BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Catharanthus22_contig00010548
         (673 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAC62132.1| copia-like retroelement pol polyprotein [Arabidop...    97   6e-18
emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]    95   2e-17
emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]         92   2e-16
gb|AAK38381.1|AC079028_5 polyprotein, putative [Arabidopsis thal...    87   4e-15
gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsi...    87   6e-15
dbj|BAB02145.1| copia-like retroelement pol polyprotein-like [Ar...    86   1e-14
emb|CAA20201.1| putative transposable element [Arabidopsis thali...    85   2e-14
gb|AAD17414.1| copia-like retroelement pol polyprotein [Arabidop...    85   2e-14
emb|CAA31653.1| polyprotein [Arabidopsis thaliana]                     84   3e-14
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118...    81   3e-13
dbj|BAB09923.1| copia-like retrotransposable element [Arabidopsi...    80   4e-13
gb|AAD23690.1| putative retroelement pol polyprotein [Arabidopsi...    80   6e-13
pir||S23319 hypothetical protein 2 - Arabidopsis thaliana retrot...    80   7e-13
gb|AAD32759.1| putative retroelement pol polyprotein [Arabidopsi...    76   8e-12
gb|AAF19226.1|AC007505_2 Highly similar to Ta1-3 polyprotein [Ar...    75   2e-11
emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera]    74   3e-11
emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]    74   3e-11
emb|CAN74382.1| hypothetical protein VITISV_007945 [Vitis vinifera]    73   7e-11
gb|AAM08562.1|AC092749_15 Putative retroelement [Oryza sativa Ja...    72   2e-10
gb|AAP53216.2| retrotransposon protein, putative, Ty1-copia subc...    72   2e-10

>gb|AAC62132.1| copia-like retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1137

 Score = 96.7 bits (239), Expect = 6e-18
 Identities = 68/231 (29%), Positives = 109/231 (47%), Gaps = 8/231 (3%)
 Frame = -3

Query: 671  FAHQKEG*LDPRSKKGVFIGYPNGGQGL*DIAXXXXXXXXVISRDVVFNELDMSCLKANI 492
            + + +EG LDPR+KKGVF+GYPNG +G              ISR+VVF E  M       
Sbjct: 467  YVYSQEGKLDPRAKKGVFVGYPNGVKGF--RVWMIEEERCSISRNVVFREDVMYK----- 519

Query: 491  DLVNATYFSLVWNVPIKVEDTPVPTFECTFTPETSNESDNPGSILENDLLKXXXXXXXXX 312
            D++N +   + ++ P+      +P+FEC    +  +E    G + ++D  +         
Sbjct: 520  DILNQSTSGMSFDFPLATNR--IPSFECAGNRK-EDEISVQGGVSDDDTKQSSEESPIST 576

Query: 311  XXEAQTHPLDDYQLTRDRARRTSK*PDRYGN--------SYIVSFAIVATSFVKEKEPMY 156
                Q      YQ+ RD+ +R +K PD+  +          I  +A + T      EP  
Sbjct: 577  GSSGQNSGQRTYQIARDKPKRQTKIPDKLRDYELNEEVLDEIAGYAYMITEDGGNPEPND 636

Query: 155  FTNVVKNPNYSLWIHDMREEMFSFHKNKTWVLVPKPAKQKLNDCK*IFKIK 3
            +   +++ +Y +W+  + EE+ S  KN TWVLV +   QK   CK +FK K
Sbjct: 637  YQKALQDSDYKMWLKAVDEEIESLLKNNTWVLVNRDQFQKPIGCKWVFKRK 687


>emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]
          Length = 1208

 Score = 94.7 bits (234), Expect = 2e-17
 Identities = 67/223 (30%), Positives = 97/223 (43%)
 Frame = -3

Query: 671  FAHQKEG*LDPRSKKGVFIGYPNGGQGL*DIAXXXXXXXXVISRDVVFNELDMSCLKANI 492
            + H K   L+PR+ K +F+GYP G +G             +ISRDV FNE DMS      
Sbjct: 625  YVHTKTDKLEPRAVKCIFLGYPKGVKGYKLWIETQGKGKCIISRDVTFNEQDMSKQTPAK 684

Query: 491  DLVNATYFSLVWNVPIKVEDTPVPTFECTFTPETSNESDNPGSILENDLLKXXXXXXXXX 312
            D+           +  +VE         T  PE S E+ +          K         
Sbjct: 685  DVEGLD------QLQFEVEHE-------TLQPEKSKETSS----------KTAQEEIVHE 721

Query: 311  XXEAQTHPLDDYQLTRDRARRTSK*PDRYGNSYIVSFAIVATSFVKEKEPMYFTNVVKNP 132
                 T  L+ Y L RDR +R  K P RYG + + +FA+     + + EP  +   + + 
Sbjct: 722  RQNEPTQGLESYNLVRDRQKRQVKPPKRYGQAEMTAFALSVAEEIVDMEPKTYQEAINSN 781

Query: 131  NYSLWIHDMREEMFSFHKNKTWVLVPKPAKQKLNDCK*IFKIK 3
                W+  ++EEM S  KN+TW LV KP  +K+   K +FK K
Sbjct: 782  EADQWVKAIQEEMDSLRKNETWELVTKPKDRKVVGSKWVFKRK 824


>emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]
          Length = 1334

 Score = 91.7 bits (226), Expect = 2e-16
 Identities = 64/221 (28%), Positives = 111/221 (50%)
 Frame = -3

Query: 671  FAHQKEG*LDPRSKKGVFIGYPNGGQGL*DIAXXXXXXXXVISRDVVFNELDMSCLKANI 492
            + H  +G L+ R+ KGVF+GYP+G +G             ++SRDVVF+E  +  LK + 
Sbjct: 657  YLHINQGKLEARALKGVFVGYPDGVKGY--KIWCKDQGKCIVSRDVVFHESVL--LKES- 711

Query: 491  DLVNATYFSLVWNVPIKVEDTPVPTFECTFTPETSNESDNPGSILENDLLKXXXXXXXXX 312
                A + + + + P   + +   T +      T   S+   +   +D  +         
Sbjct: 712  ----AEHDAGLQDNPAANKRSGSETSKVNVELLTDKSSEKEAA---SDDERATAESEEHE 764

Query: 311  XXEAQTHPLDDYQLTRDRARRTSK*PDRYGNSYIVSFAIVATSFVKEKEPMYFTNVVKNP 132
              E     L +YQL RDR RR  + P RYG + ++++A++    V  +EP  F+  +++ 
Sbjct: 765  VSELPQADLQNYQLARDRVRREVRAPVRYGYADLIAYALLCADEVTIEEPANFSEAMESV 824

Query: 131  NYSLWIHDMREEMFSFHKNKTWVLVPKPAKQKLNDCK*IFK 9
            +   W+  M++EM S  +N+TW L+P P  ++L +CK IFK
Sbjct: 825  HCDKWLEAMQDEMESLQRNQTWTLIPNPGNKRLINCKWIFK 865


>gb|AAK38381.1|AC079028_5 polyprotein, putative [Arabidopsis thaliana]
          Length = 855

 Score = 87.4 bits (215), Expect = 4e-15
 Identities = 70/232 (30%), Positives = 103/232 (44%), Gaps = 9/232 (3%)
 Frame = -3

Query: 671  FAHQKEG*LDPRSKKGVFIGYPNGGQGL*DIAXXXXXXXXVISRDVVFNEL-------DM 513
            + H  +G L PR+ KG+FIGYP+G +G             VISR+V+F E        D 
Sbjct: 355  YVHVDQGKLKPRAIKGIFIGYPSGTKGY--KVWLLEEQKCVISRNVIFQEEVVYKDLNDK 412

Query: 512  SCLKANIDLVNATYFSLVWNVPIKVEDTPVPTF--ECTFTPETSNESDNPGSILENDLLK 339
              +    D+   T   LV +   +V D    T   EC  + E  N+   P ++ E D   
Sbjct: 413  ETVVKKEDIRTQTDNHLVISKTKEVSDQGGVTHIEECEESDE--NDEQEPETVNETD--- 467

Query: 338  XXXXXXXXXXXEAQTHPLDDYQLTRDRARRTSK*PDRYGNSYIVSFAIVATSFVKEKEPM 159
                             L +YQL +DR RR    P R+     V+FA+V    +  +EP 
Sbjct: 468  ---------PTVESEGSLANYQLAKDRVRRQINPPARFTEESGVAFALVVVESLSLEEPE 518

Query: 158  YFTNVVKNPNYSLWIHDMREEMFSFHKNKTWVLVPKPAKQKLNDCK*IFKIK 3
             +    ++  +  W +   EEM S  KN TW LV KP  +K+  C+ +FK+K
Sbjct: 519  SYQEATQDKEWLKWKNATHEEMDSLIKNGTWDLVDKPTNRKIIGCRWLFKLK 570


>gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1335

 Score = 86.7 bits (213), Expect = 6e-15
 Identities = 76/228 (33%), Positives = 106/228 (46%), Gaps = 5/228 (2%)
 Frame = -3

Query: 671  FAHQKEG*LDPRSKKGVFIGYPNGGQGL*DIAXXXXXXXXVISRDVVFNELDM-SCLKAN 495
            + H  +G L+PRSKKG+F  YP G +G             VISR+V+F E  M   LK  
Sbjct: 649  YIHADQGKLNPRSKKGIFTSYPEGVKGY--KVWVLEDKKCVISRNVIFREQVMFKDLKG- 705

Query: 494  IDLVNATYFSLVWNVPIKVEDTPVP-TFECTFTPETSNESDNPGSILENDLLKXXXXXXX 318
             D  N    S + ++ +  +      T +   T + SN S+   S   N +L        
Sbjct: 706  -DSQNTISESDLEDLRVNPDMNDQEFTDQGGATQDNSNPSEATTS--HNPVLNSPTHSQD 762

Query: 317  XXXXEAQTHPLDD---YQLTRDRARRTSK*PDRYGNSYIVSFAIVATSFVKEKEPMYFTN 147
                E  +  ++D   YQL RDR RRT K   +Y  S +V FA  +    K  EP  +  
Sbjct: 763  EESEEEDSDAVEDLSTYQLVRDRVRRTIKANPKYNESNMVGFAYYSEDDGKP-EPKSYQE 821

Query: 146  VVKNPNYSLWIHDMREEMFSFHKNKTWVLVPKPAKQKLNDCK*IFKIK 3
             + +P++  W   M+EEM S  KN TW LV KP K KL  C+ +F  K
Sbjct: 822  ALLDPDWEKWNAAMKEEMVSMSKNHTWDLVTKPEKVKLIGCRWVFTRK 869


>dbj|BAB02145.1| copia-like retroelement pol polyprotein-like [Arabidopsis thaliana]
          Length = 348

 Score = 85.5 bits (210), Expect = 1e-14
 Identities = 67/224 (29%), Positives = 99/224 (44%), Gaps = 1/224 (0%)
 Frame = -3

Query: 671 FAHQKEG*LDPRSKKGVFIGYPNGGQGL*DIAXXXXXXXXVISRDVVFNELDMSCLKANI 492
           + H  +    PR+ KGVF+GYP G +G               SR+VVFNE+++     + 
Sbjct: 57  YVHVTQDKTSPRAVKGVFMGYPFGIKGY--RVWLPEEGKCTTSRNVVFNEIELYKGTLSS 114

Query: 491 DLVNATYFSLVWNVPIKVEDTPVPTFECTFTPETSNESDNPGSILENDLLKXXXXXXXXX 312
                 Y+ L        ED+       +   ETS+ S      LE              
Sbjct: 115 PDGRTDYYDL--------EDSS------SQGGETSSSSSESSENLEES------ETNEEV 154

Query: 311 XXEAQTHPLDDYQLTRDRARRTS-K*PDRYGNSYIVSFAIVATSFVKEKEPMYFTNVVKN 135
                   LDDY L R+R RR++ + P R+ +   V++A+     ++ +EP  +   +K 
Sbjct: 155 DGSENEQSLDDYLLARERKRRSNIRPPSRFKDGDFVAYALATEEDLEIEEPKSYEEAMKR 214

Query: 134 PNYSLWIHDMREEMFSFHKNKTWVLVPKPAKQKLNDCK*IFKIK 3
                W   M+EEM S  K+ TW L+ KP KQKL  CK IFK+K
Sbjct: 215 SKRKQWESAMKEEMDSHQKSHTWDLIEKPEKQKLIGCKWIFKLK 258


>emb|CAA20201.1| putative transposable element [Arabidopsis thaliana]
            gi|7268932|emb|CAB79135.1| putative transposable element
            [Arabidopsis thaliana]
          Length = 1308

 Score = 85.1 bits (209), Expect = 2e-14
 Identities = 66/232 (28%), Positives = 102/232 (43%), Gaps = 9/232 (3%)
 Frame = -3

Query: 671  FAHQKEG*LDPRSKKGVFIGYPNGGQGL*DIAXXXXXXXXVISRDVVFNELDM------- 513
            + H  +G L PR+ KGVF+GYP G +G             VISR++VFNE  +       
Sbjct: 663  YVHLDQGKLKPRALKGVFLGYPQGTKGY--KVWLLDEEKCVISRNIVFNENQVYKDIRES 720

Query: 512  --SCLKANIDLVNATYFSLVWNVPIKVEDTPVPTFECTFTPETSNESDNPGSILENDLLK 339
                +K   DL     F +      +   T   T E     E   ESD+  S+ +  L+ 
Sbjct: 721  SEQSVKDISDLEGYNEFQVSVKEHGECSKTGGVTIE-----EIDQESDSENSVTQEPLIA 775

Query: 338  XXXXXXXXXXXEAQTHPLDDYQLTRDRARRTSK*PDRYGNSYIVSFAIVATSFVKEKEPM 159
                             L +YQ  RDR RR    P +  +    + A+V    ++ +EP 
Sbjct: 776  SID--------------LSNYQSARDRERRAPNPPQKLADYTHFALALVMAEEIESEEPQ 821

Query: 158  YFTNVVKNPNYSLWIHDMREEMFSFHKNKTWVLVPKPAKQKLNDCK*IFKIK 3
             + +  K+ ++  W   M+EE+ S  KN TW +V  P +QK+  C+ +FK+K
Sbjct: 822  CYHDAKKDKHWIKWNGGMKEEIDSLLKNGTWDIVEWPKEQKVISCRWLFKLK 873


>gb|AAD17414.1| copia-like retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1166

 Score = 85.1 bits (209), Expect = 2e-14
 Identities = 67/233 (28%), Positives = 103/233 (44%), Gaps = 10/233 (4%)
 Frame = -3

Query: 671  FAHQKEG*LDPRSKKGVFIGYPNGGQGL*DIAXXXXXXXXVISRDVVFNELDM-----SC 507
            + H  +    PR+ KGVF+GYP G +G               SR+VVFNE ++     S 
Sbjct: 556  YVHVTQDKTSPRAVKGVFMGYPCGIKGY--RVWLPKEGKCTTSRNVVFNETELYKDTLSS 613

Query: 506  LKANIDLVNATYFSLVW---NVPIKVEDTPVPTFECTFTPETSNES-DNPGSILENDLLK 339
                 +     Y  L      V    +    P+  C    ++S++  +   S  E+    
Sbjct: 614  ADERKEEAEKEYKKLKKARKRVSFSHDLLRGPSTSCCDLDDSSSQGGETSSSSSESSENL 673

Query: 338  XXXXXXXXXXXEAQTHPLDDYQLTRDRARRTS-K*PDRYGNSYIVSFAIVATSFVKEKEP 162
                             LDDY L RD  RR++ + P R+ +   V++A+     ++E+EP
Sbjct: 674  EESEMNEEVVGSENEQSLDDYLLARDMKRRSNIRPPSRFEDEDFVAYALATAEDLEEEEP 733

Query: 161  MYFTNVVKNPNYSLWIHDMREEMFSFHKNKTWVLVPKPAKQKLNDCK*IFKIK 3
              +   +K+     W + M+EEM S  K+ TW L+ KP KQKL  CK IFK+K
Sbjct: 734  KSYEEALKSSKRKQWENAMKEEMDSHKKSHTWDLIEKPEKQKLIGCKWIFKLK 786


>emb|CAA31653.1| polyprotein [Arabidopsis thaliana]
          Length = 1291

 Score = 84.3 bits (207), Expect = 3e-14
 Identities = 70/226 (30%), Positives = 102/226 (45%), Gaps = 3/226 (1%)
 Frame = -3

Query: 671  FAHQKEG*LDPRSKKGVFIGYPNGGQGL*DIAXXXXXXXXVISRDVVFNELDM---SCLK 501
            + H  +G L PR+ KG+FIGYP G +G             VISR+V+F+E  +   +  K
Sbjct: 682  YVHIDQGKLKPRALKGIFIGYPAGTKGY--KIWLLEEHKCVISRNVLFHEESVYKDTMKK 739

Query: 500  ANIDLVNATYFSLVWNVPIKVEDTPVPTFECTFTPETSNESDNPGSILENDLLKXXXXXX 321
              +    A   S   +  IKV+ TP          + S+E ++  S+ E           
Sbjct: 740  ERVVESEAEPASHSKSTLIKVK-TP-GNLNSGEVIQVSDEEESDESVEEEQ----EPETQ 793

Query: 320  XXXXXEAQTHPLDDYQLTRDRARRTSK*PDRYGNSYIVSFAIVATSFVKEKEPMYFTNVV 141
                    T  L +YQL RDR RR    P R+     V+FA+V    +  +EP  +    
Sbjct: 794  VELPETQTTSSLANYQLARDRERRQIHPPARFTEESGVAFALVTVETLSMEEPQSYQEAT 853

Query: 140  KNPNYSLWIHDMREEMFSFHKNKTWVLVPKPAKQKLNDCK*IFKIK 3
             +  +  W     EEM S  KN TWVLV KP  +K+  C+ +FK+K
Sbjct: 854  SDKEWKKWKLATHEEMDSLIKNGTWVLVDKPQNRKIIGCRWLFKLK 899


>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
            copia LTR rider [Solanum lycopersicum]
          Length = 1307

 Score = 80.9 bits (198), Expect = 3e-13
 Identities = 66/225 (29%), Positives = 106/225 (47%), Gaps = 2/225 (0%)
 Frame = -3

Query: 671  FAHQKEG*LDPRSKKGVFIGYPNGGQGL*DIAXXXXXXXXVISRDVVFNELDMSCLKANI 492
            + H  EG L+PR+KKGVF+GY +G +G             ++SR+VVF+E  +  L+   
Sbjct: 645  YYHVSEGKLEPRAKKGVFVGYGDGVKGF--RIWSPAEKRVIMSRNVVFDESPL--LRT-- 698

Query: 491  DLVNATYFSLVWNVPIKVEDTPVPTFECTFTPETSNESDNPGSILENDLLKXXXXXXXXX 312
             +V  T  S   ++  +VE   +        PE  ++        E D+           
Sbjct: 699  -IVKPTTTSETGSLDKQVEFQVIQNESDLKEPEEEDQEPQT----ETDI----------- 742

Query: 311  XXEAQTHPLDDYQ-LTRDRARRTS-K*PDRYGNSYIVSFAIVATSFVKEKEPMYFTNVVK 138
                ++ P D +Q + +DR RR   + P RYG   +V +A+     V   EP  +   + 
Sbjct: 743  ---PESMPSDIHQSIAQDRPRRVGVRPPTRYGFEDMVGYALQVAEEVDTSEPSTYKEAIL 799

Query: 137  NPNYSLWIHDMREEMFSFHKNKTWVLVPKPAKQKLNDCK*IFKIK 3
            + +   W   M +EM S HKN+TW LV +P+ +K+  CK +FK K
Sbjct: 800  SSDSEKWFAAMGDEMESLHKNQTWDLVIQPSGRKIITCKWVFKKK 844


>dbj|BAB09923.1| copia-like retrotransposable element [Arabidopsis thaliana]
          Length = 1342

 Score = 80.5 bits (197), Expect = 4e-13
 Identities = 61/225 (27%), Positives = 99/225 (44%), Gaps = 2/225 (0%)
 Frame = -3

Query: 671  FAHQKEG*LDPRSKKGVFIGYPNGGQGL*DIAXXXXXXXXVISRDVVFNELDMSCLKANI 492
            + H  +G L+PR+KKG+F+GYP+G +              V+SRD+VF E  M       
Sbjct: 660  YIHSDQGKLNPRAKKGIFLGYPDGVKRF--KVWLLEDRKCVVSRDIVFQENQMYKELQKN 717

Query: 491  DLVNATYFSLVWNVPIKVEDTPVPTFECTFTPETSNESDNPGSILENDLLKXXXXXXXXX 312
            D+              +VE T +     +   E  +E  +  +  +    +         
Sbjct: 718  DMSEED------KQLTEVERTLIELKNLSADDENQSEGGDNSNQEQASTTRSASKDKQVE 771

Query: 311  XXEAQTHPLDDYQLTRDRARRTSK*PDRY--GNSYIVSFAIVATSFVKEKEPMYFTNVVK 138
              ++    L++Y L RDR RR  + P R+   +  +V FA+  T   +  EP  +   ++
Sbjct: 772  ETDSDDDCLENYLLARDRIRRQIRAPQRFVEEDDSLVGFALTMTEDGEVYEPETYEEAMR 831

Query: 137  NPNYSLWIHDMREEMFSFHKNKTWVLVPKPAKQKLNDCK*IFKIK 3
            +P    W     EEM S  KN TW ++ KP  +++  CK IFK K
Sbjct: 832  SPECEKWKQATIEEMDSMKKNDTWDVIDKPEGKRVIGCKWIFKRK 876


>gb|AAD23690.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1333

 Score = 80.1 bits (196), Expect = 6e-13
 Identities = 69/235 (29%), Positives = 108/235 (45%), Gaps = 12/235 (5%)
 Frame = -3

Query: 671  FAHQKEG*LDPRSKKGVFIGYPNGGQGL*DIAXXXXXXXXVISRDVVFNE----LDM--- 513
            F H  +G L+PR+KKG+ +GYP G +G             V+SR+V+F E     DM   
Sbjct: 651  FVHTDDGKLNPRAKKGILVGYPIGVKGY--KIWLLEEKKCVVSRNVIFQENASYKDMMQS 708

Query: 512  -SCLKANIDLVNATYFSLVWN---VPIKVEDTPVPTFECTFTPE-TSNESDNPGSILEND 348
                K   +   ++Y  L  +   V     D P+   +  F P   + ++ + G   E D
Sbjct: 709  KDAEKDENEAPPSSYLDLDLDHEEVITSGGDDPIVEAQSPFNPSPATTQTYSEGVNSETD 768

Query: 347  LLKXXXXXXXXXXXEAQTHPLDDYQLTRDRARRTSK*PDRYGNSYIVSFAIVATSFVKEK 168
            +++                PL  YQL RDR RRT + P R+ +   ++ A+  T    E 
Sbjct: 769  IIQS---------------PLS-YQLVRDRDRRTIRAPVRFDDEDYLAEALYTTEDSGEI 812

Query: 167  EPMYFTNVVKNPNYSLWIHDMREEMFSFHKNKTWVLVPKPAKQKLNDCK*IFKIK 3
            EP  ++   ++ N++ W   M EEM S  KN TW +V +P  QK+   + I+K K
Sbjct: 813  EPADYSEAKRSMNWNKWKLAMNEEMESQIKNHTWTVVKRPQHQKVIGSRWIYKFK 867


>pir||S23319 hypothetical protein 2 - Arabidopsis thaliana retrotransposon Ta1-2
            (strain Landsberg) (fragment) gi|16384|emb|CAA37924.1|
            unnamed protein product [Arabidopsis thaliana]
          Length = 1084

 Score = 79.7 bits (195), Expect = 7e-13
 Identities = 65/238 (27%), Positives = 100/238 (42%), Gaps = 15/238 (6%)
 Frame = -3

Query: 671  FAHQKEG*LDPRSKKGVFIGYPNGGQGL*DIAXXXXXXXXVISRDVVFNELDMSCLKANI 492
            + H  +G L PR+ KG+FIGYP+G +G             VISR+V+F+E          
Sbjct: 582  YVHIDQGKLKPRALKGIFIGYPSGTKGY--KIWLLEEQKCVISRNVLFHE---------- 629

Query: 491  DLVNATYFSLVWNVPIKVEDTPVPTFE-CTFTPETSNESDNPGSILENDLLKXXXXXXXX 315
                     LV+   I+ E       E  + +  T  +   PG++    +++        
Sbjct: 630  --------ELVYKDTIEKERVVESEAEPASHSKSTLIKMKTPGNLNSGGVIQVSDEEESD 681

Query: 314  XXXEAQTHP--------------LDDYQLTRDRARRTSK*PDRYGNSYIVSFAIVATSFV 177
               + +  P              L +YQL RDR RR    P R+     V+FA+V    +
Sbjct: 682  ESVDEEQEPEPQVELPETQTTSSLANYQLVRDRERRQIHPPARFTEESGVAFALVTVETL 741

Query: 176  KEKEPMYFTNVVKNPNYSLWIHDMREEMFSFHKNKTWVLVPKPAKQKLNDCK*IFKIK 3
              +EP  +     +  +  W     EE  S  KN TWVLV KP  +K+  C+ +FK+K
Sbjct: 742  SMEEPQSYQEATSDKEWKKWKLATHEEKNSLIKNGTWVLVDKPKDRKIIGCRWLFKMK 799


>gb|AAD32759.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1356

 Score = 76.3 bits (186), Expect = 8e-12
 Identities = 66/240 (27%), Positives = 99/240 (41%), Gaps = 17/240 (7%)
 Frame = -3

Query: 671  FAHQKEG*LDPRSKKGVFIGYPNGGQGL*DIAXXXXXXXXVISRDVVFNE----LDMSCL 504
            F H  +G L+PR+KKGV IGYP G +G             V+SR+++F E     D+   
Sbjct: 673  FVHTDDGKLEPRAKKGVLIGYPVGVKGY--KVWILDERKCVVSRNIIFQENAVYKDLMQR 730

Query: 503  KANI----DLVNATY--FSLVWNVPI-------KVEDTPVPTFECTFTPETSNESDNPGS 363
            + N+    D    +Y  F L     +        V   P P      TP T + +D+  S
Sbjct: 731  QENVSTEEDDQTGSYLEFDLEAERDVISGGDQEMVNTIPAPESPVVSTPTTQDTNDDEDS 790

Query: 362  ILENDLLKXXXXXXXXXXXEAQTHPLDDYQLTRDRARRTSK*PDRYGNSYIVSFAIVATS 183
             +    L                     Y L RDR +R  + P R+ +    + A+  T 
Sbjct: 791  DVNQSPLS--------------------YHLVRDRDKREIRAPRRFDDEDYYAEALYTTE 830

Query: 182  FVKEKEPMYFTNVVKNPNYSLWIHDMREEMFSFHKNKTWVLVPKPAKQKLNDCK*IFKIK 3
              +  EP  +     + N+  W   M EE+ S  KN TW +V +P  Q++  C+ IFK K
Sbjct: 831  DGEAVEPENYRKAKLDANFDKWKLAMDEEIDSQEKNNTWTIVTRPENQRIIGCRWIFKYK 890


>gb|AAF19226.1|AC007505_2 Highly similar to Ta1-3 polyprotein [Arabidopsis thaliana]
          Length = 1356

 Score = 74.7 bits (182), Expect = 2e-11
 Identities = 66/242 (27%), Positives = 103/242 (42%), Gaps = 19/242 (7%)
 Frame = -3

Query: 671  FAHQKEG*LDPRSKKGVFIGYPNGGQGL*DIAXXXXXXXXVISRDVVFNELDMSCLKANI 492
            + HQ +G L PR+ KG F+GYP G +G             VISR+VVF E          
Sbjct: 672  YVHQDQGKLKPRALKGFFLGYPAGTKGY--KVWLLEEEKCVISRNVVFQE---------- 719

Query: 491  DLVNATYFSLVW-NVPIKVEDTPVPTFECTFTPETSN----ESDNPGSILE--------- 354
                    S+V+ ++ +K +DT     + T + E       E+   G +++         
Sbjct: 720  --------SVVYRDLKVKEDDTDNLNQKETTSSEVEQNKFAEASGSGGVIQLQSDSEPIT 771

Query: 353  -----NDLLKXXXXXXXXXXXEAQTHPLDDYQLTRDRARRTSK*PDRYGNSYIVSFAIVA 189
                 +D  +             +T  L  Y+L RDR RR    P R+     V+FA+V 
Sbjct: 772  EGEQSSDSEEEVEYSEKTQETPKRTG-LTTYKLARDRVRRNINPPTRFTEESSVTFALVV 830

Query: 188  TSFVKEKEPMYFTNVVKNPNYSLWIHDMREEMFSFHKNKTWVLVPKPAKQKLNDCK*IFK 9
                  +EP  +   +++ +   W     +EM S  KN TW LV KP  +K+  C+ +FK
Sbjct: 831  VENCIVQEPQSYQEAMESQDCEKWDMATHDEMDSLMKNGTWDLVDKPKDRKIIGCRWLFK 890

Query: 8    IK 3
            +K
Sbjct: 891  LK 892


>emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera]
          Length = 1562

 Score = 74.3 bits (181), Expect = 3e-11
 Identities = 63/231 (27%), Positives = 98/231 (42%), Gaps = 8/231 (3%)
 Frame = -3

Query: 671  FAHQKEG*LDPRSKKGVFIGYPNGGQGL*DIAXXXXXXXXVISRDVVFNELDMSCLKANI 492
            +AH  +G L+PR+ K +F+GY  G +G             +ISRDV F+E  M   +   
Sbjct: 766  YAHVSDGKLEPRAMKCIFLGYATGVKGYRLWCTEDRTPKFIISRDVTFDESAMFGQRKEF 825

Query: 491  -DLVNATYFSLVWNVPIKVE-DTPVPTFECTFTPETSNESDNPGSILENDLLKXXXXXXX 318
             DL   +   L  N  ++ E D P+         +TS E      +++ +          
Sbjct: 826  GDLAGTSKTDLGANQKVEFEVDAPMENG----VDDTSEEQP----VIDQN---------- 867

Query: 317  XXXXEAQTHPLDDYQLTRDRARRTSK*PDRYGNSYI------VSFAIVATSFVKEKEPMY 156
                       D   +   R RR  + P RY +         V+FA+     +  +EP  
Sbjct: 868  -----------DSQSIAAHRPRREIRRPMRYVDCVSANITNPVAFALAVAEEIGREEPRS 916

Query: 155  FTNVVKNPNYSLWIHDMREEMFSFHKNKTWVLVPKPAKQKLNDCK*IFKIK 3
            +   +++ +   W+  M +EM S  KN+TW LVP P   K  DCK +FKIK
Sbjct: 917  YKEAMESKDSKKWLSSMDDEMASLRKNQTWELVPLPEGVKPVDCKWLFKIK 967


>emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]
          Length = 1643

 Score = 74.3 bits (181), Expect = 3e-11
 Identities = 63/231 (27%), Positives = 98/231 (42%), Gaps = 8/231 (3%)
 Frame = -3

Query: 671  FAHQKEG*LDPRSKKGVFIGYPNGGQGL*DIAXXXXXXXXVISRDVVFNELDMSCLKANI 492
            +AH  +G L+PR+ K +F+GY  G +G             +ISRDV F+E  M   +   
Sbjct: 979  YAHVSDGKLEPRAMKCIFLGYATGVKGYRLWCTEDRTPKFIISRDVTFDESAMFGQRKEF 1038

Query: 491  -DLVNATYFSLVWNVPIKVE-DTPVPTFECTFTPETSNESDNPGSILENDLLKXXXXXXX 318
             DL   +   L  N  ++ E D P+         +TS E      +++ +          
Sbjct: 1039 GDLAGTSKTDLGANQKVEFEVDAPMENG----VDDTSEEQP----VIDQN---------- 1080

Query: 317  XXXXEAQTHPLDDYQLTRDRARRTSK*PDRYGNSYI------VSFAIVATSFVKEKEPMY 156
                       D   +   R RR  + P RY +         V+FA+     +  +EP  
Sbjct: 1081 -----------DSQSIAAXRPRREIRRPMRYVDCVSANITNPVAFALAVAEEIGREEPRS 1129

Query: 155  FTNVVKNPNYSLWIHDMREEMFSFHKNKTWVLVPKPAKQKLNDCK*IFKIK 3
            +   +++ +   W+  M +EM S  KN+TW LVP P   K  DCK +FKIK
Sbjct: 1130 YKEAMESKDSKKWLSSMDDEMASLRKNQTWELVPLPEGVKPVDCKWLFKIK 1180


>emb|CAN74382.1| hypothetical protein VITISV_007945 [Vitis vinifera]
          Length = 444

 Score = 73.2 bits (178), Expect = 7e-11
 Identities = 64/230 (27%), Positives = 106/230 (46%), Gaps = 7/230 (3%)
 Frame = -3

Query: 671 FAHQKEG*LDPRSKKGVFIGYPNGGQGL*DIAXXXXXXXXVISRDVVFNELDM------- 513
           +AHQ EG L+PR++K +F+GY +G +G  +           IS DVVF E +        
Sbjct: 54  YAHQNEGKLEPRARKCIFVGYLDGVKG--NKLWCPTTKKCFISMDVVFRECEFLKDDRET 111

Query: 512 SCLKANIDLVNATYFSLVWNVPIKVEDTPVPTFECTFTPETSNESDNPGSILENDLLKXX 333
           S  K N ++ +   F +   +  K++ T     E    P+            + D+    
Sbjct: 112 STNKENGEVKDKLEFQM--ELKDKIDAT-----EFEIEPQ------------QYDI---- 148

Query: 332 XXXXXXXXXEAQTHPLDDYQLTRDRARRTSK*PDRYGNSYIVSFAIVATSFVKEKEPMYF 153
                         PL++YQLTRDRAR++ +   R+G + +V+ ++     ++  EP  +
Sbjct: 149 --------------PLENYQLTRDRARKSIRPLQRFGYNDMVACSLSIGKELRCAEPKNY 194

Query: 152 TNVVKNPNYSLWIHDMREEMFSFHKNKTWVLVPKPAKQKLNDCK*IFKIK 3
              V   +   W++ M+EE  S  +N T +LV KP   K+  CK +FK K
Sbjct: 195 LETVSCKDSPKWMNAMQEEFESLFQNGTRLLVDKPKGCKVVGCKWVFKKK 244


>gb|AAM08562.1|AC092749_15 Putative retroelement [Oryza sativa Japonica Group]
            gi|20087076|gb|AAM10749.1|AC112514_2 Putative
            retroelement [Oryza sativa Japonica Group]
          Length = 1225

 Score = 72.0 bits (175), Expect = 2e-10
 Identities = 64/225 (28%), Positives = 104/225 (46%), Gaps = 2/225 (0%)
 Frame = -3

Query: 671  FAHQKEG*LDPRSKKGVFIGYPNGGQGL*DIAXXXXXXXXVISRDVVFNELDMSCLKANI 492
            +AH     L+PR+ K +F+GYP+G +G             VISR+VVF+E  M   K + 
Sbjct: 628  YAHVDNSKLEPRAIKCIFLGYPSGVKGY--KLWCPETKKVVISRNVVFHESVMLHDKPST 685

Query: 491  DLVNATYFSLVWNVPIKVEDTPVPTFECTFTPETSNESDNPGSILENDLLKXXXXXXXXX 312
                        NVP++ ++      E   +   + E +N    L+  +++         
Sbjct: 686  ------------NVPVESQEKASVQVEHLISSGHAPEKENVAINLDAPVIEDSDSSI--- 730

Query: 311  XXEAQTHPLDDYQLTRDRARRTSK*PDRY-GNSYIVSFAI-VATSFVKEKEPMYFTNVVK 138
                Q  P   + + +D+ +R  K P RY   + IV++A+ VA       EP  +++ + 
Sbjct: 731  ---VQQSP--KHSIAKDKPKRNIKPPRRYIEEANIVAYALSVAEEIEGNVEPSTYSDAIV 785

Query: 137  NPNYSLWIHDMREEMFSFHKNKTWVLVPKPAKQKLNDCK*IFKIK 3
            + + + WI  M +EM S  KN TW LV  P ++K   CK IFK K
Sbjct: 786  SDDCNRWITAMHDEMESLEKNHTWELVKLPKEKKPIRCKWIFKRK 830


>gb|AAP53216.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1262

 Score = 72.0 bits (175), Expect = 2e-10
 Identities = 64/225 (28%), Positives = 104/225 (46%), Gaps = 2/225 (0%)
 Frame = -3

Query: 671  FAHQKEG*LDPRSKKGVFIGYPNGGQGL*DIAXXXXXXXXVISRDVVFNELDMSCLKANI 492
            +AH     L+PR+ K +F+GYP+G +G             VISR+VVF+E  M   K + 
Sbjct: 665  YAHVDNSKLEPRAIKCIFLGYPSGVKGY--KLWCPETKKVVISRNVVFHESVMLHDKPST 722

Query: 491  DLVNATYFSLVWNVPIKVEDTPVPTFECTFTPETSNESDNPGSILENDLLKXXXXXXXXX 312
                        NVP++ ++      E   +   + E +N    L+  +++         
Sbjct: 723  ------------NVPVESQEKASVQVEHLISSGHAPEKENVAINLDAPVIEDSDSSI--- 767

Query: 311  XXEAQTHPLDDYQLTRDRARRTSK*PDRY-GNSYIVSFAI-VATSFVKEKEPMYFTNVVK 138
                Q  P   + + +D+ +R  K P RY   + IV++A+ VA       EP  +++ + 
Sbjct: 768  ---VQQSP--KHSIAKDKPKRNIKPPRRYIEEANIVAYALSVAEEIEGNVEPSTYSDAIV 822

Query: 137  NPNYSLWIHDMREEMFSFHKNKTWVLVPKPAKQKLNDCK*IFKIK 3
            + + + WI  M +EM S  KN TW LV  P ++K   CK IFK K
Sbjct: 823  SDDCNRWITAMHDEMESLEKNHTWELVKLPKEKKPIRCKWIFKRK 867