BLASTX nr result
ID: Catharanthus22_contig00013849
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus22_contig00013849
(255 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004229099.1| PREDICTED: uncharacterized protein LOC101259... 128 7e-28
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-... 128 7e-28
gb|AAM08562.1|AC092749_15 Putative retroelement [Oryza sativa Ja... 128 7e-28
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118... 128 7e-28
gb|AAP53216.2| retrotransposon protein, putative, Ty1-copia subc... 128 7e-28
emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group] 128 7e-28
emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group] 128 7e-28
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group] 128 7e-28
emb|CAD40121.3| OSJNBa0061C06.5 [Oryza sativa Japonica Group] 128 7e-28
gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group] 128 9e-28
gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subc... 128 9e-28
gb|ABA99474.1| retrotransposon protein, putative, Ty1-copia subc... 127 2e-27
gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group] 124 1e-26
ref|XP_006651032.1| PREDICTED: uncharacterized protein LOC102707... 124 2e-26
gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa] 123 2e-26
gb|AAT01387.1| putative polyprotein [Oryza sativa Japonica Group... 123 3e-26
pir||T03662 reverse transcriptase homolog - rice copia-like retr... 122 4e-26
gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subc... 122 4e-26
gb|AAT44257.1| putative polyprotein [Oryza sativa Japonica Group] 122 4e-26
emb|CAI44659.1| OSJNBa0061C06.9 [Oryza sativa Japonica Group] 122 5e-26
>ref|XP_004229099.1| PREDICTED: uncharacterized protein LOC101259364 [Solanum
lycopersicum]
Length = 505
Score = 128 bits (322), Expect = 7e-28
Identities = 58/77 (75%), Positives = 66/77 (85%)
Frame = -3
Query: 253 LEQLDVKTAFLHGELEETIYMRQPPGFEEKGKENMACLLKKSLYGLKQSPRQWYKRFDSF 74
LEQLDVKTAFLHGELEE IYM QP GF+ GKEN C LKKSLYGLKQSPRQWYKRFDS+
Sbjct: 224 LEQLDVKTAFLHGELEEEIYMTQPDGFQVPGKENHVCKLKKSLYGLKQSPRQWYKRFDSY 283
Query: 73 MLKAGFIKSNYDSCLYF 23
M+K G+ +S+YD C+Y+
Sbjct: 284 MVKLGYTRSSYDCCVYY 300
>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group] gi|77548751|gb|ABA91548.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 2340
Score = 128 bits (322), Expect = 7e-28
Identities = 60/76 (78%), Positives = 64/76 (84%)
Frame = -3
Query: 253 LEQLDVKTAFLHGELEETIYMRQPPGFEEKGKENMACLLKKSLYGLKQSPRQWYKRFDSF 74
LEQ+DVKTAFLHGELEE IYM QP GF GKEN+ C LKKSLYGLKQSPRQWYKRFDSF
Sbjct: 1131 LEQMDVKTAFLHGELEEDIYMEQPKGFVVPGKENLVCRLKKSLYGLKQSPRQWYKRFDSF 1190
Query: 73 MLKAGFIKSNYDSCLY 26
ML F +SNYDSC+Y
Sbjct: 1191 MLSQKFRRSNYDSCVY 1206
>gb|AAM08562.1|AC092749_15 Putative retroelement [Oryza sativa Japonica Group]
gi|20087076|gb|AAM10749.1|AC112514_2 Putative
retroelement [Oryza sativa Japonica Group]
Length = 1225
Score = 128 bits (322), Expect = 7e-28
Identities = 60/76 (78%), Positives = 64/76 (84%)
Frame = -3
Query: 253 LEQLDVKTAFLHGELEETIYMRQPPGFEEKGKENMACLLKKSLYGLKQSPRQWYKRFDSF 74
LEQ+DVKTAFLHGELEE IYM QP GF GKEN+ C LKKSLYGLKQSPRQWYKRFDSF
Sbjct: 860 LEQMDVKTAFLHGELEEDIYMEQPEGFVVPGKENLVCRLKKSLYGLKQSPRQWYKRFDSF 919
Query: 73 MLKAGFIKSNYDSCLY 26
ML F +SNYDSC+Y
Sbjct: 920 MLSQKFRRSNYDSCVY 935
>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
copia LTR rider [Solanum lycopersicum]
Length = 1307
Score = 128 bits (322), Expect = 7e-28
Identities = 58/77 (75%), Positives = 66/77 (85%)
Frame = -3
Query: 253 LEQLDVKTAFLHGELEETIYMRQPPGFEEKGKENMACLLKKSLYGLKQSPRQWYKRFDSF 74
LEQLDVKTAFLHGELEE IYM QP GF+ GKEN C LKKSLYGLKQSPRQWYKRFDS+
Sbjct: 899 LEQLDVKTAFLHGELEEEIYMTQPDGFQVPGKENHVCKLKKSLYGLKQSPRQWYKRFDSY 958
Query: 73 MLKAGFIKSNYDSCLYF 23
M+K G+ +S+YD C+Y+
Sbjct: 959 MVKLGYTRSSYDCCVYY 975
>gb|AAP53216.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1262
Score = 128 bits (322), Expect = 7e-28
Identities = 60/76 (78%), Positives = 64/76 (84%)
Frame = -3
Query: 253 LEQLDVKTAFLHGELEETIYMRQPPGFEEKGKENMACLLKKSLYGLKQSPRQWYKRFDSF 74
LEQ+DVKTAFLHGELEE IYM QP GF GKEN+ C LKKSLYGLKQSPRQWYKRFDSF
Sbjct: 897 LEQMDVKTAFLHGELEEDIYMEQPEGFVVPGKENLVCRLKKSLYGLKQSPRQWYKRFDSF 956
Query: 73 MLKAGFIKSNYDSCLY 26
ML F +SNYDSC+Y
Sbjct: 957 MLSQKFRRSNYDSCVY 972
>emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group]
Length = 1037
Score = 128 bits (322), Expect = 7e-28
Identities = 60/76 (78%), Positives = 64/76 (84%)
Frame = -3
Query: 253 LEQLDVKTAFLHGELEETIYMRQPPGFEEKGKENMACLLKKSLYGLKQSPRQWYKRFDSF 74
LEQ+DVKTAFLHGELEE IYM QP GF GKEN+ C LKKSLYGLKQSPRQWYKRFDSF
Sbjct: 682 LEQMDVKTAFLHGELEEDIYMEQPEGFVVPGKENLVCRLKKSLYGLKQSPRQWYKRFDSF 741
Query: 73 MLKAGFIKSNYDSCLY 26
ML F +SNYDSC+Y
Sbjct: 742 MLSQKFRRSNYDSCVY 757
>emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group]
Length = 1205
Score = 128 bits (322), Expect = 7e-28
Identities = 60/76 (78%), Positives = 64/76 (84%)
Frame = -3
Query: 253 LEQLDVKTAFLHGELEETIYMRQPPGFEEKGKENMACLLKKSLYGLKQSPRQWYKRFDSF 74
LEQ+DVKTAFLHGELEE IYM QP GF GKEN+ C LKKSLYGLKQSPRQWYKRFDSF
Sbjct: 850 LEQMDVKTAFLHGELEEDIYMEQPEGFVVPGKENLVCRLKKSLYGLKQSPRQWYKRFDSF 909
Query: 73 MLKAGFIKSNYDSCLY 26
ML F +SNYDSC+Y
Sbjct: 910 MLSQKFRRSNYDSCVY 925
>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1241
Score = 128 bits (322), Expect = 7e-28
Identities = 60/76 (78%), Positives = 64/76 (84%)
Frame = -3
Query: 253 LEQLDVKTAFLHGELEETIYMRQPPGFEEKGKENMACLLKKSLYGLKQSPRQWYKRFDSF 74
LEQ+DVKTAFLHGELEE IYM QP GF GKEN+ C LKKSLYGLKQSPRQWYKRFDSF
Sbjct: 833 LEQMDVKTAFLHGELEEDIYMEQPEGFVVPGKENLVCRLKKSLYGLKQSPRQWYKRFDSF 892
Query: 73 MLKAGFIKSNYDSCLY 26
ML F +SNYDSC+Y
Sbjct: 893 MLSQKFRRSNYDSCVY 908
>emb|CAD40121.3| OSJNBa0061C06.5 [Oryza sativa Japonica Group]
Length = 621
Score = 128 bits (322), Expect = 7e-28
Identities = 60/76 (78%), Positives = 64/76 (84%)
Frame = -3
Query: 253 LEQLDVKTAFLHGELEETIYMRQPPGFEEKGKENMACLLKKSLYGLKQSPRQWYKRFDSF 74
LEQ+DVKTAFLHGELEE IYM QP GF GKEN+ C LKKSLYGLKQSPRQWYKRFDSF
Sbjct: 310 LEQMDVKTAFLHGELEEDIYMEQPEGFVVPGKENLVCRLKKSLYGLKQSPRQWYKRFDSF 369
Query: 73 MLKAGFIKSNYDSCLY 26
ML F +SNYDSC+Y
Sbjct: 370 MLSQKFRRSNYDSCVY 385
>gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1280
Score = 128 bits (321), Expect = 9e-28
Identities = 60/76 (78%), Positives = 64/76 (84%)
Frame = -3
Query: 253 LEQLDVKTAFLHGELEETIYMRQPPGFEEKGKENMACLLKKSLYGLKQSPRQWYKRFDSF 74
LEQ+DVKTAFLHGELEE IYM QP GF GKEN+ C LKKSLYGLKQSPRQWYKRFDSF
Sbjct: 959 LEQMDVKTAFLHGELEEDIYMEQPEGFVVLGKENLVCRLKKSLYGLKQSPRQWYKRFDSF 1018
Query: 73 MLKAGFIKSNYDSCLY 26
ML F +SNYDSC+Y
Sbjct: 1019 MLSQKFRRSNYDSCVY 1034
>gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1312
Score = 128 bits (321), Expect = 9e-28
Identities = 60/76 (78%), Positives = 64/76 (84%)
Frame = -3
Query: 253 LEQLDVKTAFLHGELEETIYMRQPPGFEEKGKENMACLLKKSLYGLKQSPRQWYKRFDSF 74
LEQ+DVKTAFLHGELEE IYM QP GF GKEN+ C LKKSLYGLKQSPRQWYKRFDSF
Sbjct: 959 LEQMDVKTAFLHGELEEDIYMEQPEGFVVLGKENLVCRLKKSLYGLKQSPRQWYKRFDSF 1018
Query: 73 MLKAGFIKSNYDSCLY 26
ML F +SNYDSC+Y
Sbjct: 1019 MLSQKFRRSNYDSCVY 1034
>gb|ABA99474.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 983
Score = 127 bits (319), Expect = 2e-27
Identities = 59/76 (77%), Positives = 64/76 (84%)
Frame = -3
Query: 253 LEQLDVKTAFLHGELEETIYMRQPPGFEEKGKENMACLLKKSLYGLKQSPRQWYKRFDSF 74
LEQ+DVKTAFLHGELEE IYM QP GF GKEN+ C LKKSLYGLKQSPRQWYKRFDSF
Sbjct: 666 LEQMDVKTAFLHGELEEDIYMEQPEGFVVPGKENLVCRLKKSLYGLKQSPRQWYKRFDSF 725
Query: 73 MLKAGFIKSNYDSCLY 26
ML F +SNYD+C+Y
Sbjct: 726 MLSQKFRRSNYDNCVY 741
>gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1243
Score = 124 bits (312), Expect = 1e-26
Identities = 59/76 (77%), Positives = 63/76 (82%)
Frame = -3
Query: 253 LEQLDVKTAFLHGELEETIYMRQPPGFEEKGKENMACLLKKSLYGLKQSPRQWYKRFDSF 74
LEQ++VKTAFLHGELEE IYM QP GF GKEN+ C LKKSLYGLKQSPRQWYKRFDSF
Sbjct: 896 LEQMNVKTAFLHGELEEDIYMEQPEGFVVPGKENLVCRLKKSLYGLKQSPRQWYKRFDSF 955
Query: 73 MLKAGFIKSNYDSCLY 26
ML F SNYDSC+Y
Sbjct: 956 MLSQKFRISNYDSCVY 971
>ref|XP_006651032.1| PREDICTED: uncharacterized protein LOC102707106 [Oryza brachyantha]
Length = 1773
Score = 124 bits (310), Expect = 2e-26
Identities = 58/76 (76%), Positives = 62/76 (81%)
Frame = -3
Query: 253 LEQLDVKTAFLHGELEETIYMRQPPGFEEKGKENMACLLKKSLYGLKQSPRQWYKRFDSF 74
LEQLDVKTAFLHGELEE IYM QP GF GKEN+ C L KSLYGLKQSPRQWYKRFDSF
Sbjct: 771 LEQLDVKTAFLHGELEEDIYMEQPEGFVVPGKENLVCRLDKSLYGLKQSPRQWYKRFDSF 830
Query: 73 MLKAGFIKSNYDSCLY 26
ML F +S +DSC+Y
Sbjct: 831 MLSQNFKRSQFDSCVY 846
>gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]
Length = 1297
Score = 123 bits (309), Expect = 2e-26
Identities = 54/77 (70%), Positives = 64/77 (83%)
Frame = -3
Query: 253 LEQLDVKTAFLHGELEETIYMRQPPGFEEKGKENMACLLKKSLYGLKQSPRQWYKRFDSF 74
+EQ+DVKTAFLHG+LEE IYM QP GF E GKEN+ C LKKSLYGLKQSPRQWYK FD++
Sbjct: 890 IEQMDVKTAFLHGDLEEDIYMSQPEGFVETGKENLVCRLKKSLYGLKQSPRQWYKPFDTY 949
Query: 73 MLKAGFIKSNYDSCLYF 23
MLK G+ + YD C+Y+
Sbjct: 950 MLKIGYTRCQYDCCVYY 966
>gb|AAT01387.1| putative polyprotein [Oryza sativa Japonica Group]
gi|48475101|gb|AAT44170.1| putative polyprotein [Oryza
sativa Japonica Group]
Length = 1175
Score = 123 bits (308), Expect = 3e-26
Identities = 60/82 (73%), Positives = 65/82 (79%)
Frame = -3
Query: 253 LEQLDVKTAFLHGELEETIYMRQPPGFEEKGKENMACLLKKSLYGLKQSPRQWYKRFDSF 74
LEQLDVKTAFLHGELEE IYM QP GF GKE+ C LK+SLYGLKQSPRQWYKRFDSF
Sbjct: 767 LEQLDVKTAFLHGELEEEIYMDQPEGFIVPGKEDYVCKLKRSLYGLKQSPRQWYKRFDSF 826
Query: 73 MLKAGFIKSNYDSCLYFCGNNV 8
ML GF +S +DSC+Y NV
Sbjct: 827 MLSHGFKRSEFDSCVYIKFVNV 848
>pir||T03662 reverse transcriptase homolog - rice copia-like retrotransposon
Rtr21 (fragment) gi|1419127|emb|CAA99752.1| reverse
transcriptase [Oryza sativa Japonica Group]
Length = 92
Score = 122 bits (307), Expect = 4e-26
Identities = 57/74 (77%), Positives = 62/74 (83%)
Frame = -3
Query: 247 QLDVKTAFLHGELEETIYMRQPPGFEEKGKENMACLLKKSLYGLKQSPRQWYKRFDSFML 68
Q+DVKTAFLHGELEE IYM QP GF GKEN+ C LKKSLYGLKQSPRQW+KRFDSFML
Sbjct: 1 QMDVKTAFLHGELEEDIYMEQPEGFVIPGKENLVCRLKKSLYGLKQSPRQWHKRFDSFML 60
Query: 67 KAGFIKSNYDSCLY 26
F +SNYDSC+Y
Sbjct: 61 SQEFRRSNYDSCVY 74
>gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1278
Score = 122 bits (307), Expect = 4e-26
Identities = 58/76 (76%), Positives = 63/76 (82%)
Frame = -3
Query: 253 LEQLDVKTAFLHGELEETIYMRQPPGFEEKGKENMACLLKKSLYGLKQSPRQWYKRFDSF 74
LEQLDVKTAFLHGELEE IYM QP GF GKE+ C LK+SLYGLKQSPRQWYKRFDSF
Sbjct: 914 LEQLDVKTAFLHGELEEEIYMDQPEGFIVPGKEDYVCKLKRSLYGLKQSPRQWYKRFDSF 973
Query: 73 MLKAGFIKSNYDSCLY 26
ML GF +S +DSC+Y
Sbjct: 974 MLSHGFKRSEFDSCVY 989
>gb|AAT44257.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1211
Score = 122 bits (307), Expect = 4e-26
Identities = 58/76 (76%), Positives = 62/76 (81%)
Frame = -3
Query: 253 LEQLDVKTAFLHGELEETIYMRQPPGFEEKGKENMACLLKKSLYGLKQSPRQWYKRFDSF 74
LEQ+DVKTAFLHGELEE IYM QP GF GKEN+ LKKSLYGLKQSPRQWYKRFDSF
Sbjct: 803 LEQMDVKTAFLHGELEEDIYMEQPEGFVVPGKENLVYRLKKSLYGLKQSPRQWYKRFDSF 862
Query: 73 MLKAGFIKSNYDSCLY 26
M F +SNYDSC+Y
Sbjct: 863 MFSQKFRRSNYDSCVY 878
>emb|CAI44659.1| OSJNBa0061C06.9 [Oryza sativa Japonica Group]
Length = 1007
Score = 122 bits (306), Expect = 5e-26
Identities = 58/76 (76%), Positives = 62/76 (81%)
Frame = -3
Query: 253 LEQLDVKTAFLHGELEETIYMRQPPGFEEKGKENMACLLKKSLYGLKQSPRQWYKRFDSF 74
LEQ+DVKTAFLHGELEE IYM Q GF GKEN+ C LKKSLYGLKQS RQWYKRFDSF
Sbjct: 706 LEQMDVKTAFLHGELEEDIYMEQSEGFVVPGKENLVCRLKKSLYGLKQSSRQWYKRFDSF 765
Query: 73 MLKAGFIKSNYDSCLY 26
ML F +SNYDSC+Y
Sbjct: 766 MLSQKFRRSNYDSCVY 781