BLASTX nr result

ID: Catharanthus22_contig00013944 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Catharanthus22_contig00013944
         (722 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_005691039.1| PREDICTED: proteoglycan 4 isoform X3 [Capra ...    57   8e-06
ref|XP_005691038.1| PREDICTED: proteoglycan 4 isoform X2 [Capra ...    57   8e-06
ref|XP_005691037.1| PREDICTED: proteoglycan 4 isoform X1 [Capra ...    57   8e-06

>ref|XP_005691039.1| PREDICTED: proteoglycan 4 isoform X3 [Capra hircus]
          Length = 1110

 Score = 56.6 bits (135), Expect = 8e-06
 Identities = 44/184 (23%), Positives = 62/184 (33%), Gaps = 6/184 (3%)
 Frame = +2

Query: 2   TAPASPTPTNKKTAENQPSSHLXXXXXXXXXXXXRPPL------SPQGVTSTQEPLPQSQ 163
           T P  PTPT K+ A   P                + P        P   T+T+EP P + 
Sbjct: 210 TTPKKPTPTTKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTTTKEPAPTTTTKEPAPTTP 269

Query: 164 ESRTESQPSSPYNVTSKSRVSSQPXXXXXXXXXXXXXXXXXXXXXXXXXXXTSLFSTPSQ 343
           +    + P  P   T K    + P                           T+    P+ 
Sbjct: 270 KEPAPTTPKEPAPTTPKEPAPTSPKEPAP----------------------TTTTKEPAP 307

Query: 344 TGAPKSPTLRTPSQPRSQSRKDSRPAGQTPSNSPSSKAAQGQPTTATIIQSTSPSKAEPR 523
           T  PK P   TP +P   + K+  P   T   +P++   +  PTT      TSP +  P 
Sbjct: 308 TTTPKEPAPTTPKEPAPTTPKEPAPTTTTKEPAPTTTPKEPAPTTPKEPAPTSPKEPAP- 366

Query: 524 LTPK 535
            TPK
Sbjct: 367 TTPK 370


>ref|XP_005691038.1| PREDICTED: proteoglycan 4 isoform X2 [Capra hircus]
          Length = 1151

 Score = 56.6 bits (135), Expect = 8e-06
 Identities = 44/184 (23%), Positives = 62/184 (33%), Gaps = 6/184 (3%)
 Frame = +2

Query: 2   TAPASPTPTNKKTAENQPSSHLXXXXXXXXXXXXRPPL------SPQGVTSTQEPLPQSQ 163
           T P  PTPT K+ A   P                + P        P   T+T+EP P + 
Sbjct: 251 TTPKKPTPTTKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTTTKEPAPTTTTKEPAPTTP 310

Query: 164 ESRTESQPSSPYNVTSKSRVSSQPXXXXXXXXXXXXXXXXXXXXXXXXXXXTSLFSTPSQ 343
           +    + P  P   T K    + P                           T+    P+ 
Sbjct: 311 KEPAPTTPKEPAPTTPKEPAPTSPKEPAP----------------------TTTTKEPAP 348

Query: 344 TGAPKSPTLRTPSQPRSQSRKDSRPAGQTPSNSPSSKAAQGQPTTATIIQSTSPSKAEPR 523
           T  PK P   TP +P   + K+  P   T   +P++   +  PTT      TSP +  P 
Sbjct: 349 TTTPKEPAPTTPKEPAPTTPKEPAPTTTTKEPAPTTTPKEPAPTTPKEPAPTSPKEPAP- 407

Query: 524 LTPK 535
            TPK
Sbjct: 408 TTPK 411


>ref|XP_005691037.1| PREDICTED: proteoglycan 4 isoform X1 [Capra hircus]
          Length = 1242

 Score = 56.6 bits (135), Expect = 8e-06
 Identities = 44/184 (23%), Positives = 62/184 (33%), Gaps = 6/184 (3%)
 Frame = +2

Query: 2   TAPASPTPTNKKTAENQPSSHLXXXXXXXXXXXXRPPL------SPQGVTSTQEPLPQSQ 163
           T P  PTPT K+ A   P                + P        P   T+T+EP P + 
Sbjct: 342 TTPKKPTPTTKEPAPTTPKEPAPTTPKEPAPTTPKEPAPTTTTKEPAPTTTTKEPAPTTP 401

Query: 164 ESRTESQPSSPYNVTSKSRVSSQPXXXXXXXXXXXXXXXXXXXXXXXXXXXTSLFSTPSQ 343
           +    + P  P   T K    + P                           T+    P+ 
Sbjct: 402 KEPAPTTPKEPAPTTPKEPAPTSPKEPAP----------------------TTTTKEPAP 439

Query: 344 TGAPKSPTLRTPSQPRSQSRKDSRPAGQTPSNSPSSKAAQGQPTTATIIQSTSPSKAEPR 523
           T  PK P   TP +P   + K+  P   T   +P++   +  PTT      TSP +  P 
Sbjct: 440 TTTPKEPAPTTPKEPAPTTPKEPAPTTTTKEPAPTTTPKEPAPTTPKEPAPTSPKEPAP- 498

Query: 524 LTPK 535
            TPK
Sbjct: 499 TTPK 502


Top