BLASTX nr result
ID: Catharanthus22_contig00014576
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus22_contig00014576
(925 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006490837.1| PREDICTED: uncharacterized protein LOC102624... 266 1e-68
ref|XP_006606762.1| PREDICTED: uncharacterized protein LOC102662... 257 4e-66
gb|AAW28576.2| Gag-pol polyprotein, putative [Solanum demissum] 251 2e-64
gb|AAW28578.1| Putative gag-pol polyprotein, identical [Solanum ... 251 2e-64
gb|AAW28577.1| Putative gag-pol polyprotein, identical [Solanum ... 251 2e-64
gb|ABE60891.1| putative polyprotein [Oryza sativa Japonica Group] 250 5e-64
gb|AAT85159.1| unknown protein [Oryza sativa Japonica Group] gi|... 250 5e-64
ref|NP_001063540.1| Os09g0491900 [Oryza sativa Japonica Group] g... 248 3e-63
gb|AAV88076.1| putative retrotransposon polyprotein [Ipomoea bat... 247 4e-63
gb|AAU90169.1| putative polyprotein [Oryza sativa Japonica Group] 240 6e-61
emb|CAN77900.1| hypothetical protein VITISV_037350 [Vitis vinifera] 234 3e-59
gb|AAF79348.1|AC007887_7 F15O4.13 [Arabidopsis thaliana] 228 3e-57
emb|CAN77247.1| hypothetical protein VITISV_021658 [Vitis vinifera] 225 2e-56
gb|AAS07051.1| retrotransposon protein, putative, Ty3-gypsy sub-... 224 3e-56
gb|AAK51582.1|AC022352_18 Putative retroelement [Oryza sativa Ja... 223 6e-56
gb|AAM94350.1| gag-pol polyprotein [Zea mays] 220 5e-55
gb|ABI96971.1| putative gag-pol polyprotein [Triticum monococcum... 220 7e-55
gb|AAX95950.1| retrotransposon protein, putative, Ty3-gypsy sub-... 218 2e-54
gb|AAQ56407.1| putative gag-pol polyprotein [Oryza sativa Japoni... 218 2e-54
dbj|BAA89466.1| gag-pol polyprotein [Oryza sativa Indica Group] 217 6e-54
>ref|XP_006490837.1| PREDICTED: uncharacterized protein LOC102624555 [Citrus sinensis]
Length = 821
Score = 266 bits (679), Expect = 1e-68
Identities = 125/193 (64%), Positives = 151/193 (78%)
Frame = -2
Query: 921 CHLQTDGQTEVVNRTIGQLLRAILKKKLRQWEECLPHIEFAYNRAPHSTTSHSPFQVVYG 742
CH QTDGQTEVVNRT+ LLRAI++K L+ WEECLPH+EFAYNR HS T SPF++VYG
Sbjct: 284 CHPQTDGQTEVVNRTLSTLLRAIIQKNLKTWEECLPHVEFAYNRTVHSATKFSPFEIVYG 343
Query: 741 FNPLTPFDLVPLPIDQALSKDASKKANFMKAIHIKVHEAIVNSNKKLVEKRNVGRRKVVF 562
FNPLTP DL+PLPID+ S D KKA F+K +H + + I ++ + N GR++VVF
Sbjct: 344 FNPLTPLDLLPLPIDERASMDGKKKAEFVKQLHERTRQHIEKRTEQYATQANKGRKQVVF 403
Query: 561 KPGD*VWVHFRKERFPQQRKSKLDDRGDGQFQILEKINDNAYKVDLPGHYNVSATFNVSD 382
+PGD VWVH RKERFP QR+SKL RGDG FQ++ +INDNAYK+DLPG YNV ATFNVSD
Sbjct: 404 QPGDWVWVHMRKERFPAQRRSKLLPRGDGPFQVVARINDNAYKLDLPGEYNVIATFNVSD 463
Query: 381 LSLFDIGDGDSRT 343
LS FD+G+ DSRT
Sbjct: 464 LSPFDVGE-DSRT 475
>ref|XP_006606762.1| PREDICTED: uncharacterized protein LOC102662828 [Glycine max]
Length = 612
Score = 257 bits (657), Expect = 4e-66
Identities = 122/190 (64%), Positives = 143/190 (75%), Gaps = 1/190 (0%)
Frame = -2
Query: 921 CHLQTDGQTEVVNRTIGQLLRAILKKKLRQWEECLPHIEFAYNRAPHSTTSHSPFQVVYG 742
CH QTDGQTEVVN+T+G LLR +LKK L+ WE CLPH+EFAYNR HSTT+ SPF++VYG
Sbjct: 414 CHPQTDGQTEVVNKTLGTLLRTVLKKNLKSWEACLPHVEFAYNRTVHSTTNCSPFEIVYG 473
Query: 741 FNPLTPFDLVPLP-IDQALSKDASKKANFMKAIHIKVHEAIVNSNKKLVEKRNVGRRKVV 565
FNPLTP DL+P+P I KDA KA ++K +H +V I N + N R+KVV
Sbjct: 474 FNPLTPLDLLPMPNITMFKHKDAQAKAEYVKKLHEQVKAQIEKKNASYARQANKSRKKVV 533
Query: 564 FKPGD*VWVHFRKERFPQQRKSKLDDRGDGQFQILEKINDNAYKVDLPGHYNVSATFNVS 385
+PGD VWVH +KERFP+ RKSKL RGDG FQ+LEKINDNAYK+DLP YNVSATFNVS
Sbjct: 534 LEPGDWVWVHLKKERFPEHRKSKLQPRGDGPFQVLEKINDNAYKIDLPNEYNVSATFNVS 593
Query: 384 DLSLFDIGDG 355
DLSLFD G
Sbjct: 594 DLSLFDADGG 603
>gb|AAW28576.2| Gag-pol polyprotein, putative [Solanum demissum]
Length = 1096
Score = 251 bits (642), Expect = 2e-64
Identities = 122/194 (62%), Positives = 149/194 (76%)
Frame = -2
Query: 924 ACHLQTDGQTEVVNRTIGQLLRAILKKKLRQWEECLPHIEFAYNRAPHSTTSHSPFQVVY 745
+CH QTDGQTEVVNRT+G +LRAILK KL WE+ LP +EFAYNR HS+T +PF+VVY
Sbjct: 818 SCHPQTDGQTEVVNRTLGNMLRAILKGKLTSWEDYLPIVEFAYNRTFHSSTGKTPFEVVY 877
Query: 744 GFNPLTPFDLVPLPIDQALSKDASKKANFMKAIHIKVHEAIVNSNKKLVEKRNVGRRKVV 565
GFNPLTP DL+PLP + + D KKA+ MK IH + AI NK++ +RN GR+ V+
Sbjct: 878 GFNPLTPLDLLPLPTNDFANLDGKKKADMMKKIHEQTRLAIEKKNKEVALRRNKGRKYVI 937
Query: 564 FKPGD*VWVHFRKERFPQQRKSKLDDRGDGQFQILEKINDNAYKVDLPGHYNVSATFNVS 385
FKPGD VWVH RKERFP +RK+KLD RG G +++LE+I DNAYK+DLPG + VSATFNVS
Sbjct: 938 FKPGDLVWVHMRKERFPSKRKTKLDPRGSGPYKVLERIGDNAYKLDLPGEFQVSATFNVS 997
Query: 384 DLSLFDIGDGDSRT 343
DLS +D D DSRT
Sbjct: 998 DLSHYD-ADLDSRT 1010
>gb|AAW28578.1| Putative gag-pol polyprotein, identical [Solanum demissum]
Length = 1588
Score = 251 bits (642), Expect = 2e-64
Identities = 122/194 (62%), Positives = 149/194 (76%)
Frame = -2
Query: 924 ACHLQTDGQTEVVNRTIGQLLRAILKKKLRQWEECLPHIEFAYNRAPHSTTSHSPFQVVY 745
+CH QTDGQTEVVNRT+G +LRAILK KL WE+ LP +EFAYNR HS+T +PF+VVY
Sbjct: 1310 SCHPQTDGQTEVVNRTLGNMLRAILKGKLTSWEDYLPIVEFAYNRTFHSSTGKTPFEVVY 1369
Query: 744 GFNPLTPFDLVPLPIDQALSKDASKKANFMKAIHIKVHEAIVNSNKKLVEKRNVGRRKVV 565
GFNPLTP DL+PLP + + D KKA+ MK IH + AI NK++ +RN GR+ V+
Sbjct: 1370 GFNPLTPLDLLPLPTNDFANLDGKKKADMMKKIHEQTRLAIEKKNKEVALRRNKGRKYVI 1429
Query: 564 FKPGD*VWVHFRKERFPQQRKSKLDDRGDGQFQILEKINDNAYKVDLPGHYNVSATFNVS 385
FKPGD VWVH RKERFP +RK+KLD RG G +++LE+I DNAYK+DLPG + VSATFNVS
Sbjct: 1430 FKPGDLVWVHMRKERFPSKRKTKLDPRGSGPYKVLERIGDNAYKLDLPGEFQVSATFNVS 1489
Query: 384 DLSLFDIGDGDSRT 343
DLS +D D DSRT
Sbjct: 1490 DLSHYD-ADLDSRT 1502
>gb|AAW28577.1| Putative gag-pol polyprotein, identical [Solanum demissum]
Length = 1588
Score = 251 bits (642), Expect = 2e-64
Identities = 122/194 (62%), Positives = 149/194 (76%)
Frame = -2
Query: 924 ACHLQTDGQTEVVNRTIGQLLRAILKKKLRQWEECLPHIEFAYNRAPHSTTSHSPFQVVY 745
+CH QTDGQTEVVNRT+G +LRAILK KL WE+ LP +EFAYNR HS+T +PF+VVY
Sbjct: 1310 SCHPQTDGQTEVVNRTLGNMLRAILKGKLTSWEDYLPIVEFAYNRTFHSSTGKTPFEVVY 1369
Query: 744 GFNPLTPFDLVPLPIDQALSKDASKKANFMKAIHIKVHEAIVNSNKKLVEKRNVGRRKVV 565
GFNPLTP DL+PLP + + D KKA+ MK IH + AI NK++ +RN GR+ V+
Sbjct: 1370 GFNPLTPLDLLPLPTNDFANLDGKKKADMMKKIHEQTRLAIEKKNKEVALRRNKGRKYVI 1429
Query: 564 FKPGD*VWVHFRKERFPQQRKSKLDDRGDGQFQILEKINDNAYKVDLPGHYNVSATFNVS 385
FKPGD VWVH RKERFP +RK+KLD RG G +++LE+I DNAYK+DLPG + VSATFNVS
Sbjct: 1430 FKPGDLVWVHMRKERFPSKRKTKLDPRGSGPYKVLERIGDNAYKLDLPGEFQVSATFNVS 1489
Query: 384 DLSLFDIGDGDSRT 343
DLS +D D DSRT
Sbjct: 1490 DLSHYD-ADLDSRT 1502
>gb|ABE60891.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1713
Score = 250 bits (639), Expect = 5e-64
Identities = 120/196 (61%), Positives = 149/196 (76%)
Frame = -2
Query: 921 CHLQTDGQTEVVNRTIGQLLRAILKKKLRQWEECLPHIEFAYNRAPHSTTSHSPFQVVYG 742
CH QTDGQTEVVNRT+ LLRA++KK L++WEECLPH+EFAYNRA HSTT+ PF+VVYG
Sbjct: 1361 CHPQTDGQTEVVNRTLSMLLRALIKKNLKEWEECLPHVEFAYNRAVHSTTNMCPFEVVYG 1420
Query: 741 FNPLTPFDLVPLPIDQALSKDASKKANFMKAIHIKVHEAIVNSNKKLVEKRNVGRRKVVF 562
F PL+P DL+PLP+ + +ASK+A ++K IH K EAI +K N R+KV F
Sbjct: 1421 FKPLSPIDLLPLPLQERSDMEASKRATYVKKIHEKTKEAIEKRSKYYAAWANKNRKKVTF 1480
Query: 561 KPGD*VWVHFRKERFPQQRKSKLDDRGDGQFQILEKINDNAYKVDLPGHYNVSATFNVSD 382
+PGD VWVH RK+RFPQ+RKSKL RGDG F++L KINDNAYK++LP Y VS+TFNV+D
Sbjct: 1481 EPGDLVWVHLRKDRFPQKRKSKLMPRGDGPFRVLSKINDNAYKIELPEDYGVSSTFNVAD 1540
Query: 381 LSLFDIGDGDSRTGRS 334
L+ F G DS + RS
Sbjct: 1541 LTPF-FGLEDSESSRS 1555
>gb|AAT85159.1| unknown protein [Oryza sativa Japonica Group]
gi|52353557|gb|AAU44123.1| putative polyprotein [Oryza
sativa Japonica Group]
Length = 681
Score = 250 bits (639), Expect = 5e-64
Identities = 120/196 (61%), Positives = 149/196 (76%)
Frame = -2
Query: 921 CHLQTDGQTEVVNRTIGQLLRAILKKKLRQWEECLPHIEFAYNRAPHSTTSHSPFQVVYG 742
CH QTDGQTEVVNRT+ LLRA++KK L++WEECLPH+EFAYNRA HSTT+ PF+VVYG
Sbjct: 329 CHPQTDGQTEVVNRTLSMLLRALIKKNLKEWEECLPHVEFAYNRAVHSTTNMCPFEVVYG 388
Query: 741 FNPLTPFDLVPLPIDQALSKDASKKANFMKAIHIKVHEAIVNSNKKLVEKRNVGRRKVVF 562
F PL+P DL+PLP+ + +ASK+A ++K IH K EAI +K N R+KV F
Sbjct: 389 FKPLSPIDLLPLPLQERSDMEASKRATYVKKIHEKTKEAIEKRSKYYAAWANKNRKKVTF 448
Query: 561 KPGD*VWVHFRKERFPQQRKSKLDDRGDGQFQILEKINDNAYKVDLPGHYNVSATFNVSD 382
+PGD VWVH RK+RFPQ+RKSKL RGDG F++L KINDNAYK++LP Y VS+TFNV+D
Sbjct: 449 EPGDLVWVHLRKDRFPQKRKSKLMPRGDGPFRVLSKINDNAYKIELPEDYGVSSTFNVAD 508
Query: 381 LSLFDIGDGDSRTGRS 334
L+ F G DS + RS
Sbjct: 509 LTPF-FGLEDSESSRS 523
>ref|NP_001063540.1| Os09g0491900 [Oryza sativa Japonica Group]
gi|113631773|dbj|BAF25454.1| Os09g0491900 [Oryza sativa
Japonica Group]
Length = 681
Score = 248 bits (632), Expect = 3e-63
Identities = 120/196 (61%), Positives = 146/196 (74%)
Frame = -2
Query: 921 CHLQTDGQTEVVNRTIGQLLRAILKKKLRQWEECLPHIEFAYNRAPHSTTSHSPFQVVYG 742
CH QTDGQTEVVNRT+ LLRA++KK L++WEECLPH+EFAYNRA HSTT+ PF+VVYG
Sbjct: 329 CHPQTDGQTEVVNRTLSMLLRALIKKNLKEWEECLPHVEFAYNRAVHSTTNMCPFEVVYG 388
Query: 741 FNPLTPFDLVPLPIDQALSKDASKKANFMKAIHIKVHEAIVNSNKKLVEKRNVGRRKVVF 562
F PL P DL+PLP+ + +ASK A ++K IH K EAI +K N R+KV F
Sbjct: 389 FKPLAPIDLLPLPLQERSDMEASKHATYVKKIHEKTKEAIEKRSKYYAAWANKDRKKVTF 448
Query: 561 KPGD*VWVHFRKERFPQQRKSKLDDRGDGQFQILEKINDNAYKVDLPGHYNVSATFNVSD 382
+PGD VWVH RK+RFPQ+RKSKL RGDG F++L KINDNAYK++LP Y VS TFNV+D
Sbjct: 449 EPGDLVWVHLRKDRFPQKRKSKLMPRGDGPFRVLSKINDNAYKIELPEDYGVSPTFNVAD 508
Query: 381 LSLFDIGDGDSRTGRS 334
L+ F G DS + RS
Sbjct: 509 LTPF-FGLEDSESSRS 523
>gb|AAV88076.1| putative retrotransposon polyprotein [Ipomoea batatas]
Length = 1358
Score = 247 bits (631), Expect = 4e-63
Identities = 114/189 (60%), Positives = 145/189 (76%)
Frame = -2
Query: 924 ACHLQTDGQTEVVNRTIGQLLRAILKKKLRQWEECLPHIEFAYNRAPHSTTSHSPFQVVY 745
ACH QTDGQTEVVNRT+ QLLR +++K L+ WEE LP++EFAYNRA HSTT+ SPF+V Y
Sbjct: 1080 ACHPQTDGQTEVVNRTLTQLLRVVIRKNLKSWEESLPYVEFAYNRAIHSTTNMSPFEVAY 1139
Query: 744 GFNPLTPFDLVPLPIDQALSKDASKKANFMKAIHIKVHEAIVNSNKKLVEKRNVGRRKVV 565
GFNPLTP DL+PL ++ DA+KKA ++ H KV I N++ +K N GR+ ++
Sbjct: 1140 GFNPLTPLDLIPLHVNDKECVDAAKKAQGIREFHSKVRAQIEKKNEQYAQKANKGRKAII 1199
Query: 564 FKPGD*VWVHFRKERFPQQRKSKLDDRGDGQFQILEKINDNAYKVDLPGHYNVSATFNVS 385
FKPGD VW+H+ K RFP QRKSKL RGDG FQ+LE+INDNAYK+DL G ++VS+TFNV+
Sbjct: 1200 FKPGDWVWIHYSKNRFPNQRKSKLMPRGDGPFQVLERINDNAYKLDLRGEHSVSSTFNVA 1259
Query: 384 DLSLFDIGD 358
DL+ FD D
Sbjct: 1260 DLAPFDFSD 1268
>gb|AAU90169.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1154
Score = 240 bits (612), Expect = 6e-61
Identities = 112/194 (57%), Positives = 145/194 (74%), Gaps = 1/194 (0%)
Frame = -2
Query: 921 CHLQTDGQTEVVNRTIGQLLRAILKKKLRQWEECLPHIEFAYNRAPHSTTSHSPFQVVYG 742
CH Q DGQ EVVNRT+ LLR ++KK L++WE+CLPH+EFAYNR HSTT SPF+VVYG
Sbjct: 960 CHSQIDGQMEVVNRTLSMLLRMMIKKNLKEWEDCLPHVEFAYNRVVHSTTQLSPFEVVYG 1019
Query: 741 FNPLTPFDLVPLPIDQALSKDASKKANFMKAIHIKVHEAIVNSNKKLVEKRNVGRRKVVF 562
FNP+TP DL+PLP+ + + +A+K+A+++K +H K E I + K N R+K++F
Sbjct: 1020 FNPITPLDLLPLPLQERANMEATKRADYVKKMHEKTKETIERIIQSYAAKANKDRKKMLF 1079
Query: 561 KPGD*VWVHFRKERFPQQRKSKLDDRGDGQFQILEKINDNAYKVDLPGHYNVSATFNVSD 382
+PG+ VWVH RK+RFP++RKSKL GDG F++LEKI DNAYK+DLPG Y VS TFNV D
Sbjct: 1080 QPGELVWVHLRKDRFPEKRKSKLMPHGDGPFRVLEKITDNAYKIDLPGDYTVSNTFNVVD 1139
Query: 381 LS-LFDIGDGDSRT 343
LS F + DSRT
Sbjct: 1140 LSPFFGTEETDSRT 1153
>emb|CAN77900.1| hypothetical protein VITISV_037350 [Vitis vinifera]
Length = 1173
Score = 234 bits (597), Expect = 3e-59
Identities = 116/193 (60%), Positives = 141/193 (73%)
Frame = -2
Query: 921 CHLQTDGQTEVVNRTIGQLLRAILKKKLRQWEECLPHIEFAYNRAPHSTTSHSPFQVVYG 742
CH QTDGQ EVVNRT+ LLR I++K L+ WE+CLP EFAYNR+ HSTTS SPF++VYG
Sbjct: 950 CHPQTDGQIEVVNRTLSTLLRTIIQKNLKNWEDCLPFTEFAYNRSVHSTTSFSPFEIVYG 1009
Query: 741 FNPLTPFDLVPLPIDQALSKDASKKANFMKAIHIKVHEAIVNSNKKLVEKRNVGRRKVVF 562
FNPLTP DL+PLP+++ S D K N++ V K N GRR+V+F
Sbjct: 1010 FNPLTPLDLLPLPVNEMTSLDEKK-------------------NEQYVTKANKGRRQVLF 1050
Query: 561 KPGD*VWVHFRKERFPQQRKSKLDDRGDGQFQILEKINDNAYKVDLPGHYNVSATFNVSD 382
+ GD VWVH RKERFP +R+SKL RGDG FQ+LE+INDNAYK+DL G YN+SATF VSD
Sbjct: 1051 ESGDWVWVHMRKERFPTRRQSKLHPRGDGPFQVLERINDNAYKLDLLGEYNISATFKVSD 1110
Query: 381 LSLFDIGDGDSRT 343
LS F++GD DSRT
Sbjct: 1111 LSPFNVGD-DSRT 1122
>gb|AAF79348.1|AC007887_7 F15O4.13 [Arabidopsis thaliana]
Length = 1887
Score = 228 bits (580), Expect = 3e-57
Identities = 105/193 (54%), Positives = 140/193 (72%)
Frame = -2
Query: 921 CHLQTDGQTEVVNRTIGQLLRAILKKKLRQWEECLPHIEFAYNRAPHSTTSHSPFQVVYG 742
CH QTDGQTEVVNRT+ LLRA++KK L+ WE+CLPH+EFAYN + HS + SPFQ+VYG
Sbjct: 1549 CHPQTDGQTEVVNRTLSTLLRALIKKNLKTWEDCLPHVEFAYNHSMHSASKFSPFQIVYG 1608
Query: 741 FNPLTPFDLVPLPIDQALSKDASKKANFMKAIHIKVHEAIVNSNKKLVEKRNVGRRKVVF 562
FNP TP DL+PLP+ + +S D KKA ++ IH + + I K+ + N R++V+F
Sbjct: 1609 FNPTTPLDLMPLPLSERVSLDGKKKAELVQQIHEQAKKNIEEKTKQYAKHANKSRKEVIF 1668
Query: 561 KPGD*VWVHFRKERFPQQRKSKLDDRGDGQFQILEKINDNAYKVDLPGHYNVSATFNVSD 382
GD VW+H RKERFP++RKSKL R DG F++L++IN+NAY +DL G YNVS +FNV+D
Sbjct: 1669 NEGDLVWIHLRKERFPKERKSKLMSRIDGPFKVLKRINNNAYSLDLQGKYNVSNSFNVAD 1728
Query: 381 LSLFDIGDGDSRT 343
L F + D R+
Sbjct: 1729 LFPFIADNTDLRS 1741
>emb|CAN77247.1| hypothetical protein VITISV_021658 [Vitis vinifera]
Length = 1323
Score = 225 bits (573), Expect = 2e-56
Identities = 114/209 (54%), Positives = 144/209 (68%), Gaps = 9/209 (4%)
Frame = -2
Query: 924 ACHLQTDGQTEVVNRTIGQLLR---------AILKKKLRQWEECLPHIEFAYNRAPHSTT 772
+CH +TD T + N +++R + K L+ WE+CLP IEFAYNR+ HSTT
Sbjct: 1050 SCH-KTDDATHIANLFFREIVRLHXVPRSIVSDRDKNLKNWEDCLPFIEFAYNRSIHSTT 1108
Query: 771 SHSPFQVVYGFNPLTPFDLVPLPIDQALSKDASKKANFMKAIHIKVHEAIVNSNKKLVEK 592
+ SPF +VYGFNPLT DL+PLP ++ S D KKA +K +H V + I N++ K
Sbjct: 1109 NFSPFXIVYGFNPLTLLDLLPLPFNEMTSLDGEKKAZMVKKLHESVQKHIEKKNEQYATK 1168
Query: 591 RNVGRRKVVFKPGD*VWVHFRKERFPQQRKSKLDDRGDGQFQILEKINDNAYKVDLPGHY 412
N GRR+V+F+PGD VWVH RKERFP +R+SKL RGDG FQ+LE+INDNAYK+DLP Y
Sbjct: 1169 ANKGRRQVLFEPGDWVWVHMRKERFPTRRRSKLHPRGDGPFQVLERINDNAYKLDLPXEY 1228
Query: 411 NVSATFNVSDLSLFDIGDGDSRTGRSCES 325
N+SATFNV DLS FD+GD DSRT ES
Sbjct: 1229 NISATFNVXDLSPFDVGD-DSRTNPFEES 1256
>gb|AAS07051.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa
Japonica Group]
Length = 1223
Score = 224 bits (572), Expect = 3e-56
Identities = 109/196 (55%), Positives = 138/196 (70%)
Frame = -2
Query: 921 CHLQTDGQTEVVNRTIGQLLRAILKKKLRQWEECLPHIEFAYNRAPHSTTSHSPFQVVYG 742
CH QTDGQTEVVN T+G +LRAILKK L+ WEECLPH+EFAYNRA HSTT SPFQVVYG
Sbjct: 906 CHPQTDGQTEVVNCTLGTMLRAILKKNLKMWEECLPHVEFAYNRATHSTTKVSPFQVVYG 965
Query: 741 FNPLTPFDLVPLPIDQALSKDASKKANFMKAIHIKVHEAIVNSNKKLVEKRNVGRRKVVF 562
FNP P D++PLP + + D +A F+ +H I N +K + GR++V
Sbjct: 966 FNPRAPIDILPLPTSERVHNDTKARAEFILKMHESTKLNIENMTEKCRIAGSKGRQEVKL 1025
Query: 561 KPGD*VWVHFRKERFPQQRKSKLDDRGDGQFQILEKINDNAYKVDLPGHYNVSATFNVSD 382
+PGD VW+H RK+RFP+ RKSKL R DG F+I+EKINDNAYK++LP + VS TFN+SD
Sbjct: 1026 RPGDLVWLHLRKDRFPELRKSKLMPRADGLFKIVEKINDNAYKLELPPEFGVSPTFNISD 1085
Query: 381 LSLFDIGDGDSRTGRS 334
L + +G+ D R+
Sbjct: 1086 LKPY-LGEEDELESRT 1100
>gb|AAK51582.1|AC022352_18 Putative retroelement [Oryza sativa Japonica Group]
gi|31431012|gb|AAP52850.1| retrotransposon protein,
putative, Ty3-gypsy subclass [Oryza sativa Japonica
Group]
Length = 2447
Score = 223 bits (569), Expect = 6e-56
Identities = 108/198 (54%), Positives = 137/198 (69%)
Frame = -2
Query: 921 CHLQTDGQTEVVNRTIGQLLRAILKKKLRQWEECLPHIEFAYNRAPHSTTSHSPFQVVYG 742
CH QTDGQTEVVNRT+ +LRA+LKK ++ WEECLPHIEFAYNR+ HSTT PFQ+VYG
Sbjct: 1358 CHPQTDGQTEVVNRTLSTMLRAVLKKNIKMWEECLPHIEFAYNRSLHSTTKMCPFQIVYG 1417
Query: 741 FNPLTPFDLVPLPIDQALSKDASKKANFMKAIHIKVHEAIVNSNKKLVEKRNVGRRKVVF 562
P P DL+PLP + L+ DA ++A M +H E I N K + GRR++ F
Sbjct: 1418 LLPRAPIDLMPLPSSEKLNFDAKQRAELMLKLHETTKENIERMNAKYKFAGDKGRRELTF 1477
Query: 561 KPGD*VWVHFRKERFPQQRKSKLDDRGDGQFQILEKINDNAYKVDLPGHYNVSATFNVSD 382
+PGD VW+H RKERFP RKSKL R DG F++L KIN+NAYK+DLP + VS TFNV+D
Sbjct: 1478 EPGDLVWLHLRKERFPDLRKSKLMPRADGPFKVLAKINENAYKIDLPADFGVSPTFNVAD 1537
Query: 381 LSLFDIGDGDSRTGRSCE 328
L + +G+ D R+ +
Sbjct: 1538 LKPY-LGEEDELESRTTQ 1554
Score = 70.9 bits (172), Expect = 7e-10
Identities = 55/185 (29%), Positives = 89/185 (48%), Gaps = 3/185 (1%)
Frame = -2
Query: 924 ACHLQTDGQTEVVNRTIGQLLRAILKKKLRQWEECLPHIEFAYNRAPHSTTSHSPFQVVY 745
A H QTDGQTE +N+ + +L A + + W++ LP+ EF+YN + ++ +P++ +Y
Sbjct: 2179 AYHPQTDGQTERLNQILEDMLHACVLDFGKTWDKSLPYAEFSYNNSYQASIQMAPYEALY 2238
Query: 744 GFNPLTPFDLVPLPIDQALSKDASKKANFMKAIHIKVHEAIVNSNKKLVEKRNVGRRKVV 565
G TP + Q D ++A K I + + S +K RR +
Sbjct: 2239 GRKCRTPLLWDQVGESQVFGTDILREAE-AKVRTIWDNLKVAQSRQKSYADNR--RRNLE 2295
Query: 564 FKPGD*VWVHFRKERFPQ--QRKSKLDDRGDGQFQILEKINDNAYKVDLPGHY-NVSATF 394
F D V++ R Q K KL R G F+I+ + + AY+++LP NV F
Sbjct: 2296 FAVDDFVYLRVTPLRGVHRFQTKGKLAPRFVGPFRIIARRGEVAYQLELPASLGNVHDVF 2355
Query: 393 NVSDL 379
+VS L
Sbjct: 2356 HVSQL 2360
>gb|AAM94350.1| gag-pol polyprotein [Zea mays]
Length = 1618
Score = 220 bits (561), Expect = 5e-55
Identities = 102/181 (56%), Positives = 132/181 (72%)
Frame = -2
Query: 921 CHLQTDGQTEVVNRTIGQLLRAILKKKLRQWEECLPHIEFAYNRAPHSTTSHSPFQVVYG 742
CH QTDGQTEVVNRT+ +LRA+LKK ++ WE+CLPHIEFAYNR+ HSTT PFQ+VYG
Sbjct: 1361 CHPQTDGQTEVVNRTLSTMLRAVLKKNIKMWEDCLPHIEFAYNRSLHSTTKMCPFQIVYG 1420
Query: 741 FNPLTPFDLVPLPIDQALSKDASKKANFMKAIHIKVHEAIVNSNKKLVEKRNVGRRKVVF 562
P P DL+PLP + L+ DA+++A M +H E I N + + GR+++ F
Sbjct: 1421 LLPRAPIDLMPLPSSEKLNFDATRRAELMLKLHETTKENIERMNARYKFASDKGRKEINF 1480
Query: 561 KPGD*VWVHFRKERFPQQRKSKLDDRGDGQFQILEKINDNAYKVDLPGHYNVSATFNVSD 382
+PGD VW+H RKERFP+ RKSKL R DG F++LEKINDNAY++DLP + VS TFN++D
Sbjct: 1481 EPGDLVWLHLRKERFPELRKSKLLPRADGPFKVLEKINDNAYRLDLPADFGVSPTFNIAD 1540
Query: 381 L 379
L
Sbjct: 1541 L 1541
>gb|ABI96971.1| putative gag-pol polyprotein [Triticum monococcum subsp.
aegilopoides]
Length = 1704
Score = 220 bits (560), Expect = 7e-55
Identities = 106/196 (54%), Positives = 136/196 (69%)
Frame = -2
Query: 921 CHLQTDGQTEVVNRTIGQLLRAILKKKLRQWEECLPHIEFAYNRAPHSTTSHSPFQVVYG 742
CH QTDGQTEVVNRT+ +LRA+LK + WEECLPHIEFAYNR+ HSTT PF++VYG
Sbjct: 1402 CHPQTDGQTEVVNRTLSTMLRAVLKNNKKMWEECLPHIEFAYNRSLHSTTKMCPFEIVYG 1461
Query: 741 FNPLTPFDLVPLPIDQALSKDASKKANFMKAIHIKVHEAIVNSNKKLVEKRNVGRRKVVF 562
F P P DL+PLP + ++ DA +++ + IH E I N K R+ GR+ VVF
Sbjct: 1462 FLPRAPIDLLPLPSSEKVNFDAKERSELILKIHELTKENIERMNAKYKLARDKGRKHVVF 1521
Query: 561 KPGD*VWVHFRKERFPQQRKSKLDDRGDGQFQILEKINDNAYKVDLPGHYNVSATFNVSD 382
PGD VW+H RK+RFP RKSKL R DG F++LEKINDNAYK++LP + VS TFN++D
Sbjct: 1522 APGDLVWLHLRKDRFPNLRKSKLMPRADGPFKVLEKINDNAYKLELPADFGVSPTFNIAD 1581
Query: 381 LSLFDIGDGDSRTGRS 334
L + +G+ D R+
Sbjct: 1582 LKPY-LGEEDELPSRT 1596
>gb|AAX95950.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa
Japonica Group] gi|77550294|gb|ABA93091.1|
retrotransposon protein, putative, Ty3-gypsy subclass
[Oryza sativa Japonica Group]
Length = 901
Score = 218 bits (556), Expect = 2e-54
Identities = 107/194 (55%), Positives = 140/194 (72%), Gaps = 4/194 (2%)
Frame = -2
Query: 921 CHLQTDGQTEVVNRTIGQLLRAILKKKLRQWEECLPHIEFAYNRAPHSTTSHSPFQVVYG 742
CH QTDGQTEVVNRT+G +LRAILKKKL+ EECLPH+EFAYNRA STT SPFQ+VYG
Sbjct: 484 CHPQTDGQTEVVNRTLGTMLRAILKKKLKMSEECLPHVEFAYNRATRSTTKVSPFQIVYG 543
Query: 741 FNPLTPFDLVPLPIDQALSKDASKKANFMKAIHIKVHEAIVNSNKKLVEKRNVG----RR 574
FNP P D++PLP + + DA +A F+ +K+HE ++ +K+ EK + R+
Sbjct: 544 FNPRAPIDILPLPTSERVHNDAKARAEFI----LKMHETTKHTIEKMTEKHRIAGSKDRQ 599
Query: 573 KVVFKPGD*VWVHFRKERFPQQRKSKLDDRGDGQFQILEKINDNAYKVDLPGHYNVSATF 394
+V +P D VW+H RK+RFP+ RKSKL DG F+I+EKINDNAYK++LP + VS TF
Sbjct: 600 EVKLEPSDLVWLHLRKDRFPELRKSKLMPHADGPFKIIEKINDNAYKLELPPEFGVSPTF 659
Query: 393 NVSDLSLFDIGDGD 352
N+SDL + +G+ D
Sbjct: 660 NISDLKPY-LGEED 672
>gb|AAQ56407.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
Length = 1619
Score = 218 bits (556), Expect = 2e-54
Identities = 103/198 (52%), Positives = 136/198 (68%)
Frame = -2
Query: 921 CHLQTDGQTEVVNRTIGQLLRAILKKKLRQWEECLPHIEFAYNRAPHSTTSHSPFQVVYG 742
CH QTDGQTEVVNRT+ +LRA+LKK ++ WEECLPH+EFAYNR+ HSTT PF++VYG
Sbjct: 1282 CHPQTDGQTEVVNRTVSTMLRAVLKKNIKMWEECLPHVEFAYNRSQHSTTKKCPFEIVYG 1341
Query: 741 FNPLTPFDLVPLPIDQALSKDASKKANFMKAIHIKVHEAIVNSNKKLVEKRNVGRRKVVF 562
P P DL+PLP + ++ DA +A M +H E I N K + G++ V F
Sbjct: 1342 LLPRAPIDLLPLPTLERVNFDAKYRAELMLKLHETTKENIERMNIKYKLAGSKGKKHVAF 1401
Query: 561 KPGD*VWVHFRKERFPQQRKSKLDDRGDGQFQILEKINDNAYKVDLPGHYNVSATFNVSD 382
+PGD VW+H RK+RFP RKSKL R DG FQ+L+KINDNAYK++LP + VS TFN++D
Sbjct: 1402 EPGDLVWLHLRKDRFPNLRKSKLPPRADGPFQVLQKINDNAYKLELPADFGVSPTFNIAD 1461
Query: 381 LSLFDIGDGDSRTGRSCE 328
L + +G+ D R+ +
Sbjct: 1462 LKPY-LGEEDELESRTTQ 1478
>dbj|BAA89466.1| gag-pol polyprotein [Oryza sativa Indica Group]
Length = 1587
Score = 217 bits (552), Expect = 6e-54
Identities = 102/198 (51%), Positives = 136/198 (68%)
Frame = -2
Query: 921 CHLQTDGQTEVVNRTIGQLLRAILKKKLRQWEECLPHIEFAYNRAPHSTTSHSPFQVVYG 742
CH QTDGQTEVVNRT+ +LRA+LKK ++ WEECLPH+EFAYNR+ HSTT PF++VYG
Sbjct: 1386 CHPQTDGQTEVVNRTLSTMLRAVLKKNIKMWEECLPHVEFAYNRSQHSTTKKCPFEIVYG 1445
Query: 741 FNPLTPFDLVPLPIDQALSKDASKKANFMKAIHIKVHEAIVNSNKKLVEKRNVGRRKVVF 562
P P DL+PLP + ++ DA +A M +H E I N K + G++ V F
Sbjct: 1446 LLPRAPIDLLPLPTSERVNFDAKYRAELMLKLHETTKENIERMNIKYKLAGSKGKKHVAF 1505
Query: 561 KPGD*VWVHFRKERFPQQRKSKLDDRGDGQFQILEKINDNAYKVDLPGHYNVSATFNVSD 382
+PGD VW+H RK+RFP RKSKL R DG F++L+KINDNAYK++LP + VS TFN++D
Sbjct: 1506 EPGDLVWLHLRKDRFPNLRKSKLLPRADGPFKVLQKINDNAYKLELPADFGVSPTFNIAD 1565
Query: 381 LSLFDIGDGDSRTGRSCE 328
L + +G+ D R+ +
Sbjct: 1566 LKPY-LGEEDELESRTTQ 1582