BLASTX nr result
ID: Catharanthus22_contig00012579
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus22_contig00012579
(333 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002876429.1| hypothetical protein ARALYDRAFT_486216 [Arab... 68 1e-09
dbj|BAG66026.1| RNA polymerase I largest subunit [Petunia axilla... 67 3e-09
ref|NP_191325.1| nuclear RNA polymerase A1 [Arabidopsis thaliana... 67 3e-09
dbj|BAG66036.1| RNA polymerase I largest subunit [Calibrachoa hy... 66 5e-09
dbj|BAG66028.1| RNA polymerase I largest subunit [Petunia axilla... 66 5e-09
dbj|BAG66034.1| RNA polymerase I largest subunit [Petunia integr... 65 9e-09
dbj|BAG66032.1| RNA polymerase I largest subunit [Petunia integr... 65 9e-09
gb|EOY09358.1| Nuclear RNA polymerase A1 isoform 4 [Theobroma ca... 65 1e-08
gb|EOY09357.1| Nuclear RNA polymerase A1 isoform 3 [Theobroma ca... 65 1e-08
gb|EOY09356.1| Nuclear RNA polymerase A1, putative isoform 2 [Th... 65 1e-08
ref|XP_006290488.1| hypothetical protein CARUB_v10016563mg [Caps... 64 3e-08
ref|XP_004249758.1| PREDICTED: DNA-directed RNA polymerase I sub... 63 4e-08
ref|XP_004136744.1| PREDICTED: DNA-directed RNA polymerase I sub... 62 6e-08
gb|ESW17626.1| hypothetical protein PHAVU_007G255400g [Phaseolus... 62 1e-07
ref|XP_002526734.1| DNA-directed RNA polymerase I largest subuni... 60 3e-07
ref|XP_006588921.1| PREDICTED: DNA-directed RNA polymerase I sub... 60 4e-07
ref|XP_006493898.1| PREDICTED: DNA-directed RNA polymerase I sub... 58 1e-06
ref|XP_006421454.1| hypothetical protein CICLE_v10004132mg [Citr... 57 3e-06
ref|XP_004165748.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed... 56 4e-06
ref|XP_003607990.1| DNA-directed RNA polymerase subunit beta [Me... 56 6e-06
>ref|XP_002876429.1| hypothetical protein ARALYDRAFT_486216 [Arabidopsis lyrata subsp.
lyrata] gi|297322267|gb|EFH52688.1| hypothetical protein
ARALYDRAFT_486216 [Arabidopsis lyrata subsp. lyrata]
Length = 1678
Score = 67.8 bits (164), Expect = 1e-09
Identities = 35/68 (51%), Positives = 45/68 (66%)
Frame = -3
Query: 331 DDGDDDGCEETAEDLGSDMKKRKQQTTDEMDYEEGSEDETVEGDSATEVEKERRKANQSH 152
DDGDDDG +DLGSD +K+K+Q TDEMDYEE SEDET E S + VE + +++
Sbjct: 1340 DDGDDDGEGTEVDDLGSDAQKQKKQVTDEMDYEENSEDETNEPSSISGVE-DPEMDSENE 1398
Query: 151 DGSATVED 128
D + ED
Sbjct: 1399 DAEVSKED 1406
>dbj|BAG66026.1| RNA polymerase I largest subunit [Petunia axillaris subsp.
axillaris] gi|194578638|dbj|BAG66027.1| RNA polymerase I
largest subunit [Petunia axillaris subsp. axillaris]
gi|194578644|dbj|BAG66030.1| RNA polymerase I largest
subunit [Petunia axillaris subsp. parodii]
gi|194578646|dbj|BAG66031.1| RNA polymerase I largest
subunit [Petunia axillaris subsp. parodii]
Length = 260
Score = 66.6 bits (161), Expect = 3e-09
Identities = 36/69 (52%), Positives = 43/69 (62%), Gaps = 2/69 (2%)
Frame = -3
Query: 328 DGDDDGCEETAEDLGSDMKKRKQQTTDEMDYEEGSEDETVEGDSATEVE--KERRKANQS 155
D DD+ +E EDL SD +KRKQQTTDEMDY +GSEDE E +A EVE K + S
Sbjct: 117 DDDDEAEDERTEDLNSDAQKRKQQTTDEMDYGDGSEDEASESATAAEVEDGKTDQMDEMS 176
Query: 154 HDGSATVED 128
D T +D
Sbjct: 177 RDEEGTRDD 185
>ref|NP_191325.1| nuclear RNA polymerase A1 [Arabidopsis thaliana]
gi|4678281|emb|CAB41189.1| DNA-directed RNA polymerase I
190K chain-like protein [Arabidopsis thaliana]
gi|332646163|gb|AEE79684.1| nuclear RNA polymerase A1
[Arabidopsis thaliana]
Length = 1670
Score = 66.6 bits (161), Expect = 3e-09
Identities = 35/68 (51%), Positives = 45/68 (66%)
Frame = -3
Query: 331 DDGDDDGCEETAEDLGSDMKKRKQQTTDEMDYEEGSEDETVEGDSATEVEKERRKANQSH 152
DDGDDDG +DLGSD +K+K+Q TDEMDYEE SEDET E S + VE + +++
Sbjct: 1339 DDGDDDGEGTEVDDLGSDAQKQKKQETDEMDYEENSEDETNEPSSISGVE-DPEMDSENE 1397
Query: 151 DGSATVED 128
D + ED
Sbjct: 1398 DTEVSKED 1405
>dbj|BAG66036.1| RNA polymerase I largest subunit [Calibrachoa hybrid cultivar]
Length = 254
Score = 65.9 bits (159), Expect = 5e-09
Identities = 33/71 (46%), Positives = 43/71 (60%)
Frame = -3
Query: 328 DGDDDGCEETAEDLGSDMKKRKQQTTDEMDYEEGSEDETVEGDSATEVEKERRKANQSHD 149
D DD+ +E EDL SD +KRKQQTTDEMDY +GSEDE E + EVE + +
Sbjct: 117 DDDDEAEDERTEDLSSDAQKRKQQTTDEMDYGDGSEDEASESATTAEVEDGKTASRDEEG 176
Query: 148 GSATVEDEVLS 116
V++E +S
Sbjct: 177 TRDDVQEEEVS 187
>dbj|BAG66028.1| RNA polymerase I largest subunit [Petunia axillaris subsp.
subandina] gi|194578642|dbj|BAG66029.1| RNA polymerase I
largest subunit [Petunia axillaris subsp. subandina]
Length = 260
Score = 65.9 bits (159), Expect = 5e-09
Identities = 36/69 (52%), Positives = 43/69 (62%), Gaps = 2/69 (2%)
Frame = -3
Query: 328 DGDDDGCEETAEDLGSDMKKRKQQTTDEMDYEEGSEDETVEGDSATEVE--KERRKANQS 155
D DD+ +E EDL SD +KRKQQTTDEMDY +GSEDE E +A EVE K + S
Sbjct: 117 DDDDEAEDERTEDLNSDAQKRKQQTTDEMDYGDGSEDEASESATAAEVEDGKTDQIDEMS 176
Query: 154 HDGSATVED 128
D T +D
Sbjct: 177 RDEEGTRDD 185
>dbj|BAG66034.1| RNA polymerase I largest subunit [Petunia integrifolia]
gi|194578654|dbj|BAG66035.1| RNA polymerase I largest
subunit [Petunia integrifolia]
Length = 259
Score = 65.1 bits (157), Expect = 9e-09
Identities = 35/69 (50%), Positives = 42/69 (60%), Gaps = 2/69 (2%)
Frame = -3
Query: 328 DGDDDGCEETAEDLGSDMKKRKQQTTDEMDYEEGSEDETVEGDSATEVE--KERRKANQS 155
D DD+ +E EDL SD +KRKQQTTDEMDY +GSEDE E + EVE K + S
Sbjct: 117 DDDDEAEDERTEDLNSDAQKRKQQTTDEMDYGDGSEDEASESATTAEVEDGKTDQMDEMS 176
Query: 154 HDGSATVED 128
D T +D
Sbjct: 177 RDEEGTRDD 185
>dbj|BAG66032.1| RNA polymerase I largest subunit [Petunia integrifolia subsp.
inflata] gi|194578650|dbj|BAG66033.1| RNA polymerase I
largest subunit [Petunia integrifolia subsp. inflata]
Length = 259
Score = 65.1 bits (157), Expect = 9e-09
Identities = 35/69 (50%), Positives = 42/69 (60%), Gaps = 2/69 (2%)
Frame = -3
Query: 328 DGDDDGCEETAEDLGSDMKKRKQQTTDEMDYEEGSEDETVEGDSATEVE--KERRKANQS 155
D DD+ +E EDL SD +KRKQQTTDEMDY +GSEDE E + EVE K + S
Sbjct: 117 DDDDEAEDERTEDLNSDAQKRKQQTTDEMDYGDGSEDEASESATTAEVEDGKTDQMDEMS 176
Query: 154 HDGSATVED 128
D T +D
Sbjct: 177 RDEEGTRDD 185
>gb|EOY09358.1| Nuclear RNA polymerase A1 isoform 4 [Theobroma cacao]
Length = 1397
Score = 64.7 bits (156), Expect = 1e-08
Identities = 37/76 (48%), Positives = 48/76 (63%)
Frame = -3
Query: 331 DDGDDDGCEETAEDLGSDMKKRKQQTTDEMDYEEGSEDETVEGDSATEVEKERRKANQSH 152
DD DD EE AEDLG D +K+KQQTTDEMDYE+ SE E EG S +E E + S
Sbjct: 1058 DDDDDADDEERAEDLGLDAQKQKQQTTDEMDYEDDSEVEQNEGASLAALESE---IDMSE 1114
Query: 151 DGSATVEDEVLSDADN 104
D + T++ ++ +DN
Sbjct: 1115 DETGTIQINMIG-SDN 1129
>gb|EOY09357.1| Nuclear RNA polymerase A1 isoform 3 [Theobroma cacao]
Length = 1400
Score = 64.7 bits (156), Expect = 1e-08
Identities = 37/76 (48%), Positives = 48/76 (63%)
Frame = -3
Query: 331 DDGDDDGCEETAEDLGSDMKKRKQQTTDEMDYEEGSEDETVEGDSATEVEKERRKANQSH 152
DD DD EE AEDLG D +K+KQQTTDEMDYE+ SE E EG S +E E + S
Sbjct: 1061 DDDDDADDEERAEDLGLDAQKQKQQTTDEMDYEDDSEVEQNEGASLAALESE---IDMSE 1117
Query: 151 DGSATVEDEVLSDADN 104
D + T++ ++ +DN
Sbjct: 1118 DETGTIQINMIG-SDN 1132
>gb|EOY09356.1| Nuclear RNA polymerase A1, putative isoform 2 [Theobroma cacao]
Length = 1689
Score = 64.7 bits (156), Expect = 1e-08
Identities = 37/76 (48%), Positives = 48/76 (63%)
Frame = -3
Query: 331 DDGDDDGCEETAEDLGSDMKKRKQQTTDEMDYEEGSEDETVEGDSATEVEKERRKANQSH 152
DD DD EE AEDLG D +K+KQQTTDEMDYE+ SE E EG S +E E + S
Sbjct: 1350 DDDDDADDEERAEDLGLDAQKQKQQTTDEMDYEDDSEVEQNEGASLAALESE---IDMSE 1406
Query: 151 DGSATVEDEVLSDADN 104
D + T++ ++ +DN
Sbjct: 1407 DETGTIQINMIG-SDN 1421
>ref|XP_006290488.1| hypothetical protein CARUB_v10016563mg [Capsella rubella]
gi|482559195|gb|EOA23386.1| hypothetical protein
CARUB_v10016563mg [Capsella rubella]
Length = 1651
Score = 63.5 bits (153), Expect = 3e-08
Identities = 34/74 (45%), Positives = 44/74 (59%), Gaps = 5/74 (6%)
Frame = -3
Query: 328 DGDDDGCEETAEDLGSDMKKRKQQTTDEMDYEEGSEDETVEGDSAT-----EVEKERRKA 164
+ DDDG +DLGSD +KRK+Q TDEMDYEE SEDET E S + E++ E
Sbjct: 1328 EDDDDGEGTEVDDLGSDAQKRKKQATDEMDYEENSEDETNEPSSISGVEDPEIDNENEDV 1387
Query: 163 NQSHDGSATVEDEV 122
S +G+ + EV
Sbjct: 1388 EVSKEGTPEQQKEV 1401
>ref|XP_004249758.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Solanum
lycopersicum]
Length = 1677
Score = 63.2 bits (152), Expect = 4e-08
Identities = 31/76 (40%), Positives = 44/76 (57%)
Frame = -3
Query: 328 DGDDDGCEETAEDLGSDMKKRKQQTTDEMDYEEGSEDETVEGDSATEVEKERRKANQSHD 149
D DDD +E EDL SD +KRKQQTTDEMDY++ ++ E ++ E+E E+ + D
Sbjct: 1338 DDDDDDEDERTEDLSSDAQKRKQQTTDEMDYDDDEDEAEAEAEATAEIEDEKSEQTDEID 1397
Query: 148 GSATVEDEVLSDADNE 101
++E D NE
Sbjct: 1398 NG---DEEENGDRGNE 1410
>ref|XP_004136744.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like [Cucumis
sativus]
Length = 1650
Score = 62.4 bits (150), Expect = 6e-08
Identities = 36/80 (45%), Positives = 50/80 (62%), Gaps = 3/80 (3%)
Frame = -3
Query: 331 DDGDDDGCE-ETAEDLGSDMKKRKQQTTDEMDYEEGSEDETVEGDSATEVEKERRKANQS 155
DD DD+G + + AEDLGSDMKK+K Q DEMDYE+ SED+ +S+T E E +Q
Sbjct: 1311 DDDDDEGNDLDVAEDLGSDMKKQKLQANDEMDYEDDSEDDLNAKESSTGFESE---VDQG 1367
Query: 154 HDGSATVED--EVLSDADNE 101
+ T D E++ D+ +E
Sbjct: 1368 DEAEITNNDMIEIVKDSASE 1387
>gb|ESW17626.1| hypothetical protein PHAVU_007G255400g [Phaseolus vulgaris]
Length = 1637
Score = 61.6 bits (148), Expect = 1e-07
Identities = 35/78 (44%), Positives = 50/78 (64%), Gaps = 4/78 (5%)
Frame = -3
Query: 331 DDGDDDGCEETA--EDLGSDMKKRKQQTTDEMDYEEGSEDETVEGDSATEVEKERRKA-- 164
DD DDD E+T EDLGSD +KRK+Q TDE+DYE+G E+ET +G + E+E +
Sbjct: 1310 DDDDDDVVEDTEGYEDLGSDAQKRKRQGTDEVDYEDGPEEETHDGVLSEEIENDEDNVDD 1369
Query: 163 NQSHDGSATVEDEVLSDA 110
N + D S + + LS++
Sbjct: 1370 NMTLDASDSEGLDELSES 1387
>ref|XP_002526734.1| DNA-directed RNA polymerase I largest subunit, putative [Ricinus
communis] gi|223533923|gb|EEF35648.1| DNA-directed RNA
polymerase I largest subunit, putative [Ricinus communis]
Length = 1686
Score = 60.1 bits (144), Expect = 3e-07
Identities = 32/74 (43%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Frame = -3
Query: 331 DDGDDDGCEETAEDLGSDMKKRKQQTTDEMDYEEGSEDETVEGDS-ATEVEKERRKANQS 155
DD +DD E A+DLG D +KRK Q TDEMDY++G E+E EG+S A+E E
Sbjct: 1336 DDDNDDDDGERADDLGLDAQKRKLQATDEMDYDDGFEEELNEGESTASEEESGFESEIDQ 1395
Query: 154 HDGSATVEDEVLSD 113
D + ++V+ D
Sbjct: 1396 GDNETEISNDVMLD 1409
>ref|XP_006588921.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Glycine
max]
Length = 1651
Score = 59.7 bits (143), Expect = 4e-07
Identities = 34/78 (43%), Positives = 47/78 (60%), Gaps = 2/78 (2%)
Frame = -3
Query: 331 DDGDDDGCEETA--EDLGSDMKKRKQQTTDEMDYEEGSEDETVEGDSATEVEKERRKANQ 158
DD D G E+T EDLGSD +KRK Q TDE+DYE+G E+ET +G+ + E+E +
Sbjct: 1318 DDEDGGGVEDTEGYEDLGSDAQKRKLQGTDEVDYEDGPEEETHDGELSEEIEGD----ED 1373
Query: 157 SHDGSATVEDEVLSDADN 104
D A ++DA+N
Sbjct: 1374 GSDVDANENYNNVTDANN 1391
>ref|XP_006493898.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Citrus
sinensis]
Length = 1715
Score = 57.8 bits (138), Expect = 1e-06
Identities = 36/79 (45%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Frame = -3
Query: 331 DDGDDDGCEETAEDLGSDMKKRKQQTTDEMDYEEGSEDETVEGDSATEVEKERRKANQSH 152
DD DD E AEDLG D K+KQ+ TDE DYE+GSE+E +G SA E +A
Sbjct: 1370 DDDADDADGEEAEDLGMDAHKQKQRATDEKDYEDGSEEEMNDGVSAAGFGSEIDQAESEI 1429
Query: 151 DGSATVEDEVLSD-ADNEM 98
D E E+ D A NE+
Sbjct: 1430 DDD-QAETEIEDDRATNEI 1447
>ref|XP_006421454.1| hypothetical protein CICLE_v10004132mg [Citrus clementina]
gi|557523327|gb|ESR34694.1| hypothetical protein
CICLE_v10004132mg [Citrus clementina]
Length = 1715
Score = 56.6 bits (135), Expect = 3e-06
Identities = 36/79 (45%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Frame = -3
Query: 331 DDGDDDGCEETAEDLGSDMKKRKQQTTDEMDYEEGSEDETVEGDSATEVEKERRKANQSH 152
DD DD E AEDLG D K+KQ+ TDE DYE+GSE E +G SA E +A
Sbjct: 1370 DDDADDADGEEAEDLGMDAHKQKQRATDEKDYEDGSEGEMNDGVSAAGFGSEIDQAESEI 1429
Query: 151 DGSATVEDEVLSD-ADNEM 98
D E E+ D A NE+
Sbjct: 1430 DDD-QAETEIEDDRATNEI 1447
>ref|XP_004165748.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase I subunit
RPA1-like [Cucumis sativus]
Length = 1652
Score = 56.2 bits (134), Expect = 4e-06
Identities = 33/79 (41%), Positives = 48/79 (60%), Gaps = 3/79 (3%)
Frame = -3
Query: 328 DGDDDGCE-ETAEDLGSDMKKRKQQTTDEMDYEEGSEDETVEGDSATEVEKERRKANQSH 152
D DD+G + + AEDLGSD +K+K Q DEMDYE+ SED+ +S+T E E +Q
Sbjct: 1314 DDDDEGNDLDVAEDLGSDXEKQKLQANDEMDYEDDSEDDLNAKESSTGFESE---VDQGD 1370
Query: 151 DGSATVED--EVLSDADNE 101
+ T D E++ D+ +E
Sbjct: 1371 EAEITNNDMIEIVKDSASE 1389
>ref|XP_003607990.1| DNA-directed RNA polymerase subunit beta [Medicago truncatula]
gi|355509045|gb|AES90187.1| DNA-directed RNA polymerase
subunit beta [Medicago truncatula]
Length = 1628
Score = 55.8 bits (133), Expect = 6e-06
Identities = 29/78 (37%), Positives = 45/78 (57%)
Frame = -3
Query: 331 DDGDDDGCEETAEDLGSDMKKRKQQTTDEMDYEEGSEDETVEGDSATEVEKERRKANQSH 152
DD D+ G E AE+ G D +K KQ+ TDE+DY++G E+ET +G+ + +VE +
Sbjct: 1301 DDDDEVGDTEDAEEDGFDAQKSKQRATDEVDYDDGPEEETHDGEKSEDVEVSEDGKDDED 1360
Query: 151 DGSATVEDEVLSDADNEM 98
D V + D+D E+
Sbjct: 1361 DNGVEVNGD---DSDIEV 1375