BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Catharanthus22_contig00012580
         (333 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAG66028.1| RNA polymerase I largest subunit [Petunia axilla...    62   1e-07
dbj|BAG66036.1| RNA polymerase I largest subunit [Calibrachoa hy...    61   2e-07
dbj|BAG66026.1| RNA polymerase I largest subunit [Petunia axilla...    61   2e-07
dbj|BAG66034.1| RNA polymerase I largest subunit [Petunia integr...    59   5e-07
dbj|BAG66032.1| RNA polymerase I largest subunit [Petunia integr...    59   5e-07
ref|XP_004249758.1| PREDICTED: DNA-directed RNA polymerase I sub...    57   3e-06
ref|XP_006290488.1| hypothetical protein CARUB_v10016563mg [Caps...    56   4e-06
ref|XP_004136744.1| PREDICTED: DNA-directed RNA polymerase I sub...    56   6e-06

>dbj|BAG66028.1| RNA polymerase I largest subunit [Petunia axillaris subsp.
           subandina] gi|194578642|dbj|BAG66029.1| RNA polymerase I
           largest subunit [Petunia axillaris subsp. subandina]
          Length = 260

 Score = 61.6 bits (148), Expect = 1e-07
 Identities = 33/65 (50%), Positives = 39/65 (60%)
 Frame = -3

Query: 307 EETAEDLGSDMKKRKQQTTDEMDYEEGSEDETVEDDSATEVEKERRKANQSHDGSATAVD 128
           +E  EDL SD +KRKQQTTDEMDY +GSEDE  E  +A EVE          DG    +D
Sbjct: 124 DERTEDLNSDAQKRKQQTTDEMDYGDGSEDEASESATAAEVE----------DGKTDQID 173

Query: 127 EVLSD 113
           E+  D
Sbjct: 174 EMSRD 178


>dbj|BAG66036.1| RNA polymerase I largest subunit [Calibrachoa hybrid cultivar]
          Length = 254

 Score = 60.8 bits (146), Expect = 2e-07
 Identities = 31/61 (50%), Positives = 41/61 (67%)
 Frame = -3

Query: 307 EETAEDLGSDMKKRKQQTTDEMDYEEGSEDETVEDDSATEVEKERRKANQSHDGSATAVD 128
           +E  EDL SD +KRKQQTTDEMDY +GSEDE  E  +  EVE + + A++  +G+   V 
Sbjct: 124 DERTEDLSSDAQKRKQQTTDEMDYGDGSEDEASESATTAEVE-DGKTASRDEEGTRDDVQ 182

Query: 127 E 125
           E
Sbjct: 183 E 183


>dbj|BAG66026.1| RNA polymerase I largest subunit [Petunia axillaris subsp.
           axillaris] gi|194578638|dbj|BAG66027.1| RNA polymerase I
           largest subunit [Petunia axillaris subsp. axillaris]
           gi|194578644|dbj|BAG66030.1| RNA polymerase I largest
           subunit [Petunia axillaris subsp. parodii]
           gi|194578646|dbj|BAG66031.1| RNA polymerase I largest
           subunit [Petunia axillaris subsp. parodii]
          Length = 260

 Score = 60.8 bits (146), Expect = 2e-07
 Identities = 33/65 (50%), Positives = 39/65 (60%)
 Frame = -3

Query: 307 EETAEDLGSDMKKRKQQTTDEMDYEEGSEDETVEDDSATEVEKERRKANQSHDGSATAVD 128
           +E  EDL SD +KRKQQTTDEMDY +GSEDE  E  +A EVE          DG    +D
Sbjct: 124 DERTEDLNSDAQKRKQQTTDEMDYGDGSEDEASESATAAEVE----------DGKTDQMD 173

Query: 127 EVLSD 113
           E+  D
Sbjct: 174 EMSRD 178


>dbj|BAG66034.1| RNA polymerase I largest subunit [Petunia integrifolia]
           gi|194578654|dbj|BAG66035.1| RNA polymerase I largest
           subunit [Petunia integrifolia]
          Length = 259

 Score = 59.3 bits (142), Expect = 5e-07
 Identities = 32/65 (49%), Positives = 38/65 (58%)
 Frame = -3

Query: 307 EETAEDLGSDMKKRKQQTTDEMDYEEGSEDETVEDDSATEVEKERRKANQSHDGSATAVD 128
           +E  EDL SD +KRKQQTTDEMDY +GSEDE  E  +  EVE          DG    +D
Sbjct: 124 DERTEDLNSDAQKRKQQTTDEMDYGDGSEDEASESATTAEVE----------DGKTDQMD 173

Query: 127 EVLSD 113
           E+  D
Sbjct: 174 EMSRD 178


>dbj|BAG66032.1| RNA polymerase I largest subunit [Petunia integrifolia subsp.
           inflata] gi|194578650|dbj|BAG66033.1| RNA polymerase I
           largest subunit [Petunia integrifolia subsp. inflata]
          Length = 259

 Score = 59.3 bits (142), Expect = 5e-07
 Identities = 32/65 (49%), Positives = 38/65 (58%)
 Frame = -3

Query: 307 EETAEDLGSDMKKRKQQTTDEMDYEEGSEDETVEDDSATEVEKERRKANQSHDGSATAVD 128
           +E  EDL SD +KRKQQTTDEMDY +GSEDE  E  +  EVE          DG    +D
Sbjct: 124 DERTEDLNSDAQKRKQQTTDEMDYGDGSEDEASESATTAEVE----------DGKTDQMD 173

Query: 127 EVLSD 113
           E+  D
Sbjct: 174 EMSRD 178


>ref|XP_004249758.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Solanum
            lycopersicum]
          Length = 1677

 Score = 56.6 bits (135), Expect = 3e-06
 Identities = 28/69 (40%), Positives = 40/69 (57%)
 Frame = -3

Query: 307  EETAEDLGSDMKKRKQQTTDEMDYEEGSEDETVEDDSATEVEKERRKANQSHDGSATAVD 128
            +E  EDL SD +KRKQQTTDEMDY++  ++   E ++  E+E E+ +     D      +
Sbjct: 1345 DERTEDLSSDAQKRKQQTTDEMDYDDDEDEAEAEAEATAEIEDEKSEQTDEIDNGD---E 1401

Query: 127  EVLSDAGNE 101
            E   D GNE
Sbjct: 1402 EENGDRGNE 1410


>ref|XP_006290488.1| hypothetical protein CARUB_v10016563mg [Capsella rubella]
            gi|482559195|gb|EOA23386.1| hypothetical protein
            CARUB_v10016563mg [Capsella rubella]
          Length = 1651

 Score = 56.2 bits (134), Expect = 4e-06
 Identities = 30/63 (47%), Positives = 38/63 (60%), Gaps = 5/63 (7%)
 Frame = -3

Query: 295  EDLGSDMKKRKQQTTDEMDYEEGSEDETVEDDSAT-----EVEKERRKANQSHDGSATAV 131
            +DLGSD +KRK+Q TDEMDYEE SEDET E  S +     E++ E      S +G+    
Sbjct: 1339 DDLGSDAQKRKKQATDEMDYEENSEDETNEPSSISGVEDPEIDNENEDVEVSKEGTPEQQ 1398

Query: 130  DEV 122
             EV
Sbjct: 1399 KEV 1401


>ref|XP_004136744.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like [Cucumis
            sativus]
          Length = 1650

 Score = 55.8 bits (133), Expect = 6e-06
 Identities = 31/70 (44%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
 Frame = -3

Query: 304  ETAEDLGSDMKKRKQQTTDEMDYEEGSEDETVEDDSATEVEKERRKANQSHDGSATAVD- 128
            + AEDLGSDMKK+K Q  DEMDYE+ SED+    +S+T  E E    +Q  +   T  D 
Sbjct: 1321 DVAEDLGSDMKKQKLQANDEMDYEDDSEDDLNAKESSTGFESE---VDQGDEAEITNNDM 1377

Query: 127  -EVLSDAGNE 101
             E++ D+ +E
Sbjct: 1378 IEIVKDSASE 1387