BLASTX nr result
ID: Catharanthus22_contig00013848
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus22_contig00013848
(331 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EOY00528.1| RNA polymerases N / 8 kDa subunit [Theobroma cacao] 146 3e-33
ref|XP_002326311.1| predicted protein [Populus trichocarpa] gi|5... 146 3e-33
ref|XP_006483895.1| PREDICTED: DNA-directed RNA polymerase subun... 144 1e-32
gb|EMJ27037.1| hypothetical protein PRUPE_ppa014395mg [Prunus pe... 144 2e-32
ref|XP_004242416.1| PREDICTED: DNA-directed RNA polymerases I, I... 143 2e-32
ref|XP_003578831.1| PREDICTED: DNA-directed RNA polymerases I, I... 143 2e-32
ref|XP_002263065.1| PREDICTED: DNA-directed RNA polymerases I, I... 143 2e-32
ref|XP_004297393.1| PREDICTED: DNA-directed RNA polymerases I, I... 142 4e-32
ref|XP_006828771.1| hypothetical protein AMTR_s00001p00093860 [A... 142 5e-32
ref|NP_001067421.1| Os11g0194800 [Oryza sativa Japonica Group] g... 142 5e-32
gb|ABK20909.1| unknown [Picea sitchensis] gi|116781551|gb|ABK221... 142 5e-32
gb|ABF70104.1| DNA-directed RNA polymerase II 8.2 kDa polypeptid... 142 5e-32
gb|EMS59971.1| DNA-directed RNA polymerases I, II, and III subun... 141 8e-32
gb|AFK43820.1| unknown [Medicago truncatula] 141 8e-32
dbj|BAJ94836.1| predicted protein [Hordeum vulgare subsp. vulgar... 141 8e-32
ref|XP_004135479.1| PREDICTED: DNA-directed RNA polymerases I, I... 141 1e-31
ref|XP_003522765.1| PREDICTED: DNA-directed RNA polymerase subun... 141 1e-31
ref|NP_001066312.1| Os12g0180400 [Oryza sativa Japonica Group] g... 141 1e-31
ref|XP_006391977.1| hypothetical protein EUTSA_v10023792mg [Eutr... 140 1e-31
ref|XP_002303467.2| DNA-directed RNA polymerase II 8.2 kDa polyp... 140 1e-31
>gb|EOY00528.1| RNA polymerases N / 8 kDa subunit [Theobroma cacao]
Length = 113
Score = 146 bits (368), Expect = 3e-33
Identities = 68/76 (89%), Positives = 72/76 (94%)
Frame = -2
Query: 243 QKKSFLKMIIPVRCFTCGKVIGNKWDSYLDLLQADYPEGDALDALGLVRYCCRRMLMTHV 64
Q++ +MIIPVRCFTCGKVIGNKWD+YLDLLQADY EGDALDALGLVRYCCRRMLMTHV
Sbjct: 36 QEQELKRMIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHV 95
Query: 63 DLIEKLLNYNTLEKSE 16
DLIEKLLNYNTLEKSE
Sbjct: 96 DLIEKLLNYNTLEKSE 111
>ref|XP_002326311.1| predicted protein [Populus trichocarpa]
gi|566176261|ref|XP_006381558.1| hypothetical protein
POPTR_0006s13850g [Populus trichocarpa]
gi|118486243|gb|ABK94963.1| unknown [Populus
trichocarpa] gi|550336264|gb|ERP59355.1| hypothetical
protein POPTR_0006s13850g [Populus trichocarpa]
Length = 71
Score = 146 bits (368), Expect = 3e-33
Identities = 68/71 (95%), Positives = 70/71 (98%)
Frame = -2
Query: 222 MIIPVRCFTCGKVIGNKWDSYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 43
MIIPVRCFTCGKVIGNKWD+YLDLLQADY EGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
Query: 42 NYNTLEKSEGT 10
NYNTLEKSEG+
Sbjct: 61 NYNTLEKSEGS 71
>ref|XP_006483895.1| PREDICTED: DNA-directed RNA polymerase subunit 10-like protein-like
[Citrus sinensis]
Length = 71
Score = 144 bits (363), Expect = 1e-32
Identities = 66/69 (95%), Positives = 69/69 (100%)
Frame = -2
Query: 222 MIIPVRCFTCGKVIGNKWDSYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 43
MIIPVRCFTCGKVIGNKWD+YLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
Query: 42 NYNTLEKSE 16
NYNTL+KS+
Sbjct: 61 NYNTLDKSD 69
>gb|EMJ27037.1| hypothetical protein PRUPE_ppa014395mg [Prunus persica]
Length = 71
Score = 144 bits (362), Expect = 2e-32
Identities = 67/71 (94%), Positives = 69/71 (97%)
Frame = -2
Query: 222 MIIPVRCFTCGKVIGNKWDSYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 43
MIIPVRCFTCGKVIGNKWD+YLDLLQADY EGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
Query: 42 NYNTLEKSEGT 10
NYNTLEKSE +
Sbjct: 61 NYNTLEKSENS 71
>ref|XP_004242416.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC5-like isoform 2 [Solanum lycopersicum]
gi|565372203|ref|XP_006352686.1| PREDICTED: DNA-directed
RNA polymerases I, II, and III subunit RPABC5-like
[Solanum tuberosum]
Length = 71
Score = 143 bits (361), Expect = 2e-32
Identities = 67/71 (94%), Positives = 68/71 (95%)
Frame = -2
Query: 222 MIIPVRCFTCGKVIGNKWDSYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 43
MIIPVRCFTCGKVIGNKWD YLDLLQADY EGDALDAL LVRYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWDEYLDLLQADYAEGDALDALNLVRYCCRRMLMTHVDLIEKLL 60
Query: 42 NYNTLEKSEGT 10
NYNTLEKSEG+
Sbjct: 61 NYNTLEKSEGS 71
>ref|XP_003578831.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC5-like [Brachypodium distachyon]
Length = 71
Score = 143 bits (361), Expect = 2e-32
Identities = 67/71 (94%), Positives = 68/71 (95%)
Frame = -2
Query: 222 MIIPVRCFTCGKVIGNKWDSYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 43
MIIPVRCFTCGKVIGNKWD YLDLLQADY EGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWDHYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
Query: 42 NYNTLEKSEGT 10
NYNTLEK+E T
Sbjct: 61 NYNTLEKTEAT 71
>ref|XP_002263065.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC5 [Vitis vinifera] gi|297739069|emb|CBI28558.3|
unnamed protein product [Vitis vinifera]
gi|508787490|gb|EOY34746.1| RNA polymerases N / 8 kDa
subunit [Theobroma cacao]
Length = 71
Score = 143 bits (361), Expect = 2e-32
Identities = 67/69 (97%), Positives = 68/69 (98%)
Frame = -2
Query: 222 MIIPVRCFTCGKVIGNKWDSYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 43
MIIPVRCFTCGKVIGNKWD+YLDLLQADY EGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
Query: 42 NYNTLEKSE 16
NYNTLEKSE
Sbjct: 61 NYNTLEKSE 69
>ref|XP_004297393.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC5-like [Fragaria vesca subsp. vesca]
Length = 71
Score = 142 bits (359), Expect = 4e-32
Identities = 66/71 (92%), Positives = 69/71 (97%)
Frame = -2
Query: 222 MIIPVRCFTCGKVIGNKWDSYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 43
MIIPVRCFTCGKVIGNKWD+YLDLLQADY EGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
Query: 42 NYNTLEKSEGT 10
NYNTLEKS+ +
Sbjct: 61 NYNTLEKSDNS 71
>ref|XP_006828771.1| hypothetical protein AMTR_s00001p00093860 [Amborella trichopoda]
gi|586757438|ref|XP_006853572.1| hypothetical protein
AMTR_s00032p00243320 [Amborella trichopoda]
gi|548833750|gb|ERM96187.1| hypothetical protein
AMTR_s00001p00093860 [Amborella trichopoda]
gi|548857225|gb|ERN15039.1| hypothetical protein
AMTR_s00032p00243320 [Amborella trichopoda]
Length = 71
Score = 142 bits (358), Expect = 5e-32
Identities = 66/69 (95%), Positives = 68/69 (98%)
Frame = -2
Query: 222 MIIPVRCFTCGKVIGNKWDSYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 43
MIIPVRCFTCGKVIGNKWD+YLDLLQADY EGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
Query: 42 NYNTLEKSE 16
NYNTLEK+E
Sbjct: 61 NYNTLEKNE 69
>ref|NP_001067421.1| Os11g0194800 [Oryza sativa Japonica Group]
gi|62733950|gb|AAX96059.1| dna-directed rna polymerase
ii 8.2 kda polypeptide (ec 2.7.7.6)(rpb10) (rp10)
(abc10) [Oryza sativa Japonica Group]
gi|77549069|gb|ABA91866.1| DNA-directed RNA polymerase
II 8.2 kDa polypeptide, putative, expressed [Oryza
sativa Japonica Group] gi|113644643|dbj|BAF27784.1|
Os11g0194800 [Oryza sativa Japonica Group]
gi|215766304|dbj|BAG98532.1| unnamed protein product
[Oryza sativa Japonica Group]
Length = 74
Score = 142 bits (358), Expect = 5e-32
Identities = 67/71 (94%), Positives = 68/71 (95%)
Frame = -2
Query: 222 MIIPVRCFTCGKVIGNKWDSYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 43
MIIPVRCFTCGKVIGNKWD YLDLLQADY EGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWDLYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
Query: 42 NYNTLEKSEGT 10
NYNTLEK+E T
Sbjct: 61 NYNTLEKTETT 71
>gb|ABK20909.1| unknown [Picea sitchensis] gi|116781551|gb|ABK22149.1| unknown
[Picea sitchensis] gi|116789545|gb|ABK25286.1| unknown
[Picea sitchensis]
Length = 71
Score = 142 bits (358), Expect = 5e-32
Identities = 66/69 (95%), Positives = 68/69 (98%)
Frame = -2
Query: 222 MIIPVRCFTCGKVIGNKWDSYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 43
MIIPVRCFTCGKVIGNKWD+YLDLLQADY EGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
Query: 42 NYNTLEKSE 16
NYNTLE+SE
Sbjct: 61 NYNTLERSE 69
>gb|ABF70104.1| DNA-directed RNA polymerase II 8.2 kDa polypeptide, putative [Musa
balbisiana]
Length = 70
Score = 142 bits (358), Expect = 5e-32
Identities = 66/69 (95%), Positives = 68/69 (98%)
Frame = -2
Query: 222 MIIPVRCFTCGKVIGNKWDSYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 43
MIIPVRCFTCGKVIGNKWD+YLDLLQADY EGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
Query: 42 NYNTLEKSE 16
NYNTLEK+E
Sbjct: 61 NYNTLEKTE 69
>gb|EMS59971.1| DNA-directed RNA polymerases I, II, and III subunit RPABC5
[Triticum urartu]
Length = 71
Score = 141 bits (356), Expect = 8e-32
Identities = 66/69 (95%), Positives = 67/69 (97%)
Frame = -2
Query: 222 MIIPVRCFTCGKVIGNKWDSYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 43
MIIPVRCFTCGKVIGNKWD YLDLLQADY EGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWDHYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
Query: 42 NYNTLEKSE 16
NYNTLEK+E
Sbjct: 61 NYNTLEKTE 69
>gb|AFK43820.1| unknown [Medicago truncatula]
Length = 71
Score = 141 bits (356), Expect = 8e-32
Identities = 65/71 (91%), Positives = 68/71 (95%)
Frame = -2
Query: 222 MIIPVRCFTCGKVIGNKWDSYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 43
MIIPVRCFTCGKVIGNKWDSYLD LQADY EGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWDSYLDFLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
Query: 42 NYNTLEKSEGT 10
NYNT+EK+E +
Sbjct: 61 NYNTMEKAEAS 71
>dbj|BAJ94836.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326520229|dbj|BAK04039.1| predicted protein [Hordeum
vulgare subsp. vulgare]
Length = 71
Score = 141 bits (356), Expect = 8e-32
Identities = 66/69 (95%), Positives = 67/69 (97%)
Frame = -2
Query: 222 MIIPVRCFTCGKVIGNKWDSYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 43
MIIPVRCFTCGKVIGNKWD YLDLLQADY EGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWDHYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
Query: 42 NYNTLEKSE 16
NYNTLEK+E
Sbjct: 61 NYNTLEKTE 69
>ref|XP_004135479.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC5-like [Cucumis sativus]
gi|449478734|ref|XP_004155405.1| PREDICTED: DNA-directed
RNA polymerases I, II, and III subunit RPABC5-like
[Cucumis sativus]
Length = 71
Score = 141 bits (355), Expect = 1e-31
Identities = 64/69 (92%), Positives = 68/69 (98%)
Frame = -2
Query: 222 MIIPVRCFTCGKVIGNKWDSYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 43
MIIPVRCFTCGKVIGNKWD+YLDLLQADYPEG+ALD LGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYPEGEALDMLGLVRYCCRRMLMTHVDLIEKLL 60
Query: 42 NYNTLEKSE 16
NYNT++KSE
Sbjct: 61 NYNTMDKSE 69
>ref|XP_003522765.1| PREDICTED: DNA-directed RNA polymerase subunit 10-like protein-like
isoform X1 [Glycine max]
gi|571449916|ref|XP_006578279.1| PREDICTED: DNA-directed
RNA polymerase subunit 10-like protein-like isoform X2
[Glycine max] gi|571449919|ref|XP_006578280.1|
PREDICTED: DNA-directed RNA polymerase subunit 10-like
protein-like isoform X3 [Glycine max]
gi|571449921|ref|XP_006578281.1| PREDICTED: DNA-directed
RNA polymerase subunit 10-like protein-like isoform X4
[Glycine max]
Length = 71
Score = 141 bits (355), Expect = 1e-31
Identities = 65/69 (94%), Positives = 68/69 (98%)
Frame = -2
Query: 222 MIIPVRCFTCGKVIGNKWDSYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 43
MIIPVRCFTCGKVIGNKWD+YLDLLQADY EGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
Query: 42 NYNTLEKSE 16
NYNTL+KS+
Sbjct: 61 NYNTLDKSD 69
>ref|NP_001066312.1| Os12g0180400 [Oryza sativa Japonica Group]
gi|113648819|dbj|BAF29331.1| Os12g0180400 [Oryza sativa
Japonica Group]
Length = 72
Score = 141 bits (355), Expect = 1e-31
Identities = 66/69 (95%), Positives = 67/69 (97%)
Frame = -2
Query: 222 MIIPVRCFTCGKVIGNKWDSYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 43
MIIPVRCFTCGKVIGNKWD YLDLLQADY EGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWDLYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
Query: 42 NYNTLEKSE 16
NYNTLEK+E
Sbjct: 61 NYNTLEKTE 69
>ref|XP_006391977.1| hypothetical protein EUTSA_v10023792mg [Eutrema salsugineum]
gi|557088483|gb|ESQ29263.1| hypothetical protein
EUTSA_v10023792mg [Eutrema salsugineum]
Length = 71
Score = 140 bits (354), Expect = 1e-31
Identities = 64/69 (92%), Positives = 68/69 (98%)
Frame = -2
Query: 222 MIIPVRCFTCGKVIGNKWDSYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIEKLL 43
MIIPVRCFTCGKVIGNKWD+YLDLLQADY EGDALDA+GLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1 MIIPVRCFTCGKVIGNKWDTYLDLLQADYTEGDALDAIGLVRYCCRRMLMTHVDLIEKLL 60
Query: 42 NYNTLEKSE 16
NYNT+EKS+
Sbjct: 61 NYNTMEKSD 69
>ref|XP_002303467.2| DNA-directed RNA polymerase II 8.2 kDa polypeptide family protein
[Populus trichocarpa] gi|550342885|gb|EEE78446.2|
DNA-directed RNA polymerase II 8.2 kDa polypeptide
family protein [Populus trichocarpa]
Length = 74
Score = 140 bits (354), Expect = 1e-31
Identities = 68/74 (91%), Positives = 70/74 (94%), Gaps = 3/74 (4%)
Frame = -2
Query: 222 MIIPVRCFTCG---KVIGNKWDSYLDLLQADYPEGDALDALGLVRYCCRRMLMTHVDLIE 52
MIIPVRCFTCG KVIGNKWD+YLDLLQADY EGDALDALGLVRYCCRRMLMTHVDLIE
Sbjct: 1 MIIPVRCFTCGNCGKVIGNKWDTYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIE 60
Query: 51 KLLNYNTLEKSEGT 10
KLLNYNTLEKSEG+
Sbjct: 61 KLLNYNTLEKSEGS 74