e-35
Identities = 63/153 (41%), Positives = 93/153 (60%)
Frame = +1
Query: 133 TL*AQ*LSVKTFKELYVSDNEFKDITDACLVVHNDEYLRHDGFLYHVGKLCIPSCYYKFL 312
TL + L + K+LY +D++F I DAC ++ +HDG+L+ +LC+P C + L
Sbjct: 106 TLHTKLLGFEYLKDLYATDSDFASIYDACEHGAFHKFYKHDGYLFQNNRLCLPKCSMREL 165
Query: 313 LAKEAHSSGLMDCFNVSKTCVILHEHFFWLGMKRDVERFIYSCLEYKRANSTTLPYGLYI 492
L +EAHS GLM F V+KT +LHEHF+W M++ VE+ +C+ K+ ST +P+GLY
Sbjct: 166 LVREAHSGGLMGHFGVTKTYDVLHEHFYWPNMRKLVEKICSTCITCKQDKSTVMPHGLYT 225
Query: 493 LLNVPRESCVEISIEFIF*LLRFLKGRTFLFVV 591
L VP +ISI+F+ L GR +FVV
Sbjct: 226 PLPVPSSPWTDISIDFVIGLPITKHGRDSIFVV 258
Score = 51.2 bits (121), Expect(2) = 5e-35
Identities = 22/41 (53%), Positives = 34/41 (82%)
Frame = +3
Query: 6 KLNKRYVRGMKFIKTFPYVNWNKRGKENVIANALSKRYILI 128
KLNKR+ R ++FI++FPY K+GK+N++A+ALS+RY L+
Sbjct: 64 KLNKRHARWVEFIESFPYGIRYKKGKDNIVADALSRRYTLL 104
>gb|AAF79348.1|AC007887_7 F15O4.13 [Arabidopsis thaliana]
Length = 1887
Score = 116 bits (291), Expect(2) = 1e-34
Identities = 61/153 (39%), Positives = 90/153 (58%)
Frame = +1
Query: 133 TL*AQ*LSVKTFKELYVSDNEFKDITDACLVVHNDEYLRHDGFLYHVGKLCIPSCYYKFL 312
+L A+ L + K LY +D++F+ I +C +Y RHDGFL++ +LCIP+ + L
Sbjct: 1327 SLDAKLLGFEHIKSLYANDSDFEKIYSSCEKFAFGKYYRHDGFLFYDNRLCIPNSSLREL 1386
Query: 313 LAKEAHSSGLMDCFNVSKTCVILHEHFFWLGMKRDVERFIYSCLEYKRANSTTLPYGLYI 492
+EAH GLM F VSKT ++ +HF W MKRDVER C K+A + + P+GLY
Sbjct: 1387 FIREAHGGGLMGHFGVSKTIKVMQDHFHWPHMKRDVERICERCPTCKQAKAKSQPHGLYT 1446
Query: 493 LLNVPRESCVEISIEFIF*LLRFLKGRTFLFVV 591
L +P +IS++F+ L R G+ +FVV
Sbjct: 1447 PLPIPSHPWNDISMDFVVGLPRTRTGKDSIFVV 1479
Score = 58.2 bits (139), Expect(2) = 1e-34
Identities = 25/42 (59%), Positives = 37/42 (88%)
Frame = +3
Query: 3 EKLNKRYVRGMKFIKTFPYVNWNKRGKENVIANALSKRYILI 128
+KLNKR+ R ++FI+TFPYV K+GK+NV+A+ALS+RY+L+
Sbjct: 1284 QKLNKRHARWVEFIETFPYVIKYKKGKDNVVADALSRRYVLL 1325
Score = 72.4 bits (176), Expect(2) = 4e-16
Identities = 41/90 (45%), Positives = 53/90 (58%)
Frame = +1
Query: 550 LLRFLKGRTFLFVVAYVDEILIDSKSNAYHLHHFNRVLSILRNVKLYANLGNYEFCVENG 729
+LR GR FV+ Y D+IL+ SKS H+ H VL +LR KLYANL F +N
Sbjct: 1050 VLRAFIGR---FVIVYFDDILVYSKSLEEHVEHLKMVLEVLRKEKLYANLKKCTFGTDNL 1106
Query: 730 TFLGYVVSFQGFQVGANVVQAIKDWLISKS 819
FLG+VVS G +V V+AI++W KS
Sbjct: 1107 VFLGFVVSTDGVKVDEEKVKAIREWPSPKS 1136
Score = 40.4 bits (93), Expect(2) = 4e-16
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 7/62 (11%)
Frame = +2
Query: 833 GKLLWFHK---FYKKFIKDLSIIASPLVNVPKKMTGFTW----QICFHLIKFSNQVHHSP 991
G++ FH FY++F+KD S +A+PL V KK GF W + F +K ++ H+P
Sbjct: 1138 GEVRSFHGLAGFYRRFVKDFSTLAAPLTEVIKKNVGFKWEQAQEDAFQALK--EKLTHAP 1195
Query: 992 TL 997
L
Sbjct: 1196 VL 1197
>emb|CAN80130.1| hypothetical protein VITISV_001989 [Vitis vinifera]
Length = 340
Score = 118 bits (295), Expect(2) = 7e-34
Identities = 62/142 (43%), Positives = 86/142 (60%)
Frame = +1
Query: 133 TL*AQ*LSVKTFKELYVSDNEFKDITDACLVVHNDEYLRHDGFLYHVGKLCIPSCYYKFL 312
TL A+ L + KELYV+D++F + AC ++ RH G+L+ +L +P+ + L
Sbjct: 108 TLNAKLLGFEYVKELYVNDDDFASVYGACEKTTFGKFYRHLGYLFRENRLRVPNSFMNDL 167
Query: 313 LAKEAHSSGLMDCFNVSKTCVILHEHFFWLGMKRDVERFIYSCLEYKRANSTTLPYGLYI 492
L +EAH GLM F V KT +LHEHFFW MKRDVER C+ ++A S LP+GLY
Sbjct: 168 LVREAHGGGLMGHFGVRKTLDVLHEHFFWPKMKRDVERACARCITCRQAKSRVLPHGLYT 227
Query: 493 LLNVPRESCVEISIEFIF*LLR 558
L VP V+IS++F+ L R
Sbjct: 228 PLPVPSAPWVDISMDFVLGLPR 249
Score = 54.3 bits (129), Expect(2) = 7e-34
Identities = 23/41 (56%), Positives = 35/41 (85%)
Frame = +3
Query: 6 KLNKRYVRGMKFIKTFPYVNWNKRGKENVIANALSKRYILI 128
KLN+R+ + ++FI+TFPYV K+GKEN++A+ALS+RY L+
Sbjct: 66 KLNRRHAKWVEFIETFPYVIKYKQGKENIVADALSRRYALV 106
>gb|AAW28578.1| Putative gag-pol polyprotein, identical [Solanum demissum]
Length = 1588
Score = 117 bits (292), Expect(2) = 9e-34
Identities = 63/153 (41%), Positives = 90/153 (58%)
Frame = +1
Query: 133 TL*AQ*LSVKTFKELYVSDNEFKDITDACLVVHNDEYLRHDGFLYHVGKLCIPSCYYKFL 312
TL ++ L K LY +D++F +I C + +++ D FL+ KLC+P+C + L
Sbjct: 1089 TLTSKLLGFDQIKFLYANDSDFGEIFAECKLGPFEKFNLQDEFLFKENKLCVPNCSLREL 1148
Query: 313 LAKEAHSSGLMDCFNVSKTCVILHEHFFWLGMKRDVERFIYSCLEYKRANSTTLPYGLYI 492
+EAH GLM F V KT IL EHF+W M++DVE+ CLE K+A S TLP+GLY
Sbjct: 1149 FVREAHCGGLMGHFGVPKTLEILSEHFYWPSMRKDVEKVCSYCLECKQAKSRTLPHGLYT 1208
Query: 493 LLNVPRESCVEISIEFIF*LLRFLKGRTFLFVV 591
L V ++IS++FI L R G+ +FVV
Sbjct: 1209 PLPVSNSPWIDISMDFILGLPRTKYGKDSIFVV 1241
Score = 55.1 bits (131), Expect(2) = 9e-34
Identities = 25/48 (52%), Positives = 38/48 (79%)
Frame = +3
Query: 6 KLNKRYVRGMKFIKTFPYVNWNKRGKENVIANALSKRYILIFYFISSM 149
KL++R+ + ++FI+TFPYV K+GKENV+A+ALS+RY+LI S +
Sbjct: 1047 KLSRRHAKWVEFIETFPYVIAYKQGKENVVADALSRRYVLISTLTSKL 1094
Score = 73.9 bits (180), Expect(2) = 2e-15
Identities = 46/120 (38%), Positives = 64/120 (53%)
Frame = +1
Query: 445 EYKRANSTTLPYGLYILLNVPRESCVEISIEFIF*LLRFLKGRTFLFVVAYVDEILIDSK 624
E+K A T YGLY L +P F+ + K F+V Y D+ILI S+
Sbjct: 806 EWKTAFKTK--YGLYEWLVMPF-GLTNAPSTFMRLMNHVFKDFHGKFIVVYFDDILIFSQ 862
Query: 625 SNAYHLHHFNRVLSILRNVKLYANLGNYEFCVENGTFLGYVVSFQGFQVGANVVQAIKDW 804
+ HL H +V +LRN +L+ANL FCV+ FLG+VVS G +V ++AIK+W
Sbjct: 863 NLDEHLEHLKKVFEVLRNQRLFANLKKCTFCVDRVVFLGFVVSSMGVEVDDEKIKAIKEW 922
Score = 36.6 bits (83), Expect(2) = 2e-15
Identities = 15/28 (53%), Positives = 20/28 (71%)
Frame = +2
Query: 857 FYKKFIKDLSIIASPLVNVPKKMTGFTW 940
FY++F++D S IA+PL V KK FTW
Sbjct: 940 FYRRFVRDFSTIAAPLTEVIKKDKVFTW 967
>gb|ABF97027.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 889
Score = 117 bits (294), Expect(2) = 1e-33
Identities = 62/146 (42%), Positives = 90/146 (61%), Gaps = 1/146 (0%)
Frame = +1
Query: 157 VKTFKELYVSDNEFKDITDACLVVHN-DEYLRHDGFLYHVGKLCIPSCYYKFLLAKEAHS 333
++T KE Y D++FKD+ C+ ++++ +GF++ KLCIP+ + LL +EAH
Sbjct: 484 LETIKEQYAHDDDFKDVLLNCMEGRTWNKFVLTNGFVFRANKLCIPASSVRMLLLQEAHG 543
Query: 334 SGLMDCFNVSKTCVILHEHFFWLGMKRDVERFIYSCLEYKRANSTTLPYGLYILLNVPRE 513
GLM F V KT IL +HFFW M+RDVERF+ C ++A S P+GLY+ L VP
Sbjct: 544 GGLMGHFGVKKTEDILADHFFWPKMRRDVERFVARCTTCQKAKSRLNPHGLYMPLPVPSV 603
Query: 514 SCVEISIEFIF*LLRFLKGRTFLFVV 591
+IS++F+ L R KGR +FVV
Sbjct: 604 PWEDISMDFVLGLPRTKKGRDSIFVV 629
Score = 53.9 bits (128), Expect(2) = 1e-33
Identities = 23/41 (56%), Positives = 36/41 (87%)
Frame = +3
Query: 6 KLNKRYVRGMKFIKTFPYVNWNKRGKENVIANALSKRYILI 128
KLN+R+ + ++FI++FPYV +K+GKENVIA+ALS+RY ++
Sbjct: 434 KLNRRHAKWVEFIESFPYVIKHKKGKENVIADALSRRYAML 474
Score = 65.9 bits (159), Expect(2) = 1e-12
Identities = 46/122 (37%), Positives = 63/122 (51%), Gaps = 2/122 (1%)
Frame = +1
Query: 445 EYKRANSTTLPYGLYILLNVP--RESCVEISIEFIF*LLRFLKGRTFLFVVAYVDEILID 618
E+K A T +GLY L +P + + + +LR GR FVV Y D+ILI
Sbjct: 164 EWKTAFKTK--FGLYEWLVMPFGLTNAPSTFMRLMNEVLRAFIGR---FVVVYFDDILIY 218
Query: 619 SKSNAYHLHHFNRVLSILRNVKLYANLGNYEFCVENGTFLGYVVSFQGFQVGANVVQAIK 798
S+S H H V LR+ +L+ NL FC + +FLGYVV+ QG +V V+AI
Sbjct: 219 SRSIEDHHGHLRAVFDALRDARLFGNLEKCTFCTDRVSFLGYVVTPQGIEVDQAKVEAIH 278
Query: 799 DW 804
W
Sbjct: 279 SW 280
Score = 35.4 bits (80), Expect(2) = 1e-12
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 4/51 (7%)
Frame = +2
Query: 857 FYKKFIKDLSIIASPLVNVPKKMTGFTW----QICFHLIKFSNQVHHSPTL 997
FY+ F+KD S IA+PL + K+ FTW + F +K +++ H+P L
Sbjct: 298 FYRHFVKDFSTIAAPLHELTKRNVTFTWAAAQRNAFDTLK--DKLTHAPLL 346
>emb|CAN84067.1| hypothetical protein VITISV_041979 [Vitis vinifera]
Length = 364
Score = 120 bits (301), Expect(2) = 2e-33
Identities = 66/153 (43%), Positives = 86/153 (56%)
Frame = +1
Query: 133 TL*AQ*LSVKTFKELYVSDNEFKDITDACLVVHNDEYLRHDGFLYHVGKLCIPSCYYKFL 312
TL A+ L + KELY +DN+F + AC ++ R DG+L+ LC+P+ L
Sbjct: 106 TLNAKLLGFEYVKELYANDNDFASVYGACEKTAFGKFYRLDGYLFRKNILCVPNSSMCEL 165
Query: 313 LAKEAHSSGLMDCFNVSKTCVILHEHFFWLGMKRDVERFIYSCLEYKRANSTTLPYGLYI 492
L +EAH M F V KT +LHEHFFW MKRDVER C+ +R S LP+GLY
Sbjct: 166 LVREAHGGDXMGHFGVRKTLDVLHEHFFWPKMKRDVERACARCITCRRTKSRVLPHGLYT 225
Query: 493 LLNVPRESCVEISIEFIF*LLRFLKGRTFLFVV 591
LL VP V I ++F+ L R GR +FVV
Sbjct: 226 LLPVPSAPWVNIYMDFVLGLPRSRNGRDSIFVV 258
Score = 50.8 bits (120), Expect(2) = 2e-33
Identities = 22/41 (53%), Positives = 34/41 (82%)
Frame = +3
Query: 6 KLNKRYVRGMKFIKTFPYVNWNKRGKENVIANALSKRYILI 128
KLN+R+ + ++FI+TFPYV K+ KEN++A+ALS+RY L+
Sbjct: 64 KLNRRHAKWVEFIETFPYVIKYKQCKENIVADALSRRYALV 104
>gb|AAW28577.1| Putative gag-pol polyprotein, identical [Solanum demissum]
Length = 1588
Score = 115 bits (289), Expect(2) = 2e-33
Identities = 63/153 (41%), Positives = 90/153 (58%)
Frame = +1
Query: 133 TL*AQ*LSVKTFKELYVSDNEFKDITDACLVVHNDEYLRHDGFLYHVGKLCIPSCYYKFL 312
TL ++ L K LY +D++F +I C + +++ D FL+ KLC+P+C + L
Sbjct: 1089 TLTSKLLGFDQIKFLYANDSDFGEIFAECKLGPFEKFNLQDEFLFKENKLCVPNCSLREL 1148
Query: 313 LAKEAHSSGLMDCFNVSKTCVILHEHFFWLGMKRDVERFIYSCLEYKRANSTTLPYGLYI 492
+EAH GLM F V KT IL EHF+W M++DVE+ CLE K+A S TLP+GLY
Sbjct: 1149 FVREAHCGGLMGHFGVPKTLEILSEHFYWPSMRKDVEKVCSYCLECKQAKSRTLPHGLYT 1208
Query: 493 LLNVPRESCVEISIEFIF*LLRFLKGRTFLFVV 591
L V ++IS++FI L R G+ +FVV
Sbjct: 1209 PLPVSNFPWIDISMDFILGLPRTKYGKDSIFVV 1241
Score = 55.1 bits (131), Expect(2) = 2e-33
Identities = 25/48 (52%), Positives = 38/48 (79%)
Frame = +3
Query: 6 KLNKRYVRGMKFIKTFPYVNWNKRGKENVIANALSKRYILIFYFISSM 149
KL++R+ + ++FI+TFPYV K+GKENV+A+ALS+RY+LI S +
Sbjct: 1047 KLSRRHAKWVEFIETFPYVIAYKQGKENVVADALSRRYVLISTLTSKL 1094
Score = 73.9 bits (180), Expect(2) = 2e-15
Identities = 46/120 (38%), Positives = 64/120 (53%)
Frame = +1
Query: 445 EYKRANSTTLPYGLYILLNVPRESCVEISIEFIF*LLRFLKGRTFLFVVAYVDEILIDSK 624
E+K A T YGLY L +P F+ + K F+V Y D+ILI S+
Sbjct: 806 EWKTAFKTK--YGLYEWLVMPF-GLTNAPSTFMRLMNHVFKDFHGKFIVVYFDDILIFSQ 862
Query: 625 SNAYHLHHFNRVLSILRNVKLYANLGNYEFCVENGTFLGYVVSFQGFQVGANVVQAIKDW 804
+ HL H +V +LRN +L+ANL FCV+ FLG+VVS G +V ++AIK+W
Sbjct: 863 NLDEHLEHLKKVFEVLRNQRLFANLKKCTFCVDRVVFLGFVVSSMGVEVDDEKIKAIKEW 922
Score = 36.6 bits (83), Expect(2) = 2e-15
Identities = 15/28 (53%), Positives = 20/28 (71%)
Frame = +2
Query: 857 FYKKFIKDLSIIASPLVNVPKKMTGFTW 940
FY++F++D S IA+PL V KK FTW
Sbjct: 940 FYRRFVRDFSTIAAPLTEVIKKDKVFTW 967
>gb|AAK94516.1| gag-pol polyprotein [Hordeum vulgare]
Length = 1720
Score = 115 bits (287), Expect(2) = 6e-33
Identities = 60/146 (41%), Positives = 89/146 (60%), Gaps = 1/146 (0%)
Frame = +1
Query: 157 VKTFKELYVSDNEFKDITDACLVVHN-DEYLRHDGFLYHVGKLCIPSCYYKFLLAKEAHS 333
++T K+ YV D +FKD+ + C ++++ ++GF++ KLCIP+ + LL +EAH
Sbjct: 1202 LETIKDQYVHDADFKDVLENCREGRTWNKFIINNGFVFRANKLCIPASSIRLLLLQEAHG 1261
Query: 334 SGLMDCFNVSKTCVILHEHFFWLGMKRDVERFIYSCLEYKRANSTTLPYGLYILLNVPRE 513
GLM F V K +L HFFW M+RDVERF+ C ++A S P+GLY+ L VP
Sbjct: 1262 GGLMGHFGVKKMEDVLATHFFWPRMRRDVERFVARCTTCQKAKSRLNPHGLYMPLPVPSV 1321
Query: 514 SCVEISIEFIF*LLRFLKGRTFLFVV 591
+IS++F+ L R KGR +FVV
Sbjct: 1322 PWEDISMDFVLGLPRTKKGRDSIFVV 1347
Score = 54.3 bits (129), Expect(2) = 6e-33
Identities = 23/41 (56%), Positives = 36/41 (87%)
Frame = +3
Query: 6 KLNKRYVRGMKFIKTFPYVNWNKRGKENVIANALSKRYILI 128
KLN+R+ + ++FI+TFPYV +K+GK+NVIA+ALS+RY ++
Sbjct: 1152 KLNRRHAKWVEFIETFPYVIKHKKGKDNVIADALSRRYTML 1192
Score = 72.8 bits (177), Expect(2) = 2e-14
Identities = 47/122 (38%), Positives = 67/122 (54%), Gaps = 2/122 (1%)
Frame = +1
Query: 445 EYKRANSTTLPYGLYILLNVP--RESCVEISIEFIF*LLRFLKGRTFLFVVAYVDEILID 618
E+K A T +GLY L +P + + + +LR GR FVV Y D+ILI
Sbjct: 882 EWKTAFKTK--FGLYEWLVMPFGLTNAPSTFMRLMNEVLRAFIGR---FVVVYFDDILIY 936
Query: 619 SKSNAYHLHHFNRVLSILRNVKLYANLGNYEFCVENGTFLGYVVSFQGFQVGANVVQAIK 798
S+S HL H V + LR+ +L+ NLG FC + +FLGYVV+ QG +V ++AI+
Sbjct: 937 SRSLEDHLDHLRAVFTALRDARLFGNLGKCTFCTDRVSFLGYVVTPQGIEVDKAKIEAIE 996
Query: 799 DW 804
W
Sbjct: 997 SW 998
Score = 34.3 bits (77), Expect(2) = 2e-14
Identities = 17/51 (33%), Positives = 32/51 (62%), Gaps = 4/51 (7%)
Frame = +2
Query: 857 FYKKFIKDLSIIASPLVNVPKKMTGFTW----QICFHLIKFSNQVHHSPTL 997
FY++F++D S IA+PL + KK ++W + F ++K +++ H+P L
Sbjct: 1016 FYRRFVRDFSTIAAPLNELTKKDVPYSWGTAQEEAFTVLK--DKLTHAPLL 1064
>gb|AAK94517.1| gag-pol polyprotein [Hordeum vulgare]
Length = 1717
Score = 115 bits (287), Expect(2) = 6e-33
Identities = 60/146 (41%), Positives = 89/146 (60%), Gaps = 1/146 (0%)
Frame = +1
Query: 157 VKTFKELYVSDNEFKDITDACLVVHN-DEYLRHDGFLYHVGKLCIPSCYYKFLLAKEAHS 333
++T K+ YV D +FKD+ + C ++++ ++GF++ KLCIP+ + LL +EAH
Sbjct: 1199 LETIKDQYVHDADFKDVLENCREGRTWNKFIINNGFVFRANKLCIPASSIRLLLLQEAHG 1258
Query: 334 SGLMDCFNVSKTCVILHEHFFWLGMKRDVERFIYSCLEYKRANSTTLPYGLYILLNVPRE 513
GLM F V K +L HFFW M+RDVERF+ C ++A S P+GLY+ L VP
Sbjct: 1259 GGLMGHFGVKKMEDVLATHFFWPRMRRDVERFVARCTTCQKAKSRLNPHGLYMPLPVPSV 1318
Query: 514 SCVEISIEFIF*LLRFLKGRTFLFVV 591
+IS++F+ L R KGR +FVV
Sbjct: 1319 PWEDISMDFVLGLPRTKKGRDSIFVV 1344
Score = 54.3 bits (129), Expect(2) = 6e-33
Identities = 23/41 (56%), Positives = 36/41 (87%)
Frame = +3
Query: 6 KLNKRYVRGMKFIKTFPYVNWNKRGKENVIANALSKRYILI 128
KLN+R+ + ++FI+TFPYV +K+GK+NVIA+ALS+RY ++
Sbjct: 1149 KLNRRHAKWVEFIETFPYVIKDKKGKDNVIADALSRRYTML 1189
Score = 72.8 bits (177), Expect(2) = 2e-14
Identities = 47/122 (38%), Positives = 67/122 (54%), Gaps = 2/122 (1%)
Frame = +1
Query: 445 EYKRANSTTLPYGLYILLNVP--RESCVEISIEFIF*LLRFLKGRTFLFVVAYVDEILID 618
E+K A T +GLY L +P + + + +LR GR FVV Y D+ILI
Sbjct: 879 EWKTAFKTK--FGLYEWLVMPFGLTNAPSTFMRLMNEVLRAFIGR---FVVVYFDDILIY 933
Query: 619 SKSNAYHLHHFNRVLSILRNVKLYANLGNYEFCVENGTFLGYVVSFQGFQVGANVVQAIK 798
S+S HL H V + LR+ +L+ NLG FC + +FLGYVV+ QG +V ++AI+
Sbjct: 934 SRSLEDHLDHLRAVFTALRDARLFGNLGKCTFCTDRVSFLGYVVTPQGIEVDKAKIEAIE 993
Query: 799 DW 804
W
Sbjct: 994 SW 995
Score = 34.3 bits (77), Expect(2) = 2e-14
Identities = 17/51 (33%), Positives = 32/51 (62%), Gaps = 4/51 (7%)
Frame = +2
Query: 857 FYKKFIKDLSIIASPLVNVPKKMTGFTW----QICFHLIKFSNQVHHSPTL 997
FY++F++D S IA+PL + KK ++W + F ++K +++ H+P L
Sbjct: 1013 FYRRFVRDFSTIAAPLNELTKKDVPYSWGTAQEEAFTVLK--DKLTHAPLL 1061
>emb|CAN81775.1| hypothetical protein VITISV_020071 [Vitis vinifera]
Length = 1159
Score = 122 bits (306), Expect(2) = 6e-33
Identities = 65/153 (42%), Positives = 88/153 (57%)
Frame = +1
Query: 133 TL*AQ*LSVKTFKELYVSDNEFKDITDACLVVHNDEYLRHDGFLYHVGKLCIPSCYYKFL 312
TL A+ L + KELY +D++ + AC ++ R DG+L+ KLC+P+ L
Sbjct: 801 TLNAKLLGFEYVKELYANDDDLASVYGACEKAAFGKFYRLDGYLFRENKLCVPNSSMCEL 860
Query: 313 LAKEAHSSGLMDCFNVSKTCVILHEHFFWLGMKRDVERFIYSCLEYKRANSTTLPYGLYI 492
L +AH GLM F V KT +LHEHFFW MKRDVER C+ Y++ S LP+GLY
Sbjct: 861 LVCKAHGGGLMGHFGVRKTLEVLHEHFFWPKMKRDVERVCVRCITYRQTKSKVLPHGLYT 920
Query: 493 LLNVPRESCVEISIEFIF*LLRFLKGRTFLFVV 591
L VP +IS++F+ L R GR +FVV
Sbjct: 921 PLPVPSAPWFDISMDFVLGLPRSRNGRNSIFVV 953
Score = 47.0 bits (110), Expect(2) = 6e-33
Identities = 21/41 (51%), Positives = 32/41 (78%)
Frame = +3
Query: 6 KLNKRYVRGMKFIKTFPYVNWNKRGKENVIANALSKRYILI 128
KLN R+ + ++FI+TF YV K+GKEN++ +ALS+RY L+
Sbjct: 759 KLNIRHPKWVEFIETFSYVIKYKQGKENIVVDALSRRYALV 799
>emb|CAN81776.1| hypothetical protein VITISV_020072 [Vitis vinifera]
Length = 366
Score = 122 bits (306), Expect(2) = 6e-33
Identities = 65/153 (42%), Positives = 88/153 (57%)
Frame = +1
Query: 133 TL*AQ*LSVKTFKELYVSDNEFKDITDACLVVHNDEYLRHDGFLYHVGKLCIPSCYYKFL 312
TL A+ L + KELY +D++ + AC ++ R DG+L+ KLC+P+ L
Sbjct: 106 TLNAKLLGFEYVKELYANDDDLASVYGACEKAAFGKFYRLDGYLFRENKLCVPNSSMCEL 165
Query: 313 LAKEAHSSGLMDCFNVSKTCVILHEHFFWLGMKRDVERFIYSCLEYKRANSTTLPYGLYI 492
L +AH GLM F V KT +LHEHFFW MKRDVER C+ Y++ S LP+GLY
Sbjct: 166 LVCKAHGGGLMGHFGVRKTLEVLHEHFFWPKMKRDVERVCVRCITYRQTKSKVLPHGLYT 225
Query: 493 LLNVPRESCVEISIEFIF*LLRFLKGRTFLFVV 591
L VP +IS++F+ L R GR +FVV
Sbjct: 226 PLPVPSAPWFDISMDFVLGLPRSRNGRNSIFVV 258
Score = 47.0 bits (110), Expect(2) = 6e-33
Identities = 21/41 (51%), Positives = 32/41 (78%)
Frame = +3
Query: 6 KLNKRYVRGMKFIKTFPYVNWNKRGKENVIANALSKRYILI 128
KLN R+ + ++FI+TF YV K+GKEN++ +ALS+RY L+
Sbjct: 64 KLNIRHPKWVEFIETFSYVIKYKQGKENIVVDALSRRYALV 104
>gb|AAQ56388.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
gi|91795218|gb|ABE60890.1| putative polyprotein [Oryza
sativa Japonica Group]
Length = 1616
Score = 114 bits (285), Expect(2) = 1e-32
Identities = 61/146 (41%), Positives = 89/146 (60%), Gaps = 1/146 (0%)
Frame = +1
Query: 157 VKTFKELYVSDNEFKDITDACLVVHN-DEYLRHDGFLYHVGKLCIPSCYYKFLLAKEAHS 333
++T KE Y D++FK++ C ++++ +GF++ KLCIP+ + LL +EAH
Sbjct: 1171 LETIKEQYAHDDDFKNVLLNCKEGRTWNKFVLTNGFVFRANKLCIPASSVRMLLLQEAHG 1230
Query: 334 SGLMDCFNVSKTCVILHEHFFWLGMKRDVERFIYSCLEYKRANSTTLPYGLYILLNVPRE 513
GLM F V KT IL +HFFW M+RDVERF+ C ++A S P+GLY+ L VP
Sbjct: 1231 GGLMGHFGVKKTEDILADHFFWPKMRRDVERFVARCTTCQKAKSRLNPHGLYMPLPVPSV 1290
Query: 514 SCVEISIEFIF*LLRFLKGRTFLFVV 591
+IS++F+ L R KGR +FVV
Sbjct: 1291 PWEDISMDFVLGLPRTKKGRDSIFVV 1316
Score = 53.9 bits (128), Expect(2) = 1e-32
Identities = 23/41 (56%), Positives = 36/41 (87%)
Frame = +3
Query: 6 KLNKRYVRGMKFIKTFPYVNWNKRGKENVIANALSKRYILI 128
KLN+R+ + ++FI++FPYV +K+GKENVIA+ALS+RY ++
Sbjct: 1121 KLNRRHAKWVEFIESFPYVIKHKKGKENVIADALSRRYAML 1161
Score = 63.9 bits (154), Expect(2) = 2e-12
Identities = 45/122 (36%), Positives = 63/122 (51%), Gaps = 2/122 (1%)
Frame = +1
Query: 445 EYKRANSTTLPYGLYILLNVP--RESCVEISIEFIF*LLRFLKGRTFLFVVAYVDEILID 618
E+K A T +GLY L +P + + + +LR GR FVV Y D+ILI
Sbjct: 851 EWKTAFKTK--FGLYEWLVMPFGLTNAPSTFMRLMNEVLRAFIGR---FVVVYFDDILIY 905
Query: 619 SKSNAYHLHHFNRVLSILRNVKLYANLGNYEFCVENGTFLGYVVSFQGFQVGANVVQAIK 798
S+S H H V LR+ +L+ NL FC + +FL YVV+ QG +V V+AI
Sbjct: 906 SRSIEDHHGHLRAVFDALRDARLFGNLEKCTFCTDRVSFLSYVVTPQGIEVDQAKVEAIH 965
Query: 799 DW 804
+W
Sbjct: 966 NW 967
Score = 36.6 bits (83), Expect(2) = 2e-12
Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 4/51 (7%)
Frame = +2
Query: 857 FYKKFIKDLSIIASPLVNVPKKMTGFTW----QICFHLIKFSNQVHHSPTL 997
FY++F+KD S IA+PL + K+ FTW + F +K +++ H+P L
Sbjct: 985 FYRRFVKDFSTIAAPLHELTKRNVTFTWAAAQRNAFDTLK--DKLTHAPLL 1033
>gb|AAK91332.1|AC090441_14 Putative gag-pol polyprotein [Oryza sativa Japonica Group]
gi|15217296|gb|AAK92640.1|AC079634_1 Putative
retroelement [Oryza sativa Japonica Group]
gi|31431373|gb|AAP53161.1| retrotransposon protein,
putative, Ty3-gypsy subclass [Oryza sativa Japonica
Group]
Length = 1708
Score = 114 bits (284), Expect(2) = 2e-32
Identities = 61/146 (41%), Positives = 88/146 (60%), Gaps = 1/146 (0%)
Frame = +1
Query: 157 VKTFKELYVSDNEFKDITDACLVVHN-DEYLRHDGFLYHVGKLCIPSCYYKFLLAKEAHS 333
++T KE Y D++FKD+ C ++++ +GF++ KLCIP+ + LL +EAH
Sbjct: 1171 LETIKEQYAHDDDFKDVLLNCKEGRTWNKFVLTNGFVFRANKLCIPASSVRMLLLQEAHG 1230
Query: 334 SGLMDCFNVSKTCVILHEHFFWLGMKRDVERFIYSCLEYKRANSTTLPYGLYILLNVPRE 513
GLM F V KT IL +HFFW M+RDVERF+ C ++A P+GLY+ L VP
Sbjct: 1231 GGLMGHFGVKKTEDILADHFFWPKMRRDVERFVARCTTCQKAKLRLNPHGLYMPLPVPSV 1290
Query: 514 SCVEISIEFIF*LLRFLKGRTFLFVV 591
+IS++F+ L R KGR +FVV
Sbjct: 1291 PWEDISMDFVLGLPRTKKGRDSIFVV 1316
Score = 53.9 bits (128), Expect(2) = 2e-32
Identities = 23/41 (56%), Positives = 36/41 (87%)
Frame = +3
Query: 6 KLNKRYVRGMKFIKTFPYVNWNKRGKENVIANALSKRYILI 128
KLN+R+ + ++FI++FPYV +K+GKENVIA+ALS+RY ++
Sbjct: 1121 KLNRRHAKWVEFIESFPYVIKHKKGKENVIADALSRRYAML 1161
Score = 66.2 bits (160), Expect(2) = 3e-13
Identities = 47/122 (38%), Positives = 63/122 (51%), Gaps = 2/122 (1%)
Frame = +1
Query: 445 EYKRANSTTLPYGLYILLNVP--RESCVEISIEFIF*LLRFLKGRTFLFVVAYVDEILID 618
E+K A T +GLY L +P + I + +LR GR FVV Y D+ILI
Sbjct: 851 EWKTAFKTK--FGLYEWLVMPFGLTNAPSTFIRLMNEVLRAFIGR---FVVVYFDDILIY 905
Query: 619 SKSNAYHLHHFNRVLSILRNVKLYANLGNYEFCVENGTFLGYVVSFQGFQVGANVVQAIK 798
S+S H H V LR+ +L+ NL FC + +FLGYVV+ QG +V V+AI
Sbjct: 906 SRSIEDHHGHLRAVFDALRDERLFGNLEKCTFCTDRVSFLGYVVTPQGIEVDQAKVEAIH 965
Query: 799 DW 804
W
Sbjct: 966 SW 967
Score = 36.6 bits (83), Expect(2) = 3e-13
Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 4/51 (7%)
Frame = +2
Query: 857 FYKKFIKDLSIIASPLVNVPKKMTGFTW----QICFHLIKFSNQVHHSPTL 997
FY++F+KD S IA+PL + K+ FTW + F +K +++ H+P L
Sbjct: 985 FYRRFVKDFSTIAAPLHELTKRNVTFTWAAAQRNAFDTLK--DKLTHAPLL 1033
>gb|AAP43919.1| integrase [Gossypium hirsutum]
Length = 334
Score = 117 bits (293), Expect(2) = 2e-32
Identities = 65/153 (42%), Positives = 88/153 (57%)
Frame = +1
Query: 133 TL*AQ*LSVKTFKELYVSDNEFKDITDACLVVHNDEYLRHDGFLYHVGKLCIPSCYYKFL 312
TL A+ L + KELY D +F I C +++ DG L+ + +LCIP C + L
Sbjct: 106 TLNAKVLGFEHIKELYDDDTDFSHIYKNCGHTAFEKFYLVDGLLFRLNRLCIPKCSMREL 165
Query: 313 LAKEAHSSGLMDCFNVSKTCVILHEHFFWLGMKRDVERFIYSCLEYKRANSTTLPYGLYI 492
L EAHS GLM F V+KT IL EHF W MK+DVE+ C+ K+A S + +GLY
Sbjct: 166 LIHEAHSGGLMGHFGVAKTLDILQEHFHWPHMKKDVEKVCSKCITCKQAKSKVMLHGLYT 225
Query: 493 LLNVPRESCVEISIEFIF*LLRFLKGRTFLFVV 591
L +P V++S++FI L R KGR +FVV
Sbjct: 226 PLPIPTSPWVDLSMDFILGLPRTKKGRDSIFVV 258
Score = 50.1 bits (118), Expect(2) = 2e-32
Identities = 23/41 (56%), Positives = 33/41 (80%)
Frame = +3
Query: 6 KLNKRYVRGMKFIKTFPYVNWNKRGKENVIANALSKRYILI 128
KL+KR+ R ++FI+TFPY+ K G +NV+A+ALS+RY LI
Sbjct: 64 KLSKRHARWVEFIETFPYMIQYKIGNDNVVADALSRRYTLI 104
>ref|XP_006366953.1| PREDICTED: uncharacterized protein LOC102594328 [Solanum tuberosum]
Length = 1191
Score = 110 bits (276), Expect(2) = 6e-32
Identities = 59/142 (41%), Positives = 84/142 (59%)
Frame = +1
Query: 133 TL*AQ*LSVKTFKELYVSDNEFKDITDACLVVHNDEYLRHDGFLYHVGKLCIPSCYYKFL 312
TL ++ L K LY +D++F +I C + +++ D FL+ KLC+P+C + L
Sbjct: 846 TLTSKLLGFDQIKFLYANDSDFGEIFAECKLGPFEKFNLQDEFLFKENKLCVPNCSLREL 905
Query: 313 LAKEAHSSGLMDCFNVSKTCVILHEHFFWLGMKRDVERFIYSCLEYKRANSTTLPYGLYI 492
+EAH GLM F V KT IL EHF+W M++DVE+ CLE K+A S TLP+GLY
Sbjct: 906 FVREAHYGGLMGHFGVPKTLEILSEHFYWPSMRKDVEKVCSYCLECKQAKSRTLPHGLYT 965
Query: 493 LLNVPRESCVEISIEFIF*LLR 558
L V ++IS++FI L R
Sbjct: 966 PLPVSNSPWIDISMDFILGLPR 987
Score = 55.1 bits (131), Expect(2) = 6e-32
Identities = 25/48 (52%), Positives = 38/48 (79%)
Frame = +3
Query: 6 KLNKRYVRGMKFIKTFPYVNWNKRGKENVIANALSKRYILIFYFISSM 149
KL++R+ + ++FI+TFPYV K+GKENV+A+ALS+RY+LI S +
Sbjct: 804 KLSRRHAKWVEFIETFPYVIAYKQGKENVVADALSRRYVLISTLTSKL 851
>gb|AAQ56407.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
Length = 1619
Score = 112 bits (281), Expect(2) = 1e-31
Identities = 61/146 (41%), Positives = 87/146 (59%), Gaps = 1/146 (0%)
Frame = +1
Query: 157 VKTFKELYVSDNEFKDITDACLVVHN-DEYLRHDGFLYHVGKLCIPSCYYKFLLAKEAHS 333
++T KE Y D++FKD+ C ++++ +GF++ KLCIP+ LL +EAH
Sbjct: 1067 LETIKEQYAHDDDFKDVLLNCKEGRTWNKFVLTNGFVFRANKLCIPASSVHMLLLQEAHG 1126
Query: 334 SGLMDCFNVSKTCVILHEHFFWLGMKRDVERFIYSCLEYKRANSTTLPYGLYILLNVPRE 513
GLM F V KT IL +H FW M+RDVERF+ C ++A S P+GLY+ L VP
Sbjct: 1127 GGLMGHFGVKKTEDILADHLFWPKMRRDVERFVARCTTCQKAKSRLNPHGLYMPLPVPSV 1186
Query: 514 SCVEISIEFIF*LLRFLKGRTFLFVV 591
+IS++F+ L R KGR +FVV
Sbjct: 1187 PWEDISMDFVLGLPRTKKGRDSIFVV 1212
Score = 52.4 bits (124), Expect(2) = 1e-31
Identities = 22/41 (53%), Positives = 35/41 (85%)
Frame = +3
Query: 6 KLNKRYVRGMKFIKTFPYVNWNKRGKENVIANALSKRYILI 128
KLN+R+ + ++FI++FPYV +K+GKENVI +ALS+RY ++
Sbjct: 1017 KLNRRHAKWVEFIESFPYVIKHKKGKENVIVDALSRRYAML 1057
Score = 65.9 bits (159), Expect(2) = 1e-12
Identities = 46/122 (37%), Positives = 63/122 (51%), Gaps = 2/122 (1%)
Frame = +1
Query: 445 EYKRANSTTLPYGLYILLNVP--RESCVEISIEFIF*LLRFLKGRTFLFVVAYVDEILID 618
E+K A T +GLY L +P + + + +LR GR FVV Y D+ILI
Sbjct: 747 EWKTAFKTK--FGLYEWLVMPFGLTNAPSTFMRLMNEVLRAFIGR---FVVVYFDDILIY 801
Query: 619 SKSNAYHLHHFNRVLSILRNVKLYANLGNYEFCVENGTFLGYVVSFQGFQVGANVVQAIK 798
S+S H H V LR+ +L+ NL FC + +FLGYVV+ QG +V V+AI
Sbjct: 802 SRSIEDHHGHLRAVFDALRDARLFGNLEKCTFCTDRVSFLGYVVTPQGIEVDQAKVEAIH 861
Query: 799 DW 804
W
Sbjct: 862 SW 863
Score = 35.0 bits (79), Expect(2) = 1e-12
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 4/51 (7%)
Frame = +2
Query: 857 FYKKFIKDLSIIASPLVNVPKKMTGFTW----QICFHLIKFSNQVHHSPTL 997
FY+ F+KD S IA+PL + K+ FTW + F +K +++ H+P L
Sbjct: 881 FYRLFVKDFSTIAAPLHELTKRNVTFTWAAAQRNAFDTLK--DKLTHAPLL 929