BLASTX nr result
ID: Catharanthus22_contig00010549
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus22_contig00010549
(439 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis] 48 1e-08
emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group] 44 9e-08
emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group] 44 9e-08
gb|AAT01387.1| putative polyprotein [Oryza sativa Japonica Group... 40 6e-07
emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera] 41 1e-06
emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera] 41 1e-06
gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group... 40 2e-06
gb|ABA96191.1| retrotransposon protein, putative, Ty1-copia subc... 40 2e-06
gb|ABA96718.1| retrotransposon protein, putative, Ty1-copia subc... 40 2e-06
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-... 40 3e-06
emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group] 40 3e-06
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc... 40 3e-06
gb|AAK52561.1|AC079853_14 Putative retroelement pol polyprotein ... 40 3e-06
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc... 40 3e-06
emb|CAN72704.1| hypothetical protein VITISV_016225 [Vitis vinifera] 49 6e-06
gb|AAC62132.1| copia-like retroelement pol polyprotein [Arabidop... 55 7e-06
gb|EXB73293.1| Retrovirus-related Pol polyprotein from transposo... 55 1e-05
gb|ABA99467.1| retrotransposon protein, putative, Ty1-copia subc... 38 1e-05
>emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]
Length = 1334
Score = 47.8 bits (112), Expect(2) = 1e-08
Identities = 21/35 (60%), Positives = 27/35 (77%)
Frame = +1
Query: 70 LHIRKEGKLDPRSKKSVFIGYPNGVKSYKIWLKGE 174
LHI +GKL+ R+ K VF+GYP+GVK YKIW K +
Sbjct: 658 LHIN-QGKLEARALKGVFVGYPDGVKGYKIWCKDQ 691
Score = 36.6 bits (83), Expect(2) = 1e-08
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = +3
Query: 3 PVELWSGEPQNLSNLRVLWCAAFAH 77
P ELW+G+P N NLRV C A+ H
Sbjct: 635 PEELWNGKPANYQNLRVFGCPAYLH 659
>emb|CAJ86151.1| H0413E07.4 [Oryza sativa Indica Group]
Length = 1205
Score = 44.3 bits (103), Expect(2) = 9e-08
Identities = 16/25 (64%), Positives = 22/25 (88%)
Frame = +1
Query: 88 GKLDPRSKKSVFIGYPNGVKSYKIW 162
GKL+PR+ K +F+GYP+GVK YK+W
Sbjct: 658 GKLEPRTIKCIFLGYPSGVKGYKLW 682
Score = 37.4 bits (85), Expect(2) = 9e-08
Identities = 13/25 (52%), Positives = 19/25 (76%)
Frame = +3
Query: 3 PVELWSGEPQNLSNLRVLWCAAFAH 77
P+++WSG P N S+L+V C A+AH
Sbjct: 630 PIKVWSGSPANYSDLKVFGCTAYAH 654
>emb|CAJ86192.1| H0306F03.15 [Oryza sativa Indica Group]
Length = 1037
Score = 44.3 bits (103), Expect(2) = 9e-08
Identities = 16/25 (64%), Positives = 22/25 (88%)
Frame = +1
Query: 88 GKLDPRSKKSVFIGYPNGVKSYKIW 162
GKL+PR+ K +F+GYP+GVK YK+W
Sbjct: 490 GKLEPRTIKCIFLGYPSGVKGYKLW 514
Score = 37.4 bits (85), Expect(2) = 9e-08
Identities = 13/25 (52%), Positives = 19/25 (76%)
Frame = +3
Query: 3 PVELWSGEPQNLSNLRVLWCAAFAH 77
P+++WSG P N S+L+V C A+AH
Sbjct: 462 PIKVWSGSPANYSDLKVFGCTAYAH 486
>gb|AAT01387.1| putative polyprotein [Oryza sativa Japonica Group]
gi|48475101|gb|AAT44170.1| putative polyprotein [Oryza
sativa Japonica Group]
Length = 1175
Score = 40.0 bits (92), Expect(2) = 6e-07
Identities = 15/25 (60%), Positives = 21/25 (84%)
Frame = +1
Query: 88 GKLDPRSKKSVFIGYPNGVKSYKIW 162
GKL+PR+ K +F+GY +GVK YK+W
Sbjct: 561 GKLEPRAIKCLFLGYGSGVKGYKLW 585
Score = 38.9 bits (89), Expect(2) = 6e-07
Identities = 15/25 (60%), Positives = 18/25 (72%)
Frame = +3
Query: 3 PVELWSGEPQNLSNLRVLWCAAFAH 77
P+E+WSG P N S LRV C A+AH
Sbjct: 533 PIEVWSGMPANYSQLRVFGCTAYAH 557
>emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]
Length = 1643
Score = 41.2 bits (95), Expect(2) = 1e-06
Identities = 14/26 (53%), Positives = 21/26 (80%)
Frame = +1
Query: 85 EGKLDPRSKKSVFIGYPNGVKSYKIW 162
+GKL+PR+ K +F+GY GVK Y++W
Sbjct: 984 DGKLEPRAMKCIFLGYATGVKGYRLW 1009
Score = 36.6 bits (83), Expect(2) = 1e-06
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +3
Query: 3 PVELWSGEPQNLSNLRVLWCAAFAH 77
P E+WSG+P N S L++ C A+AH
Sbjct: 957 PQEVWSGKPSNYSGLKIFGCPAYAH 981
>emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera]
Length = 1562
Score = 41.2 bits (95), Expect(2) = 1e-06
Identities = 14/26 (53%), Positives = 21/26 (80%)
Frame = +1
Query: 85 EGKLDPRSKKSVFIGYPNGVKSYKIW 162
+GKL+PR+ K +F+GY GVK Y++W
Sbjct: 771 DGKLEPRAMKCIFLGYATGVKGYRLW 796
Score = 36.6 bits (83), Expect(2) = 1e-06
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +3
Query: 3 PVELWSGEPQNLSNLRVLWCAAFAH 77
P E+WSG+P N S L++ C A+AH
Sbjct: 744 PQEVWSGKPSNYSGLKIFGCPAYAH 768
>gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group]
gi|53370655|gb|AAU89150.1| integrase core domain
containing protein [Oryza sativa Japonica Group]
gi|108710286|gb|ABF98081.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 1322
Score = 40.0 bits (92), Expect(2) = 2e-06
Identities = 15/25 (60%), Positives = 21/25 (84%)
Frame = +1
Query: 88 GKLDPRSKKSVFIGYPNGVKSYKIW 162
GKL+PR+ K +F+GY +GVK YK+W
Sbjct: 666 GKLEPRAIKCLFLGYGSGVKGYKLW 690
Score = 37.4 bits (85), Expect(2) = 2e-06
Identities = 14/25 (56%), Positives = 18/25 (72%)
Frame = +3
Query: 3 PVELWSGEPQNLSNLRVLWCAAFAH 77
P+E+WSG P + S LRV C A+AH
Sbjct: 638 PIEIWSGMPADYSQLRVFGCTAYAH 662
>gb|ABA96191.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1156
Score = 40.0 bits (92), Expect(2) = 2e-06
Identities = 15/25 (60%), Positives = 21/25 (84%)
Frame = +1
Query: 88 GKLDPRSKKSVFIGYPNGVKSYKIW 162
GKL+PR+ K +F+GY +GVK YK+W
Sbjct: 606 GKLEPRAIKCLFLGYGSGVKGYKLW 630
Score = 37.0 bits (84), Expect(2) = 2e-06
Identities = 14/25 (56%), Positives = 18/25 (72%)
Frame = +3
Query: 3 PVELWSGEPQNLSNLRVLWCAAFAH 77
P+E+WSG P + S LRV C A+AH
Sbjct: 578 PIEVWSGMPADYSQLRVFGCTAYAH 602
>gb|ABA96718.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1131
Score = 40.0 bits (92), Expect(2) = 2e-06
Identities = 15/25 (60%), Positives = 21/25 (84%)
Frame = +1
Query: 88 GKLDPRSKKSVFIGYPNGVKSYKIW 162
GKL+PR+ K +F+GY +GVK YK+W
Sbjct: 594 GKLEPRAIKCLFLGYGSGVKGYKLW 618
Score = 37.0 bits (84), Expect(2) = 2e-06
Identities = 14/25 (56%), Positives = 18/25 (72%)
Frame = +3
Query: 3 PVELWSGEPQNLSNLRVLWCAAFAH 77
P+E+WSG P + S LRV C A+AH
Sbjct: 566 PIEVWSGMPADYSQLRVFGCTAYAH 590
>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group] gi|77549942|gb|ABA92739.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 1373
Score = 40.4 bits (93), Expect(2) = 3e-06
Identities = 15/25 (60%), Positives = 21/25 (84%)
Frame = +1
Query: 88 GKLDPRSKKSVFIGYPNGVKSYKIW 162
GKL+PR+ K +F+GY +GVK YK+W
Sbjct: 665 GKLEPRAVKCLFLGYGSGVKGYKLW 689
Score = 36.2 bits (82), Expect(2) = 3e-06
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +3
Query: 3 PVELWSGEPQNLSNLRVLWCAAFAH 77
P+E+WSG P + S L+V C A+AH
Sbjct: 637 PIEVWSGTPADYSQLKVFGCTAYAH 661
>emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]
Length = 1335
Score = 40.4 bits (93), Expect(2) = 3e-06
Identities = 15/25 (60%), Positives = 21/25 (84%)
Frame = +1
Query: 88 GKLDPRSKKSVFIGYPNGVKSYKIW 162
GKL+PR+ K +F+GY +GVK YK+W
Sbjct: 667 GKLEPRAVKCLFLGYGSGVKGYKLW 691
Score = 36.2 bits (82), Expect(2) = 3e-06
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +3
Query: 3 PVELWSGEPQNLSNLRVLWCAAFAH 77
P+E+WSG P + S L+V C A+AH
Sbjct: 639 PIEVWSGTPADYSQLKVFGCTAYAH 663
>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 40.4 bits (93), Expect(2) = 3e-06
Identities = 15/25 (60%), Positives = 21/25 (84%)
Frame = +1
Query: 88 GKLDPRSKKSVFIGYPNGVKSYKIW 162
GKL+PR+ K +F+GY +GVK YK+W
Sbjct: 665 GKLEPRAVKCLFLGYGSGVKGYKLW 689
Score = 36.2 bits (82), Expect(2) = 3e-06
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +3
Query: 3 PVELWSGEPQNLSNLRVLWCAAFAH 77
P+E+WSG P + S L+V C A+AH
Sbjct: 637 PIEVWSGTPADYSQLKVFGCTAYAH 661
>gb|AAK52561.1|AC079853_14 Putative retroelement pol polyprotein [Oryza sativa Japonica Group]
gi|108708632|gb|ABF96427.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 1326
Score = 39.7 bits (91), Expect(2) = 3e-06
Identities = 15/25 (60%), Positives = 21/25 (84%)
Frame = +1
Query: 88 GKLDPRSKKSVFIGYPNGVKSYKIW 162
GKL+PR+ K +F+GY +GVK YK+W
Sbjct: 666 GKLEPRAIKCLFLGYGSGVKRYKLW 690
Score = 37.0 bits (84), Expect(2) = 3e-06
Identities = 14/25 (56%), Positives = 18/25 (72%)
Frame = +3
Query: 3 PVELWSGEPQNLSNLRVLWCAAFAH 77
P+E+WSG P + S LRV C A+AH
Sbjct: 638 PIEVWSGMPADYSQLRVFGCTAYAH 662
>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 40.4 bits (93), Expect(2) = 3e-06
Identities = 15/25 (60%), Positives = 21/25 (84%)
Frame = +1
Query: 88 GKLDPRSKKSVFIGYPNGVKSYKIW 162
GKL+PR+ K +F+GY +GVK YK+W
Sbjct: 665 GKLEPRAVKCLFLGYGSGVKGYKLW 689
Score = 35.8 bits (81), Expect(2) = 3e-06
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +3
Query: 3 PVELWSGEPQNLSNLRVLWCAAFAH 77
P+E+WSG P + S L+V C A+AH
Sbjct: 637 PIEVWSGMPADYSQLKVFGCTAYAH 661
>emb|CAN72704.1| hypothetical protein VITISV_016225 [Vitis vinifera]
Length = 817
Score = 49.3 bits (116), Expect(2) = 6e-06
Identities = 19/34 (55%), Positives = 26/34 (76%)
Frame = +1
Query: 79 RKEGKLDPRSKKSVFIGYPNGVKSYKIWLKGEPG 180
+ EGKL+PRS K +F+G+P GVK Y++W K PG
Sbjct: 233 QSEGKLEPRSIKCIFLGHPEGVKGYRLWNKESPG 266
Score = 26.2 bits (56), Expect(2) = 6e-06
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +3
Query: 177 GVRVVISRDVIFIELDM 227
GV+++ISRDV+F E +M
Sbjct: 266 GVKIIISRDVVFNENEM 282
>gb|AAC62132.1| copia-like retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1137
Score = 55.5 bits (132), Expect = 7e-06
Identities = 21/37 (56%), Positives = 30/37 (81%)
Frame = +1
Query: 55 FGVLLLHIRKEGKLDPRSKKSVFIGYPNGVKSYKIWL 165
FG ++ +EGKLDPR+KK VF+GYPNGVK +++W+
Sbjct: 462 FGCVVYVYSQEGKLDPRAKKGVFVGYPNGVKGFRVWM 498
>gb|EXB73293.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Morus
notabilis]
Length = 1822
Score = 55.1 bits (131), Expect = 1e-05
Identities = 23/38 (60%), Positives = 28/38 (73%)
Frame = +1
Query: 55 FGVLLLHIRKEGKLDPRSKKSVFIGYPNGVKSYKIWLK 168
FG +KEGKLDPR+KK +F+GYP GVK YK+W K
Sbjct: 117 FGCTAYAHQKEGKLDPRAKKCMFVGYPEGVKGYKLWCK 154
>gb|ABA99467.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1136
Score = 37.7 bits (86), Expect(2) = 1e-05
Identities = 14/25 (56%), Positives = 20/25 (80%)
Frame = +1
Query: 88 GKLDPRSKKSVFIGYPNGVKSYKIW 162
GKL+PR+ K +F+ Y +GVK YK+W
Sbjct: 458 GKLEPRAIKCLFLSYGSGVKGYKLW 482
Score = 37.0 bits (84), Expect(2) = 1e-05
Identities = 14/25 (56%), Positives = 18/25 (72%)
Frame = +3
Query: 3 PVELWSGEPQNLSNLRVLWCAAFAH 77
P+E+WSG P + S LRV C A+AH
Sbjct: 430 PIEVWSGMPADYSQLRVFGCTAYAH 454