BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Catharanthus22_contig00010258
         (1737 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002263416.1| PREDICTED: tRNA pseudouridine synthase A [Vi...   312   3e-82
ref|XP_004230453.1| PREDICTED: tRNA pseudouridine synthase A-lik...   311   7e-82
ref|XP_006349329.1| PREDICTED: tRNA pseudouridine synthase-like ...   310   1e-81
gb|EOX97062.1| Pseudouridine synthase family protein isoform 4 [...   298   5e-78
gb|EOX97060.1| Pseudouridine synthase family protein isoform 2 [...   298   5e-78
gb|EOX97059.1| Pseudouridine synthase family protein isoform 1 [...   298   5e-78
ref|XP_006417534.1| hypothetical protein EUTSA_v10007981mg [Eutr...   296   2e-77
gb|EOX97061.1| Pseudouridine synthase family protein isoform 3 [...   291   5e-76
ref|XP_004309887.1| PREDICTED: tRNA pseudouridine synthase A-lik...   290   1e-75
ref|NP_172451.2| pseudouridine synthase family protein [Arabidop...   287   9e-75
ref|XP_002526453.1| pseudouridylate synthase, putative [Ricinus ...   287   9e-75
gb|AAT06466.1| At1g09800 [Arabidopsis thaliana]                       287   9e-75
ref|XP_002892526.1| hypothetical protein ARALYDRAFT_471082 [Arab...   287   1e-74
ref|XP_006305124.1| hypothetical protein CARUB_v10009493mg [Caps...   285   3e-74
dbj|BAD44444.1| unnamed protein product [Arabidopsis thaliana] g...   285   3e-74
ref|XP_006471140.1| PREDICTED: tRNA pseudouridine synthase-like ...   283   2e-73
ref|XP_006389535.1| hypothetical protein POPTR_0022s00690g [Popu...   282   3e-73
ref|XP_004485454.1| PREDICTED: tRNA pseudouridine synthase A-lik...   279   2e-72
ref|XP_004485453.1| PREDICTED: tRNA pseudouridine synthase A-lik...   279   2e-72
ref|XP_006598748.1| PREDICTED: uncharacterized protein LOC100799...   277   9e-72

>ref|XP_002263416.1| PREDICTED: tRNA pseudouridine synthase A [Vitis vinifera]
            gi|297739525|emb|CBI29707.3| unnamed protein product
            [Vitis vinifera]
          Length = 380

 Score =  312 bits (800), Expect = 3e-82
 Identities = 156/216 (72%), Positives = 178/216 (82%)
 Frame = +1

Query: 1090 ADTSKQSLDKPPQDNSSERPKKIARVXXXXXXXXXXXXXXXQNQQKESVFSEMKMNTNPR 1269
            +D+ K  L++  +  S +RP KIAR                  +Q++SV S+  M  NPR
Sbjct: 15   SDSPKHLLNR--RSESPQRPSKIARTDDLS-----------DGEQQDSVASKT-MTQNPR 60

Query: 1270 IQRYLIAIEYIGTRFSGAQQQSNARTVVGVLQDAFHKFIGQPVSIFCSSRTDAGVHALSN 1449
            +QRYL+A+EYIGTRFSG+QQQ N RTV G LQ+AFHKFIGQPVSIFCSSRTDAGVHALSN
Sbjct: 61   VQRYLVAVEYIGTRFSGSQQQLNCRTVAGALQEAFHKFIGQPVSIFCSSRTDAGVHALSN 120

Query: 1450 VCHVDVERISKRKPGELLPPHEPAVVKRAVNHFLQKNEGDIMVIDVRCVPSDFHSRYKAR 1629
            VCHVDVERISKRKPGE+LPPHEPAVV+RAVNHFLQKNEGD+MVIDVRCVP DFH+RYKAR
Sbjct: 121  VCHVDVERISKRKPGEVLPPHEPAVVRRAVNHFLQKNEGDVMVIDVRCVPPDFHARYKAR 180

Query: 1630 ERTYFYRLLSGPEPLSTFDKDRAWHVSEELDLLAMQ 1737
            ERTYFYRLLSGPEPLS+F+KDRAWHV E+LDLLAMQ
Sbjct: 181  ERTYFYRLLSGPEPLSSFEKDRAWHVPEDLDLLAMQ 216



 Score =  208 bits (530), Expect = 5e-51
 Identities = 110/169 (65%), Positives = 132/169 (78%)
 Frame = +1

Query: 1   MQKACKVLVGRHDFSSFRAAACQAKSPIRTLDELNVTEVVSSLYFPSVVERERSNFVAEC 180
           MQKAC+VLVG HDFSSFRAA CQAKSPIRTLDEL V+EV+ + YFPS+ ER ++NF  E 
Sbjct: 215 MQKACRVLVGCHDFSSFRAAGCQAKSPIRTLDELCVSEVLPTPYFPSITERAQNNFTEEN 274

Query: 181 SSLGVVNSETKLSHVSAIADQVNDKDSWGEPSPVFGMRKQHRCFVVTARARSFLYHQVRL 360
                 N+E   S  +A  D+++  +  G+    FG+R++HRCF+VTARARSFLYHQVRL
Sbjct: 275 PLACSNNAEVPDSPSTANHDRLDGFNGAGQG---FGVRRRHRCFLVTARARSFLYHQVRL 331

Query: 361 LVGVLKSVGTGELKVPDVEGILKAKTVSAASPMAPACGLYLGHVKYDLP 507
           LVGV+K VGTG+L V DVE IL AKTV+AASPMAPACGLYLG+V YDLP
Sbjct: 332 LVGVIKCVGTGDLTVSDVERILNAKTVTAASPMAPACGLYLGNVNYDLP 380


>ref|XP_004230453.1| PREDICTED: tRNA pseudouridine synthase A-like [Solanum lycopersicum]
          Length = 389

 Score =  311 bits (796), Expect = 7e-82
 Identities = 156/216 (72%), Positives = 178/216 (82%)
 Frame = +1

Query: 1090 ADTSKQSLDKPPQDNSSERPKKIARVXXXXXXXXXXXXXXXQNQQKESVFSEMKMNTNPR 1269
            ++T+K SLD+ P+  S +RP K+ +V                 +QKESV     MN NPR
Sbjct: 11   SETNKHSLDQRPE--SPQRPSKLPKVNDDGGNDVVEG-----EEQKESV--TRTMNPNPR 61

Query: 1270 IQRYLIAIEYIGTRFSGAQQQSNARTVVGVLQDAFHKFIGQPVSIFCSSRTDAGVHALSN 1449
            +QRYL+AIEYIGTRF+GAQQQ N RTVVGVLQ+AF KFIGQPVS+FCSSRTDAGVHALSN
Sbjct: 62   LQRYLLAIEYIGTRFAGAQQQPNCRTVVGVLQEAFQKFIGQPVSVFCSSRTDAGVHALSN 121

Query: 1450 VCHVDVERISKRKPGELLPPHEPAVVKRAVNHFLQKNEGDIMVIDVRCVPSDFHSRYKAR 1629
            VCHVDVERISKRKPG++LPPHEP VVKRAVNHFLQKN GDIMVIDVRCVP DFH+RYKA+
Sbjct: 122  VCHVDVERISKRKPGDVLPPHEPLVVKRAVNHFLQKNAGDIMVIDVRCVPDDFHARYKAQ 181

Query: 1630 ERTYFYRLLSGPEPLSTFDKDRAWHVSEELDLLAMQ 1737
            ERTYFYRLLSGPEP+S+F++DRAWHV E LDLLAMQ
Sbjct: 182  ERTYFYRLLSGPEPVSSFERDRAWHVPENLDLLAMQ 217



 Score =  218 bits (556), Expect = 5e-54
 Identities = 112/169 (66%), Positives = 136/169 (80%)
 Frame = +1

Query: 1   MQKACKVLVGRHDFSSFRAAACQAKSPIRTLDELNVTEVVSSLYFPSVVERERSNFVAEC 180
           MQKAC +L+GRHDFSSFRAAACQA SPIRTLDELNV EVVS+ +FPS+ ER +S+ V E 
Sbjct: 216 MQKACNILIGRHDFSSFRAAACQANSPIRTLDELNVIEVVSTPFFPSISERLKSSSVMED 275

Query: 181 SSLGVVNSETKLSHVSAIADQVNDKDSWGEPSPVFGMRKQHRCFVVTARARSFLYHQVRL 360
            ++  + S+T  S +S   ++   + S GE    FG+R++HRCFVVTARARSFLYHQVRL
Sbjct: 276 PTV-YLGSDTNHSQISFNTNEGKLEGSNGEACQEFGLRRRHRCFVVTARARSFLYHQVRL 334

Query: 361 LVGVLKSVGTGELKVPDVEGILKAKTVSAASPMAPACGLYLGHVKYDLP 507
           LVGVLKSVG G+L  PDV+ IL+AK+++AA PMAPACGLYLGHVKYDLP
Sbjct: 335 LVGVLKSVGAGDLTDPDVKRILEAKSIAAAPPMAPACGLYLGHVKYDLP 383


>ref|XP_006349329.1| PREDICTED: tRNA pseudouridine synthase-like 1-like [Solanum
            tuberosum]
          Length = 389

 Score =  310 bits (795), Expect = 1e-81
 Identities = 158/226 (69%), Positives = 182/226 (80%)
 Frame = +1

Query: 1060 MTSGHSLHSDADTSKQSLDKPPQDNSSERPKKIARVXXXXXXXXXXXXXXXQNQQKESVF 1239
            M++  S    ++T+K SLD+ P+  S +RP K  +V                 +QKESV 
Sbjct: 1    MSNDQSQPLISETNKHSLDQRPE--SPQRPSKFPKVNDDAGNDVLEG-----EEQKESV- 52

Query: 1240 SEMKMNTNPRIQRYLIAIEYIGTRFSGAQQQSNARTVVGVLQDAFHKFIGQPVSIFCSSR 1419
                MN NPR+QRYLIAIEYIGTRF+GAQQQ N RTVVGVLQ+AF KF+GQPVS+FCSSR
Sbjct: 53   -TRTMNPNPRLQRYLIAIEYIGTRFAGAQQQPNCRTVVGVLQEAFQKFVGQPVSVFCSSR 111

Query: 1420 TDAGVHALSNVCHVDVERISKRKPGELLPPHEPAVVKRAVNHFLQKNEGDIMVIDVRCVP 1599
            TDAGVHALSNVCHVDVERISKRKPG++LPPHEP VVKRAVNHFLQKNEGDIMVIDVRCVP
Sbjct: 112  TDAGVHALSNVCHVDVERISKRKPGDVLPPHEPLVVKRAVNHFLQKNEGDIMVIDVRCVP 171

Query: 1600 SDFHSRYKARERTYFYRLLSGPEPLSTFDKDRAWHVSEELDLLAMQ 1737
            +DFH+RYKA+ERTYFYRLLSGPE +S+F++DRAWHV E LDLLAMQ
Sbjct: 172  ADFHARYKAQERTYFYRLLSGPESVSSFERDRAWHVPENLDLLAMQ 217



 Score =  220 bits (560), Expect = 2e-54
 Identities = 113/172 (65%), Positives = 137/172 (79%)
 Frame = +1

Query: 1   MQKACKVLVGRHDFSSFRAAACQAKSPIRTLDELNVTEVVSSLYFPSVVERERSNFVAEC 180
           MQKAC +L+GRHDFSSFRAAACQA SPIRTLDELNV EVVS+ +FPS+ ER +S+ V E 
Sbjct: 216 MQKACNILIGRHDFSSFRAAACQANSPIRTLDELNVIEVVSTPFFPSISERLKSSSVMED 275

Query: 181 SSLGVVNSETKLSHVSAIADQVNDKDSWGEPSPVFGMRKQHRCFVVTARARSFLYHQVRL 360
            ++ +  S+T  S +S   ++   + S GE    FG+R++HRCFVVTARARSFLYHQVRL
Sbjct: 276 PTVSL-GSDTNHSQISLNTNEEKLEGSNGEACQEFGLRRRHRCFVVTARARSFLYHQVRL 334

Query: 361 LVGVLKSVGTGELKVPDVEGILKAKTVSAASPMAPACGLYLGHVKYDLPSKT 516
           LVGVLKSVG G L  PDV+ IL+AK+++AA PMAPACGLYLGHVKYDLP +T
Sbjct: 335 LVGVLKSVGAGVLTDPDVKRILEAKSITAAPPMAPACGLYLGHVKYDLPPET 386


>gb|EOX97062.1| Pseudouridine synthase family protein isoform 4 [Theobroma cacao]
          Length = 341

 Score =  298 bits (763), Expect = 5e-78
 Identities = 149/216 (68%), Positives = 173/216 (80%)
 Frame = +1

Query: 1090 ADTSKQSLDKPPQDNSSERPKKIARVXXXXXXXXXXXXXXXQNQQKESVFSEMKMNTNPR 1269
            ++  K SL   P+   S RP KI +                + ++++    E  M+ NPR
Sbjct: 2    SENPKHSLSTTPE---SSRPSKIPKTQDHSDQ---------EEEEEDKQQQESSMSKNPR 49

Query: 1270 IQRYLIAIEYIGTRFSGAQQQSNARTVVGVLQDAFHKFIGQPVSIFCSSRTDAGVHALSN 1449
            IQRYL+AIEYIGTRFSG+QQQ N RTVVGVL++AF KFIGQPVSIFCSSRTDAGVHALSN
Sbjct: 50   IQRYLVAIEYIGTRFSGSQQQPNCRTVVGVLEEAFLKFIGQPVSIFCSSRTDAGVHALSN 109

Query: 1450 VCHVDVERISKRKPGELLPPHEPAVVKRAVNHFLQKNEGDIMVIDVRCVPSDFHSRYKAR 1629
            VCHVDVERISKRKPGE+LPPHEP+VV+RAVNHFLQK+EGDI VIDVRCVP+DFH+RYKA+
Sbjct: 110  VCHVDVERISKRKPGEVLPPHEPSVVRRAVNHFLQKSEGDITVIDVRCVPNDFHARYKAQ 169

Query: 1630 ERTYFYRLLSGPEPLSTFDKDRAWHVSEELDLLAMQ 1737
            ERTYFYRLLSG EPLSTF+K+RAWHV E+LDL AMQ
Sbjct: 170  ERTYFYRLLSGSEPLSTFEKERAWHVPEKLDLYAMQ 205



 Score =  145 bits (366), Expect = 5e-32
 Identities = 88/170 (51%), Positives = 105/170 (61%), Gaps = 1/170 (0%)
 Frame = +1

Query: 1   MQKACKVLVGRHDFSSFRAAACQAKSPIRTLDELNVTEVVSSLYFPSVVERERSNFVAEC 180
           MQ+ACKVLVG HDFSSFRAA CQAKSPIRTLDEL+V+E   + YFPS+ E++++      
Sbjct: 204 MQEACKVLVGHHDFSSFRAAGCQAKSPIRTLDELHVSEAPPTPYFPSISEKKQN------ 257

Query: 181 SSLGVVNSETKLSHVSAIADQVN-DKDSWGEPSPVFGMRKQHRCFVVTARARSFLYHQVR 357
                 NS T+ SH  +   +++   DS+                            +VR
Sbjct: 258 ------NSSTEDSHACSREPEIDLPIDSFSNSD-----------------------DEVR 288

Query: 358 LLVGVLKSVGTGELKVPDVEGILKAKTVSAASPMAPACGLYLGHVKYDLP 507
           LLVGVLK VGTGEL   DVE IL AKTV+AASPMAPA GLYLG VKYDLP
Sbjct: 289 LLVGVLKCVGTGELTTSDVERILNAKTVTAASPMAPAYGLYLGCVKYDLP 338


>gb|EOX97060.1| Pseudouridine synthase family protein isoform 2 [Theobroma cacao]
          Length = 345

 Score =  298 bits (763), Expect = 5e-78
 Identities = 149/216 (68%), Positives = 173/216 (80%)
 Frame = +1

Query: 1090 ADTSKQSLDKPPQDNSSERPKKIARVXXXXXXXXXXXXXXXQNQQKESVFSEMKMNTNPR 1269
            ++  K SL   P+   S RP KI +                + ++++    E  M+ NPR
Sbjct: 2    SENPKHSLSTTPE---SSRPSKIPKTQDHSDQ---------EEEEEDKQQQESSMSKNPR 49

Query: 1270 IQRYLIAIEYIGTRFSGAQQQSNARTVVGVLQDAFHKFIGQPVSIFCSSRTDAGVHALSN 1449
            IQRYL+AIEYIGTRFSG+QQQ N RTVVGVL++AF KFIGQPVSIFCSSRTDAGVHALSN
Sbjct: 50   IQRYLVAIEYIGTRFSGSQQQPNCRTVVGVLEEAFLKFIGQPVSIFCSSRTDAGVHALSN 109

Query: 1450 VCHVDVERISKRKPGELLPPHEPAVVKRAVNHFLQKNEGDIMVIDVRCVPSDFHSRYKAR 1629
            VCHVDVERISKRKPGE+LPPHEP+VV+RAVNHFLQK+EGDI VIDVRCVP+DFH+RYKA+
Sbjct: 110  VCHVDVERISKRKPGEVLPPHEPSVVRRAVNHFLQKSEGDITVIDVRCVPNDFHARYKAQ 169

Query: 1630 ERTYFYRLLSGPEPLSTFDKDRAWHVSEELDLLAMQ 1737
            ERTYFYRLLSG EPLSTF+K+RAWHV E+LDL AMQ
Sbjct: 170  ERTYFYRLLSGSEPLSTFEKERAWHVPEKLDLYAMQ 205



 Score =  147 bits (371), Expect = 1e-32
 Identities = 79/137 (57%), Positives = 98/137 (71%)
 Frame = +1

Query: 1   MQKACKVLVGRHDFSSFRAAACQAKSPIRTLDELNVTEVVSSLYFPSVVERERSNFVAEC 180
           MQ+ACKVLVG HDFSSFRAA CQAKSPIRTLDEL+V+E   + YFPS+ E++++N   E 
Sbjct: 204 MQEACKVLVGHHDFSSFRAAGCQAKSPIRTLDELHVSEAPPTPYFPSISEKKQNNSSTED 263

Query: 181 SSLGVVNSETKLSHVSAIADQVNDKDSWGEPSPVFGMRKQHRCFVVTARARSFLYHQVRL 360
           S       E  L  + + ++  ++  S G     FG+R++H C+VVTARARSFLYHQVRL
Sbjct: 264 SHACSREPEIDLP-IDSFSNSDDEVGSNGITDLGFGIRRRHHCYVVTARARSFLYHQVRL 322

Query: 361 LVGVLKSVGTGELKVPD 411
           LVGVLK VGTGEL   D
Sbjct: 323 LVGVLKCVGTGELTTSD 339


>gb|EOX97059.1| Pseudouridine synthase family protein isoform 1 [Theobroma cacao]
          Length = 374

 Score =  298 bits (763), Expect = 5e-78
 Identities = 149/216 (68%), Positives = 173/216 (80%)
 Frame = +1

Query: 1090 ADTSKQSLDKPPQDNSSERPKKIARVXXXXXXXXXXXXXXXQNQQKESVFSEMKMNTNPR 1269
            ++  K SL   P+   S RP KI +                + ++++    E  M+ NPR
Sbjct: 2    SENPKHSLSTTPE---SSRPSKIPKTQDHSDQ---------EEEEEDKQQQESSMSKNPR 49

Query: 1270 IQRYLIAIEYIGTRFSGAQQQSNARTVVGVLQDAFHKFIGQPVSIFCSSRTDAGVHALSN 1449
            IQRYL+AIEYIGTRFSG+QQQ N RTVVGVL++AF KFIGQPVSIFCSSRTDAGVHALSN
Sbjct: 50   IQRYLVAIEYIGTRFSGSQQQPNCRTVVGVLEEAFLKFIGQPVSIFCSSRTDAGVHALSN 109

Query: 1450 VCHVDVERISKRKPGELLPPHEPAVVKRAVNHFLQKNEGDIMVIDVRCVPSDFHSRYKAR 1629
            VCHVDVERISKRKPGE+LPPHEP+VV+RAVNHFLQK+EGDI VIDVRCVP+DFH+RYKA+
Sbjct: 110  VCHVDVERISKRKPGEVLPPHEPSVVRRAVNHFLQKSEGDITVIDVRCVPNDFHARYKAQ 169

Query: 1630 ERTYFYRLLSGPEPLSTFDKDRAWHVSEELDLLAMQ 1737
            ERTYFYRLLSG EPLSTF+K+RAWHV E+LDL AMQ
Sbjct: 170  ERTYFYRLLSGSEPLSTFEKERAWHVPEKLDLYAMQ 205



 Score =  196 bits (499), Expect = 2e-47
 Identities = 106/169 (62%), Positives = 126/169 (74%)
 Frame = +1

Query: 1   MQKACKVLVGRHDFSSFRAAACQAKSPIRTLDELNVTEVVSSLYFPSVVERERSNFVAEC 180
           MQ+ACKVLVG HDFSSFRAA CQAKSPIRTLDEL+V+E   + YFPS+ E++++N   E 
Sbjct: 204 MQEACKVLVGHHDFSSFRAAGCQAKSPIRTLDELHVSEAPPTPYFPSISEKKQNNSSTED 263

Query: 181 SSLGVVNSETKLSHVSAIADQVNDKDSWGEPSPVFGMRKQHRCFVVTARARSFLYHQVRL 360
           S       E  L  + + ++  ++  S G     FG+R++H C+VVTARARSFLYHQVRL
Sbjct: 264 SHACSREPEIDLP-IDSFSNSDDEVGSNGITDLGFGIRRRHHCYVVTARARSFLYHQVRL 322

Query: 361 LVGVLKSVGTGELKVPDVEGILKAKTVSAASPMAPACGLYLGHVKYDLP 507
           LVGVLK VGTGEL   DVE IL AKTV+AASPMAPA GLYLG VKYDLP
Sbjct: 323 LVGVLKCVGTGELTTSDVERILNAKTVTAASPMAPAYGLYLGCVKYDLP 371


>ref|XP_006417534.1| hypothetical protein EUTSA_v10007981mg [Eutrema salsugineum]
            gi|557095305|gb|ESQ35887.1| hypothetical protein
            EUTSA_v10007981mg [Eutrema salsugineum]
          Length = 368

 Score =  296 bits (758), Expect = 2e-77
 Identities = 147/212 (69%), Positives = 167/212 (78%)
 Frame = +1

Query: 1102 KQSLDKPPQDNSSERPKKIARVXXXXXXXXXXXXXXXQNQQKESVFSEMKMNTNPRIQRY 1281
            K  LD      S ER  K+AR                Q      V SE +++ NPR+QRY
Sbjct: 6    KHPLDSSASQESLERLSKVARFDGFSDEEEGEEAEERQGL----VVSEPELSMNPRVQRY 61

Query: 1282 LIAIEYIGTRFSGAQQQSNARTVVGVLQDAFHKFIGQPVSIFCSSRTDAGVHALSNVCHV 1461
            L+AIEYIGTRFSG+QQQ+  RTVVGVLQ+AFHKFIGQPV IFCSSRTDAGVHALSNVCHV
Sbjct: 62   LVAIEYIGTRFSGSQQQATDRTVVGVLQEAFHKFIGQPVKIFCSSRTDAGVHALSNVCHV 121

Query: 1462 DVERISKRKPGELLPPHEPAVVKRAVNHFLQKNEGDIMVIDVRCVPSDFHSRYKARERTY 1641
            DVERISKRKPGE+LPPHEP VV+RAVNHFLQ+N+GD+MVIDVRCVPS++H+RYKARERTY
Sbjct: 122  DVERISKRKPGEVLPPHEPGVVQRAVNHFLQRNDGDVMVIDVRCVPSNYHARYKARERTY 181

Query: 1642 FYRLLSGPEPLSTFDKDRAWHVSEELDLLAMQ 1737
            FYRLLSG +PLS  +KDRAWHV EELDL +MQ
Sbjct: 182  FYRLLSGSDPLSILEKDRAWHVPEELDLRSMQ 213



 Score =  191 bits (486), Expect = 6e-46
 Identities = 105/173 (60%), Positives = 122/173 (70%), Gaps = 4/173 (2%)
 Frame = +1

Query: 1   MQKACKVLVGRHDFSSFRAAACQAKSPIRTLDELNVTEVVSSLYFPSVVERERSNF---- 168
           MQ+AC+VLVG HDFSSFRAA CQAKSPIR+LDELNVTEV S+ YFPS+ ER  S      
Sbjct: 212 MQEACRVLVGTHDFSSFRAAGCQAKSPIRSLDELNVTEVPSTPYFPSITERTPSYLNNGD 271

Query: 169 VAECSSLGVVNSETKLSHVSAIADQVNDKDSWGEPSPVFGMRKQHRCFVVTARARSFLYH 348
              CSS     ++T+ + VS             +    FG+R++HRC+VVTAR R+FLYH
Sbjct: 272 PLACSS----QAKTETAGVST------------DGGDTFGVRRRHRCYVVTARGRAFLYH 315

Query: 349 QVRLLVGVLKSVGTGELKVPDVEGILKAKTVSAASPMAPACGLYLGHVKYDLP 507
           QVRLLV  LK VGTGEL V DVE ILKAKTV+AA PMAPACGLYL  VKY+ P
Sbjct: 316 QVRLLVAALKCVGTGELTVSDVERILKAKTVTAAKPMAPACGLYLARVKYEFP 368


>gb|EOX97061.1| Pseudouridine synthase family protein isoform 3 [Theobroma cacao]
          Length = 373

 Score =  291 bits (746), Expect = 5e-76
 Identities = 148/216 (68%), Positives = 172/216 (79%)
 Frame = +1

Query: 1090 ADTSKQSLDKPPQDNSSERPKKIARVXXXXXXXXXXXXXXXQNQQKESVFSEMKMNTNPR 1269
            ++  K SL   P+   S RP KI +                + ++++    E  M+ NPR
Sbjct: 2    SENPKHSLSTTPE---SSRPSKIPKTQDHSDQ---------EEEEEDKQQQESSMSKNPR 49

Query: 1270 IQRYLIAIEYIGTRFSGAQQQSNARTVVGVLQDAFHKFIGQPVSIFCSSRTDAGVHALSN 1449
            IQRYL+AIEYIGTRFSG+QQQ N RTVVGVL++AF KFIGQPVSIFCSSRTDAGVHALSN
Sbjct: 50   IQRYLVAIEYIGTRFSGSQQQPNCRTVVGVLEEAFLKFIGQPVSIFCSSRTDAGVHALSN 109

Query: 1450 VCHVDVERISKRKPGELLPPHEPAVVKRAVNHFLQKNEGDIMVIDVRCVPSDFHSRYKAR 1629
            VCHVDVERISKRKPGE+LPPHEP+VV+RAVNHFLQ +EGDI VIDVRCVP+DFH+RYKA+
Sbjct: 110  VCHVDVERISKRKPGEVLPPHEPSVVRRAVNHFLQ-SEGDITVIDVRCVPNDFHARYKAQ 168

Query: 1630 ERTYFYRLLSGPEPLSTFDKDRAWHVSEELDLLAMQ 1737
            ERTYFYRLLSG EPLSTF+K+RAWHV E+LDL AMQ
Sbjct: 169  ERTYFYRLLSGSEPLSTFEKERAWHVPEKLDLYAMQ 204



 Score =  196 bits (499), Expect = 2e-47
 Identities = 106/169 (62%), Positives = 126/169 (74%)
 Frame = +1

Query: 1   MQKACKVLVGRHDFSSFRAAACQAKSPIRTLDELNVTEVVSSLYFPSVVERERSNFVAEC 180
           MQ+ACKVLVG HDFSSFRAA CQAKSPIRTLDEL+V+E   + YFPS+ E++++N   E 
Sbjct: 203 MQEACKVLVGHHDFSSFRAAGCQAKSPIRTLDELHVSEAPPTPYFPSISEKKQNNSSTED 262

Query: 181 SSLGVVNSETKLSHVSAIADQVNDKDSWGEPSPVFGMRKQHRCFVVTARARSFLYHQVRL 360
           S       E  L  + + ++  ++  S G     FG+R++H C+VVTARARSFLYHQVRL
Sbjct: 263 SHACSREPEIDLP-IDSFSNSDDEVGSNGITDLGFGIRRRHHCYVVTARARSFLYHQVRL 321

Query: 361 LVGVLKSVGTGELKVPDVEGILKAKTVSAASPMAPACGLYLGHVKYDLP 507
           LVGVLK VGTGEL   DVE IL AKTV+AASPMAPA GLYLG VKYDLP
Sbjct: 322 LVGVLKCVGTGELTTSDVERILNAKTVTAASPMAPAYGLYLGCVKYDLP 370


>ref|XP_004309887.1| PREDICTED: tRNA pseudouridine synthase A-like [Fragaria vesca subsp.
            vesca]
          Length = 350

 Score =  290 bits (742), Expect = 1e-75
 Identities = 148/216 (68%), Positives = 172/216 (79%)
 Frame = +1

Query: 1090 ADTSKQSLDKPPQDNSSERPKKIARVXXXXXXXXXXXXXXXQNQQKESVFSEMKMNTNPR 1269
            ++  K SL+   Q  S +RP KI++                +  + ES      M+    
Sbjct: 2    SENLKHSLESRSQ--SPKRPSKISKTTS-------------EEAEAES------MSKPQG 40

Query: 1270 IQRYLIAIEYIGTRFSGAQQQSNARTVVGVLQDAFHKFIGQPVSIFCSSRTDAGVHALSN 1449
            IQRYLIAIEYIGTRFSG+QQQSN RTVVGVL++AF KFIGQPVSIFCSSRTDAGVHALSN
Sbjct: 41   IQRYLIAIEYIGTRFSGSQQQSNCRTVVGVLEEAFRKFIGQPVSIFCSSRTDAGVHALSN 100

Query: 1450 VCHVDVERISKRKPGELLPPHEPAVVKRAVNHFLQKNEGDIMVIDVRCVPSDFHSRYKAR 1629
            VCHVD+ERISKRKPGE+LPPHEP VV+RAVNHFLQKNEGD+MV+DVR VP+DFH+R+KA+
Sbjct: 101  VCHVDIERISKRKPGEVLPPHEPIVVQRAVNHFLQKNEGDVMVVDVRSVPADFHARFKAQ 160

Query: 1630 ERTYFYRLLSGPEPLSTFDKDRAWHVSEELDLLAMQ 1737
            ERTYFYRLLSGPEPLSTF+KDRAWH+ EELD+LAMQ
Sbjct: 161  ERTYFYRLLSGPEPLSTFEKDRAWHIPEELDVLAMQ 196



 Score =  207 bits (527), Expect = 1e-50
 Identities = 112/169 (66%), Positives = 127/169 (75%)
 Frame = +1

Query: 1   MQKACKVLVGRHDFSSFRAAACQAKSPIRTLDELNVTEVVSSLYFPSVVERERSNFVAEC 180
           MQ+ACK+LVG HDFSSFRAA CQAKSPIRTLDELNV+EVVSS  FP++ ER R N V + 
Sbjct: 195 MQEACKILVGHHDFSSFRAAGCQAKSPIRTLDELNVSEVVSSPNFPTIAERTR-NLVQK- 252

Query: 181 SSLGVVNSETKLSHVSAIADQVNDKDSWGEPSPVFGMRKQHRCFVVTARARSFLYHQVRL 360
             +   N+     H S            G     FG+RK+HRC VVTARAR+FLYHQVRL
Sbjct: 253 -DIQCTNNPEADCHSSFN----------GGTDQGFGLRKKHRCIVVTARARAFLYHQVRL 301

Query: 361 LVGVLKSVGTGELKVPDVEGILKAKTVSAASPMAPACGLYLGHVKYDLP 507
           LVGVLK VGTG+LK+PDVE IL AKTV+AASPMAPACGLYLGHV+YDLP
Sbjct: 302 LVGVLKCVGTGDLKIPDVERILNAKTVTAASPMAPACGLYLGHVRYDLP 350


>ref|NP_172451.2| pseudouridine synthase family protein [Arabidopsis thaliana]
            gi|332190374|gb|AEE28495.1| pseudouridine synthase family
            protein [Arabidopsis thaliana]
          Length = 372

 Score =  287 bits (735), Expect = 9e-75
 Identities = 142/217 (65%), Positives = 170/217 (78%), Gaps = 1/217 (0%)
 Frame = +1

Query: 1090 ADTSKQSLDKPPQDNSSERPKKIARVXXXXXXXXXXXXXXXQNQQKESVFSEMKMN-TNP 1266
            +D  K  LD    + S ER  K+AR+               ++++++ +     MN  NP
Sbjct: 2    SDNLKHPLDCTASEESLERLSKVARIEGFSDE---------ESEEQQGLADLESMNPVNP 52

Query: 1267 RIQRYLIAIEYIGTRFSGAQQQSNARTVVGVLQDAFHKFIGQPVSIFCSSRTDAGVHALS 1446
            R+QRYL+AIEYIGTRFSG+QQQ+  RTVVGVLQ+AFHKFIGQPV IFCSSRTDAGVHALS
Sbjct: 53   RVQRYLVAIEYIGTRFSGSQQQAKDRTVVGVLQEAFHKFIGQPVKIFCSSRTDAGVHALS 112

Query: 1447 NVCHVDVERISKRKPGELLPPHEPAVVKRAVNHFLQKNEGDIMVIDVRCVPSDFHSRYKA 1626
            NVCHVDVERISKRKPGE+LPPHEP VV+RAVNHFLQ+ +GD+MVIDVRCVPS++H+RYKA
Sbjct: 113  NVCHVDVERISKRKPGEVLPPHEPGVVQRAVNHFLQRKDGDVMVIDVRCVPSNYHARYKA 172

Query: 1627 RERTYFYRLLSGPEPLSTFDKDRAWHVSEELDLLAMQ 1737
            +ERTYFYRLLSG +PLS  +KDR WHV EEL+L  MQ
Sbjct: 173  QERTYFYRLLSGSDPLSILEKDRCWHVPEELNLRFMQ 209



 Score =  189 bits (479), Expect = 4e-45
 Identities = 100/169 (59%), Positives = 121/169 (71%)
 Frame = +1

Query: 1   MQKACKVLVGRHDFSSFRAAACQAKSPIRTLDELNVTEVVSSLYFPSVVERERSNFVAEC 180
           MQ+AC+VLVG HDFSSFRAA CQAKSP+R+LDELN+TEV S+ YFPS+ ER  SN     
Sbjct: 208 MQEACRVLVGSHDFSSFRAAGCQAKSPMRSLDELNITEVPSTPYFPSITERTLSNLN--- 264

Query: 181 SSLGVVNSETKLSHVSAIADQVNDKDSWGEPSPVFGMRKQHRCFVVTARARSFLYHQVRL 360
           +   +  S    S  + +   V + +   E    FG R++HRC+VVTAR+R FLYHQVRL
Sbjct: 265 NGDPLACSNQPKSETAGVTTNVGEVEGSTEGDS-FGRRRRHRCYVVTARSRGFLYHQVRL 323

Query: 361 LVGVLKSVGTGELKVPDVEGILKAKTVSAASPMAPACGLYLGHVKYDLP 507
           +VG LK VGTGEL V DVE IL+AKTVSAA PMAPA GLYL  V+Y+ P
Sbjct: 324 IVGALKCVGTGELTVSDVERILEAKTVSAAKPMAPASGLYLARVRYEFP 372


>ref|XP_002526453.1| pseudouridylate synthase, putative [Ricinus communis]
            gi|223534233|gb|EEF35948.1| pseudouridylate synthase,
            putative [Ricinus communis]
          Length = 372

 Score =  287 bits (735), Expect = 9e-75
 Identities = 143/215 (66%), Positives = 170/215 (79%)
 Frame = +1

Query: 1093 DTSKQSLDKPPQDNSSERPKKIARVXXXXXXXXXXXXXXXQNQQKESVFSEMKMNTNPRI 1272
            +  K SLD      S  RP KI +                + + +ES F    M++NP++
Sbjct: 3    ENPKHSLDT----ESRNRPSKILKTQDFVDDNEEG-----EEELQESSFVAESMSSNPKL 53

Query: 1273 QRYLIAIEYIGTRFSGAQQQSNARTVVGVLQDAFHKFIGQPVSIFCSSRTDAGVHALSNV 1452
            QRYLIA+EYIGT+F+G+Q+Q N RTVVGVL++AF KFIGQ VS+  SSRTDAGVHALSNV
Sbjct: 54   QRYLIAVEYIGTKFAGSQKQLNGRTVVGVLEEAFCKFIGQQVSVSLSSRTDAGVHALSNV 113

Query: 1453 CHVDVERISKRKPGELLPPHEPAVVKRAVNHFLQKNEGDIMVIDVRCVPSDFHSRYKARE 1632
            CHVD+ERISKRKPGE+LPPHEPAVV+RAVNHFLQKNEGDIMV DVRCVPSDFH+R+KA+E
Sbjct: 114  CHVDIERISKRKPGEVLPPHEPAVVRRAVNHFLQKNEGDIMVTDVRCVPSDFHARFKAQE 173

Query: 1633 RTYFYRLLSGPEPLSTFDKDRAWHVSEELDLLAMQ 1737
            RTYFYR LSGPEPLSTF+KDRAWHV E+LD++AMQ
Sbjct: 174  RTYFYRFLSGPEPLSTFEKDRAWHVLEDLDIVAMQ 208



 Score =  203 bits (516), Expect = 2e-49
 Identities = 109/170 (64%), Positives = 130/170 (76%), Gaps = 1/170 (0%)
 Frame = +1

Query: 1   MQKACKVLVGRHDFSSFRAAACQAKSPIRTLDELNVTEVVSSLYFPSVVERERSNFVAEC 180
           MQ+ACKVLVG HDFSSFRA+ CQAKSPIRTL E++V+EV S+LYFPS+ ERE++    E 
Sbjct: 207 MQEACKVLVGHHDFSSFRASGCQAKSPIRTLAEISVSEVASTLYFPSITEREQNCENGEN 266

Query: 181 SSLGVVNSETKL-SHVSAIADQVNDKDSWGEPSPVFGMRKQHRCFVVTARARSFLYHQVR 357
           S      ++  + SH +    +     S+GE    FG+R++HRCFVVTARARSFLYHQVR
Sbjct: 267 SCCKKFKTDLPMGSHSNTNVAE----SSFGETDLGFGIRRRHRCFVVTARARSFLYHQVR 322

Query: 358 LLVGVLKSVGTGELKVPDVEGILKAKTVSAASPMAPACGLYLGHVKYDLP 507
           LLVGVLKSVG G+L   DVE IL AK+V+AASPMAPA GLYLGHVKYDLP
Sbjct: 323 LLVGVLKSVGIGDLTTSDVERILSAKSVTAASPMAPARGLYLGHVKYDLP 372


>gb|AAT06466.1| At1g09800 [Arabidopsis thaliana]
          Length = 372

 Score =  287 bits (735), Expect = 9e-75
 Identities = 142/217 (65%), Positives = 170/217 (78%), Gaps = 1/217 (0%)
 Frame = +1

Query: 1090 ADTSKQSLDKPPQDNSSERPKKIARVXXXXXXXXXXXXXXXQNQQKESVFSEMKMN-TNP 1266
            +D  K  LD    + S ER  K+AR+               ++++++ +     MN  NP
Sbjct: 2    SDNLKHPLDCTASEESLERLSKVARIEGFSDE---------ESEEQQGLADLESMNPVNP 52

Query: 1267 RIQRYLIAIEYIGTRFSGAQQQSNARTVVGVLQDAFHKFIGQPVSIFCSSRTDAGVHALS 1446
            R+QRYL+AIEYIGTRFSG+QQQ+  RTVVGVLQ+AFHKFIGQPV IFCSSRTDAGVHALS
Sbjct: 53   RVQRYLVAIEYIGTRFSGSQQQAKDRTVVGVLQEAFHKFIGQPVKIFCSSRTDAGVHALS 112

Query: 1447 NVCHVDVERISKRKPGELLPPHEPAVVKRAVNHFLQKNEGDIMVIDVRCVPSDFHSRYKA 1626
            NVCHVDVERISKRKPGE+LPPHEP VV+RAVNHFLQ+ +GD+MVIDVRCVPS++H+RYKA
Sbjct: 113  NVCHVDVERISKRKPGEVLPPHEPGVVQRAVNHFLQRKDGDVMVIDVRCVPSNYHARYKA 172

Query: 1627 RERTYFYRLLSGPEPLSTFDKDRAWHVSEELDLLAMQ 1737
            +ERTYFYRLLSG +PLS  +KDR WHV EEL+L  MQ
Sbjct: 173  QERTYFYRLLSGSDPLSILEKDRCWHVPEELNLRFMQ 209



 Score =  188 bits (478), Expect = 5e-45
 Identities = 102/170 (60%), Positives = 123/170 (72%), Gaps = 1/170 (0%)
 Frame = +1

Query: 1   MQKACKVLVGRHDFSSFRAAACQAKSPIRTLDELNVTEVVSSLYFPSVVERERSNFVAEC 180
           MQ+AC+VLVG HDFSSFRAA CQAKSP+R+LDELN+TEV S+ YFPS+ ER  SN     
Sbjct: 208 MQEACRVLVGSHDFSSFRAAGCQAKSPMRSLDELNITEVPSTPYFPSITERTLSNLN--- 264

Query: 181 SSLGVVNSETKLSHVSAIADQVNDKD-SWGEPSPVFGMRKQHRCFVVTARARSFLYHQVR 357
           +   +  S    S  + +   V + + S G  S  FG R++HRC+VVTAR+R FLYHQVR
Sbjct: 265 NGDPLACSNQPKSETAGVTTNVGEVEGSTGGDS--FGRRRRHRCYVVTARSRGFLYHQVR 322

Query: 358 LLVGVLKSVGTGELKVPDVEGILKAKTVSAASPMAPACGLYLGHVKYDLP 507
           L+VG LK VGTGEL V DVE IL+AKTVSAA PMAPA GLYL  V+Y+ P
Sbjct: 323 LIVGALKCVGTGELTVSDVERILEAKTVSAAKPMAPASGLYLARVRYEFP 372


>ref|XP_002892526.1| hypothetical protein ARALYDRAFT_471082 [Arabidopsis lyrata subsp.
            lyrata] gi|297338368|gb|EFH68785.1| hypothetical protein
            ARALYDRAFT_471082 [Arabidopsis lyrata subsp. lyrata]
          Length = 373

 Score =  287 bits (734), Expect = 1e-74
 Identities = 142/216 (65%), Positives = 166/216 (76%)
 Frame = +1

Query: 1090 ADTSKQSLDKPPQDNSSERPKKIARVXXXXXXXXXXXXXXXQNQQKESVFSEMKMNTNPR 1269
            +D  K  LD    + S ER  K+AR+                 +Q+    SE     NPR
Sbjct: 2    SDNLKHPLDSTVSEESLERLSKVARIEGFSDEEEA-------EEQQGLADSESMNPVNPR 54

Query: 1270 IQRYLIAIEYIGTRFSGAQQQSNARTVVGVLQDAFHKFIGQPVSIFCSSRTDAGVHALSN 1449
            +QRYL+AIEYIGTRFSG+QQQ+  RTVVGVLQDAFHKFIGQPV IFCSSRTDAGVHALSN
Sbjct: 55   VQRYLVAIEYIGTRFSGSQQQAKDRTVVGVLQDAFHKFIGQPVKIFCSSRTDAGVHALSN 114

Query: 1450 VCHVDVERISKRKPGELLPPHEPAVVKRAVNHFLQKNEGDIMVIDVRCVPSDFHSRYKAR 1629
            VCHVDVERISKRKPGE+LPPHEP VV+RAVNHFLQ+ +GD+MVIDVRCVPS++H+RYKA+
Sbjct: 115  VCHVDVERISKRKPGEVLPPHEPGVVQRAVNHFLQRKDGDVMVIDVRCVPSNYHARYKAQ 174

Query: 1630 ERTYFYRLLSGPEPLSTFDKDRAWHVSEELDLLAMQ 1737
            ERTYFYRLL+G +PLS  +KDR WHV EEL+  +MQ
Sbjct: 175  ERTYFYRLLAGSDPLSILEKDRCWHVPEELNPRSMQ 210



 Score =  188 bits (478), Expect = 5e-45
 Identities = 104/173 (60%), Positives = 121/173 (69%), Gaps = 4/173 (2%)
 Frame = +1

Query: 1   MQKACKVLVGRHDFSSFRAAACQAKSPIRTLDELNVTEVVSSLYFPSVVERERSNF---- 168
           MQ+AC+VLVG HDFSSFRAA CQAKSP+R LDELN+TEV S+ YFPS+ ER  SN     
Sbjct: 209 MQEACRVLVGYHDFSSFRAAGCQAKSPMRYLDELNITEVPSTPYFPSITERAWSNLNNGD 268

Query: 169 VAECSSLGVVNSETKLSHVSAIADQVNDKDSWGEPSPVFGMRKQHRCFVVTARARSFLYH 348
              CSS     +    ++V  +     D DS       FG R++HRC+VVTAR+R FLYH
Sbjct: 269 PLACSSQPKSETAGVTTNVGEVEGST-DGDS-------FGRRRRHRCYVVTARSRGFLYH 320

Query: 349 QVRLLVGVLKSVGTGELKVPDVEGILKAKTVSAASPMAPACGLYLGHVKYDLP 507
           QVRL+VG LK VGTGEL V DVE IL+AKTVSAA PMAPA GLYL  VKY+ P
Sbjct: 321 QVRLIVGALKCVGTGELTVSDVERILEAKTVSAAKPMAPASGLYLARVKYEFP 373


>ref|XP_006305124.1| hypothetical protein CARUB_v10009493mg [Capsella rubella]
            gi|482573835|gb|EOA38022.1| hypothetical protein
            CARUB_v10009493mg [Capsella rubella]
          Length = 370

 Score =  285 bits (730), Expect = 3e-74
 Identities = 140/219 (63%), Positives = 171/219 (78%), Gaps = 3/219 (1%)
 Frame = +1

Query: 1090 ADTSKQSLDKPPQDNSSERPKKIARVXXXXXXXXXXXXXXXQNQQKESVFSEMKMNTNP- 1266
            +D  K   D      S ER  K+A++                ++++  V+SE +++ NP 
Sbjct: 2    SDNLKHHRDTTASQESVERLSKVAKIEGF------------SDEEEGLVYSESELSMNPG 49

Query: 1267 --RIQRYLIAIEYIGTRFSGAQQQSNARTVVGVLQDAFHKFIGQPVSIFCSSRTDAGVHA 1440
              R+QRYL+AIEYIGTRFSG+QQQ+  RTVVGVLQ+AFHKFIGQPV IFCSSRTDAGVHA
Sbjct: 50   NPRLQRYLVAIEYIGTRFSGSQQQATDRTVVGVLQEAFHKFIGQPVKIFCSSRTDAGVHA 109

Query: 1441 LSNVCHVDVERISKRKPGELLPPHEPAVVKRAVNHFLQKNEGDIMVIDVRCVPSDFHSRY 1620
            LSNVCHVDVERISKRKPGE+LPPHEP VV++AVNHFLQ+ +GD+MVIDVRCVPS++H+RY
Sbjct: 110  LSNVCHVDVERISKRKPGEVLPPHEPGVVQKAVNHFLQRKDGDVMVIDVRCVPSNYHARY 169

Query: 1621 KARERTYFYRLLSGPEPLSTFDKDRAWHVSEELDLLAMQ 1737
            KARERTYFYR+LSG +PLS  +KDR WHV EEL+L +MQ
Sbjct: 170  KARERTYFYRILSGSDPLSILEKDRCWHVPEELNLRSMQ 208



 Score =  186 bits (472), Expect = 3e-44
 Identities = 106/175 (60%), Positives = 125/175 (71%), Gaps = 6/175 (3%)
 Frame = +1

Query: 1   MQKACKVLVGRHDFSSFRAAACQAKSPIRTLDELNVTEVVSSLYFPSVVERERSNFVAE- 177
           MQ+ACKVLVG HDFSSFRAA CQAKS +R+LDEL+VTEV S+ YFPS+ ER  +    + 
Sbjct: 207 MQEACKVLVGTHDFSSFRAAGCQAKSAMRSLDELSVTEVPSTPYFPSITERASNLNNGDP 266

Query: 178 --CSSLGVVNSETKLSHVSAIADQVN---DKDSWGEPSPVFGMRKQHRCFVVTARARSFL 342
             CSS      +T+ + V     +V    D DS       FG R++HRC+VVTAR+R FL
Sbjct: 267 FACSS----QHKTETAGVGTNVGEVEGSTDGDS-------FGARRRHRCYVVTARSRGFL 315

Query: 343 YHQVRLLVGVLKSVGTGELKVPDVEGILKAKTVSAASPMAPACGLYLGHVKYDLP 507
           YHQVRLLVGVLKSVGTGEL V DVE IL+AKTVSA+ PMAPA GLYL  VKY+ P
Sbjct: 316 YHQVRLLVGVLKSVGTGELTVADVERILEAKTVSASKPMAPASGLYLARVKYEFP 370


>dbj|BAD44444.1| unnamed protein product [Arabidopsis thaliana]
            gi|51971573|dbj|BAD44451.1| unnamed protein product
            [Arabidopsis thaliana]
          Length = 368

 Score =  285 bits (730), Expect = 3e-74
 Identities = 141/213 (66%), Positives = 168/213 (78%), Gaps = 1/213 (0%)
 Frame = +1

Query: 1102 KQSLDKPPQDNSSERPKKIARVXXXXXXXXXXXXXXXQNQQKESVFSEMKMN-TNPRIQR 1278
            K  LD    + S ER  K+AR+               ++++++ +     MN  NPR+QR
Sbjct: 2    KHPLDCTASEESLERLSKVARIEGFSDE---------ESEEQQGLADLESMNPVNPRVQR 52

Query: 1279 YLIAIEYIGTRFSGAQQQSNARTVVGVLQDAFHKFIGQPVSIFCSSRTDAGVHALSNVCH 1458
            YL+AIEYIGTRFSG+QQQ+  RTVVGVLQ+AFHKFIGQPV IFCSSRTDAGVHALSNVCH
Sbjct: 53   YLVAIEYIGTRFSGSQQQAKDRTVVGVLQEAFHKFIGQPVKIFCSSRTDAGVHALSNVCH 112

Query: 1459 VDVERISKRKPGELLPPHEPAVVKRAVNHFLQKNEGDIMVIDVRCVPSDFHSRYKARERT 1638
            VDVERISKRKPGE+LPPHEP VV+RAVNHFLQ+ +GD+MVIDVRCVPS++H+RYKA+ERT
Sbjct: 113  VDVERISKRKPGEVLPPHEPGVVQRAVNHFLQRKDGDVMVIDVRCVPSNYHARYKAQERT 172

Query: 1639 YFYRLLSGPEPLSTFDKDRAWHVSEELDLLAMQ 1737
            YFYRLLSG +PLS  +KDR WHV EEL+L  MQ
Sbjct: 173  YFYRLLSGSDPLSILEKDRCWHVPEELNLRFMQ 205



 Score =  188 bits (478), Expect = 5e-45
 Identities = 102/170 (60%), Positives = 123/170 (72%), Gaps = 1/170 (0%)
 Frame = +1

Query: 1   MQKACKVLVGRHDFSSFRAAACQAKSPIRTLDELNVTEVVSSLYFPSVVERERSNFVAEC 180
           MQ+AC+VLVG HDFSSFRAA CQAKSP+R+LDELN+TEV S+ YFPS+ ER  SN     
Sbjct: 204 MQEACRVLVGSHDFSSFRAAGCQAKSPMRSLDELNITEVPSTPYFPSITERTLSNLN--- 260

Query: 181 SSLGVVNSETKLSHVSAIADQVNDKD-SWGEPSPVFGMRKQHRCFVVTARARSFLYHQVR 357
           +   +  S    S  + +   V + + S G  S  FG R++HRC+VVTAR+R FLYHQVR
Sbjct: 261 NGDPLACSNQPKSETAGVTTNVGEVEGSTGGDS--FGRRRRHRCYVVTARSRGFLYHQVR 318

Query: 358 LLVGVLKSVGTGELKVPDVEGILKAKTVSAASPMAPACGLYLGHVKYDLP 507
           L+VG LK VGTGEL V DVE IL+AKTVSAA PMAPA GLYL  V+Y+ P
Sbjct: 319 LIVGALKCVGTGELTVSDVERILEAKTVSAAKPMAPASGLYLARVRYEFP 368


>ref|XP_006471140.1| PREDICTED: tRNA pseudouridine synthase-like 1-like isoform X1 [Citrus
            sinensis]
          Length = 383

 Score =  283 bits (724), Expect = 2e-73
 Identities = 134/162 (82%), Positives = 152/162 (93%)
 Frame = +1

Query: 1252 MNTNPRIQRYLIAIEYIGTRFSGAQQQSNARTVVGVLQDAFHKFIGQPVSIFCSSRTDAG 1431
            M+TN RIQRYLIA+EYIGTRFSG+Q+Q N RTVVGVL++AFHKFIGQPVSI  SSRTDAG
Sbjct: 51   MSTNKRIQRYLIAVEYIGTRFSGSQKQLNCRTVVGVLEEAFHKFIGQPVSISLSSRTDAG 110

Query: 1432 VHALSNVCHVDVERISKRKPGELLPPHEPAVVKRAVNHFLQKNEGDIMVIDVRCVPSDFH 1611
            VHA SNVCHVDVERISKRKPGE+LPPH+ +VV+RAVNHFLQK+EGDIMV DVRCVPSDFH
Sbjct: 111  VHAASNVCHVDVERISKRKPGEVLPPHDSSVVRRAVNHFLQKSEGDIMVTDVRCVPSDFH 170

Query: 1612 SRYKARERTYFYRLLSGPEPLSTFDKDRAWHVSEELDLLAMQ 1737
            +R++A+ERTYFYR+LSGPEPLS F+KDRAWHV+EELDL AMQ
Sbjct: 171  ARFRAQERTYFYRILSGPEPLSVFEKDRAWHVTEELDLRAMQ 212



 Score =  186 bits (473), Expect = 2e-44
 Identities = 105/186 (56%), Positives = 123/186 (66%), Gaps = 3/186 (1%)
 Frame = +1

Query: 1   MQKACKVLVGRHDFSSFRAAACQAKSPIRTLDELNVTEVVSSLYFPSVVERERSNFVAEC 180
           MQ+ACKVLVG HDFSSFRA+ CQA SPIRTLDEL+V+EVVS+  FPS+            
Sbjct: 211 MQEACKVLVGCHDFSSFRASGCQANSPIRTLDELHVSEVVSTALFPSI------------ 258

Query: 181 SSLGVVNSETKLSHVSAIADQVNDKDSWGEP---SPVFGMRKQHRCFVVTARARSFLYHQ 351
                       +  S +   +++    G P   S VFG+RK+HR + V ARARSFLYHQ
Sbjct: 259 ------------NQDSPVLSSIDNSSKLGMPNGGSNVFGIRKKHRSYEVIARARSFLYHQ 306

Query: 352 VRLLVGVLKSVGTGELKVPDVEGILKAKTVSAASPMAPACGLYLGHVKYDLPSKT*IRLQ 531
           VRL+VGVLK+VGTGEL V DVE ILKAKTV+AASPMAPACGL LG VKYDLP        
Sbjct: 307 VRLIVGVLKAVGTGELTVSDVERILKAKTVTAASPMAPACGLSLGFVKYDLPEDDQTDAA 366

Query: 532 SSFVSC 549
            S  +C
Sbjct: 367 ESLETC 372


>ref|XP_006389535.1| hypothetical protein POPTR_0022s00690g [Populus trichocarpa]
            gi|550312358|gb|ERP48449.1| hypothetical protein
            POPTR_0022s00690g [Populus trichocarpa]
          Length = 370

 Score =  282 bits (722), Expect = 3e-73
 Identities = 141/205 (68%), Positives = 167/205 (81%)
 Frame = +1

Query: 1123 PQDNSSERPKKIARVXXXXXXXXXXXXXXXQNQQKESVFSEMKMNTNPRIQRYLIAIEYI 1302
            P+++ +ERP KI++                + ++KE+V   MK    P +QRYL+A+EYI
Sbjct: 10   PEESPNERPSKISKTLQEEGDSSE------EEEEKEAVDKSMK----PGLQRYLVAVEYI 59

Query: 1303 GTRFSGAQQQSNARTVVGVLQDAFHKFIGQPVSIFCSSRTDAGVHALSNVCHVDVERISK 1482
            GTRF G+QQQ N RTVVGVLQ+AFHKFIGQPV+I  SSRTDAGVHALSNVCHVDVERISK
Sbjct: 60   GTRFCGSQQQLNHRTVVGVLQEAFHKFIGQPVTICLSSRTDAGVHALSNVCHVDVERISK 119

Query: 1483 RKPGELLPPHEPAVVKRAVNHFLQKNEGDIMVIDVRCVPSDFHSRYKARERTYFYRLLSG 1662
            RKPGE+LPPHEPAVV++AVNHFLQK EGDIMV DVR VP+ FH+R+KA+ERTYFYRLL G
Sbjct: 120  RKPGEVLPPHEPAVVRKAVNHFLQKKEGDIMVTDVRSVPAHFHARFKAQERTYFYRLLIG 179

Query: 1663 PEPLSTFDKDRAWHVSEELDLLAMQ 1737
            PE LSTF+KDRAWHVSEELDL++MQ
Sbjct: 180  PELLSTFEKDRAWHVSEELDLVSMQ 204



 Score =  194 bits (493), Expect = 1e-46
 Identities = 102/167 (61%), Positives = 127/167 (76%)
 Frame = +1

Query: 1   MQKACKVLVGRHDFSSFRAAACQAKSPIRTLDELNVTEVVSSLYFPSVVERERSNFVAEC 180
           MQ+ACKVLVG HDFSSFRA+ CQAKSP RTL+EL+V EVVS+ YFPS+ ERE+++   E 
Sbjct: 203 MQEACKVLVGHHDFSSFRASGCQAKSPFRTLEELSVLEVVSTPYFPSITEREQNSSNGEG 262

Query: 181 SSLGVVNSETKLSHVSAIADQVNDKDSWGEPSPVFGMRKQHRCFVVTARARSFLYHQVRL 360
                   +T L    +I++      S       FG+R++HRC+V+TAR+RSFLYHQVRL
Sbjct: 263 PHSFHNKCKTGLP-TGSISNGFMAGGSNSGTDLGFGIRRRHRCYVITARSRSFLYHQVRL 321

Query: 361 LVGVLKSVGTGELKVPDVEGILKAKTVSAASPMAPACGLYLGHVKYD 501
           LVGVLKSVGTG+L V DVE IL A++++AASPMAPACGLYLGHVKY+
Sbjct: 322 LVGVLKSVGTGDLTVSDVERILNARSITAASPMAPACGLYLGHVKYE 368


>ref|XP_004485454.1| PREDICTED: tRNA pseudouridine synthase A-like isoform X2 [Cicer
            arietinum]
          Length = 343

 Score =  279 bits (714), Expect = 2e-72
 Identities = 137/202 (67%), Positives = 161/202 (79%)
 Frame = +1

Query: 1132 NSSERPKKIARVXXXXXXXXXXXXXXXQNQQKESVFSEMKMNTNPRIQRYLIAIEYIGTR 1311
            + + RP KI+++                 +Q+E    +  MN + RIQRYL+AIEYIGT 
Sbjct: 15   SDNNRPSKISKIEYPNPSYH-------DGEQEEEEEQKEGMNQHRRIQRYLVAIEYIGTH 67

Query: 1312 FSGAQQQSNARTVVGVLQDAFHKFIGQPVSIFCSSRTDAGVHALSNVCHVDVERISKRKP 1491
            FSG+Q+Q   RTVVGVL++AF KF+GQPVS+ CSSRTDAGVHALSNVCHVD+ERISKRKP
Sbjct: 68   FSGSQKQLTDRTVVGVLEEAFCKFVGQPVSVICSSRTDAGVHALSNVCHVDIERISKRKP 127

Query: 1492 GELLPPHEPAVVKRAVNHFLQKNEGDIMVIDVRCVPSDFHSRYKARERTYFYRLLSGPEP 1671
            GE+LPPHEP VV+RAVNHFLQK  GD+MVIDVRCVPSDFH+RYKA+ERTYFYRLLSG EP
Sbjct: 128  GEVLPPHEPVVVRRAVNHFLQKQNGDLMVIDVRCVPSDFHARYKAQERTYFYRLLSGSEP 187

Query: 1672 LSTFDKDRAWHVSEELDLLAMQ 1737
            LST +KDRAWHV EEL+L AMQ
Sbjct: 188  LSTLEKDRAWHVPEELNLPAMQ 209



 Score =  152 bits (383), Expect = 6e-34
 Identities = 85/145 (58%), Positives = 101/145 (69%), Gaps = 8/145 (5%)
 Frame = +1

Query: 1   MQKACKVLVGRHDFSSFRAAACQAKSPIRTLDELNVTEVVSSLYFPSVVERERSNFVAE- 177
           MQ+AC+VLVG HDFSSFRAA CQAKSPIRTLDEL+V EV+ S YFPSV++RER   VA+ 
Sbjct: 208 MQEACRVLVGHHDFSSFRAAGCQAKSPIRTLDELSVVEVIQSPYFPSVMDRERQIKVADD 267

Query: 178 ---CSS----LGVVNSETKLSHVSAIADQVNDKDSWGEPSPVFGMRKQHRCFVVTARARS 336
              C S    +  V+S  ++  V A  + V            FG R+ HRC VVTARAR+
Sbjct: 268 LHGCGSNAEAVIPVSSSARIDKVRASNEGVG-----------FGKRRYHRCLVVTARARA 316

Query: 337 FLYHQVRLLVGVLKSVGTGELKVPD 411
           FLYHQVRLLVGVLK+VGTG L +PD
Sbjct: 317 FLYHQVRLLVGVLKAVGTGNLTIPD 341


>ref|XP_004485453.1| PREDICTED: tRNA pseudouridine synthase A-like isoform X1 [Cicer
            arietinum]
          Length = 374

 Score =  279 bits (714), Expect = 2e-72
 Identities = 137/202 (67%), Positives = 161/202 (79%)
 Frame = +1

Query: 1132 NSSERPKKIARVXXXXXXXXXXXXXXXQNQQKESVFSEMKMNTNPRIQRYLIAIEYIGTR 1311
            + + RP KI+++                 +Q+E    +  MN + RIQRYL+AIEYIGT 
Sbjct: 15   SDNNRPSKISKIEYPNPSYH-------DGEQEEEEEQKEGMNQHRRIQRYLVAIEYIGTH 67

Query: 1312 FSGAQQQSNARTVVGVLQDAFHKFIGQPVSIFCSSRTDAGVHALSNVCHVDVERISKRKP 1491
            FSG+Q+Q   RTVVGVL++AF KF+GQPVS+ CSSRTDAGVHALSNVCHVD+ERISKRKP
Sbjct: 68   FSGSQKQLTDRTVVGVLEEAFCKFVGQPVSVICSSRTDAGVHALSNVCHVDIERISKRKP 127

Query: 1492 GELLPPHEPAVVKRAVNHFLQKNEGDIMVIDVRCVPSDFHSRYKARERTYFYRLLSGPEP 1671
            GE+LPPHEP VV+RAVNHFLQK  GD+MVIDVRCVPSDFH+RYKA+ERTYFYRLLSG EP
Sbjct: 128  GEVLPPHEPVVVRRAVNHFLQKQNGDLMVIDVRCVPSDFHARYKAQERTYFYRLLSGSEP 187

Query: 1672 LSTFDKDRAWHVSEELDLLAMQ 1737
            LST +KDRAWHV EEL+L AMQ
Sbjct: 188  LSTLEKDRAWHVPEELNLPAMQ 209



 Score =  208 bits (529), Expect = 7e-51
 Identities = 114/178 (64%), Positives = 130/178 (73%), Gaps = 8/178 (4%)
 Frame = +1

Query: 1   MQKACKVLVGRHDFSSFRAAACQAKSPIRTLDELNVTEVVSSLYFPSVVERERSNFVAE- 177
           MQ+AC+VLVG HDFSSFRAA CQAKSPIRTLDEL+V EV+ S YFPSV++RER   VA+ 
Sbjct: 208 MQEACRVLVGHHDFSSFRAAGCQAKSPIRTLDELSVVEVIQSPYFPSVMDRERQIKVADD 267

Query: 178 ---CSSLGV----VNSETKLSHVSAIADQVNDKDSWGEPSPVFGMRKQHRCFVVTARARS 336
              C S       V+S  ++  V A  + V            FG R+ HRC VVTARAR+
Sbjct: 268 LHGCGSNAEAVIPVSSSARIDKVRASNEGVG-----------FGKRRYHRCLVVTARARA 316

Query: 337 FLYHQVRLLVGVLKSVGTGELKVPDVEGILKAKTVSAASPMAPACGLYLGHVKYDLPS 510
           FLYHQVRLLVGVLK+VGTG L +PDVE IL AKTV+AASPMAPACGLYLG VKYDLPS
Sbjct: 317 FLYHQVRLLVGVLKAVGTGNLTIPDVERILNAKTVTAASPMAPACGLYLGEVKYDLPS 374


>ref|XP_006598748.1| PREDICTED: uncharacterized protein LOC100799818 isoform X1 [Glycine
            max]
          Length = 349

 Score =  277 bits (709), Expect = 9e-72
 Identities = 140/214 (65%), Positives = 164/214 (76%), Gaps = 2/214 (0%)
 Frame = +1

Query: 1102 KQSLDKPPQDNSSERPKKIARVXXXXXXXXXXXXXXXQNQQKESVFSEMKMNTNPR--IQ 1275
            K ++D    DN+  RP KI+ +                      +  E +M  NPR  IQ
Sbjct: 6    KHTVDLECSDNNINRPSKISIIEYPID---------------SDIDEEEEMIKNPRNGIQ 50

Query: 1276 RYLIAIEYIGTRFSGAQQQSNARTVVGVLQDAFHKFIGQPVSIFCSSRTDAGVHALSNVC 1455
            RYL+AIEYIGTRFSG+Q+Q N RTVVGVL++AF KF+GQPVS+ CSSRTDAGVHALSNVC
Sbjct: 51   RYLVAIEYIGTRFSGSQKQLNVRTVVGVLEEAFSKFVGQPVSVSCSSRTDAGVHALSNVC 110

Query: 1456 HVDVERISKRKPGELLPPHEPAVVKRAVNHFLQKNEGDIMVIDVRCVPSDFHSRYKARER 1635
            HVD++RISKR+PGE+L PHEPAVV RAVNHFLQK + D+MVIDVRCVPSDFH+R+KA+ER
Sbjct: 111  HVDIQRISKRRPGEVLTPHEPAVVGRAVNHFLQKQDSDLMVIDVRCVPSDFHARFKAQER 170

Query: 1636 TYFYRLLSGPEPLSTFDKDRAWHVSEELDLLAMQ 1737
             YFYRLLSGPEPLSTF+KDRAWHV EEL L AMQ
Sbjct: 171  IYFYRLLSGPEPLSTFEKDRAWHVPEELSLPAMQ 204



 Score =  171 bits (432), Expect = 1e-39
 Identities = 93/150 (62%), Positives = 110/150 (73%)
 Frame = +1

Query: 61  ACQAKSPIRTLDELNVTEVVSSLYFPSVVERERSNFVAECSSLGVVNSETKLSHVSAIAD 240
           A QAKSPIRTLDEL+V EV+ S YFPS+++RE+ N V+        NSET +   S   +
Sbjct: 202 AMQAKSPIRTLDELSVNEVIESPYFPSLMDREQHNKVSGDLRSCPNNSETDIPPTS---N 258

Query: 241 QVNDKDSWGEPSPVFGMRKQHRCFVVTARARSFLYHQVRLLVGVLKSVGTGELKVPDVEG 420
              DK         FG R++HRC VVTARAR+FLYHQVRLLVGVLK+VGTG L +PDVE 
Sbjct: 259 PSIDKVMASSQDVGFGKRRRHRCLVVTARARAFLYHQVRLLVGVLKAVGTGNLTIPDVER 318

Query: 421 ILKAKTVSAASPMAPACGLYLGHVKYDLPS 510
           IL A+TV+AASPMAPACGLYLG VKYDLP+
Sbjct: 319 ILNARTVTAASPMAPACGLYLGEVKYDLPT 348