BLASTX nr result
ID: Catharanthus22_contig00010544
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus22_contig00010544
(332 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AGI63880.1| geranylgeranyl diphosphate synthase IDS6 [Cathara... 184 8e-45
sp|Q42698.1|GGPPS_CATRO RecName: Full=Geranylgeranyl pyrophospha... 69 6e-10
gb|AEI53622.1| chloroplast geranylgeranyl diphosphate synthase [... 69 6e-10
gb|AGL91645.1| geranyl diphosphate synthase large subunit [Catha... 69 8e-10
ref|XP_002310785.1| hypothetical protein POPTR_0007s12330g [Popu... 64 2e-08
ref|XP_002884145.1| geranylgeranyl diphosphate synthase [Arabido... 62 6e-08
gb|ACF37217.1| geranylgeranyl diphosphate synthase [Ipomoea bata... 61 2e-07
dbj|BAA86285.1| geranylgeranyl pyrophosphate synthase [Scoparia ... 60 2e-07
ref|XP_003554194.1| PREDICTED: geranylgeranyl pyrophosphate synt... 60 3e-07
gb|AAF08793.1|AF182828_1 geranyl diphosphate synthase large subu... 60 4e-07
gb|ABW06960.1| geranylgeranyl diphosphate synthase [Corylus avel... 60 4e-07
gb|ABR15420.1| geranyl pyrophosphate synthase large subunit [Men... 60 4e-07
ref|XP_006282650.1| hypothetical protein CARUB_v10005063mg [Caps... 59 5e-07
ref|XP_006411959.1| hypothetical protein EUTSA_v10025481mg [Eutr... 59 7e-07
ref|XP_002869021.1| hypothetical protein ARALYDRAFT_490952 [Arab... 59 7e-07
ref|XP_006409129.1| hypothetical protein EUTSA_v10022750mg [Eutr... 59 9e-07
gb|AGL91649.1| geranylgeranyl diphosphate synthase [Catharanthus... 59 9e-07
pdb|3KRA|A Chain A, Mint Heterotetrameric Geranyl Pyrophosphate ... 59 9e-07
gb|ABK28497.1| unknown [Arabidopsis thaliana] 59 9e-07
ref|NP_179452.1| geranylgeranyl pyrophosphate synthase 7 [Arabid... 59 9e-07
>gb|AGI63880.1| geranylgeranyl diphosphate synthase IDS6 [Catharanthus roseus]
Length = 343
Score = 184 bits (468), Expect = 8e-45
Identities = 91/94 (96%), Positives = 91/94 (96%)
Frame = +2
Query: 50 MSIKMFSANSIYNFSSGRSTCSFPLLLPLNTNGGSLSIPNSRNQFKKSVCCSKESEFDFN 229
MSIKMFSANSIYNFSS RSTCSFPLLLPL TNGGSL IPNSRNQFKKSVCCSKESEFDFN
Sbjct: 1 MSIKMFSANSIYNFSSSRSTCSFPLLLPLKTNGGSLFIPNSRNQFKKSVCCSKESEFDFN 60
Query: 230 AYWLGKINSVNKALEATVSLKEPLKLHEAMRYSL 331
AYWLGKINSVNKALEATVSLKEPLKLHEAMRYSL
Sbjct: 61 AYWLGKINSVNKALEATVSLKEPLKLHEAMRYSL 94
>sp|Q42698.1|GGPPS_CATRO RecName: Full=Geranylgeranyl pyrophosphate synthase, chloroplastic;
Short=GGPP synthase; Short=GGPS; AltName:
Full=(2E,6E)-farnesyl diphosphate synthase; AltName:
Full=Dimethylallyltranstransferase; AltName:
Full=Farnesyl diphosphate synthase; AltName:
Full=Farnesyltranstransferase; AltName:
Full=Geranyltranstransferase; Flags: Precursor
gi|1063276|emb|CAA63486.1| geranylgeranyl pyrophosphate
synthase [Catharanthus roseus]
Length = 357
Score = 68.9 bits (167), Expect = 6e-10
Identities = 33/54 (61%), Positives = 40/54 (74%)
Frame = +2
Query: 170 SRNQFKKSVCCSKESEFDFNAYWLGKINSVNKALEATVSLKEPLKLHEAMRYSL 331
S ++ KK V S S FDF AY +GK NSVNKALE V ++EPLK+HE+MRYSL
Sbjct: 48 SESKSKKEVAFSSSSSFDFKAYMIGKANSVNKALEDAVLVREPLKIHESMRYSL 101
>gb|AEI53622.1| chloroplast geranylgeranyl diphosphate synthase [Catharanthus
roseus]
Length = 383
Score = 68.9 bits (167), Expect = 6e-10
Identities = 33/54 (61%), Positives = 40/54 (74%)
Frame = +2
Query: 170 SRNQFKKSVCCSKESEFDFNAYWLGKINSVNKALEATVSLKEPLKLHEAMRYSL 331
S ++ KK V S S FDF AY +GK NSVNKALE V ++EPLK+HE+MRYSL
Sbjct: 74 SESKSKKEVAFSSSSSFDFKAYMIGKANSVNKALEDAVLVREPLKIHESMRYSL 127
>gb|AGL91645.1| geranyl diphosphate synthase large subunit [Catharanthus roseus]
Length = 383
Score = 68.6 bits (166), Expect = 8e-10
Identities = 33/54 (61%), Positives = 40/54 (74%)
Frame = +2
Query: 170 SRNQFKKSVCCSKESEFDFNAYWLGKINSVNKALEATVSLKEPLKLHEAMRYSL 331
S ++ KK V S S FDF AY +GK NSVNKALE V ++EPLK+HE+MRYSL
Sbjct: 74 SESKSKKEVAFSSTSSFDFKAYMIGKANSVNKALEDAVLVREPLKIHESMRYSL 127
>ref|XP_002310785.1| hypothetical protein POPTR_0007s12330g [Populus trichocarpa]
gi|222853688|gb|EEE91235.1| hypothetical protein
POPTR_0007s12330g [Populus trichocarpa]
Length = 365
Score = 64.3 bits (155), Expect = 2e-08
Identities = 42/99 (42%), Positives = 55/99 (55%), Gaps = 14/99 (14%)
Frame = +2
Query: 77 SIYNFSSGRSTCSFPLLLPLNTNGGSLSIPNSRNQFKK---SVCC-----------SKES 214
SI N +G S P+ L+ SL IP+ + +K S+C ++
Sbjct: 13 SIINKDTGPR--SIPISNFLSPGSKSLQIPSVHQKQRKPMSSICAVLAKEETLQEDQRKP 70
Query: 215 EFDFNAYWLGKINSVNKALEATVSLKEPLKLHEAMRYSL 331
FDF +Y L K NSVNKAL+A VSLKEP K+HE+MRYSL
Sbjct: 71 TFDFKSYMLQKANSVNKALDAAVSLKEPAKIHESMRYSL 109
>ref|XP_002884145.1| geranylgeranyl diphosphate synthase [Arabidopsis lyrata subsp.
lyrata] gi|297329985|gb|EFH60404.1| geranylgeranyl
diphosphate synthase [Arabidopsis lyrata subsp. lyrata]
Length = 329
Score = 62.4 bits (150), Expect = 6e-08
Identities = 31/51 (60%), Positives = 40/51 (78%), Gaps = 4/51 (7%)
Frame = +2
Query: 191 SVCCSKES----EFDFNAYWLGKINSVNKALEATVSLKEPLKLHEAMRYSL 331
SV +ES +FDF +Y +GK NSVNKAL++ VSL+EP+K+HEAMRYSL
Sbjct: 36 SVVTGEESIIHDKFDFMSYMIGKANSVNKALDSAVSLREPIKIHEAMRYSL 86
>gb|ACF37217.1| geranylgeranyl diphosphate synthase [Ipomoea batatas]
Length = 363
Score = 60.8 bits (146), Expect = 2e-07
Identities = 29/41 (70%), Positives = 34/41 (82%)
Frame = +2
Query: 209 ESEFDFNAYWLGKINSVNKALEATVSLKEPLKLHEAMRYSL 331
E++ DF AY LGK SVNKALEA V LKEPL++HE+MRYSL
Sbjct: 67 ENKLDFKAYVLGKAESVNKALEAAVLLKEPLRVHESMRYSL 107
>dbj|BAA86285.1| geranylgeranyl pyrophosphate synthase [Scoparia dulcis]
Length = 351
Score = 60.5 bits (145), Expect = 2e-07
Identities = 29/40 (72%), Positives = 33/40 (82%)
Frame = +2
Query: 212 SEFDFNAYWLGKINSVNKALEATVSLKEPLKLHEAMRYSL 331
S FDF Y L K +SVNKALE+ VSLKEPLK+HE+MRYSL
Sbjct: 56 STFDFKKYMLEKASSVNKALESAVSLKEPLKIHESMRYSL 95
>ref|XP_003554194.1| PREDICTED: geranylgeranyl pyrophosphate synthase,
chloroplastic-like [Glycine max]
Length = 343
Score = 60.1 bits (144), Expect = 3e-07
Identities = 28/43 (65%), Positives = 34/43 (79%)
Frame = +2
Query: 203 SKESEFDFNAYWLGKINSVNKALEATVSLKEPLKLHEAMRYSL 331
S FDF AY L KIN+VN+AL+A V+L+EP KLHEAMRY+L
Sbjct: 40 SSAPNFDFKAYMLDKINTVNRALDAAVALREPRKLHEAMRYTL 82
>gb|AAF08793.1|AF182828_1 geranyl diphosphate synthase large subunit [Mentha x piperita]
gi|10637876|emb|CAC10561.1| gpp synthase large subunit
[Mentha x piperita] gi|158979013|gb|ABW86879.1| geranyl
pyrophosphate synthase large subunit [Mentha x piperita]
Length = 377
Score = 59.7 bits (143), Expect = 4e-07
Identities = 33/73 (45%), Positives = 40/73 (54%)
Frame = +2
Query: 113 SFPLLLPLNTNGGSLSIPNSRNQFKKSVCCSKESEFDFNAYWLGKINSVNKALEATVSLK 292
S PL P + ++ K S FDF+ Y L K SVNKALEA V +K
Sbjct: 49 SSPLKAPATFSVSAVYTKEGSEIRDKDPAPSTSPAFDFDGYMLRKAKSVNKALEAAVQMK 108
Query: 293 EPLKLHEAMRYSL 331
EPLK+HE+MRYSL
Sbjct: 109 EPLKIHESMRYSL 121
>gb|ABW06960.1| geranylgeranyl diphosphate synthase [Corylus avellana]
Length = 373
Score = 59.7 bits (143), Expect = 4e-07
Identities = 44/97 (45%), Positives = 52/97 (53%), Gaps = 17/97 (17%)
Frame = +2
Query: 92 SSGRSTCSFPLLLPLNTNGGSLSIPNSRNQFKKSVCCS------------KESE-----F 220
S ST SF +L PL S IP R + SV S +ESE F
Sbjct: 22 SRSMSTPSFQILHPLKNIPISF-IPPKRRRSISSVSVSAVLTKEDTLREEEESESEARTF 80
Query: 221 DFNAYWLGKINSVNKALEATVSLKEPLKLHEAMRYSL 331
+F Y L K NSVN+AL+A VSLK+P K+HEAMRYSL
Sbjct: 81 NFKTYMLQKANSVNQALDAAVSLKDPRKIHEAMRYSL 117
>gb|ABR15420.1| geranyl pyrophosphate synthase large subunit [Mentha canadensis]
Length = 377
Score = 59.7 bits (143), Expect = 4e-07
Identities = 33/73 (45%), Positives = 40/73 (54%)
Frame = +2
Query: 113 SFPLLLPLNTNGGSLSIPNSRNQFKKSVCCSKESEFDFNAYWLGKINSVNKALEATVSLK 292
S PL P + ++ K S FDF+ Y L K SVNKALEA V +K
Sbjct: 49 SSPLKAPATFSVSAVYTKEGSEIRDKDPAPSTSPAFDFDGYMLRKAKSVNKALEAAVQMK 108
Query: 293 EPLKLHEAMRYSL 331
EPLK+HE+MRYSL
Sbjct: 109 EPLKIHESMRYSL 121
>ref|XP_006282650.1| hypothetical protein CARUB_v10005063mg [Capsella rubella]
gi|482551355|gb|EOA15548.1| hypothetical protein
CARUB_v10005063mg [Capsella rubella]
Length = 375
Score = 59.3 bits (142), Expect = 5e-07
Identities = 28/54 (51%), Positives = 37/54 (68%)
Frame = +2
Query: 170 SRNQFKKSVCCSKESEFDFNAYWLGKINSVNKALEATVSLKEPLKLHEAMRYSL 331
++ + S S S FDF +Y + K SVNKAL++ V L+EPLK+HEAMRYSL
Sbjct: 63 TKEDSRSSSASSSSSPFDFMSYIISKAESVNKALDSAVPLREPLKIHEAMRYSL 116
>ref|XP_006411959.1| hypothetical protein EUTSA_v10025481mg [Eutrema salsugineum]
gi|557113129|gb|ESQ53412.1| hypothetical protein
EUTSA_v10025481mg [Eutrema salsugineum]
Length = 376
Score = 58.9 bits (141), Expect = 7e-07
Identities = 30/60 (50%), Positives = 38/60 (63%)
Frame = +2
Query: 152 SLSIPNSRNQFKKSVCCSKESEFDFNAYWLGKINSVNKALEATVSLKEPLKLHEAMRYSL 331
S S+ + K S S FDF +Y + K SVNKAL++ V L+EPLK+HEAMRYSL
Sbjct: 58 SSSVVTKEDNRKSSSSSFSSSSFDFMSYIIRKAESVNKALDSAVPLREPLKIHEAMRYSL 117
>ref|XP_002869021.1| hypothetical protein ARALYDRAFT_490952 [Arabidopsis lyrata subsp.
lyrata] gi|297314857|gb|EFH45280.1| hypothetical protein
ARALYDRAFT_490952 [Arabidopsis lyrata subsp. lyrata]
Length = 379
Score = 58.9 bits (141), Expect = 7e-07
Identities = 37/82 (45%), Positives = 49/82 (59%), Gaps = 2/82 (2%)
Frame = +2
Query: 92 SSGRSTCSFPLLLPLNTNGGSLSIPNSRNQFKK--SVCCSKESEFDFNAYWLGKINSVNK 265
SS T + P+ L S SI S + K ++ S+ S FDF +Y + K SVNK
Sbjct: 38 SSSPITHTKPISLRSKRTVSSSSIETSSSVVTKEDNLHKSEPSSFDFMSYIITKAESVNK 97
Query: 266 ALEATVSLKEPLKLHEAMRYSL 331
AL++ V L+EPLK+HEAMRYSL
Sbjct: 98 ALDSAVPLREPLKIHEAMRYSL 119
>ref|XP_006409129.1| hypothetical protein EUTSA_v10022750mg [Eutrema salsugineum]
gi|557110291|gb|ESQ50582.1| hypothetical protein
EUTSA_v10022750mg [Eutrema salsugineum]
Length = 361
Score = 58.5 bits (140), Expect = 9e-07
Identities = 25/39 (64%), Positives = 35/39 (89%)
Frame = +2
Query: 215 EFDFNAYWLGKINSVNKALEATVSLKEPLKLHEAMRYSL 331
+FDF +Y +GK +SVN+AL++ VSL+EP+K+HEAMRYSL
Sbjct: 67 KFDFMSYMIGKADSVNQALDSAVSLREPIKIHEAMRYSL 105
>gb|AGL91649.1| geranylgeranyl diphosphate synthase [Catharanthus roseus]
Length = 306
Score = 58.5 bits (140), Expect = 9e-07
Identities = 27/38 (71%), Positives = 31/38 (81%)
Frame = +2
Query: 218 FDFNAYWLGKINSVNKALEATVSLKEPLKLHEAMRYSL 331
FDF AY KINSVN+AL+ V LKEP+K+HEAMRYSL
Sbjct: 13 FDFKAYMFEKINSVNQALDIAVPLKEPIKIHEAMRYSL 50
>pdb|3KRA|A Chain A, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium gi|289526780|pdb|3KRA|D Chain D,
Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium gi|289526781|pdb|3KRC|A Chain A,
Mint Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Ipp gi|289526784|pdb|3KRC|D Chain D, Mint
Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Ipp gi|289526785|pdb|3KRF|A Chain A, Mint
Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Magnesium, Ipp, And Dmaspp (i)
gi|289526788|pdb|3KRF|D Chain D, Mint Heterotetrameric
Geranyl Pyrophosphate Synthase In Complex With
Magnesium, Ipp, And Dmaspp (i) gi|289526789|pdb|3KRO|A
Chain A, Mint Heterotetrameric Geranyl Pyrophosphate
Synthase In Complex With Magnesium, Ipp, And Dmaspp (ii)
gi|289526792|pdb|3KRO|D Chain D, Mint Heterotetrameric
Geranyl Pyrophosphate Synthase In Complex With
Magnesium, Ipp, And Dmaspp (ii) gi|289526793|pdb|3KRP|A
Chain A, Mint Heterotetrameric Geranyl Pyrophosphate
Synthase In Complex With Magnesium And Gpp
gi|289526796|pdb|3KRP|D Chain D, Mint Heterotetrameric
Geranyl Pyrophosphate Synthase In Complex With Magnesium
And Gpp gi|310942863|pdb|3OAB|A Chain A, Mint Deletion
Mutant Of Heterotetrameric Geranyl Pyrophosphate
Synthase In Complex With Ligands gi|310942866|pdb|3OAB|D
Chain D, Mint Deletion Mutant Of Heterotetrameric
Geranyl Pyrophosphate Synthase In Complex With Ligands
gi|310942867|pdb|3OAC|A Chain A, Mint Deletion Mutant Of
Heterotetrameric Geranyl Pyrophosphate Synthase In
Complex With Ligands gi|310942870|pdb|3OAC|D Chain D,
Mint Deletion Mutant Of Heterotetrameric Geranyl
Pyrophosphate Synthase In Complex With Ligands
Length = 295
Score = 58.5 bits (140), Expect = 9e-07
Identities = 27/38 (71%), Positives = 31/38 (81%)
Frame = +2
Query: 218 FDFNAYWLGKINSVNKALEATVSLKEPLKLHEAMRYSL 331
FDF+ Y L K SVNKALEA V +KEPLK+HE+MRYSL
Sbjct: 2 FDFDGYMLRKAKSVNKALEAAVQMKEPLKIHESMRYSL 39
>gb|ABK28497.1| unknown [Arabidopsis thaliana]
Length = 348
Score = 58.5 bits (140), Expect = 9e-07
Identities = 24/40 (60%), Positives = 35/40 (87%)
Frame = +2
Query: 212 SEFDFNAYWLGKINSVNKALEATVSLKEPLKLHEAMRYSL 331
+ FDF +Y +GK N+VN+AL++ VSL+EP+K+HEA+RYSL
Sbjct: 51 NHFDFTSYMIGKANAVNEALDSAVSLREPIKIHEAIRYSL 90
>ref|NP_179452.1| geranylgeranyl pyrophosphate synthase 7 [Arabidopsis thaliana]
gi|75268021|sp|Q9ZU77.1|GGPP7_ARATH RecName:
Full=Geranylgeranyl pyrophosphate synthase 7,
chloroplastic; Short=GGPP synthase 7; Short=GGPS7;
AltName: Full=(2E,6E)-farnesyl diphosphate synthase 7;
AltName: Full=Dimethylallyltranstransferase 7; AltName:
Full=Farnesyl diphosphate synthase 7; AltName:
Full=Farnesyltranstransferase 7; AltName:
Full=Geranyltranstransferase 7; Flags: Precursor
gi|4217998|gb|AAD12206.1| putative geranylgeranyl
pyrophosphate synthase [Arabidopsis thaliana]
gi|91806194|gb|ABE65825.1| geranylgeranyl pyrophosphate
synthase/GGPP synthetase/farnesyltranstransferase
[Arabidopsis thaliana] gi|330251692|gb|AEC06786.1|
geranylgeranyl pyrophosphate synthase 7 [Arabidopsis
thaliana]
Length = 347
Score = 58.5 bits (140), Expect = 9e-07
Identities = 24/40 (60%), Positives = 35/40 (87%)
Frame = +2
Query: 212 SEFDFNAYWLGKINSVNKALEATVSLKEPLKLHEAMRYSL 331
+ FDF +Y +GK N+VN+AL++ VSL+EP+K+HEA+RYSL
Sbjct: 51 NHFDFTSYMIGKANAVNEALDSAVSLREPIKIHEAIRYSL 90