BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Catharanthus22_contig00010306
         (441 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABW81176.1| non-LTR reverse transcriptase [Arabidopsis cebenn...    51   9e-08
gb|AAD37019.2| putative non-LTR retrolelement reverse transcript...    44   1e-06

>gb|ABW81176.1| non-LTR reverse transcriptase [Arabidopsis cebennensis]
          Length = 464

 Score = 51.2 bits (121), Expect(2) = 9e-08
 Identities = 20/52 (38%), Positives = 36/52 (69%)
 Frame = +3

Query: 168 ERCTEFFHTSVISKQAKRQIIKLNDEQGEWIKDQNQLKDKARTFYQRLYNAE 323
           +R T++FHTS I ++ + QI  L D++G+W+++  +L   A  +YQ+LY+ E
Sbjct: 322 DRNTKYFHTSTIIRRRRNQIEMLKDDEGKWVEEPEELAKMAVEYYQKLYSVE 373



 Score = 30.4 bits (67), Expect(2) = 9e-08
 Identities = 10/28 (35%), Positives = 20/28 (71%)
 Frame = +1

Query: 85  LITEYKEIIHHEEMYWRQRTKEQWLRDG 168
           LI E++ ++  EE+ W Q+++E+W+  G
Sbjct: 294 LIKEFEVVLEQEEIVWFQKSREKWIALG 321


>gb|AAD37019.2| putative non-LTR retrolelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 855

 Score = 44.3 bits (103), Expect(2) = 1e-06
 Identities = 20/76 (26%), Positives = 40/76 (52%)
 Frame = +3

Query: 168 ERCTEFFHTSVISKQAKRQIIKLNDEQGEWIKDQNQLKDKARTFYQRLYNAEQ*GRLIWH 347
           +R T++FHT  + ++ + +I  L  + G W+  Q +L+  A  +Y RLY+ E    ++  
Sbjct: 766 DRNTKYFHTMTVVRRRRNRIEMLKADDGSWVSQQQELEKMAVDYYSRLYSMEDVDEVVER 825

Query: 348 IGVCPKLLQLIEGLCT 395
           +   P   ++ +G  T
Sbjct: 826 LPTNPPNPRIRKGNLT 841



 Score = 33.5 bits (75), Expect(2) = 1e-06
 Identities = 12/33 (36%), Positives = 23/33 (69%)
 Frame = +1

Query: 70  AKGKELITEYKEIIHHEEMYWRQRTKEQWLRDG 168
           +K +ELI E+  ++  EE+ W Q+++E+W+  G
Sbjct: 733 SKEEELIKEFDVVLEQEEVLWFQKSREKWVELG 765