BLASTX nr result
ID: Catharanthus22_contig00014348
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus22_contig00014348
(345 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ABD28627.2| RNA-directed DNA polymerase (Reverse transcriptas... 92 6e-17
gb|ABO80459.1| RNA-directed DNA polymerase (Reverse transcriptas... 91 1e-16
gb|ABD28505.2| RNA-directed DNA polymerase (Reverse transcriptas... 88 1e-15
emb|CCA65997.1| hypothetical protein [Beta vulgaris subsp. vulga... 87 3e-15
emb|CCA66009.1| hypothetical protein [Beta vulgaris subsp. vulga... 86 4e-15
ref|XP_006490008.1| PREDICTED: uncharacterized protein LOC102624... 85 9e-15
gb|ABW81175.1| non-LTR retrotransposon transposase [Arabidopsis ... 84 2e-14
ref|XP_006480844.1| PREDICTED: putative ribonuclease H protein A... 84 2e-14
gb|EMJ14411.1| hypothetical protein PRUPE_ppb013620mg [Prunus pe... 82 6e-14
emb|CAB10337.1| reverse transcriptase like protein [Arabidopsis ... 80 2e-13
gb|AAF23831.1|AC007234_3 F1E22.12 [Arabidopsis thaliana] 80 3e-13
ref|XP_004289445.1| PREDICTED: putative ribonuclease H protein A... 80 3e-13
gb|EOY02376.1| LINE-type retrotransposon LIb DNA, Insertion at t... 79 5e-13
gb|EOX92867.1| LINE-type retrotransposon LIb DNA, Insertion at t... 79 7e-13
dbj|BAE79385.1| unnamed protein product [Ipomoea batatas] 79 8e-13
dbj|BAE79382.1| unnamed protein product [Ipomoea batatas] 79 8e-13
gb|AAC63844.1| putative non-LTR retroelement reverse transcripta... 75 6e-12
ref|NP_001174443.1| Os05g0434000 [Oryza sativa Japonica Group] g... 75 7e-12
gb|EEC79287.1| hypothetical protein OsI_20089 [Oryza sativa Indi... 75 7e-12
gb|AAT58873.1| hypothetical protein [Oryza sativa Japonica Group] 75 7e-12
>gb|ABD28627.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H
[Medicago truncatula]
Length = 1296
Score = 92.0 bits (227), Expect(2) = 6e-17
Identities = 40/78 (51%), Positives = 58/78 (74%)
Frame = -1
Query: 306 LISLIQLCMSFASLSILWNGEQLENFHPSHGLR*GYPLSPYLFVLCMEALSLSIKKAVSE 127
++ LI C+S A+ S+LWNG ++ F P+HGLR G PLSPYLF+LCME LS++I+ AV +
Sbjct: 604 IVKLIMHCVSSANYSLLWNGNKMPPFKPTHGLRQGDPLSPYLFILCMEKLSVAIQDAVLQ 663
Query: 126 SVWKPLKITRNSPRISHV 73
W+P+ I + P+ISH+
Sbjct: 664 GSWEPIHIINDGPQISHL 681
Score = 20.8 bits (42), Expect(2) = 6e-17
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = -3
Query: 73 IFADDLILFVK 41
+FADD++LF K
Sbjct: 682 LFADDVLLFTK 692
>gb|ABO80459.1| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H
[Medicago truncatula]
Length = 869
Score = 91.3 bits (225), Expect(2) = 1e-16
Identities = 40/82 (48%), Positives = 59/82 (71%)
Frame = -1
Query: 318 FHTNLISLIQLCMSFASLSILWNGEQLENFHPSHGLR*GYPLSPYLFVLCMEALSLSIKK 139
F + I LI C++ ++ S+LWNG + P+HGLR G PLSPYLF++CME LSL+I K
Sbjct: 160 FPDDTIKLIMHCVTSSTFSVLWNGNKWPPIKPTHGLRQGDPLSPYLFIICMEKLSLAINK 219
Query: 138 AVSESVWKPLKITRNSPRISHV 73
AV E W+P++++ +SP +SH+
Sbjct: 220 AVHEGEWEPIRMSASSPPLSHL 241
Score = 20.8 bits (42), Expect(2) = 1e-16
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = -3
Query: 73 IFADDLILFVK 41
+FADD++LF K
Sbjct: 242 LFADDVLLFTK 252
>gb|ABD28505.2| RNA-directed DNA polymerase (Reverse transcriptase);
Polynucleotidyl transferase, Ribonuclease H fold
[Medicago truncatula]
Length = 729
Score = 87.8 bits (216), Expect = 1e-15
Identities = 41/82 (50%), Positives = 55/82 (67%)
Frame = -1
Query: 318 FHTNLISLIQLCMSFASLSILWNGEQLENFHPSHGLR*GYPLSPYLFVLCMEALSLSIKK 139
F + LI++I C+S S I+WNG++ E+F+PS G+R G PLSPYLFV+CME LS I
Sbjct: 28 FPSKLINIIHHCISTPSYKIMWNGDKSESFYPSRGIRQGDPLSPYLFVICMERLSHIIAD 87
Query: 138 AVSESVWKPLKITRNSPRISHV 73
V WKP++ R P ISH+
Sbjct: 88 QVEADYWKPMRAGRYGPPISHL 109
>emb|CCA65997.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1363
Score = 86.7 bits (213), Expect = 3e-15
Identities = 40/83 (48%), Positives = 59/83 (71%)
Frame = -1
Query: 318 FHTNLISLIQLCMSFASLSILWNGEQLENFHPSHGLR*GYPLSPYLFVLCMEALSLSIKK 139
F +LI+LI C+S ++S++WNGE ++F PS G+R G PLSPY+FVLCME LS+ I
Sbjct: 602 FPQSLIALIMDCISSPAISLIWNGEVTQSFSPSRGIRQGDPLSPYIFVLCMERLSMLISD 661
Query: 138 AVSESVWKPLKITRNSPRISHVF 70
+ + WKP+KI+ + +SH+F
Sbjct: 662 RIRDGSWKPIKIS-SDLGVSHIF 683
>emb|CCA66009.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1378
Score = 86.3 bits (212), Expect = 4e-15
Identities = 39/79 (49%), Positives = 56/79 (70%)
Frame = -1
Query: 309 NLISLIQLCMSFASLSILWNGEQLENFHPSHGLR*GYPLSPYLFVLCMEALSLSIKKAVS 130
+L+ ++ C+S A+L ILWNGE +E P+ GLR G PLSPYL+V+CME L+ I + V+
Sbjct: 607 HLVDIVMNCVSSANLQILWNGEPMEKICPTRGLRQGDPLSPYLYVICMERLAHLIDQEVT 666
Query: 129 ESVWKPLKITRNSPRISHV 73
WKP+K +RN P IS++
Sbjct: 667 NGNWKPVKASRNGPPISNL 685
>ref|XP_006490008.1| PREDICTED: uncharacterized protein LOC102624085 [Citrus sinensis]
Length = 1635
Score = 85.1 bits (209), Expect = 9e-15
Identities = 37/81 (45%), Positives = 56/81 (69%)
Frame = -1
Query: 312 TNLISLIQLCMSFASLSILWNGEQLENFHPSHGLR*GYPLSPYLFVLCMEALSLSIKKAV 133
T LI+LI C++ A++++LWNGE F P G+R G PLSPY+FVLC+E LS I +++
Sbjct: 1096 TMLINLIMECITTATMNVLWNGELSSEFCPGRGVRQGDPLSPYIFVLCIERLSHGISRSI 1155
Query: 132 SESVWKPLKITRNSPRISHVF 70
+ WKP+++ R +SH+F
Sbjct: 1156 QQGHWKPIRLARMGTPLSHLF 1176
>gb|ABW81175.1| non-LTR retrotransposon transposase [Arabidopsis cebennensis]
Length = 799
Score = 84.0 bits (206), Expect(2) = 2e-14
Identities = 38/77 (49%), Positives = 52/77 (67%)
Frame = -1
Query: 303 ISLIQLCMSFASLSILWNGEQLENFHPSHGLR*GYPLSPYLFVLCMEALSLSIKKAVSES 124
I+ I C+ ++++LWNGE+ E+F PS GLR G PLSPYLFVLC+E L I AV
Sbjct: 58 INWIMKCVKEPAMTVLWNGEKTESFIPSRGLRQGDPLSPYLFVLCLERLCHQIDLAVGTK 117
Query: 123 VWKPLKITRNSPRISHV 73
WKP+ ++R P +SH+
Sbjct: 118 EWKPISMSRGGPLLSHI 134
Score = 20.4 bits (41), Expect(2) = 2e-14
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = -3
Query: 70 FADDLILFVK 41
FADDLILF +
Sbjct: 136 FADDLILFAE 145
>ref|XP_006480844.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus
sinensis]
Length = 768
Score = 84.0 bits (206), Expect = 2e-14
Identities = 37/79 (46%), Positives = 57/79 (72%)
Frame = -1
Query: 306 LISLIQLCMSFASLSILWNGEQLENFHPSHGLR*GYPLSPYLFVLCMEALSLSIKKAVSE 127
LI LI C++ S++ILW+GE ++F PS G+R G PLSPY+FVLC+E LS I +++ +
Sbjct: 32 LIQLIMECITSTSMNILWHGELTDDFSPSRGVRQGDPLSPYIFVLCVERLSHGIYQSIHQ 91
Query: 126 SVWKPLKITRNSPRISHVF 70
WKP++++R +SH+F
Sbjct: 92 DHWKPIRLSRLGTPLSHLF 110
>gb|EMJ14411.1| hypothetical protein PRUPE_ppb013620mg [Prunus persica]
Length = 993
Score = 82.4 bits (202), Expect = 6e-14
Identities = 40/80 (50%), Positives = 51/80 (63%)
Frame = -1
Query: 309 NLISLIQLCMSFASLSILWNGEQLENFHPSHGLR*GYPLSPYLFVLCMEALSLSIKKAVS 130
+ I LI C+S I NGE + F P +G+R G PLSPYLFVLC+E LS I AV
Sbjct: 815 SFIQLIMQCVSTMRYQICINGELTDPFSPGNGIRQGDPLSPYLFVLCIEKLSHIIVDAVK 874
Query: 129 ESVWKPLKITRNSPRISHVF 70
+WKP+K +RN P +SH+F
Sbjct: 875 RKLWKPIKTSRNGPSVSHLF 894
>emb|CAB10337.1| reverse transcriptase like protein [Arabidopsis thaliana]
gi|7268307|emb|CAB78601.1| reverse transcriptase like
protein [Arabidopsis thaliana]
Length = 929
Score = 80.5 bits (197), Expect(2) = 2e-13
Identities = 36/77 (46%), Positives = 51/77 (66%)
Frame = -1
Query: 303 ISLIQLCMSFASLSILWNGEQLENFHPSHGLR*GYPLSPYLFVLCMEALSLSIKKAVSES 124
I I C++ +S+LWNGE+ ++F P GLR G P+SPYLFVLC+E L I+ AV
Sbjct: 418 IKRIMECVAGPEMSLLWNGEKTDSFTPERGLRQGDPISPYLFVLCIERLCHQIETAVGRG 477
Query: 123 VWKPLKITRNSPRISHV 73
WK + I++ P++SHV
Sbjct: 478 DWKSISISQGGPKVSHV 494
Score = 20.4 bits (41), Expect(2) = 2e-13
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = -3
Query: 70 FADDLILFVK 41
FADDLILF +
Sbjct: 496 FADDLILFAE 505
>gb|AAF23831.1|AC007234_3 F1E22.12 [Arabidopsis thaliana]
Length = 1055
Score = 80.1 bits (196), Expect(2) = 3e-13
Identities = 35/77 (45%), Positives = 52/77 (67%)
Frame = -1
Query: 303 ISLIQLCMSFASLSILWNGEQLENFHPSHGLR*GYPLSPYLFVLCMEALSLSIKKAVSES 124
++ I C+S +S+LWNGE+ F P GLR G LSPYLFVLCME L I+++++
Sbjct: 43 VTWIMQCVSGPDMSLLWNGEKTTPFKPLRGLRQGDLLSPYLFVLCMERLCHLIERSINAK 102
Query: 123 VWKPLKITRNSPRISHV 73
WKP+ ++R P++SH+
Sbjct: 103 QWKPINLSRGGPKLSHI 119
Score = 20.4 bits (41), Expect(2) = 3e-13
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = -3
Query: 70 FADDLILFVK 41
FADDLILF +
Sbjct: 121 FADDLILFAE 130
>ref|XP_004289445.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
vesca subsp. vesca]
Length = 719
Score = 80.1 bits (196), Expect = 3e-13
Identities = 36/83 (43%), Positives = 52/83 (62%)
Frame = -1
Query: 318 FHTNLISLIQLCMSFASLSILWNGEQLENFHPSHGLR*GYPLSPYLFVLCMEALSLSIKK 139
F + L+ LI C++ S I +NGE +F G+R G PLSPY+FVLCME LS I
Sbjct: 213 FPSTLVKLIMSCITTTSFQICFNGELTSSFKAQRGIRQGDPLSPYIFVLCMEKLSHLINS 272
Query: 138 AVSESVWKPLKITRNSPRISHVF 70
V WKP++ +++ P++SH+F
Sbjct: 273 VVDMGYWKPVRASQSGPKVSHLF 295
>gb|EOY02376.1| LINE-type retrotransposon LIb DNA, Insertion at the S11 site-like
protein [Theobroma cacao]
Length = 620
Score = 79.3 bits (194), Expect = 5e-13
Identities = 35/80 (43%), Positives = 55/80 (68%)
Frame = -1
Query: 309 NLISLIQLCMSFASLSILWNGEQLENFHPSHGLR*GYPLSPYLFVLCMEALSLSIKKAVS 130
N+I ++ + S ILWNG E F PS G+R G PL+PYLFVLC+E L+ IK+AV
Sbjct: 178 NIIDILIRSWNAHSSHILWNGTCFEKFFPSRGVRLGDPLAPYLFVLCIEKLAHGIKQAVE 237
Query: 129 ESVWKPLKITRNSPRISHVF 70
+ +WKP+++ ++ P ++++F
Sbjct: 238 QEMWKPIRLGKHGPPLTYLF 257
>gb|EOX92867.1| LINE-type retrotransposon LIb DNA, Insertion at the S11 site-like
protein [Theobroma cacao]
Length = 780
Score = 78.6 bits (192), Expect(2) = 7e-13
Identities = 37/64 (57%), Positives = 47/64 (73%)
Frame = -1
Query: 261 ILWNGEQLENFHPSHGLR*GYPLSPYLFVLCMEALSLSIKKAVSESVWKPLKITRNSPRI 82
ILWNG E+F P G+R G PLSPYLFVLC+E LS +I AV + +WKP+K+ R+ P I
Sbjct: 667 ILWNGMPSESFSPYRGVRQGDPLSPYLFVLCIERLSHAINIAVVQGLWKPIKLGRHYPLI 726
Query: 81 SHVF 70
SH+F
Sbjct: 727 SHLF 730
Score = 20.4 bits (41), Expect(2) = 7e-13
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = -3
Query: 70 FADDLILFVK 41
FADDLILF +
Sbjct: 731 FADDLILFAE 740
>dbj|BAE79385.1| unnamed protein product [Ipomoea batatas]
Length = 1366
Score = 78.6 bits (192), Expect = 8e-13
Identities = 41/83 (49%), Positives = 51/83 (61%)
Frame = -1
Query: 318 FHTNLISLIQLCMSFASLSILWNGEQLENFHPSHGLR*GYPLSPYLFVLCMEALSLSIKK 139
F LI LI + +SL+ILWNG +L F P GLR G PL+PYLF L ME L+ I+
Sbjct: 602 FPRRLIDLILFSLQESSLAILWNGGRLPPFKPGRGLRQGDPLAPYLFNLVMERLAHDIQT 661
Query: 138 AVSESVWKPLKITRNSPRISHVF 70
V+ WKP+ ITR ISH+F
Sbjct: 662 RVNARTWKPVHITRGGTGISHLF 684
>dbj|BAE79382.1| unnamed protein product [Ipomoea batatas]
Length = 1366
Score = 78.6 bits (192), Expect = 8e-13
Identities = 41/83 (49%), Positives = 51/83 (61%)
Frame = -1
Query: 318 FHTNLISLIQLCMSFASLSILWNGEQLENFHPSHGLR*GYPLSPYLFVLCMEALSLSIKK 139
F LI LI + +SL+ILWNG +L F P GLR G PL+PYLF L ME L+ I+
Sbjct: 602 FPRRLIDLILFSLQESSLAILWNGGRLPPFKPGRGLRQGDPLAPYLFNLVMERLAHDIQT 661
Query: 138 AVSESVWKPLKITRNSPRISHVF 70
V+ WKP+ ITR ISH+F
Sbjct: 662 RVNARTWKPVHITRGGTGISHLF 684
>gb|AAC63844.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1231
Score = 75.5 bits (184), Expect(2) = 6e-12
Identities = 33/66 (50%), Positives = 48/66 (72%)
Frame = -1
Query: 270 SLSILWNGEQLENFHPSHGLR*GYPLSPYLFVLCMEALSLSIKKAVSESVWKPLKITRNS 91
S+S+LWNGE+ ++F P+ GLR G PLSPYLFVLC+E L I+ +V + WKP+ ++
Sbjct: 477 SMSVLWNGERTDSFVPARGLRQGDPLSPYLFVLCLERLCHLIEASVGKREWKPIAVSCGG 536
Query: 90 PRISHV 73
++SHV
Sbjct: 537 SKLSHV 542
Score = 20.4 bits (41), Expect(2) = 6e-12
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = -3
Query: 70 FADDLILFVK 41
FADDLILF +
Sbjct: 544 FADDLILFAE 553
>ref|NP_001174443.1| Os05g0434000 [Oryza sativa Japonica Group]
gi|255676397|dbj|BAH93171.1| Os05g0434000 [Oryza sativa
Japonica Group]
Length = 1478
Score = 75.5 bits (184), Expect = 7e-12
Identities = 33/83 (39%), Positives = 54/83 (65%)
Frame = -1
Query: 318 FHTNLISLIQLCMSFASLSILWNGEQLENFHPSHGLR*GYPLSPYLFVLCMEALSLSIKK 139
FH ++L+ C++ + I NGE + +P GLR G PLSPYLF++C E LS ++K
Sbjct: 946 FHDQWVNLVMKCVTSVTYRIKINGEHSDQIYPQRGLRQGDPLSPYLFIICAEGLSALLQK 1005
Query: 138 AVSESVWKPLKITRNSPRISHVF 70
A ++ + +K+ R++PRI+H+F
Sbjct: 1006 AQADGKIEGIKVCRDTPRINHLF 1028
>gb|EEC79287.1| hypothetical protein OsI_20089 [Oryza sativa Indica Group]
Length = 892
Score = 75.5 bits (184), Expect = 7e-12
Identities = 33/83 (39%), Positives = 54/83 (65%)
Frame = -1
Query: 318 FHTNLISLIQLCMSFASLSILWNGEQLENFHPSHGLR*GYPLSPYLFVLCMEALSLSIKK 139
FH ++L+ C++ + I NGE + +P GLR G PLSPYLF++C E LS ++K
Sbjct: 681 FHDQWVNLVMKCVTSVTYRIKINGEHSDQIYPQRGLRQGDPLSPYLFIICAEGLSALLQK 740
Query: 138 AVSESVWKPLKITRNSPRISHVF 70
A ++ + +K+ R++PRI+H+F
Sbjct: 741 AQADGKIEGIKVCRDTPRINHLF 763
>gb|AAT58873.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 1264
Score = 75.5 bits (184), Expect = 7e-12
Identities = 33/83 (39%), Positives = 54/83 (65%)
Frame = -1
Query: 318 FHTNLISLIQLCMSFASLSILWNGEQLENFHPSHGLR*GYPLSPYLFVLCMEALSLSIKK 139
FH ++L+ C++ + I NGE + +P GLR G PLSPYLF++C E LS ++K
Sbjct: 946 FHDQWVNLVMKCVTSVTYRIKINGEHSDQIYPQRGLRQGDPLSPYLFIICAEGLSALLQK 1005
Query: 138 AVSESVWKPLKITRNSPRISHVF 70
A ++ + +K+ R++PRI+H+F
Sbjct: 1006 AQADGKIEGIKVCRDTPRINHLF 1028