BLASTX nr result
ID: Catharanthus22_contig00011975
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus22_contig00011975
(211 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera] 100 2e-19
emb|CAN72567.1| hypothetical protein VITISV_044177 [Vitis vinifera] 100 2e-19
emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera] 100 2e-19
gb|AAC28238.1| contains similarity to reverse trancriptase (Pfam... 94 2e-17
emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis] 93 3e-17
gb|AAF19226.1|AC007505_2 Highly similar to Ta1-3 polyprotein [Ar... 91 2e-16
gb|AAC62132.1| copia-like retroelement pol polyprotein [Arabidop... 90 4e-16
ref|XP_004509781.1| PREDICTED: uncharacterized protein LOC101498... 89 6e-16
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118... 89 6e-16
gb|AAD32759.1| putative retroelement pol polyprotein [Arabidopsi... 89 6e-16
gb|AAD17414.1| copia-like retroelement pol polyprotein [Arabidop... 88 1e-15
emb|CAA20201.1| putative transposable element [Arabidopsis thali... 88 1e-15
dbj|BAA96887.1| copia-like retroelement pol polyprotein [Arabido... 87 2e-15
emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera] 87 3e-15
gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsi... 87 3e-15
emb|CAN72340.1| hypothetical protein VITISV_029049 [Vitis vinifera] 86 5e-15
gb|AAD23690.1| putative retroelement pol polyprotein [Arabidopsi... 86 5e-15
gb|AAK38381.1|AC079028_5 polyprotein, putative [Arabidopsis thal... 86 5e-15
emb|CAB75481.1| copia-like polyprotein [Arabidopsis thaliana] 85 9e-15
emb|CAB40039.1| putative retrotransposon [Arabidopsis thaliana] ... 85 1e-14
>emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera]
Length = 1562
Score = 100 bits (249), Expect = 2e-19
Identities = 43/69 (62%), Positives = 51/69 (73%)
Frame = +3
Query: 3 DFSRHVWVFLLKLKDQTFKKFSEWKRLAENQTGNKLKTIRTDNGLEFCNKRFADLCALHG 182
DFSR VWV+ LK KD+ F KF EWK + E +TG +KT+RTDNGLEFCNK F + C G
Sbjct: 619 DFSRKVWVYFLKAKDEVFGKFKEWKTMVEKRTGKVVKTLRTDNGLEFCNKDFDEFCRKEG 678
Query: 183 IIHHRTVRH 209
I+ HRTVRH
Sbjct: 679 IVRHRTVRH 687
>emb|CAN72567.1| hypothetical protein VITISV_044177 [Vitis vinifera]
Length = 950
Score = 100 bits (249), Expect = 2e-19
Identities = 43/69 (62%), Positives = 51/69 (73%)
Frame = +3
Query: 3 DFSRHVWVFLLKLKDQTFKKFSEWKRLAENQTGNKLKTIRTDNGLEFCNKRFADLCALHG 182
DFSR VWV+ LK KD+ F KF EWK + E +TG +KT+RTDNGLEFCNK F + C G
Sbjct: 474 DFSRKVWVYFLKAKDEVFGKFKEWKTMVEKRTGKVVKTLRTDNGLEFCNKDFDEFCRKEG 533
Query: 183 IIHHRTVRH 209
I+ HRTVRH
Sbjct: 534 IVRHRTVRH 542
>emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]
Length = 1643
Score = 100 bits (249), Expect = 2e-19
Identities = 43/69 (62%), Positives = 51/69 (73%)
Frame = +3
Query: 3 DFSRHVWVFLLKLKDQTFKKFSEWKRLAENQTGNKLKTIRTDNGLEFCNKRFADLCALHG 182
DFSR VWV+ LK KD+ F KF EWK + E +TG +KT+RTDNGLEFCNK F + C G
Sbjct: 832 DFSRKVWVYFLKAKDEVFGKFKEWKTMVEKRTGKVVKTLRTDNGLEFCNKDFDEFCRKEG 891
Query: 183 IIHHRTVRH 209
I+ HRTVRH
Sbjct: 892 IVRHRTVRH 900
>gb|AAC28238.1| contains similarity to reverse trancriptase (Pfam: rvt.hmm, score:
19.54) and CCHC-type zinc fingers (Pfam: zf-CCHC.hmm,
score: 12.35) [Arabidopsis thaliana]
gi|7267184|emb|CAB77896.1| putative transposon protein
[Arabidopsis thaliana]
Length = 1104
Score = 93.6 bits (231), Expect = 2e-17
Identities = 42/66 (63%), Positives = 47/66 (71%)
Frame = +3
Query: 3 DFSRHVWVFLLKLKDQTFKKFSEWKRLAENQTGNKLKTIRTDNGLEFCNKRFADLCALHG 182
D SR VW+ LK KD+TF KF EWK + EN G K+KT+RTDNGLEFCN RF D CA G
Sbjct: 430 DKSRKVWLMFLKSKDETFDKFCEWKEIVENHVGKKVKTLRTDNGLEFCNNRFNDYCAKTG 489
Query: 183 IIHHRT 200
I HRT
Sbjct: 490 IERHRT 495
>emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]
Length = 1334
Score = 93.2 bits (230), Expect = 3e-17
Identities = 40/68 (58%), Positives = 51/68 (75%)
Frame = +3
Query: 3 DFSRHVWVFLLKLKDQTFKKFSEWKRLAENQTGNKLKTIRTDNGLEFCNKRFADLCALHG 182
D+SR VW+++LK+KDQ +KF WK L ENQ+ KLK +RTDNGLEFC+K F + C HG
Sbjct: 510 DYSRKVWIYILKIKDQALEKFKVWKSLVENQSDFKLKCLRTDNGLEFCSKVFEEYCQKHG 569
Query: 183 IIHHRTVR 206
I H+TVR
Sbjct: 570 IKRHKTVR 577
>gb|AAF19226.1|AC007505_2 Highly similar to Ta1-3 polyprotein [Arabidopsis thaliana]
Length = 1356
Score = 90.5 bits (223), Expect = 2e-16
Identities = 40/66 (60%), Positives = 46/66 (69%)
Frame = +3
Query: 3 DFSRHVWVFLLKLKDQTFKKFSEWKRLAENQTGNKLKTIRTDNGLEFCNKRFADLCALHG 182
D +R VW++ LK KD+TF KF EWK L ENQ K+K +RTDNGLEFCN RF C HG
Sbjct: 525 DKTRKVWLYFLKSKDETFDKFCEWKSLVENQVNKKVKCLRTDNGLEFCNSRFDSYCKEHG 584
Query: 183 IIHHRT 200
I HRT
Sbjct: 585 IERHRT 590
>gb|AAC62132.1| copia-like retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1137
Score = 89.7 bits (221), Expect = 4e-16
Identities = 37/66 (56%), Positives = 49/66 (74%)
Frame = +3
Query: 3 DFSRHVWVFLLKLKDQTFKKFSEWKRLAENQTGNKLKTIRTDNGLEFCNKRFADLCALHG 182
D+SR VWV+ LK KD+ F F+EWK++ E Q+ KLK +RTDNGLEFCN +F ++C G
Sbjct: 320 DWSRKVWVYFLKTKDEAFASFTEWKKMVETQSERKLKHLRTDNGLEFCNHKFDEVCKKEG 379
Query: 183 IIHHRT 200
I+ HRT
Sbjct: 380 IVRHRT 385
>ref|XP_004509781.1| PREDICTED: uncharacterized protein LOC101498326 [Cicer arietinum]
Length = 598
Score = 89.0 bits (219), Expect = 6e-16
Identities = 35/68 (51%), Positives = 50/68 (73%)
Frame = +3
Query: 3 DFSRHVWVFLLKLKDQTFKKFSEWKRLAENQTGNKLKTIRTDNGLEFCNKRFADLCALHG 182
D+SR +W++LLK KD+TFK F +WK + EN+ ++KT+RT NGLEFC++ F C HG
Sbjct: 265 DYSRKIWIYLLKSKDETFKTFKDWKSMVENRIDKRIKTLRTYNGLEFCSEEFTSFCKTHG 324
Query: 183 IIHHRTVR 206
+ +RTVR
Sbjct: 325 VNKYRTVR 332
>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
copia LTR rider [Solanum lycopersicum]
Length = 1307
Score = 89.0 bits (219), Expect = 6e-16
Identities = 39/69 (56%), Positives = 48/69 (69%)
Frame = +3
Query: 3 DFSRHVWVFLLKLKDQTFKKFSEWKRLAENQTGNKLKTIRTDNGLEFCNKRFADLCALHG 182
D+SR WV+++K K + F+KF EWK L ENQTG K+K +RTDNGLEFC F C G
Sbjct: 498 DYSRMTWVYMMKHKSEAFQKFKEWKILMENQTGKKIKRLRTDNGLEFCWSEFDQFCKDEG 557
Query: 183 IIHHRTVRH 209
I HRTVR+
Sbjct: 558 IARHRTVRN 566
>gb|AAD32759.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1356
Score = 89.0 bits (219), Expect = 6e-16
Identities = 39/66 (59%), Positives = 47/66 (71%)
Frame = +3
Query: 3 DFSRHVWVFLLKLKDQTFKKFSEWKRLAENQTGNKLKTIRTDNGLEFCNKRFADLCALHG 182
DF+R VWV+ +K KD+ F+KF EW L ENQT ++KT+RTDNGLEFCNK F C G
Sbjct: 526 DFTRKVWVYFMKTKDEAFEKFVEWVNLVENQTDRRVKTLRTDNGLEFCNKLFDGFCESIG 585
Query: 183 IIHHRT 200
I HRT
Sbjct: 586 IHRHRT 591
>gb|AAD17414.1| copia-like retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1166
Score = 88.2 bits (217), Expect = 1e-15
Identities = 39/66 (59%), Positives = 48/66 (72%)
Frame = +3
Query: 3 DFSRHVWVFLLKLKDQTFKKFSEWKRLAENQTGNKLKTIRTDNGLEFCNKRFADLCALHG 182
DFS+ VWV+ LK KD+ + KF EWK+ ENQTG K+K +RTDNGLEF N +F +LC G
Sbjct: 409 DFSKKVWVYFLKTKDEAYHKFREWKQAVENQTGKKIKYLRTDNGLEFYNTQFDNLCKEDG 468
Query: 183 IIHHRT 200
I HRT
Sbjct: 469 IKRHRT 474
>emb|CAA20201.1| putative transposable element [Arabidopsis thaliana]
gi|7268932|emb|CAB79135.1| putative transposable element
[Arabidopsis thaliana]
Length = 1308
Score = 87.8 bits (216), Expect = 1e-15
Identities = 38/66 (57%), Positives = 47/66 (71%)
Frame = +3
Query: 3 DFSRHVWVFLLKLKDQTFKKFSEWKRLAENQTGNKLKTIRTDNGLEFCNKRFADLCALHG 182
D SR VW+ LK KD+TF++F EWK L ENQ K+K +RTDNGLEFCN +F + C +G
Sbjct: 516 DKSRKVWLMFLKTKDETFERFCEWKELVENQVNKKVKILRTDNGLEFCNLKFDEFCKQNG 575
Query: 183 IIHHRT 200
I HRT
Sbjct: 576 IERHRT 581
>dbj|BAA96887.1| copia-like retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1140
Score = 87.4 bits (215), Expect = 2e-15
Identities = 38/66 (57%), Positives = 46/66 (69%)
Frame = +3
Query: 3 DFSRHVWVFLLKLKDQTFKKFSEWKRLAENQTGNKLKTIRTDNGLEFCNKRFADLCALHG 182
D +R VW+ LK KD+TF KF EWK L ENQ K+K +RTDNGLEFCN +F + C +G
Sbjct: 502 DKTRKVWLMFLKTKDETFDKFCEWKELVENQVNKKIKVLRTDNGLEFCNLKFDEYCKKNG 561
Query: 183 IIHHRT 200
I HRT
Sbjct: 562 IERHRT 567
>emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]
Length = 1208
Score = 86.7 bits (213), Expect = 3e-15
Identities = 39/69 (56%), Positives = 47/69 (68%)
Frame = +3
Query: 3 DFSRHVWVFLLKLKDQTFKKFSEWKRLAENQTGNKLKTIRTDNGLEFCNKRFADLCALHG 182
D+SR VW++ LK K +TF KF EWK L E QT K+K +RTDNGLEF + F LC G
Sbjct: 478 DYSRKVWIYFLKNKSETFLKFKEWKILVETQTSRKVKKLRTDNGLEFLSNDFNSLCQKEG 537
Query: 183 IIHHRTVRH 209
I HRTVR+
Sbjct: 538 IARHRTVRY 546
>gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1335
Score = 86.7 bits (213), Expect = 3e-15
Identities = 34/66 (51%), Positives = 48/66 (72%)
Frame = +3
Query: 3 DFSRHVWVFLLKLKDQTFKKFSEWKRLAENQTGNKLKTIRTDNGLEFCNKRFADLCALHG 182
D+SR VW++ L+ KD+ F+KF EWK++ ENQ+ K+K +RTDNGLE+CN F C G
Sbjct: 502 DYSRKVWIYFLRKKDEAFEKFVEWKKMVENQSDRKVKKLRTDNGLEYCNHYFEKFCKEEG 561
Query: 183 IIHHRT 200
I+ H+T
Sbjct: 562 IVRHKT 567
>emb|CAN72340.1| hypothetical protein VITISV_029049 [Vitis vinifera]
Length = 358
Score = 85.9 bits (211), Expect = 5e-15
Identities = 35/66 (53%), Positives = 50/66 (75%)
Frame = +3
Query: 9 SRHVWVFLLKLKDQTFKKFSEWKRLAENQTGNKLKTIRTDNGLEFCNKRFADLCALHGII 188
SR VWVF+L KD+TF++F +WK + +NQT LK +RT+NGLEFC ++F++LC GI+
Sbjct: 173 SRKVWVFILISKDETFEEFKQWKVMVDNQTNRNLKCLRTNNGLEFCGEKFSNLCGNQGIV 232
Query: 189 HHRTVR 206
HRT +
Sbjct: 233 RHRTXK 238
>gb|AAD23690.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1333
Score = 85.9 bits (211), Expect = 5e-15
Identities = 36/66 (54%), Positives = 48/66 (72%)
Frame = +3
Query: 3 DFSRHVWVFLLKLKDQTFKKFSEWKRLAENQTGNKLKTIRTDNGLEFCNKRFADLCALHG 182
D++R V ++ LK KD+ F KF EW L ENQT ++KT+RTDNGLEFCN+ F + C+ G
Sbjct: 504 DYTRKVRIYFLKTKDEAFDKFVEWANLVENQTDKRIKTLRTDNGLEFCNRSFDEFCSQKG 563
Query: 183 IIHHRT 200
I+ HRT
Sbjct: 564 ILWHRT 569
>gb|AAK38381.1|AC079028_5 polyprotein, putative [Arabidopsis thaliana]
Length = 855
Score = 85.9 bits (211), Expect = 5e-15
Identities = 37/66 (56%), Positives = 47/66 (71%)
Frame = +3
Query: 3 DFSRHVWVFLLKLKDQTFKKFSEWKRLAENQTGNKLKTIRTDNGLEFCNKRFADLCALHG 182
D SR VW++ L+ KD+TF KF EWK L ENQT ++K +RTDNGLEFCN +F C +G
Sbjct: 208 DKSRKVWLYFLRSKDETFDKFCEWKELVENQTDKRVKCLRTDNGLEFCNIKFDSYCKKYG 267
Query: 183 IIHHRT 200
I H+T
Sbjct: 268 IERHKT 273
>emb|CAB75481.1| copia-like polyprotein [Arabidopsis thaliana]
Length = 1363
Score = 85.1 bits (209), Expect = 9e-15
Identities = 36/66 (54%), Positives = 46/66 (69%)
Frame = +3
Query: 3 DFSRHVWVFLLKLKDQTFKKFSEWKRLAENQTGNKLKTIRTDNGLEFCNKRFADLCALHG 182
D++R VWV+ LK KD+ F+KF W L ENQ+G ++KT+RTDNGLEFCN+ F C G
Sbjct: 533 DYTRKVWVYFLKTKDEAFEKFVSWISLVENQSGERVKTLRTDNGLEFCNRMFDGFCEEKG 592
Query: 183 IIHHRT 200
HRT
Sbjct: 593 FQRHRT 598
>emb|CAB40039.1| putative retrotransposon [Arabidopsis thaliana]
gi|7267743|emb|CAB78169.1| putative retrotransposon
[Arabidopsis thaliana]
Length = 1230
Score = 84.7 bits (208), Expect = 1e-14
Identities = 35/65 (53%), Positives = 46/65 (70%)
Frame = +3
Query: 6 FSRHVWVFLLKLKDQTFKKFSEWKRLAENQTGNKLKTIRTDNGLEFCNKRFADLCALHGI 185
+SR WV+ LK KD+ F F+EW + ENQTG K+K +R DNGLEFCN++F D C GI
Sbjct: 511 YSRKTWVYFLKHKDEAFGTFAEWSVMVENQTGRKIKILRIDNGLEFCNQQFNDFCKEKGI 570
Query: 186 IHHRT 200
+ H+T
Sbjct: 571 VRHQT 575