BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Catharanthus22_contig00009912
         (3352 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006362214.1| PREDICTED: DNA-directed RNA polymerase III s...  1737   0.0  
ref|XP_004249732.1| PREDICTED: DNA-directed RNA polymerase III s...  1734   0.0  
ref|XP_002265454.1| PREDICTED: DNA-directed RNA polymerase III s...  1713   0.0  
ref|XP_006432385.1| hypothetical protein CICLE_v10000078mg [Citr...  1687   0.0  
ref|XP_006494572.1| PREDICTED: DNA-directed RNA polymerase III s...  1685   0.0  
gb|EOY19609.1| DNA-directed RNA polymerase isoform 1 [Theobroma ...  1680   0.0  
gb|EOY19611.1| DNA-directed RNA polymerase isoform 3 [Theobroma ...  1666   0.0  
ref|XP_002525541.1| DNA-directed RNA polymerase III subunit, put...  1644   0.0  
ref|XP_002321356.2| hypothetical protein POPTR_0015s005302g, par...  1643   0.0  
ref|XP_002321360.2| hypothetical protein POPTR_0015s005302g, par...  1643   0.0  
gb|EOY19612.1| DNA-directed RNA polymerase isoform 4 [Theobroma ...  1639   0.0  
gb|EOY19610.1| DNA-directed RNA polymerase isoform 2 [Theobroma ...  1637   0.0  
gb|EOY19614.1| DNA-directed RNA polymerase isoform 6 [Theobroma ...  1624   0.0  
gb|EOY19613.1| DNA-directed RNA polymerase isoform 5 [Theobroma ...  1623   0.0  
ref|XP_004141655.1| PREDICTED: DNA-directed RNA polymerase III s...  1622   0.0  
ref|XP_006362278.1| PREDICTED: DNA-directed RNA polymerase III s...  1617   0.0  
ref|XP_004249177.1| PREDICTED: DNA-directed RNA polymerase III s...  1600   0.0  
ref|XP_006494574.1| PREDICTED: DNA-directed RNA polymerase III s...  1577   0.0  
ref|XP_002863522.1| hypothetical protein ARALYDRAFT_917015 [Arab...  1575   0.0  
ref|XP_006398163.1| hypothetical protein EUTSA_v10000748mg [Eutr...  1572   0.0  

>ref|XP_006362214.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like isoform
            X1 [Solanum tuberosum] gi|565393087|ref|XP_006362215.1|
            PREDICTED: DNA-directed RNA polymerase III subunit
            RPC2-like isoform X2 [Solanum tuberosum]
          Length = 1153

 Score = 1737 bits (4499), Expect = 0.0
 Identities = 867/1025 (84%), Positives = 933/1025 (91%), Gaps = 5/1025 (0%)
 Frame = -1

Query: 3061 TVQEGNNDTNELGIDKSFLAAPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVSTEIKK 2882
            T+     D+N+ GIDK  LA+PIK+ VDK+QL+PEFLKVRGLVKQHLDSFNYFV TEIKK
Sbjct: 6    TMSNTTEDSNQ-GIDKQHLASPIKNLVDKYQLVPEFLKVRGLVKQHLDSFNYFVRTEIKK 64

Query: 2881 IVFANEWIRSKVDERVYLRYSDVRIGEPSMIIDGVTEKLTPHKCRLSDTTYAAPIFVNIE 2702
            IV AN+ IRS +D  +YLRY DV IGEPSM+ D VTEKL P KCRLSD TYAAPI+V IE
Sbjct: 65   IVRANQEIRSILDPNIYLRYRDVHIGEPSMVFDAVTEKLCPQKCRLSDRTYAAPIYVTIE 124

Query: 2701 YR-GQSQSTETLKKKDVIIGRMPIMLRSKTCVLYKKDEEELASLGECPLDPGGYFIIKGT 2525
            Y  G    T    KK+VIIGRMPIMLRS  CVLY KDE+ELA LGECPLDPGGYF+IKGT
Sbjct: 125  YTTGSHGQTSVSTKKNVIIGRMPIMLRSSCCVLYGKDEDELARLGECPLDPGGYFVIKGT 184

Query: 2524 EKVILIQEQLSKNRIIIDIDKKGCVQASVTSSTAMTKSKTVIKMEKEKIYLYLNQFKSKV 2345
            EKVILIQEQLSKNRIIID DKKG VQASVTSST  TKSKT+IKMEKEK+YL LN FK+KV
Sbjct: 185  EKVILIQEQLSKNRIIIDTDKKGSVQASVTSSTEKTKSKTIIKMEKEKVYLELNMFKTKV 244

Query: 2344 PIMVVMKAMGMESDQEVVQMIGRDPRYSALLLPSIEECAKANVYTQQQALDYLE--KQVK 2171
            PIMVVMKAMGMESDQEVVQMIGRDPR+SALLLPSIEECA   +YTQ QAL++LE  K +K
Sbjct: 245  PIMVVMKAMGMESDQEVVQMIGRDPRFSALLLPSIEECADLKLYTQHQALEFLESDKMLK 304

Query: 2170 QLPYPSAPVEK--RALSILADIFIANIPVRQQNFRSKCIYVAVMLRRMMEALLNKDAMDD 1997
               Y + PVEK  RALSIL DIF+AN+PV Q NFR KCIYVAVM+RRMMEA+LNKDAMDD
Sbjct: 305  MPSYSTGPVEKGARALSILRDIFLANVPVHQHNFRKKCIYVAVMMRRMMEAILNKDAMDD 364

Query: 1996 KDYVGNKRLELSGQMLSLLFEDLFKTMNDEVRKTIDAILDKPSRSSRFDISQYIVKDSIT 1817
            KDYVGNKRLELSGQ+LSLLFEDLFKTMNDE R+TID +L +PSRSSR DISQYIVKDSIT
Sbjct: 365  KDYVGNKRLELSGQLLSLLFEDLFKTMNDEARRTIDTLLARPSRSSRLDISQYIVKDSIT 424

Query: 1816 VGLERSLSTGNWDVKRFRMHRKGMTQVVARLSYIGTLGHMTKISPQFEKSRKVSGPRALQ 1637
            +GLER+LSTGNWDVKRFRMHRKGMTQVVARLSYIG+LGHMTKISPQFEKSRKVSGPRALQ
Sbjct: 425  MGLERTLSTGNWDVKRFRMHRKGMTQVVARLSYIGSLGHMTKISPQFEKSRKVSGPRALQ 484

Query: 1636 PSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPIVSLCYCLGVEDLELLSGEELH 1457
            PSQ+GMLCPCDTPEGEACGLVKNLALMTHVTTDE+E PI+SLCYCLGVEDLE LS EELH
Sbjct: 485  PSQFGMLCPCDTPEGEACGLVKNLALMTHVTTDEDERPIMSLCYCLGVEDLEQLSPEELH 544

Query: 1456 MPNSFLIILNGLILGKHRKPQRFANAMRKLRRAGKIGEFVSIYVNETQRCVYIASDGGRV 1277
            MP S+LI LNGLILGKH+ PQRFANAMR+LRRAGKIGEFVSI+VNE QRCVYIASDGGRV
Sbjct: 545  MPTSYLITLNGLILGKHKSPQRFANAMRRLRRAGKIGEFVSIFVNEKQRCVYIASDGGRV 604

Query: 1276 CRPLVIADKGVSRIKEHHMKELKDGVRNFDSFLREGLIEYLDVNEENNALIALYESEATP 1097
            CRPLVIADKGVSRIKEHHM+EL+DGVR+FDSFL++GLIEYLDVNEENN LIALYE EATP
Sbjct: 605  CRPLVIADKGVSRIKEHHMRELRDGVRDFDSFLKDGLIEYLDVNEENNTLIALYEKEATP 664

Query: 1096 ETTHIEIEPLTILGVCAGLIPFPHHNQSPRNTYQCAMGKQAMGNIAYNELCRMDTLIYLL 917
            ETTHIEIEP TILGVCAGLIP+PHHNQSPRNTYQCAMGKQAMGNIAYN+L RMD L+YLL
Sbjct: 665  ETTHIEIEPFTILGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLNRMDGLLYLL 724

Query: 916  VYPQRPLLTTKTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVM 737
            VYPQRPLLTT+TIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVM
Sbjct: 725  VYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVM 784

Query: 736  KKMSAISQKYENGTSDRIIRPQRQGYDAERMQILDDDGLAAPGEIIRPHDIYINKESPKV 557
            KK SAI QKYENGTSDRII+PQRQG++A++MQILDDDG+AAPGE IR HDIYINKESP V
Sbjct: 785  KKYSAICQKYENGTSDRIIKPQRQGFEADKMQILDDDGMAAPGETIRNHDIYINKESPTV 844

Query: 556  IRGPVTSPAGLSDSDYKPSKQTYKGPEGETAVVDRVALCSDKNNNLCIKYMIRHTRRPEV 377
             R P+TSP GL DS YK S+QTYKGPEGETAVVDRVAL SD+NNNL IK+MIRHTRRPE+
Sbjct: 845  TRTPITSPMGLPDSAYKTSRQTYKGPEGETAVVDRVALYSDRNNNLSIKFMIRHTRRPEI 904

Query: 376  GDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGSKAGV 197
            GDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGSKAGV
Sbjct: 905  GDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGSKAGV 964

Query: 196  SSGRFHYGSAFGEPSGHADTVEAISETLVNHGFSYNGKDFLYSGITGMPLQAYIYMGPIY 17
            S GRFHYGSAFGEPSGHADTV++ISETLV HGFSYNGKDF+YSGITGMPLQAYI+MGPIY
Sbjct: 965  SCGRFHYGSAFGEPSGHADTVDSISETLVKHGFSYNGKDFIYSGITGMPLQAYIFMGPIY 1024

Query: 16   YQKLK 2
            YQKLK
Sbjct: 1025 YQKLK 1029


>ref|XP_004249732.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like [Solanum
            lycopersicum]
          Length = 1183

 Score = 1734 bits (4490), Expect = 0.0
 Identities = 866/1025 (84%), Positives = 932/1025 (90%), Gaps = 5/1025 (0%)
 Frame = -1

Query: 3061 TVQEGNNDTNELGIDKSFLAAPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVSTEIKK 2882
            T+     D+N+ GIDK  LA+ IK+ VDK+QL+PEFLKVRGLVKQHLDSFNYFV TEIKK
Sbjct: 36   TMSNTTEDSNQ-GIDKQHLASHIKNLVDKYQLVPEFLKVRGLVKQHLDSFNYFVRTEIKK 94

Query: 2881 IVFANEWIRSKVDERVYLRYSDVRIGEPSMIIDGVTEKLTPHKCRLSDTTYAAPIFVNIE 2702
            IV AN+ IRS +D  +YLRY DV IGEPSM+ D VTEKL P KCRLSD TYAAPI+V I+
Sbjct: 95   IVRANQEIRSTLDPNIYLRYRDVHIGEPSMVFDAVTEKLCPQKCRLSDRTYAAPIYVTID 154

Query: 2701 YR-GQSQSTETLKKKDVIIGRMPIMLRSKTCVLYKKDEEELASLGECPLDPGGYFIIKGT 2525
            Y  G    T    KK+VIIGRMPIMLRS  CVLY KDE+ELA LGECPLDPGGYF+IKGT
Sbjct: 155  YTTGSHGQTSVSTKKNVIIGRMPIMLRSSCCVLYGKDEDELARLGECPLDPGGYFVIKGT 214

Query: 2524 EKVILIQEQLSKNRIIIDIDKKGCVQASVTSSTAMTKSKTVIKMEKEKIYLYLNQFKSKV 2345
            EKVILIQEQLSKNRIIID DKKG VQASVTSST  TKSKT+IKMEKEK+YL LN FK+KV
Sbjct: 215  EKVILIQEQLSKNRIIIDTDKKGSVQASVTSSTEKTKSKTIIKMEKEKVYLELNMFKTKV 274

Query: 2344 PIMVVMKAMGMESDQEVVQMIGRDPRYSALLLPSIEECAKANVYTQQQALDYLE--KQVK 2171
            PIMVVMKAMGMESDQEVVQMIGRDPR+SALLLPSIEECA   +YTQQQAL++LE  K +K
Sbjct: 275  PIMVVMKAMGMESDQEVVQMIGRDPRFSALLLPSIEECADLKLYTQQQALEFLESDKMLK 334

Query: 2170 QLPYPSAPVEK--RALSILADIFIANIPVRQQNFRSKCIYVAVMLRRMMEALLNKDAMDD 1997
               Y + P+EK  RALSIL DIF+AN+PV Q NFR KCIYVAVM+RRMMEA+LNKDAMDD
Sbjct: 335  MPSYSTGPIEKGARALSILRDIFLANVPVHQHNFRKKCIYVAVMMRRMMEAILNKDAMDD 394

Query: 1996 KDYVGNKRLELSGQMLSLLFEDLFKTMNDEVRKTIDAILDKPSRSSRFDISQYIVKDSIT 1817
            KDYVGNKRLELSGQ+LSLLFEDLFKTMNDE R+TID +L +PSRSSR DISQYI+KDSIT
Sbjct: 395  KDYVGNKRLELSGQLLSLLFEDLFKTMNDEARRTIDTLLARPSRSSRLDISQYIIKDSIT 454

Query: 1816 VGLERSLSTGNWDVKRFRMHRKGMTQVVARLSYIGTLGHMTKISPQFEKSRKVSGPRALQ 1637
            +GLER+LSTGNWDVKRFRMHRKGMTQVVARLSYIG+LGHMTKISPQFEKSRKVSGPRALQ
Sbjct: 455  MGLERTLSTGNWDVKRFRMHRKGMTQVVARLSYIGSLGHMTKISPQFEKSRKVSGPRALQ 514

Query: 1636 PSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPIVSLCYCLGVEDLELLSGEELH 1457
            PSQ+GMLCPCDTPEGEACGLVKNLALMTHVTTDE+E PI+SLCYCLGVEDLE LS EELH
Sbjct: 515  PSQFGMLCPCDTPEGEACGLVKNLALMTHVTTDEDERPIMSLCYCLGVEDLEQLSPEELH 574

Query: 1456 MPNSFLIILNGLILGKHRKPQRFANAMRKLRRAGKIGEFVSIYVNETQRCVYIASDGGRV 1277
            MP S+LI LNGLILGKH+ PQRFANAMR+LRRAGK+GEFVSI+VNE QRCVYIASDGGRV
Sbjct: 575  MPTSYLITLNGLILGKHKSPQRFANAMRRLRRAGKVGEFVSIFVNEKQRCVYIASDGGRV 634

Query: 1276 CRPLVIADKGVSRIKEHHMKELKDGVRNFDSFLREGLIEYLDVNEENNALIALYESEATP 1097
            CRPLVIADKGVSRIKEHHM+EL+DG+R+FDSFL++GLIEYLDVNEENN LIALYE EATP
Sbjct: 635  CRPLVIADKGVSRIKEHHMRELRDGLRDFDSFLKDGLIEYLDVNEENNTLIALYEKEATP 694

Query: 1096 ETTHIEIEPLTILGVCAGLIPFPHHNQSPRNTYQCAMGKQAMGNIAYNELCRMDTLIYLL 917
            ETTHIEIEP TILGVCAGLIP+PHHNQSPRNTYQCAMGKQAMGNIAYN+L RMD L+YLL
Sbjct: 695  ETTHIEIEPFTILGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLNRMDGLLYLL 754

Query: 916  VYPQRPLLTTKTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVM 737
            VYPQRPLLTT+TIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVM
Sbjct: 755  VYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVM 814

Query: 736  KKMSAISQKYENGTSDRIIRPQRQGYDAERMQILDDDGLAAPGEIIRPHDIYINKESPKV 557
            KK SAI QKYENGTSDRII+PQRQG +A+RMQILDDDG+AAPGE IR HDIYINKESP V
Sbjct: 815  KKYSAICQKYENGTSDRIIKPQRQGPEADRMQILDDDGMAAPGETIRNHDIYINKESPTV 874

Query: 556  IRGPVTSPAGLSDSDYKPSKQTYKGPEGETAVVDRVALCSDKNNNLCIKYMIRHTRRPEV 377
             R PVTSP GL DS YK SKQTYKGPEGETAVVDRVAL SD+NNNL IK+MIRHTRRPE+
Sbjct: 875  TRTPVTSPMGLPDSAYKSSKQTYKGPEGETAVVDRVALYSDRNNNLSIKFMIRHTRRPEL 934

Query: 376  GDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGSKAGV 197
            GDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGSKAGV
Sbjct: 935  GDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGSKAGV 994

Query: 196  SSGRFHYGSAFGEPSGHADTVEAISETLVNHGFSYNGKDFLYSGITGMPLQAYIYMGPIY 17
            S GRFHYGSAFGEPSGHADTV+AISETLV HGFSYNGKDF+YSGITGMPLQAYI+MGPIY
Sbjct: 995  SCGRFHYGSAFGEPSGHADTVDAISETLVKHGFSYNGKDFIYSGITGMPLQAYIFMGPIY 1054

Query: 16   YQKLK 2
            YQKLK
Sbjct: 1055 YQKLK 1059


>ref|XP_002265454.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Vitis
            vinifera]
          Length = 1142

 Score = 1713 bits (4436), Expect = 0.0
 Identities = 844/1015 (83%), Positives = 924/1015 (91%), Gaps = 6/1015 (0%)
 Frame = -1

Query: 3028 LGIDKSFLAAPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVSTEIKKIVFANEWIRSK 2849
            + I K F A P+K AVDKF LLPEFLKVRGLVKQHLDSFNYFV T+IKKIV AN+ I S 
Sbjct: 4    MSIHKHFPADPVKQAVDKFPLLPEFLKVRGLVKQHLDSFNYFVKTDIKKIVRANDRIVSS 63

Query: 2848 VDERVYLRYSDVRIGEPSMIIDGVTEKLTPHKCRLSDTTYAAPIFVNIEYRGQSQSTET- 2672
            VD  +YLR+ DVRIGEPS+ +DG++EKL PH CRLSD TYAAPI VNIEY   S   +T 
Sbjct: 64   VDPSIYLRFKDVRIGEPSITVDGISEKLNPHTCRLSDMTYAAPILVNIEYITGSHVQKTR 123

Query: 2671 LKKKDVIIGRMPIMLRSKTCVLYKKDEEELASLGECPLDPGGYFIIKGTEKVILIQEQLS 2492
            ++K DV+IGRMPIMLRS  CVLYKKDE ELA LGECPLDPGGYF++KGTEKVILIQEQLS
Sbjct: 124  VEKNDVVIGRMPIMLRSCCCVLYKKDEAELARLGECPLDPGGYFVVKGTEKVILIQEQLS 183

Query: 2491 KNRIIIDIDKKGCVQASVTSSTAMTKSKTVIKMEKEKIYLYLNQFKSKVPIMVVMKAMGM 2312
            KNRIIID DKKG + ASVTSST  TKSKTVI MEKEKI+L LNQF SK+PIM+VMKAMGM
Sbjct: 184  KNRIIIDTDKKGNINASVTSSTESTKSKTVIVMEKEKIWLQLNQFTSKIPIMIVMKAMGM 243

Query: 2311 ESDQEVVQMIGRDPRYSALLLPSIEECAKANVYTQQQALDYLEKQVKQLPY--PSAPVEK 2138
            ESDQEVVQM+GR+PRYSALLLPS+EECA   +YTQQQAL++LE++VK+LP+  PS   E 
Sbjct: 244  ESDQEVVQMVGRNPRYSALLLPSMEECASHGIYTQQQALEFLERKVKKLPFYNPSLEKEG 303

Query: 2137 RALSILADIFIANIPVRQQNFRSKCIYVAVMLRRMMEALLNKDAMDDKDYVGNKRLELSG 1958
            R ++IL D FIAN+PVRQ NFR KC+YVAVMLRRMM+A+LNKDAMDDKDYVGNKRLELSG
Sbjct: 304  RGMAILRDTFIANVPVRQNNFRPKCLYVAVMLRRMMDAILNKDAMDDKDYVGNKRLELSG 363

Query: 1957 QMLSLLFEDLFKTMNDEVRKTIDAILDKPSRSSRFDISQ---YIVKDSITVGLERSLSTG 1787
            Q++SLLFEDLFKTM  EV+KTIDAIL KPSRSSRFD SQ   +IV+DSITVGLER+LSTG
Sbjct: 364  QLISLLFEDLFKTMISEVKKTIDAILAKPSRSSRFDFSQCLRFIVRDSITVGLERTLSTG 423

Query: 1786 NWDVKRFRMHRKGMTQVVARLSYIGTLGHMTKISPQFEKSRKVSGPRALQPSQWGMLCPC 1607
            NWDVKRFRMHRKGM+QVVARLSYIG+LGHMTKISPQFEKSRKVSGPRALQPSQWGMLCPC
Sbjct: 424  NWDVKRFRMHRKGMSQVVARLSYIGSLGHMTKISPQFEKSRKVSGPRALQPSQWGMLCPC 483

Query: 1606 DTPEGEACGLVKNLALMTHVTTDEEEGPIVSLCYCLGVEDLELLSGEELHMPNSFLIILN 1427
            DTPEGEACGLVKNLALMTHVTTDEEE P++SLCY LGVEDLELLSGEELH PNSFLII N
Sbjct: 484  DTPEGEACGLVKNLALMTHVTTDEEESPLISLCYSLGVEDLELLSGEELHTPNSFLIIFN 543

Query: 1426 GLILGKHRKPQRFANAMRKLRRAGKIGEFVSIYVNETQRCVYIASDGGRVCRPLVIADKG 1247
            GLILGKHR+PQRFANA+RKLRRAGKIGEFVS++VNE Q CVYIASDGGRVCRP+VIADKG
Sbjct: 544  GLILGKHRRPQRFANALRKLRRAGKIGEFVSVFVNEKQHCVYIASDGGRVCRPVVIADKG 603

Query: 1246 VSRIKEHHMKELKDGVRNFDSFLREGLIEYLDVNEENNALIALYESEATPETTHIEIEPL 1067
             SRIKEHHMKEL DGVR FD FLR+GLIEYLDVNEENNALIALYE++A PETTHIEIEP 
Sbjct: 604  KSRIKEHHMKELIDGVRTFDDFLRDGLIEYLDVNEENNALIALYEADAKPETTHIEIEPF 663

Query: 1066 TILGVCAGLIPFPHHNQSPRNTYQCAMGKQAMGNIAYNELCRMDTLIYLLVYPQRPLLTT 887
            TILGVCAGLIPFPHHNQSPRNTYQCAMGKQAMGNIAYN+LCRMD+L+YLLVYPQRPLLTT
Sbjct: 664  TILGVCAGLIPFPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDSLLYLLVYPQRPLLTT 723

Query: 886  KTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMKKMSAISQKY 707
            +TIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMKK SA++Q+Y
Sbjct: 724  RTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMKKFSAVNQRY 783

Query: 706  ENGTSDRIIRPQRQGYDAERMQILDDDGLAAPGEIIRPHDIYINKESPKVIRGPVTSPAG 527
            EN  SDRI+RP + G+DAERMQILDDDGLAAPGEII+P+DIYINKESP + +GP+ SP G
Sbjct: 784  ENNASDRIVRPLKVGHDAERMQILDDDGLAAPGEIIKPNDIYINKESPIITKGPLISPVG 843

Query: 526  LSDSDYKPSKQTYKGPEGETAVVDRVALCSDKNNNLCIKYMIRHTRRPEVGDKFSSRHGQ 347
            L DS YKPS+QT+KGPEGE +VVDRVALCSDKN+NLCIK++IRHTRRPEVGDKFSSRHGQ
Sbjct: 844  LPDSAYKPSRQTFKGPEGEASVVDRVALCSDKNSNLCIKFLIRHTRRPEVGDKFSSRHGQ 903

Query: 346  KGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGSKAGVSSGRFHYGSA 167
            KGVCGTI+QQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLG KAGVS GRFHYGSA
Sbjct: 904  KGVCGTIIQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSA 963

Query: 166  FGEPSGHADTVEAISETLVNHGFSYNGKDFLYSGITGMPLQAYIYMGPIYYQKLK 2
            FGEPSGHAD VE IS+TLV HGFSY+GKDF+YSGITG PLQAYI+MGPIYYQKLK
Sbjct: 964  FGEPSGHADKVETISKTLVKHGFSYSGKDFIYSGITGCPLQAYIFMGPIYYQKLK 1018


>ref|XP_006432385.1| hypothetical protein CICLE_v10000078mg [Citrus clementina]
            gi|557534507|gb|ESR45625.1| hypothetical protein
            CICLE_v10000078mg [Citrus clementina]
          Length = 1149

 Score = 1687 bits (4368), Expect = 0.0
 Identities = 830/1024 (81%), Positives = 922/1024 (90%), Gaps = 3/1024 (0%)
 Frame = -1

Query: 3064 MTVQEGNNDTNELGIDKSFLAAPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVSTEIK 2885
            M V+E   D  E   DK  LAAP+KS VDKFQLLPEFLKVRGLVKQHLDSFNYFV+T I+
Sbjct: 4    MQVEESPKD--EQLPDKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIR 61

Query: 2884 KIVFANEWIRSKVDERVYLRYSDVRIGEPSMIIDGVTEKLTPHKCRLSDTTYAAPIFVNI 2705
            KIV AN+ I S +D  ++LR+ DVRIG+PSM +DGV+EKL PH CRLSD TYAAPI VNI
Sbjct: 62   KIVRANDRIVSGIDPSIFLRFKDVRIGQPSMTVDGVSEKLNPHMCRLSDMTYAAPILVNI 121

Query: 2704 EY-RGQSQSTETLKKKDVIIGRMPIMLRSKTCVLYKKDEEELASLGECPLDPGGYFIIKG 2528
            EY +G      T++K DV+IGR+PIMLRS  CVLY KDE ELA LGECPLDPGGYFIIKG
Sbjct: 122  EYVQGSHTEKTTMEKNDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKG 181

Query: 2527 TEKVILIQEQLSKNRIIIDIDKKGCVQASVTSSTAMTKSKTVIKMEKEKIYLYLNQFKSK 2348
            TEKV+LIQEQLSKNR+IID DKKG + ASVTSST   KSKTVI+MEK K+YL LNQF  K
Sbjct: 182  TEKVLLIQEQLSKNRVIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKK 241

Query: 2347 VPIMVVMKAMGMESDQEVVQMIGRDPRYSALLLPSIEECAKANVYTQQQALDYLEKQVKQ 2168
            +PIMVVMKAMGMESDQEVVQM+GRDPRYSALLLPSIEECA  ++YTQ++AL+YLE +VK+
Sbjct: 242  IPIMVVMKAMGMESDQEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKR 301

Query: 2167 LPYPSAPVEK--RALSILADIFIANIPVRQQNFRSKCIYVAVMLRRMMEALLNKDAMDDK 1994
              + S P ++  RA SIL D+F+AN+PV   NFR KC YVAVMLRRM+EA+LNKDAMDDK
Sbjct: 302  STFGSPPNDREGRAFSILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDK 361

Query: 1993 DYVGNKRLELSGQMLSLLFEDLFKTMNDEVRKTIDAILDKPSRSSRFDISQYIVKDSITV 1814
            DYVGNKRLELSGQ++SLLFEDLFKTM  EV+KT+D IL KPSRSSRFD+SQ+IV+DSITV
Sbjct: 362  DYVGNKRLELSGQLVSLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITV 421

Query: 1813 GLERSLSTGNWDVKRFRMHRKGMTQVVARLSYIGTLGHMTKISPQFEKSRKVSGPRALQP 1634
            GLER+LSTGN+DVKRF+MHRKGMTQV+ARLS+IGTLGHMT++SPQFEKSRKVSGPRALQP
Sbjct: 422  GLERTLSTGNFDVKRFKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQP 481

Query: 1633 SQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPIVSLCYCLGVEDLELLSGEELHM 1454
            SQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGP++SLCYCLGVEDLELLSGEELH 
Sbjct: 482  SQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHN 541

Query: 1453 PNSFLIILNGLILGKHRKPQRFANAMRKLRRAGKIGEFVSIYVNETQRCVYIASDGGRVC 1274
            PNSFL+I NGLILGKHR+P+ FA+ MRKLRRAGKIGEFVS++VNE QRCVYIASDGGRVC
Sbjct: 542  PNSFLVIFNGLILGKHRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVC 601

Query: 1273 RPLVIADKGVSRIKEHHMKELKDGVRNFDSFLREGLIEYLDVNEENNALIALYESEATPE 1094
            RPLVIADKG+SRIKEHHMKEL DGVR+FD FLREGLIEYLDVNEENNALIALYE +ATP+
Sbjct: 602  RPLVIADKGISRIKEHHMKELSDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPD 661

Query: 1093 TTHIEIEPLTILGVCAGLIPFPHHNQSPRNTYQCAMGKQAMGNIAYNELCRMDTLIYLLV 914
            TTHIEIEP TILGV AGLIP+PHHNQSPRNTYQCAMGKQAMGNIA+N+LCRMD+L+YLLV
Sbjct: 662  TTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLV 721

Query: 913  YPQRPLLTTKTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMK 734
            YPQRPLLTT+TIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIV+K
Sbjct: 722  YPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVK 781

Query: 733  KMSAISQKYENGTSDRIIRPQRQGYDAERMQILDDDGLAAPGEIIRPHDIYINKESPKVI 554
            K +AI+QKY N TSDRI+RP R G  +ERMQILDDDGLAAPGEII+P+D+YINKESP   
Sbjct: 782  KYTAINQKYANSTSDRILRPDRTGPGSERMQILDDDGLAAPGEIIKPNDVYINKESPLET 841

Query: 553  RGPVTSPAGLSDSDYKPSKQTYKGPEGETAVVDRVALCSDKNNNLCIKYMIRHTRRPEVG 374
            RG + SP G +DS Y+ ++QTYKGP+GET VVDRVALCSDKN +LCIK++IRHTRRPE+G
Sbjct: 842  RGSIMSPTGQTDSRYRSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELG 901

Query: 373  DKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGSKAGVS 194
            DKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLG KAGVS
Sbjct: 902  DKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVS 961

Query: 193  SGRFHYGSAFGEPSGHADTVEAISETLVNHGFSYNGKDFLYSGITGMPLQAYIYMGPIYY 14
             GRFHYGSAFGEPSGHADTVE+ISETLV HGFSYNGKD +YSGITG PLQAYI+MGPIYY
Sbjct: 962  CGRFHYGSAFGEPSGHADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYY 1021

Query: 13   QKLK 2
            QKLK
Sbjct: 1022 QKLK 1025


>ref|XP_006494572.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like isoform
            X1 [Citrus sinensis] gi|568883651|ref|XP_006494573.1|
            PREDICTED: DNA-directed RNA polymerase III subunit
            RPC2-like isoform X2 [Citrus sinensis]
          Length = 1149

 Score = 1685 bits (4363), Expect = 0.0
 Identities = 825/1009 (81%), Positives = 916/1009 (90%), Gaps = 3/1009 (0%)
 Frame = -1

Query: 3019 DKSFLAAPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVSTEIKKIVFANEWIRSKVDE 2840
            DK  LAAP+KS VDKFQLLPEFLKVRGLVKQHLDSFNYFV+T I+KIV AN+ I S +D 
Sbjct: 17   DKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDP 76

Query: 2839 RVYLRYSDVRIGEPSMIIDGVTEKLTPHKCRLSDTTYAAPIFVNIEY-RGQSQSTETLKK 2663
             ++LR+ DVRIG+PSM +DGV+EKL PH CRLSD TYAAPI VNIEY +G      T++K
Sbjct: 77   SIFLRFKDVRIGQPSMTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEK 136

Query: 2662 KDVIIGRMPIMLRSKTCVLYKKDEEELASLGECPLDPGGYFIIKGTEKVILIQEQLSKNR 2483
             DV+IGR+PIMLRS  CVLY KDE ELA LGECPLDPGGYFIIKGTEKV+LIQEQLSKNR
Sbjct: 137  NDVVIGRIPIMLRSCRCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNR 196

Query: 2482 IIIDIDKKGCVQASVTSSTAMTKSKTVIKMEKEKIYLYLNQFKSKVPIMVVMKAMGMESD 2303
            +IID DKKG + ASVTSST   KSKTVI+MEK K+YL LNQF  K+PIMVVMKAMG+ESD
Sbjct: 197  VIIDTDKKGNINASVTSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGIESD 256

Query: 2302 QEVVQMIGRDPRYSALLLPSIEECAKANVYTQQQALDYLEKQVKQLPYPSAPVEK--RAL 2129
            QEVVQM+GRDPRYSALLLPSIEECA  ++YTQ++AL+YLE +VK+  + S P ++  RA 
Sbjct: 257  QEVVQMVGRDPRYSALLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAF 316

Query: 2128 SILADIFIANIPVRQQNFRSKCIYVAVMLRRMMEALLNKDAMDDKDYVGNKRLELSGQML 1949
            SIL D+F+AN+PV   NFR KC YVAVMLRRM+EA+LNKDAMDDKDYVGNKRLELSGQ++
Sbjct: 317  SILRDVFLANVPVHNNNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLV 376

Query: 1948 SLLFEDLFKTMNDEVRKTIDAILDKPSRSSRFDISQYIVKDSITVGLERSLSTGNWDVKR 1769
            SLLFEDLFKTM  EV+KT+D IL KPSRSSRFD+SQ+IV+DSITVGLER+LSTGN+DVKR
Sbjct: 377  SLLFEDLFKTMISEVQKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKR 436

Query: 1768 FRMHRKGMTQVVARLSYIGTLGHMTKISPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGE 1589
            F+MHRKGMTQV+ARLS+IGTLGHMT++SPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGE
Sbjct: 437  FKMHRKGMTQVLARLSFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGE 496

Query: 1588 ACGLVKNLALMTHVTTDEEEGPIVSLCYCLGVEDLELLSGEELHMPNSFLIILNGLILGK 1409
            ACGLVKNLALMTHVTTDEEEGP++SLCYCLGVEDLELLSGEELH PNSFL+I NGLILGK
Sbjct: 497  ACGLVKNLALMTHVTTDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGK 556

Query: 1408 HRKPQRFANAMRKLRRAGKIGEFVSIYVNETQRCVYIASDGGRVCRPLVIADKGVSRIKE 1229
            HR+P+ FA+ MRKLRRAGKIGEFVS++VNE QRCVYIASDGGRVCRPLVIADKG+SRIKE
Sbjct: 557  HRRPKCFADVMRKLRRAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKE 616

Query: 1228 HHMKELKDGVRNFDSFLREGLIEYLDVNEENNALIALYESEATPETTHIEIEPLTILGVC 1049
            HHMKEL DGVR+FD FLREGLIEYLDVNEENNALIALYE +ATP+TTHIEIEP TILGV 
Sbjct: 617  HHMKELLDGVRSFDDFLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGVI 676

Query: 1048 AGLIPFPHHNQSPRNTYQCAMGKQAMGNIAYNELCRMDTLIYLLVYPQRPLLTTKTIELV 869
            AGLIP+PHHNQSPRNTYQCAMGKQAMGNIA+N+LCRMD+L+YLLVYPQRPLLTT+TIELV
Sbjct: 677  AGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELV 736

Query: 868  GYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMKKMSAISQKYENGTSD 689
            GYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIV+KK +AI+QKY N TSD
Sbjct: 737  GYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSD 796

Query: 688  RIIRPQRQGYDAERMQILDDDGLAAPGEIIRPHDIYINKESPKVIRGPVTSPAGLSDSDY 509
            RI+RP R G  AERMQILDDDGLAAPGEII+P+D+YINKESP   RG + SP G +DS Y
Sbjct: 797  RILRPDRTGPGAERMQILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRY 856

Query: 508  KPSKQTYKGPEGETAVVDRVALCSDKNNNLCIKYMIRHTRRPEVGDKFSSRHGQKGVCGT 329
            + ++QTYKGP+GET VVDRVALCSDKN +LCIK++IRHTRRPE+GDKFSSRHGQKGVCGT
Sbjct: 857  RSARQTYKGPDGETCVVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGT 916

Query: 328  IVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGSKAGVSSGRFHYGSAFGEPSG 149
            IVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLG KAGVS GRFHYGSAFGEPSG
Sbjct: 917  IVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSG 976

Query: 148  HADTVEAISETLVNHGFSYNGKDFLYSGITGMPLQAYIYMGPIYYQKLK 2
            HADTVE+ISETLV HGFSYNGKD +YSGITG PLQAYI+MGPIYYQKLK
Sbjct: 977  HADTVESISETLVKHGFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLK 1025


>gb|EOY19609.1| DNA-directed RNA polymerase isoform 1 [Theobroma cacao]
          Length = 1158

 Score = 1681 bits (4352), Expect = 0.0
 Identities = 830/1019 (81%), Positives = 918/1019 (90%), Gaps = 4/1019 (0%)
 Frame = -1

Query: 3046 NNDTNELGIDKSFLAAPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVSTEIKKIVFAN 2867
            N++ +E+ +DK  LAAPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFV+T IKKIV AN
Sbjct: 16   NSNVSEMPVDKQKLAAPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIKKIVRAN 75

Query: 2866 EWIRSKVDERVYLRYSDVRIGEPSMIIDGVTEKLTPHKCRLSDTTYAAPIFVNIEYRGQS 2687
            + I S VD  +YLR+ DVRIGEPSM I+ V+EK+ PH CRLSD TYAAPIFVNIEY   S
Sbjct: 76   DRIVSGVDPSIYLRFKDVRIGEPSMTINAVSEKINPHTCRLSDMTYAAPIFVNIEYIQGS 135

Query: 2686 QSTET-LKKKDVIIGRMPIMLRSKTCVLYKKDEEELASLGECPLDPGGYFIIKGTEKVIL 2510
               +T L+K D++IGRMPIMLRS  CVLY KDE ELA LGECPLDPGGYF+IKG EKVIL
Sbjct: 136  HGQKTRLEKNDLVIGRMPIMLRSCCCVLYGKDEAELARLGECPLDPGGYFVIKGAEKVIL 195

Query: 2509 IQEQLSKNRIIIDIDKKGCVQASVTSSTAMTKSKTVIKMEKEKIYLYLNQFKSKVPIMVV 2330
            IQEQLSKNRIIID DKKG + ASVTSS+  TKSKTVI+MEKEKIYL LNQF  K+PIMVV
Sbjct: 196  IQEQLSKNRIIIDADKKGNINASVTSSSEATKSKTVIQMEKEKIYLLLNQFVKKIPIMVV 255

Query: 2329 MKAMGMESDQEVVQMIGRDPRYSALLLPSIEECAKANVYTQQQALDYLEKQVKQLPY--P 2156
            MKAMGMESDQEVVQM+GRDP Y+A+LLPSIEECA   +YTQ+QAL+YLE +VK++ Y  P
Sbjct: 256  MKAMGMESDQEVVQMVGRDPHYNAVLLPSIEECAGVGIYTQEQALEYLETKVKRVMYTGP 315

Query: 2155 SAPVEKRALSILADIFIANIPVRQQNFRSKCIYVAVMLRRMMEALLNKDAMDDKDYVGNK 1976
            ++  E RALSIL D+F+AN+PVR  NFR KC+YVAVMLRRM+EA+LNKDAMDDKDYVGNK
Sbjct: 316  ASEKEGRALSILRDVFLANVPVRSNNFRPKCLYVAVMLRRMVEAILNKDAMDDKDYVGNK 375

Query: 1975 RLELSGQMLSLLFEDLFKTMNDEVRKTIDAILDKPSRSSRFDISQYI-VKDSITVGLERS 1799
            RLELSGQ++SLLFEDLFKT   EV+K ID +L KPSRSS  D SQ++  +++IT GLER+
Sbjct: 376  RLELSGQLISLLFEDLFKTTISEVQKMIDLVLSKPSRSSALDPSQFLRSRETITFGLERT 435

Query: 1798 LSTGNWDVKRFRMHRKGMTQVVARLSYIGTLGHMTKISPQFEKSRKVSGPRALQPSQWGM 1619
            LSTGN+D+KRF+MHRKGMTQV+ARLS+IGTLG+MTK+SPQFEKSRKVSGPRALQPSQWGM
Sbjct: 436  LSTGNFDIKRFKMHRKGMTQVLARLSFIGTLGYMTKVSPQFEKSRKVSGPRALQPSQWGM 495

Query: 1618 LCPCDTPEGEACGLVKNLALMTHVTTDEEEGPIVSLCYCLGVEDLELLSGEELHMPNSFL 1439
            LCPCDTPEGEACGLVKNLALMTHVTTDE+EGP++SLCYCLGVEDLELLSGEELH PNSFL
Sbjct: 496  LCPCDTPEGEACGLVKNLALMTHVTTDEDEGPLISLCYCLGVEDLELLSGEELHTPNSFL 555

Query: 1438 IILNGLILGKHRKPQRFANAMRKLRRAGKIGEFVSIYVNETQRCVYIASDGGRVCRPLVI 1259
            +ILNGLILGKHR+PQ FA AMRKLRRAGK+GEFVS++VNE QRCVYIASDGGRVCRPLVI
Sbjct: 556  VILNGLILGKHRRPQHFAVAMRKLRRAGKVGEFVSVFVNEKQRCVYIASDGGRVCRPLVI 615

Query: 1258 ADKGVSRIKEHHMKELKDGVRNFDSFLREGLIEYLDVNEENNALIALYESEATPETTHIE 1079
            ADKGVSRIKEHHMKEL DGVR FD FLR+GLIEYLDVNEENNALIALYE EATPETTHIE
Sbjct: 616  ADKGVSRIKEHHMKELLDGVRTFDDFLRDGLIEYLDVNEENNALIALYEGEATPETTHIE 675

Query: 1078 IEPLTILGVCAGLIPFPHHNQSPRNTYQCAMGKQAMGNIAYNELCRMDTLIYLLVYPQRP 899
            IEP TILGVCAGLIP+PHHNQSPRNTYQCAMGKQAMGNIAYN+LCRMDTL+YLLVYPQRP
Sbjct: 676  IEPFTILGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDTLLYLLVYPQRP 735

Query: 898  LLTTKTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMKKMSAI 719
            LLTT+TIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMK+ SA+
Sbjct: 736  LLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMKRYSAV 795

Query: 718  SQKYENGTSDRIIRPQRQGYDAERMQILDDDGLAAPGEIIRPHDIYINKESPKVIRGPVT 539
            +QKYE G SDRI+RPQR G  +ERMQILDDDG+A PGEIIRP+DIYINKES    RG   
Sbjct: 796  NQKYETGASDRILRPQRTGPGSERMQILDDDGIATPGEIIRPNDIYINKESSIHTRGSRV 855

Query: 538  SPAGLSDSDYKPSKQTYKGPEGETAVVDRVALCSDKNNNLCIKYMIRHTRRPEVGDKFSS 359
            S   L DS Y+P++QTYKGPEGE+ VVDRVALC+D+N+NL IK++IRHTRRPEVGDKFSS
Sbjct: 856  SSESLPDSAYRPARQTYKGPEGESCVVDRVALCTDRNSNLSIKFLIRHTRRPEVGDKFSS 915

Query: 358  RHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGSKAGVSSGRFH 179
            RHGQKGVCGTI+QQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLG KAGVS GRFH
Sbjct: 916  RHGQKGVCGTIIQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFH 975

Query: 178  YGSAFGEPSGHADTVEAISETLVNHGFSYNGKDFLYSGITGMPLQAYIYMGPIYYQKLK 2
            YGSAFGEPSGHAD VEAISETL+ HGFSYNGKDF+YSGITG PLQAYI+MGPIYYQKLK
Sbjct: 976  YGSAFGEPSGHADRVEAISETLIKHGFSYNGKDFIYSGITGCPLQAYIFMGPIYYQKLK 1034


>gb|EOY19611.1| DNA-directed RNA polymerase isoform 3 [Theobroma cacao]
          Length = 1153

 Score = 1666 bits (4315), Expect = 0.0
 Identities = 825/1019 (80%), Positives = 913/1019 (89%), Gaps = 4/1019 (0%)
 Frame = -1

Query: 3046 NNDTNELGIDKSFLAAPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVSTEIKKIVFAN 2867
            N++ +E+ +DK  LAAPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFV+T IKKIV AN
Sbjct: 16   NSNVSEMPVDKQKLAAPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIKKIVRAN 75

Query: 2866 EWIRSKVDERVYLRYSDVRIGEPSMIIDGVTEKLTPHKCRLSDTTYAAPIFVNIEYRGQS 2687
            + I S VD  +YLR+ DVRIGEPSM I+ V+EK+ PH CRLSD TYAAPIFVNIEY   S
Sbjct: 76   DRIVSGVDPSIYLRFKDVRIGEPSMTINAVSEKINPHTCRLSDMTYAAPIFVNIEYIQGS 135

Query: 2686 QSTET-LKKKDVIIGRMPIMLRSKTCVLYKKDEEELASLGECPLDPGGYFIIKGTEKVIL 2510
               +T L+K D++IGRMPIMLRS  CVLY KDE ELA LGECPLDPGGYF+IKG EK   
Sbjct: 136  HGQKTRLEKNDLVIGRMPIMLRSCCCVLYGKDEAELARLGECPLDPGGYFVIKGAEK--- 192

Query: 2509 IQEQLSKNRIIIDIDKKGCVQASVTSSTAMTKSKTVIKMEKEKIYLYLNQFKSKVPIMVV 2330
              EQLSKNRIIID DKKG + ASVTSS+  TKSKTVI+MEKEKIYL LNQF  K+PIMVV
Sbjct: 193  --EQLSKNRIIIDADKKGNINASVTSSSEATKSKTVIQMEKEKIYLLLNQFVKKIPIMVV 250

Query: 2329 MKAMGMESDQEVVQMIGRDPRYSALLLPSIEECAKANVYTQQQALDYLEKQVKQLPY--P 2156
            MKAMGMESDQEVVQM+GRDP Y+A+LLPSIEECA   +YTQ+QAL+YLE +VK++ Y  P
Sbjct: 251  MKAMGMESDQEVVQMVGRDPHYNAVLLPSIEECAGVGIYTQEQALEYLETKVKRVMYTGP 310

Query: 2155 SAPVEKRALSILADIFIANIPVRQQNFRSKCIYVAVMLRRMMEALLNKDAMDDKDYVGNK 1976
            ++  E RALSIL D+F+AN+PVR  NFR KC+YVAVMLRRM+EA+LNKDAMDDKDYVGNK
Sbjct: 311  ASEKEGRALSILRDVFLANVPVRSNNFRPKCLYVAVMLRRMVEAILNKDAMDDKDYVGNK 370

Query: 1975 RLELSGQMLSLLFEDLFKTMNDEVRKTIDAILDKPSRSSRFDISQYI-VKDSITVGLERS 1799
            RLELSGQ++SLLFEDLFKT   EV+K ID +L KPSRSS  D SQ++  +++IT GLER+
Sbjct: 371  RLELSGQLISLLFEDLFKTTISEVQKMIDLVLSKPSRSSALDPSQFLRSRETITFGLERT 430

Query: 1798 LSTGNWDVKRFRMHRKGMTQVVARLSYIGTLGHMTKISPQFEKSRKVSGPRALQPSQWGM 1619
            LSTGN+D+KRF+MHRKGMTQV+ARLS+IGTLG+MTK+SPQFEKSRKVSGPRALQPSQWGM
Sbjct: 431  LSTGNFDIKRFKMHRKGMTQVLARLSFIGTLGYMTKVSPQFEKSRKVSGPRALQPSQWGM 490

Query: 1618 LCPCDTPEGEACGLVKNLALMTHVTTDEEEGPIVSLCYCLGVEDLELLSGEELHMPNSFL 1439
            LCPCDTPEGEACGLVKNLALMTHVTTDE+EGP++SLCYCLGVEDLELLSGEELH PNSFL
Sbjct: 491  LCPCDTPEGEACGLVKNLALMTHVTTDEDEGPLISLCYCLGVEDLELLSGEELHTPNSFL 550

Query: 1438 IILNGLILGKHRKPQRFANAMRKLRRAGKIGEFVSIYVNETQRCVYIASDGGRVCRPLVI 1259
            +ILNGLILGKHR+PQ FA AMRKLRRAGK+GEFVS++VNE QRCVYIASDGGRVCRPLVI
Sbjct: 551  VILNGLILGKHRRPQHFAVAMRKLRRAGKVGEFVSVFVNEKQRCVYIASDGGRVCRPLVI 610

Query: 1258 ADKGVSRIKEHHMKELKDGVRNFDSFLREGLIEYLDVNEENNALIALYESEATPETTHIE 1079
            ADKGVSRIKEHHMKEL DGVR FD FLR+GLIEYLDVNEENNALIALYE EATPETTHIE
Sbjct: 611  ADKGVSRIKEHHMKELLDGVRTFDDFLRDGLIEYLDVNEENNALIALYEGEATPETTHIE 670

Query: 1078 IEPLTILGVCAGLIPFPHHNQSPRNTYQCAMGKQAMGNIAYNELCRMDTLIYLLVYPQRP 899
            IEP TILGVCAGLIP+PHHNQSPRNTYQCAMGKQAMGNIAYN+LCRMDTL+YLLVYPQRP
Sbjct: 671  IEPFTILGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDTLLYLLVYPQRP 730

Query: 898  LLTTKTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMKKMSAI 719
            LLTT+TIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMK+ SA+
Sbjct: 731  LLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMKRYSAV 790

Query: 718  SQKYENGTSDRIIRPQRQGYDAERMQILDDDGLAAPGEIIRPHDIYINKESPKVIRGPVT 539
            +QKYE G SDRI+RPQR G  +ERMQILDDDG+A PGEIIRP+DIYINKES    RG   
Sbjct: 791  NQKYETGASDRILRPQRTGPGSERMQILDDDGIATPGEIIRPNDIYINKESSIHTRGSRV 850

Query: 538  SPAGLSDSDYKPSKQTYKGPEGETAVVDRVALCSDKNNNLCIKYMIRHTRRPEVGDKFSS 359
            S   L DS Y+P++QTYKGPEGE+ VVDRVALC+D+N+NL IK++IRHTRRPEVGDKFSS
Sbjct: 851  SSESLPDSAYRPARQTYKGPEGESCVVDRVALCTDRNSNLSIKFLIRHTRRPEVGDKFSS 910

Query: 358  RHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGSKAGVSSGRFH 179
            RHGQKGVCGTI+QQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLG KAGVS GRFH
Sbjct: 911  RHGQKGVCGTIIQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFH 970

Query: 178  YGSAFGEPSGHADTVEAISETLVNHGFSYNGKDFLYSGITGMPLQAYIYMGPIYYQKLK 2
            YGSAFGEPSGHAD VEAISETL+ HGFSYNGKDF+YSGITG PLQAYI+MGPIYYQKLK
Sbjct: 971  YGSAFGEPSGHADRVEAISETLIKHGFSYNGKDFIYSGITGCPLQAYIFMGPIYYQKLK 1029


>ref|XP_002525541.1| DNA-directed RNA polymerase III subunit, putative [Ricinus communis]
            gi|223535120|gb|EEF36800.1| DNA-directed RNA polymerase
            III subunit, putative [Ricinus communis]
          Length = 1139

 Score = 1644 bits (4257), Expect = 0.0
 Identities = 818/1019 (80%), Positives = 904/1019 (88%), Gaps = 3/1019 (0%)
 Frame = -1

Query: 3049 GNNDTN--ELGIDKSFLAAPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVSTEIKKIV 2876
            GNN+ N  E  IDK  L APIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFV+  IKKIV
Sbjct: 11   GNNEQNLVEQLIDKQKLTAPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVNIGIKKIV 70

Query: 2875 FANEWIRSKVDERVYLRYSDVRIGEPSMIIDGVTEKLTPHKCRLSDTTYAAPIFVNIEYR 2696
             AN+ I S VD  +YLR+ DVRIG PS I+DGV+E+L+PH CRLSD TYAAPI VN+EY 
Sbjct: 71   RANDRIVSTVDPGIYLRFKDVRIGTPSDIMDGVSEQLSPHMCRLSDKTYAAPILVNVEYI 130

Query: 2695 GQSQSTET-LKKKDVIIGRMPIMLRSKTCVLYKKDEEELASLGECPLDPGGYFIIKGTEK 2519
              S   +T ++K DV+IGRMPIMLRS++CVLY KDE ELA LGECPLDPGGYF+IKGTEK
Sbjct: 131  YGSHDQKTRVEKNDVVIGRMPIMLRSRSCVLYGKDEAELARLGECPLDPGGYFVIKGTEK 190

Query: 2518 VILIQEQLSKNRIIIDIDKKGCVQASVTSSTAMTKSKTVIKMEKEKIYLYLNQFKSKVPI 2339
            VILIQEQLSKNRIIID DKKG + ASVTSST  TKSKT+I+MEKEK+YL LNQF  K+PI
Sbjct: 191  VILIQEQLSKNRIIIDTDKKGNINASVTSSTEATKSKTIIQMEKEKMYLCLNQFVKKIPI 250

Query: 2338 MVVMKAMGMESDQEVVQMIGRDPRYSALLLPSIEECAKANVYTQQQALDYLEKQVKQLPY 2159
            MVV+KAMGMESDQEVVQM+GRDPRYSALLLPSIEECA  ++YTQQ+AL+YL+ +      
Sbjct: 251  MVVIKAMGMESDQEVVQMVGRDPRYSALLLPSIEECAGLSIYTQQKALEYLDGK------ 304

Query: 2158 PSAPVEKRALSILADIFIANIPVRQQNFRSKCIYVAVMLRRMMEALLNKDAMDDKDYVGN 1979
                 E RAL+IL D+F+AN+PV + NFR KC+YVAVMLRRMMEA+LNKDAMDDKDYVGN
Sbjct: 305  -----ENRALTILRDVFLANVPVHKNNFRPKCLYVAVMLRRMMEAMLNKDAMDDKDYVGN 359

Query: 1978 KRLELSGQMLSLLFEDLFKTMNDEVRKTIDAILDKPSRSSRFDISQYIVKDSITVGLERS 1799
            KRLELSGQ++SLLFEDLFKTM  EV++TID +L K +RSSRFD++QYIV+D+IT GLER+
Sbjct: 360  KRLELSGQLISLLFEDLFKTMITEVQRTIDTVLTKQNRSSRFDLAQYIVRDNITNGLERT 419

Query: 1798 LSTGNWDVKRFRMHRKGMTQVVARLSYIGTLGHMTKISPQFEKSRKVSGPRALQPSQWGM 1619
            LSTGN+DVKRF+MHRKGMTQV+ RLSYI +LG MT++SPQFEKSRKVSGPRALQPSQWGM
Sbjct: 420  LSTGNFDVKRFKMHRKGMTQVLVRLSYIASLGMMTRVSPQFEKSRKVSGPRALQPSQWGM 479

Query: 1618 LCPCDTPEGEACGLVKNLALMTHVTTDEEEGPIVSLCYCLGVEDLELLSGEELHMPNSFL 1439
            LCPCDTPEGEACGLVKNLALMTHVTTD+EEGP++SLCYCLGVEDLELLSGEELH PNSFL
Sbjct: 480  LCPCDTPEGEACGLVKNLALMTHVTTDDEEGPLISLCYCLGVEDLELLSGEELHTPNSFL 539

Query: 1438 IILNGLILGKHRKPQRFANAMRKLRRAGKIGEFVSIYVNETQRCVYIASDGGRVCRPLVI 1259
            +I NGLILGKHR+PQ F N+MRKLRRAGKIGEFVS++VNE QR VY+ASDGGRVCRPLVI
Sbjct: 540  VIFNGLILGKHRRPQYFVNSMRKLRRAGKIGEFVSVFVNEKQRAVYLASDGGRVCRPLVI 599

Query: 1258 ADKGVSRIKEHHMKELKDGVRNFDSFLREGLIEYLDVNEENNALIALYESEATPETTHIE 1079
            AD+GVSRIKEHHMKEL+DGVR FD FLR+GLIEYLDVNEENNAL+ALYE EATPETTHIE
Sbjct: 600  ADRGVSRIKEHHMKELRDGVRTFDDFLRDGLIEYLDVNEENNALVALYEGEATPETTHIE 659

Query: 1078 IEPLTILGVCAGLIPFPHHNQSPRNTYQCAMGKQAMGNIAYNELCRMDTLIYLLVYPQRP 899
            IEP TILGVCAGLIPFPHHNQSPRNTYQCAMGKQAMGNIAYN+L RMD+L+YLLVYPQRP
Sbjct: 660  IEPFTILGVCAGLIPFPHHNQSPRNTYQCAMGKQAMGNIAYNQLFRMDSLLYLLVYPQRP 719

Query: 898  LLTTKTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMKKMSAI 719
            LLTT+TIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNK+SLDRGFGRCIVMKK  AI
Sbjct: 720  LLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKASLDRGFGRCIVMKKYPAI 779

Query: 718  SQKYENGTSDRIIRPQRQGYDAERMQILDDDGLAAPGEIIRPHDIYINKESPKVIRGPVT 539
             QKYENG SDRI+RP R     ER ++LD DGLAAPGEII+P DIY+ KE P    GPV 
Sbjct: 780  RQKYENGASDRILRPDR---TVERERVLDYDGLAAPGEIIKPSDIYVKKECPIDTMGPVK 836

Query: 538  SPAGLSDSDYKPSKQTYKGPEGETAVVDRVALCSDKNNNLCIKYMIRHTRRPEVGDKFSS 359
            S A L +  Y+PS  +YKGPEGE+ V+DRVAL SD+NNNLCIK MIRHTRRPEVGDKFSS
Sbjct: 837  SSAALENIKYRPSPLSYKGPEGESPVIDRVALSSDRNNNLCIKVMIRHTRRPEVGDKFSS 896

Query: 358  RHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGSKAGVSSGRFH 179
            RHGQKGVCGTI+QQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLG KAGVS GRFH
Sbjct: 897  RHGQKGVCGTIIQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFH 956

Query: 178  YGSAFGEPSGHADTVEAISETLVNHGFSYNGKDFLYSGITGMPLQAYIYMGPIYYQKLK 2
            YGSAFGEPSGHADTVEAISETLVN GFSYNGKD +YSGITG PLQAYI+MGPIYYQKLK
Sbjct: 957  YGSAFGEPSGHADTVEAISETLVNRGFSYNGKDIIYSGITGCPLQAYIFMGPIYYQKLK 1015


>ref|XP_002321356.2| hypothetical protein POPTR_0015s005302g, partial [Populus
            trichocarpa] gi|550321670|gb|EEF05483.2| hypothetical
            protein POPTR_0015s005302g, partial [Populus trichocarpa]
          Length = 1034

 Score = 1643 bits (4255), Expect = 0.0
 Identities = 824/1017 (81%), Positives = 899/1017 (88%), Gaps = 10/1017 (0%)
 Frame = -1

Query: 3022 IDKS-FLAAPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVSTEIKKIVFANEWIRSKV 2846
            IDK    AAP+KSAVDKFQLLPEFLK RGLVKQHLDSFNYF++  IKKIV AN+ I S V
Sbjct: 19   IDKQKHAAAPVKSAVDKFQLLPEFLKGRGLVKQHLDSFNYFINIGIKKIVRANDRIVSTV 78

Query: 2845 DERVYLRYSDVRIGEPSMIIDGVTEKLTPHKCRLSDTTYAAPIFVNIEY-RGQSQSTETL 2669
            D  +YLR++DV+IG+PSM++D ++E++TPH CRLSDTTYAAPI VNIEY  G     E +
Sbjct: 79   DPSLYLRFTDVKIGKPSMVVDAISEQITPHMCRLSDTTYAAPILVNIEYISGSHGRKEKM 138

Query: 2668 KKKDVIIGRMPIMLRSKTCVLYKKDEEELASLGECPLDPGGYFIIKGTEKVILIQEQLSK 2489
             K DV+IGRMPIMLRS  CVLY K+E ELA LGECPLDPGGYF++KGTEKVILIQEQLSK
Sbjct: 139  IKNDVVIGRMPIMLRSCCCVLYGKNEAELARLGECPLDPGGYFVVKGTEKVILIQEQLSK 198

Query: 2488 NRIIIDIDKKGCVQASVTSSTAMTKSKTVIKMEKEKIYLYLNQFKSKVPIMVVMKAMGME 2309
            NRIIID DKKG + ASVTSST  TKSKTVI MEKEK+YL LNQF  K+PIMVVMKAMGME
Sbjct: 199  NRIIIDNDKKGNINASVTSSTEATKSKTVILMEKEKMYLCLNQFAKKIPIMVVMKAMGME 258

Query: 2308 SDQEVVQMIGRDPRYSALLLPSIEECAKANVYTQQQALDYLEKQVKQLPYPSAPVEK--R 2135
            SDQEVVQM+GRDPRYSALLLPSIEECA   VYTQQQAL+YLE  VK+  Y S+  EK  R
Sbjct: 259  SDQEVVQMVGRDPRYSALLLPSIEECASHGVYTQQQALEYLEAMVKRSTYSSSSTEKENR 318

Query: 2134 ALSILADIFIANIPVRQQNFRSKCIYVAVMLRRMMEALLNKDAMDDKDYVGNKRLELSGQ 1955
            AL+IL D+FIAN+PVR+ NFR KCIYVAVMLRRMMEALLNKDAMDDKDYVGNKRLELSGQ
Sbjct: 319  ALAILRDVFIANVPVRKNNFRPKCIYVAVMLRRMMEALLNKDAMDDKDYVGNKRLELSGQ 378

Query: 1954 MLSLLFEDLFKTMNDEVRKTIDAILDKPSRSSRFDISQYIVKDSITVGLERSLSTGNWDV 1775
            ++SLLFEDLFKTM  EV+KT D +L K +RSSRFD SQYIV+DSIT GLER+LSTGNWDV
Sbjct: 379  LISLLFEDLFKTMITEVQKTADTLLVKQNRSSRFDFSQYIVRDSITNGLERALSTGNWDV 438

Query: 1774 KRFRMHRKGMTQVVARLSYIGTLGHMTKISPQFEKSRKVSGPRALQPSQWGMLCPCDTPE 1595
            KRFRM+RKG+TQV+ RLSY+ +LGHMT+ISPQFEKSRKVSGPRALQPSQWGMLCPCDTPE
Sbjct: 439  KRFRMNRKGVTQVLVRLSYMASLGHMTRISPQFEKSRKVSGPRALQPSQWGMLCPCDTPE 498

Query: 1594 GEACGLVKNLALMTHVTTDEEEGPIVSLCYCLGVEDLELLSGEELHMPNSFLIILNGLIL 1415
            GEACGLVKNLALMTHVTTDEEE P++SLC CLGVEDLELLSGEELH PNSFL+I NGLIL
Sbjct: 499  GEACGLVKNLALMTHVTTDEEESPLISLCKCLGVEDLELLSGEELHTPNSFLVIFNGLIL 558

Query: 1414 GKHRKPQRFANAMRKLRRAGKIGEFVSIYVNETQRCVYIASDGGRVCRPLVIADKGVSRI 1235
            GKHR+PQ+FANAMRKLRRAGKIGEFVS++VNE QR VYIASDGGRVCRPLVIADKGVSRI
Sbjct: 559  GKHRRPQQFANAMRKLRRAGKIGEFVSVFVNEKQRAVYIASDGGRVCRPLVIADKGVSRI 618

Query: 1234 KEHHMKELKDGVRNFDSFLREGLIEYLDVNEENNALIALYESEATPETTHIEIEPLTILG 1055
            KEHHM+EL DG R FD FL EGLIEYLDVNEENNALIALYE EATPETTHIEIEP TILG
Sbjct: 619  KEHHMRELMDGARTFDDFLHEGLIEYLDVNEENNALIALYEWEATPETTHIEIEPFTILG 678

Query: 1054 VCAGLIPFPHHNQSPRNTYQCAMGKQAMGNIAYNELCRMDTLIYLLVYPQRPLLTTKTIE 875
            V AGLIP+PHHNQSPRNTYQCAMGKQAMGNIAYN+  RMD+L+YLLVYPQRPLLTT+TIE
Sbjct: 679  VVAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQASRMDSLLYLLVYPQRPLLTTRTIE 738

Query: 874  LVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMKKMSAISQKYENGT 695
            LVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNK+SLDRGFGRCIV+KK +  +QKYENG 
Sbjct: 739  LVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKASLDRGFGRCIVLKKYTCTNQKYENGA 798

Query: 694  SDRIIRPQRQGYDAERMQILDDDGLAAPGEIIRPHDIYINKESPKVIRGPVTSPAGLSDS 515
            SDRI+RP++   + ER ++LDDDGLAAPGEIIR  DIYINKESP   RGP+ S A L+D 
Sbjct: 799  SDRILRPRK---NEERERVLDDDGLAAPGEIIRHGDIYINKESPIETRGPLKSAAALADV 855

Query: 514  DYKPSKQTYKGPEGETAVVDRVALCSDKNNNLCIKYMIRHTRRPEVGDKFSSRHGQKGVC 335
             Y+P  Q +KG EGE+ VVDRVALCSDKNNNLCIKY IRHTRRPEVGDKFSSRHGQKGVC
Sbjct: 856  KYRPCAQIFKGTEGESCVVDRVALCSDKNNNLCIKYKIRHTRRPEVGDKFSSRHGQKGVC 915

Query: 334  GTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGSKAGVSSGRFHYGSAFGEP 155
            GTI+QQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLG KAGVS GRFHYGSAFGEP
Sbjct: 916  GTIIQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEP 975

Query: 154  SGHADTVEAIS------ETLVNHGFSYNGKDFLYSGITGMPLQAYIYMGPIYYQKLK 2
            SGHAD VEAI       ETLV HGFSYNGKDF+YSGITG PLQAYI+MGPIYYQKLK
Sbjct: 976  SGHADRVEAIRHFLSLIETLVKHGFSYNGKDFIYSGITGCPLQAYIFMGPIYYQKLK 1032


>ref|XP_002321360.2| hypothetical protein POPTR_0015s005302g, partial [Populus
            trichocarpa] gi|550321669|gb|EEF05487.2| hypothetical
            protein POPTR_0015s005302g, partial [Populus trichocarpa]
          Length = 1035

 Score = 1643 bits (4254), Expect = 0.0
 Identities = 824/1018 (80%), Positives = 899/1018 (88%), Gaps = 11/1018 (1%)
 Frame = -1

Query: 3022 IDKS-FLAAPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVSTEIKKIVFANEWIRSKV 2846
            IDK    AAP+KSAVDKFQLLPEFLK RGLVKQHLDSFNYF++  IKKIV AN+ I S V
Sbjct: 19   IDKQKHAAAPVKSAVDKFQLLPEFLKGRGLVKQHLDSFNYFINIGIKKIVRANDRIVSTV 78

Query: 2845 DERVYLRYSDVRIGEPSMIIDGVTEKLTPHKCRLSDTTYAAPIFVNIEY-RGQSQSTETL 2669
            D  +YLR++DV+IG+PSM++D ++E++TPH CRLSDTTYAAPI VNIEY  G     E +
Sbjct: 79   DPSLYLRFTDVKIGKPSMVVDAISEQITPHMCRLSDTTYAAPILVNIEYISGSHGRKEKM 138

Query: 2668 KKKDVIIGRMPIMLRSKTCVLYKKDEEELASLGECPLDPGGYFIIKGTEKVILIQEQLSK 2489
             K DV+IGRMPIMLRS  CVLY K+E ELA LGECPLDPGGYF++KGTEKVILIQEQLSK
Sbjct: 139  IKNDVVIGRMPIMLRSCCCVLYGKNEAELARLGECPLDPGGYFVVKGTEKVILIQEQLSK 198

Query: 2488 NRIIIDIDKKGCVQASVTSSTAMTKSKTVIKMEKEKIYLYLNQFKSKVPIMVVMKAMGME 2309
            NRIIID DKKG + ASVTSST  TKSKTVI MEKEK+YL LNQF  K+PIMVVMKAMGME
Sbjct: 199  NRIIIDNDKKGNINASVTSSTEATKSKTVILMEKEKMYLCLNQFAKKIPIMVVMKAMGME 258

Query: 2308 SDQEVVQMIGRDPRYSALLLPSIEECAKANVYTQQQALDYLEKQVKQLPYPSAPVEK--- 2138
            SDQEVVQM+GRDPRYSALLLPSIEECA   VYTQQQAL+YLE  VK+  Y S+  EK   
Sbjct: 259  SDQEVVQMVGRDPRYSALLLPSIEECASHGVYTQQQALEYLEAMVKRSTYSSSSTEKQEN 318

Query: 2137 RALSILADIFIANIPVRQQNFRSKCIYVAVMLRRMMEALLNKDAMDDKDYVGNKRLELSG 1958
            RAL+IL D+FIAN+PVR+ NFR KCIYVAVMLRRMMEALLNKDAMDDKDYVGNKRLELSG
Sbjct: 319  RALAILRDVFIANVPVRKNNFRPKCIYVAVMLRRMMEALLNKDAMDDKDYVGNKRLELSG 378

Query: 1957 QMLSLLFEDLFKTMNDEVRKTIDAILDKPSRSSRFDISQYIVKDSITVGLERSLSTGNWD 1778
            Q++SLLFEDLFKTM  EV+KT D +L K +RSSRFD SQYIV+DSIT GLER+LSTGNWD
Sbjct: 379  QLISLLFEDLFKTMITEVQKTADTLLVKQNRSSRFDFSQYIVRDSITNGLERALSTGNWD 438

Query: 1777 VKRFRMHRKGMTQVVARLSYIGTLGHMTKISPQFEKSRKVSGPRALQPSQWGMLCPCDTP 1598
            VKRFRM+RKG+TQV+ RLSY+ +LGHMT+ISPQFEKSRKVSGPRALQPSQWGMLCPCDTP
Sbjct: 439  VKRFRMNRKGVTQVLVRLSYMASLGHMTRISPQFEKSRKVSGPRALQPSQWGMLCPCDTP 498

Query: 1597 EGEACGLVKNLALMTHVTTDEEEGPIVSLCYCLGVEDLELLSGEELHMPNSFLIILNGLI 1418
            EGEACGLVKNLALMTHVTTDEEE P++SLC CLGVEDLELLSGEELH PNSFL+I NGLI
Sbjct: 499  EGEACGLVKNLALMTHVTTDEEESPLISLCKCLGVEDLELLSGEELHTPNSFLVIFNGLI 558

Query: 1417 LGKHRKPQRFANAMRKLRRAGKIGEFVSIYVNETQRCVYIASDGGRVCRPLVIADKGVSR 1238
            LGKHR+PQ+FANAMRKLRRAGKIGEFVS++VNE QR VYIASDGGRVCRPLVIADKGVSR
Sbjct: 559  LGKHRRPQQFANAMRKLRRAGKIGEFVSVFVNEKQRAVYIASDGGRVCRPLVIADKGVSR 618

Query: 1237 IKEHHMKELKDGVRNFDSFLREGLIEYLDVNEENNALIALYESEATPETTHIEIEPLTIL 1058
            IKEHHM+EL DG R FD FL EGLIEYLDVNEENNALIALYE EATPETTHIEIEP TIL
Sbjct: 619  IKEHHMRELMDGARTFDDFLHEGLIEYLDVNEENNALIALYEWEATPETTHIEIEPFTIL 678

Query: 1057 GVCAGLIPFPHHNQSPRNTYQCAMGKQAMGNIAYNELCRMDTLIYLLVYPQRPLLTTKTI 878
            GV AGLIP+PHHNQSPRNTYQCAMGKQAMGNIAYN+  RMD+L+YLLVYPQRPLLTT+TI
Sbjct: 679  GVVAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQASRMDSLLYLLVYPQRPLLTTRTI 738

Query: 877  ELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMKKMSAISQKYENG 698
            ELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNK+SLDRGFGRCIV+KK +  +QKYENG
Sbjct: 739  ELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKASLDRGFGRCIVLKKYTCTNQKYENG 798

Query: 697  TSDRIIRPQRQGYDAERMQILDDDGLAAPGEIIRPHDIYINKESPKVIRGPVTSPAGLSD 518
             SDRI+RP++   + ER ++LDDDGLAAPGEIIR  DIYINKESP   RGP+ S A L+D
Sbjct: 799  ASDRILRPRK---NEERERVLDDDGLAAPGEIIRHGDIYINKESPIETRGPLKSAAALAD 855

Query: 517  SDYKPSKQTYKGPEGETAVVDRVALCSDKNNNLCIKYMIRHTRRPEVGDKFSSRHGQKGV 338
              Y+P  Q +KG EGE+ VVDRVALCSDKNNNLCIKY IRHTRRPEVGDKFSSRHGQKGV
Sbjct: 856  VKYRPCAQIFKGTEGESCVVDRVALCSDKNNNLCIKYKIRHTRRPEVGDKFSSRHGQKGV 915

Query: 337  CGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGSKAGVSSGRFHYGSAFGE 158
            CGTI+QQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLG KAGVS GRFHYGSAFGE
Sbjct: 916  CGTIIQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGE 975

Query: 157  PSGHADTVEAIS------ETLVNHGFSYNGKDFLYSGITGMPLQAYIYMGPIYYQKLK 2
            PSGHAD VEAI       ETLV HGFSYNGKDF+YSGITG PLQAYI+MGPIYYQKLK
Sbjct: 976  PSGHADRVEAIRHFLSLIETLVKHGFSYNGKDFIYSGITGCPLQAYIFMGPIYYQKLK 1033


>gb|EOY19612.1| DNA-directed RNA polymerase isoform 4 [Theobroma cacao]
          Length = 1034

 Score = 1639 bits (4243), Expect = 0.0
 Identities = 810/997 (81%), Positives = 897/997 (89%), Gaps = 4/997 (0%)
 Frame = -1

Query: 3046 NNDTNELGIDKSFLAAPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVSTEIKKIVFAN 2867
            N++ +E+ +DK  LAAPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFV+T IKKIV AN
Sbjct: 16   NSNVSEMPVDKQKLAAPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIKKIVRAN 75

Query: 2866 EWIRSKVDERVYLRYSDVRIGEPSMIIDGVTEKLTPHKCRLSDTTYAAPIFVNIEYRGQS 2687
            + I S VD  +YLR+ DVRIGEPSM I+ V+EK+ PH CRLSD TYAAPIFVNIEY   S
Sbjct: 76   DRIVSGVDPSIYLRFKDVRIGEPSMTINAVSEKINPHTCRLSDMTYAAPIFVNIEYIQGS 135

Query: 2686 QSTET-LKKKDVIIGRMPIMLRSKTCVLYKKDEEELASLGECPLDPGGYFIIKGTEKVIL 2510
               +T L+K D++IGRMPIMLRS  CVLY KDE ELA LGECPLDPGGYF+IKG EKVIL
Sbjct: 136  HGQKTRLEKNDLVIGRMPIMLRSCCCVLYGKDEAELARLGECPLDPGGYFVIKGAEKVIL 195

Query: 2509 IQEQLSKNRIIIDIDKKGCVQASVTSSTAMTKSKTVIKMEKEKIYLYLNQFKSKVPIMVV 2330
            IQEQLSKNRIIID DKKG + ASVTSS+  TKSKTVI+MEKEKIYL LNQF  K+PIMVV
Sbjct: 196  IQEQLSKNRIIIDADKKGNINASVTSSSEATKSKTVIQMEKEKIYLLLNQFVKKIPIMVV 255

Query: 2329 MKAMGMESDQEVVQMIGRDPRYSALLLPSIEECAKANVYTQQQALDYLEKQVKQLPY--P 2156
            MKAMGMESDQEVVQM+GRDP Y+A+LLPSIEECA   +YTQ+QAL+YLE +VK++ Y  P
Sbjct: 256  MKAMGMESDQEVVQMVGRDPHYNAVLLPSIEECAGVGIYTQEQALEYLETKVKRVMYTGP 315

Query: 2155 SAPVEKRALSILADIFIANIPVRQQNFRSKCIYVAVMLRRMMEALLNKDAMDDKDYVGNK 1976
            ++  E RALSIL D+F+AN+PVR  NFR KC+YVAVMLRRM+EA+LNKDAMDDKDYVGNK
Sbjct: 316  ASEKEGRALSILRDVFLANVPVRSNNFRPKCLYVAVMLRRMVEAILNKDAMDDKDYVGNK 375

Query: 1975 RLELSGQMLSLLFEDLFKTMNDEVRKTIDAILDKPSRSSRFDISQYI-VKDSITVGLERS 1799
            RLELSGQ++SLLFEDLFKT   EV+K ID +L KPSRSS  D SQ++  +++IT GLER+
Sbjct: 376  RLELSGQLISLLFEDLFKTTISEVQKMIDLVLSKPSRSSALDPSQFLRSRETITFGLERT 435

Query: 1798 LSTGNWDVKRFRMHRKGMTQVVARLSYIGTLGHMTKISPQFEKSRKVSGPRALQPSQWGM 1619
            LSTGN+D+KRF+MHRKGMTQV+ARLS+IGTLG+MTK+SPQFEKSRKVSGPRALQPSQWGM
Sbjct: 436  LSTGNFDIKRFKMHRKGMTQVLARLSFIGTLGYMTKVSPQFEKSRKVSGPRALQPSQWGM 495

Query: 1618 LCPCDTPEGEACGLVKNLALMTHVTTDEEEGPIVSLCYCLGVEDLELLSGEELHMPNSFL 1439
            LCPCDTPEGEACGLVKNLALMTHVTTDE+EGP++SLCYCLGVEDLELLSGEELH PNSFL
Sbjct: 496  LCPCDTPEGEACGLVKNLALMTHVTTDEDEGPLISLCYCLGVEDLELLSGEELHTPNSFL 555

Query: 1438 IILNGLILGKHRKPQRFANAMRKLRRAGKIGEFVSIYVNETQRCVYIASDGGRVCRPLVI 1259
            +ILNGLILGKHR+PQ FA AMRKLRRAGK+GEFVS++VNE QRCVYIASDGGRVCRPLVI
Sbjct: 556  VILNGLILGKHRRPQHFAVAMRKLRRAGKVGEFVSVFVNEKQRCVYIASDGGRVCRPLVI 615

Query: 1258 ADKGVSRIKEHHMKELKDGVRNFDSFLREGLIEYLDVNEENNALIALYESEATPETTHIE 1079
            ADKGVSRIKEHHMKEL DGVR FD FLR+GLIEYLDVNEENNALIALYE EATPETTHIE
Sbjct: 616  ADKGVSRIKEHHMKELLDGVRTFDDFLRDGLIEYLDVNEENNALIALYEGEATPETTHIE 675

Query: 1078 IEPLTILGVCAGLIPFPHHNQSPRNTYQCAMGKQAMGNIAYNELCRMDTLIYLLVYPQRP 899
            IEP TILGVCAGLIP+PHHNQSPRNTYQCAMGKQAMGNIAYN+LCRMDTL+YLLVYPQRP
Sbjct: 676  IEPFTILGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDTLLYLLVYPQRP 735

Query: 898  LLTTKTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMKKMSAI 719
            LLTT+TIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMK+ SA+
Sbjct: 736  LLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMKRYSAV 795

Query: 718  SQKYENGTSDRIIRPQRQGYDAERMQILDDDGLAAPGEIIRPHDIYINKESPKVIRGPVT 539
            +QKYE G SDRI+RPQR G  +ERMQILDDDG+A PGEIIRP+DIYINKES    RG   
Sbjct: 796  NQKYETGASDRILRPQRTGPGSERMQILDDDGIATPGEIIRPNDIYINKESSIHTRGSRV 855

Query: 538  SPAGLSDSDYKPSKQTYKGPEGETAVVDRVALCSDKNNNLCIKYMIRHTRRPEVGDKFSS 359
            S   L DS Y+P++QTYKGPEGE+ VVDRVALC+D+N+NL IK++IRHTRRPEVGDKFSS
Sbjct: 856  SSESLPDSAYRPARQTYKGPEGESCVVDRVALCTDRNSNLSIKFLIRHTRRPEVGDKFSS 915

Query: 358  RHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGSKAGVSSGRFH 179
            RHGQKGVCGTI+QQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLG KAGVS GRFH
Sbjct: 916  RHGQKGVCGTIIQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFH 975

Query: 178  YGSAFGEPSGHADTVEAISETLVNHGFSYNGKDFLYS 68
            YGSAFGEPSGHAD VEAISETL+ HGFSYNGKDF+YS
Sbjct: 976  YGSAFGEPSGHADRVEAISETLIKHGFSYNGKDFIYS 1012


>gb|EOY19610.1| DNA-directed RNA polymerase isoform 2 [Theobroma cacao]
          Length = 1011

 Score = 1637 bits (4239), Expect = 0.0
 Identities = 809/996 (81%), Positives = 896/996 (89%), Gaps = 4/996 (0%)
 Frame = -1

Query: 3046 NNDTNELGIDKSFLAAPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVSTEIKKIVFAN 2867
            N++ +E+ +DK  LAAPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFV+T IKKIV AN
Sbjct: 16   NSNVSEMPVDKQKLAAPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIKKIVRAN 75

Query: 2866 EWIRSKVDERVYLRYSDVRIGEPSMIIDGVTEKLTPHKCRLSDTTYAAPIFVNIEYRGQS 2687
            + I S VD  +YLR+ DVRIGEPSM I+ V+EK+ PH CRLSD TYAAPIFVNIEY   S
Sbjct: 76   DRIVSGVDPSIYLRFKDVRIGEPSMTINAVSEKINPHTCRLSDMTYAAPIFVNIEYIQGS 135

Query: 2686 QSTET-LKKKDVIIGRMPIMLRSKTCVLYKKDEEELASLGECPLDPGGYFIIKGTEKVIL 2510
               +T L+K D++IGRMPIMLRS  CVLY KDE ELA LGECPLDPGGYF+IKG EKVIL
Sbjct: 136  HGQKTRLEKNDLVIGRMPIMLRSCCCVLYGKDEAELARLGECPLDPGGYFVIKGAEKVIL 195

Query: 2509 IQEQLSKNRIIIDIDKKGCVQASVTSSTAMTKSKTVIKMEKEKIYLYLNQFKSKVPIMVV 2330
            IQEQLSKNRIIID DKKG + ASVTSS+  TKSKTVI+MEKEKIYL LNQF  K+PIMVV
Sbjct: 196  IQEQLSKNRIIIDADKKGNINASVTSSSEATKSKTVIQMEKEKIYLLLNQFVKKIPIMVV 255

Query: 2329 MKAMGMESDQEVVQMIGRDPRYSALLLPSIEECAKANVYTQQQALDYLEKQVKQLPY--P 2156
            MKAMGMESDQEVVQM+GRDP Y+A+LLPSIEECA   +YTQ+QAL+YLE +VK++ Y  P
Sbjct: 256  MKAMGMESDQEVVQMVGRDPHYNAVLLPSIEECAGVGIYTQEQALEYLETKVKRVMYTGP 315

Query: 2155 SAPVEKRALSILADIFIANIPVRQQNFRSKCIYVAVMLRRMMEALLNKDAMDDKDYVGNK 1976
            ++  E RALSIL D+F+AN+PVR  NFR KC+YVAVMLRRM+EA+LNKDAMDDKDYVGNK
Sbjct: 316  ASEKEGRALSILRDVFLANVPVRSNNFRPKCLYVAVMLRRMVEAILNKDAMDDKDYVGNK 375

Query: 1975 RLELSGQMLSLLFEDLFKTMNDEVRKTIDAILDKPSRSSRFDISQYI-VKDSITVGLERS 1799
            RLELSGQ++SLLFEDLFKT   EV+K ID +L KPSRSS  D SQ++  +++IT GLER+
Sbjct: 376  RLELSGQLISLLFEDLFKTTISEVQKMIDLVLSKPSRSSALDPSQFLRSRETITFGLERT 435

Query: 1798 LSTGNWDVKRFRMHRKGMTQVVARLSYIGTLGHMTKISPQFEKSRKVSGPRALQPSQWGM 1619
            LSTGN+D+KRF+MHRKGMTQV+ARLS+IGTLG+MTK+SPQFEKSRKVSGPRALQPSQWGM
Sbjct: 436  LSTGNFDIKRFKMHRKGMTQVLARLSFIGTLGYMTKVSPQFEKSRKVSGPRALQPSQWGM 495

Query: 1618 LCPCDTPEGEACGLVKNLALMTHVTTDEEEGPIVSLCYCLGVEDLELLSGEELHMPNSFL 1439
            LCPCDTPEGEACGLVKNLALMTHVTTDE+EGP++SLCYCLGVEDLELLSGEELH PNSFL
Sbjct: 496  LCPCDTPEGEACGLVKNLALMTHVTTDEDEGPLISLCYCLGVEDLELLSGEELHTPNSFL 555

Query: 1438 IILNGLILGKHRKPQRFANAMRKLRRAGKIGEFVSIYVNETQRCVYIASDGGRVCRPLVI 1259
            +ILNGLILGKHR+PQ FA AMRKLRRAGK+GEFVS++VNE QRCVYIASDGGRVCRPLVI
Sbjct: 556  VILNGLILGKHRRPQHFAVAMRKLRRAGKVGEFVSVFVNEKQRCVYIASDGGRVCRPLVI 615

Query: 1258 ADKGVSRIKEHHMKELKDGVRNFDSFLREGLIEYLDVNEENNALIALYESEATPETTHIE 1079
            ADKGVSRIKEHHMKEL DGVR FD FLR+GLIEYLDVNEENNALIALYE EATPETTHIE
Sbjct: 616  ADKGVSRIKEHHMKELLDGVRTFDDFLRDGLIEYLDVNEENNALIALYEGEATPETTHIE 675

Query: 1078 IEPLTILGVCAGLIPFPHHNQSPRNTYQCAMGKQAMGNIAYNELCRMDTLIYLLVYPQRP 899
            IEP TILGVCAGLIP+PHHNQSPRNTYQCAMGKQAMGNIAYN+LCRMDTL+YLLVYPQRP
Sbjct: 676  IEPFTILGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDTLLYLLVYPQRP 735

Query: 898  LLTTKTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMKKMSAI 719
            LLTT+TIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMK+ SA+
Sbjct: 736  LLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMKRYSAV 795

Query: 718  SQKYENGTSDRIIRPQRQGYDAERMQILDDDGLAAPGEIIRPHDIYINKESPKVIRGPVT 539
            +QKYE G SDRI+RPQR G  +ERMQILDDDG+A PGEIIRP+DIYINKES    RG   
Sbjct: 796  NQKYETGASDRILRPQRTGPGSERMQILDDDGIATPGEIIRPNDIYINKESSIHTRGSRV 855

Query: 538  SPAGLSDSDYKPSKQTYKGPEGETAVVDRVALCSDKNNNLCIKYMIRHTRRPEVGDKFSS 359
            S   L DS Y+P++QTYKGPEGE+ VVDRVALC+D+N+NL IK++IRHTRRPEVGDKFSS
Sbjct: 856  SSESLPDSAYRPARQTYKGPEGESCVVDRVALCTDRNSNLSIKFLIRHTRRPEVGDKFSS 915

Query: 358  RHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGSKAGVSSGRFH 179
            RHGQKGVCGTI+QQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLG KAGVS GRFH
Sbjct: 916  RHGQKGVCGTIIQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFH 975

Query: 178  YGSAFGEPSGHADTVEAISETLVNHGFSYNGKDFLY 71
            YGSAFGEPSGHAD VEAISETL+ HGFSYNGKDF+Y
Sbjct: 976  YGSAFGEPSGHADRVEAISETLIKHGFSYNGKDFIY 1011


>gb|EOY19614.1| DNA-directed RNA polymerase isoform 6 [Theobroma cacao]
          Length = 1034

 Score = 1624 bits (4205), Expect = 0.0
 Identities = 809/1019 (79%), Positives = 896/1019 (87%), Gaps = 27/1019 (2%)
 Frame = -1

Query: 3046 NNDTNELGIDKSFLAAPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVSTEIKKIVFAN 2867
            N++ +E+ +DK  LAAPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFV+T IKKIV AN
Sbjct: 16   NSNVSEMPVDKQKLAAPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIKKIVRAN 75

Query: 2866 EWIRSKVDERVYLRYSDVRIGEPSMIIDGVTEKLTPHKCRLSDTTYAAPIFVNIEYRGQS 2687
            + I S VD  +YLR+ DVRIGEPSM I+ V+EK+ PH CRLSD TYAAPIFVNIEY   S
Sbjct: 76   DRIVSGVDPSIYLRFKDVRIGEPSMTINAVSEKINPHTCRLSDMTYAAPIFVNIEYIQGS 135

Query: 2686 QSTET-LKKKDVIIGRMPIMLRSKTCVLYKKDEEELASLGECPLDPGGYFIIKGTEKVIL 2510
               +T L+K D++IGRMPIMLRS  CVLY KDE ELA LGECPLDPGGYF+IKG EKVIL
Sbjct: 136  HGQKTRLEKNDLVIGRMPIMLRSCCCVLYGKDEAELARLGECPLDPGGYFVIKGAEKVIL 195

Query: 2509 IQEQLSKNRIIIDIDKKGCVQASVTSSTAMTKSKTVIKMEKEKIYLYLNQFKSKVPIMVV 2330
            IQEQLSKNRIIID DKKG + ASVTSS+  TKSKTVI+MEKEKIYL LNQF  K+PIMVV
Sbjct: 196  IQEQLSKNRIIIDADKKGNINASVTSSSEATKSKTVIQMEKEKIYLLLNQFVKKIPIMVV 255

Query: 2329 MKAMGMESDQEVVQMIGRDPRYSALLLPSIEECAKANVYTQQQALDYLEKQVKQLPY--P 2156
            MKAMGMESDQEVVQM+GRDP Y+A+LLPSIEECA   +YTQ+QAL+YLE +VK++ Y  P
Sbjct: 256  MKAMGMESDQEVVQMVGRDPHYNAVLLPSIEECAGVGIYTQEQALEYLETKVKRVMYTGP 315

Query: 2155 SAPVEKRALSILADIFIANIPVRQQNFRSKCIYVAVMLRRMMEALLNKDAMDDKDYVGNK 1976
            ++  E RALSIL D+F+AN+PVR  NFR KC+YVAVMLRRM+EA+LNKDAMDDKDYVGNK
Sbjct: 316  ASEKEGRALSILRDVFLANVPVRSNNFRPKCLYVAVMLRRMVEAILNKDAMDDKDYVGNK 375

Query: 1975 RLELSGQMLSLLFEDLFKTMNDEVRKTIDAILDKPSRSSRFDISQYI-VKDSITVGLERS 1799
            RLELSGQ++SLLFEDLFKT   EV+K ID +L KPSRSS  D SQ++  +++IT GLER+
Sbjct: 376  RLELSGQLISLLFEDLFKTTISEVQKMIDLVLSKPSRSSALDPSQFLRSRETITFGLERT 435

Query: 1798 LSTGNWDVKRFRMHRKGMTQVVARLSYIGTLGHMTKISPQFEKSRKVSGPRALQPSQWGM 1619
            LSTGN+D+KRF+MHRKGMTQV+ARLS+IGTLG+MTK+SPQFEKSRKVSGPRALQPSQWGM
Sbjct: 436  LSTGNFDIKRFKMHRKGMTQVLARLSFIGTLGYMTKVSPQFEKSRKVSGPRALQPSQWGM 495

Query: 1618 LCPCDTPEGEACGLVKNLALMTHVTTDEEEGPIVSLCYCLGVEDLELLSGEELHMPNSFL 1439
            LCPCDTPEGEACGLVKNLALMTHVTTDE+EGP++SLCYCLGVEDLELLSGEELH PNSFL
Sbjct: 496  LCPCDTPEGEACGLVKNLALMTHVTTDEDEGPLISLCYCLGVEDLELLSGEELHTPNSFL 555

Query: 1438 IILNGLILGKHRKPQRFANAMRKLRRAGKIGEFVSIYVNETQRCVYIASDGGRVCRPLVI 1259
            +ILNGLILGKHR+PQ FA AMRKLRRAGK+GEFVS++VNE QRCVYIASDGGRVCRPLVI
Sbjct: 556  VILNGLILGKHRRPQHFAVAMRKLRRAGKVGEFVSVFVNEKQRCVYIASDGGRVCRPLVI 615

Query: 1258 ADKGVSRIKEHHMKELKDGVRNFDSFLREGLIEYLDVNEENNALIALYESEATPETTHIE 1079
            ADKGVSRIKEHHMKEL DGVR FD FLR+GLIEYLDVNEENNALIALYE EATPETTHIE
Sbjct: 616  ADKGVSRIKEHHMKELLDGVRTFDDFLRDGLIEYLDVNEENNALIALYEGEATPETTHIE 675

Query: 1078 IEPLTILGVCAGLIPFPHHNQSPRNTYQCAMGKQAMGNIAYNELCRMDTLIYLLVYPQRP 899
            IEP TILGVCAGLIP+PHHNQSPRNTYQCAMGKQAMGNIAYN+LCRMDTL+YLLVYPQRP
Sbjct: 676  IEPFTILGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDTLLYLLVYPQRP 735

Query: 898  LLTTKTIEL-----------------------VGYDKLGAGQNATVAVMSYSGYDIEDAI 788
            LLTT+TIEL                       VGYDKLGAGQNATVAVMSYSGYDIEDAI
Sbjct: 736  LLTTRTIELVSGLYVVDYSTPFCPVNCLLCFQVGYDKLGAGQNATVAVMSYSGYDIEDAI 795

Query: 787  VMNKSSLDRGFGRCIVMKKMSAISQKYENGTSDRIIRPQRQGYDAERMQILDDDGLAAPG 608
            VMNKSSLDRGFGRCIVMK+ SA++QKYE G SDRI+RPQR G  +ERMQILDDDG+A PG
Sbjct: 796  VMNKSSLDRGFGRCIVMKRYSAVNQKYETGASDRILRPQRTGPGSERMQILDDDGIATPG 855

Query: 607  EIIRPHDIYINKESPKVIRGPVTSPAGLSDSDYKPSKQTYKGPEGETAVVDRVALCSDKN 428
            EIIRP+DIYINKES    RG   S   L DS Y+P++QTYKGPEGE+ VVDRVALC+D+N
Sbjct: 856  EIIRPNDIYINKESSIHTRGSRVSSESLPDSAYRPARQTYKGPEGESCVVDRVALCTDRN 915

Query: 427  NNLCIKYMIRHTRRPEVGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPS 248
            +NL IK++IRHTRRPEVGDKFSSRHGQKGVCGTI+QQEDFPFSERGICPDLIMNPHGFPS
Sbjct: 916  SNLSIKFLIRHTRRPEVGDKFSSRHGQKGVCGTIIQQEDFPFSERGICPDLIMNPHGFPS 975

Query: 247  RMTVGKMIELLGSKAGVSSGRFHYGSAFGEPSGHADTVEAISETLVNHGFSYNGKDFLY 71
            RMTVGKMIELLG KAGVS GRFHYGSAFGEPSGHAD VEAISETL+ HGFSYNGKDF+Y
Sbjct: 976  RMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADRVEAISETLIKHGFSYNGKDFIY 1034


>gb|EOY19613.1| DNA-directed RNA polymerase isoform 5 [Theobroma cacao]
          Length = 1006

 Score = 1623 bits (4202), Expect = 0.0
 Identities = 804/996 (80%), Positives = 891/996 (89%), Gaps = 4/996 (0%)
 Frame = -1

Query: 3046 NNDTNELGIDKSFLAAPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVSTEIKKIVFAN 2867
            N++ +E+ +DK  LAAPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFV+T IKKIV AN
Sbjct: 16   NSNVSEMPVDKQKLAAPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIKKIVRAN 75

Query: 2866 EWIRSKVDERVYLRYSDVRIGEPSMIIDGVTEKLTPHKCRLSDTTYAAPIFVNIEYRGQS 2687
            + I S VD  +YLR+ DVRIGEPSM I+ V+EK+ PH CRLSD TYAAPIFVNIEY   S
Sbjct: 76   DRIVSGVDPSIYLRFKDVRIGEPSMTINAVSEKINPHTCRLSDMTYAAPIFVNIEYIQGS 135

Query: 2686 QSTET-LKKKDVIIGRMPIMLRSKTCVLYKKDEEELASLGECPLDPGGYFIIKGTEKVIL 2510
               +T L+K D++IGRMPIMLRS  CVLY KDE ELA LGECPLDPGGYF+IKG EK   
Sbjct: 136  HGQKTRLEKNDLVIGRMPIMLRSCCCVLYGKDEAELARLGECPLDPGGYFVIKGAEK--- 192

Query: 2509 IQEQLSKNRIIIDIDKKGCVQASVTSSTAMTKSKTVIKMEKEKIYLYLNQFKSKVPIMVV 2330
              EQLSKNRIIID DKKG + ASVTSS+  TKSKTVI+MEKEKIYL LNQF  K+PIMVV
Sbjct: 193  --EQLSKNRIIIDADKKGNINASVTSSSEATKSKTVIQMEKEKIYLLLNQFVKKIPIMVV 250

Query: 2329 MKAMGMESDQEVVQMIGRDPRYSALLLPSIEECAKANVYTQQQALDYLEKQVKQLPY--P 2156
            MKAMGMESDQEVVQM+GRDP Y+A+LLPSIEECA   +YTQ+QAL+YLE +VK++ Y  P
Sbjct: 251  MKAMGMESDQEVVQMVGRDPHYNAVLLPSIEECAGVGIYTQEQALEYLETKVKRVMYTGP 310

Query: 2155 SAPVEKRALSILADIFIANIPVRQQNFRSKCIYVAVMLRRMMEALLNKDAMDDKDYVGNK 1976
            ++  E RALSIL D+F+AN+PVR  NFR KC+YVAVMLRRM+EA+LNKDAMDDKDYVGNK
Sbjct: 311  ASEKEGRALSILRDVFLANVPVRSNNFRPKCLYVAVMLRRMVEAILNKDAMDDKDYVGNK 370

Query: 1975 RLELSGQMLSLLFEDLFKTMNDEVRKTIDAILDKPSRSSRFDISQYI-VKDSITVGLERS 1799
            RLELSGQ++SLLFEDLFKT   EV+K ID +L KPSRSS  D SQ++  +++IT GLER+
Sbjct: 371  RLELSGQLISLLFEDLFKTTISEVQKMIDLVLSKPSRSSALDPSQFLRSRETITFGLERT 430

Query: 1798 LSTGNWDVKRFRMHRKGMTQVVARLSYIGTLGHMTKISPQFEKSRKVSGPRALQPSQWGM 1619
            LSTGN+D+KRF+MHRKGMTQV+ARLS+IGTLG+MTK+SPQFEKSRKVSGPRALQPSQWGM
Sbjct: 431  LSTGNFDIKRFKMHRKGMTQVLARLSFIGTLGYMTKVSPQFEKSRKVSGPRALQPSQWGM 490

Query: 1618 LCPCDTPEGEACGLVKNLALMTHVTTDEEEGPIVSLCYCLGVEDLELLSGEELHMPNSFL 1439
            LCPCDTPEGEACGLVKNLALMTHVTTDE+EGP++SLCYCLGVEDLELLSGEELH PNSFL
Sbjct: 491  LCPCDTPEGEACGLVKNLALMTHVTTDEDEGPLISLCYCLGVEDLELLSGEELHTPNSFL 550

Query: 1438 IILNGLILGKHRKPQRFANAMRKLRRAGKIGEFVSIYVNETQRCVYIASDGGRVCRPLVI 1259
            +ILNGLILGKHR+PQ FA AMRKLRRAGK+GEFVS++VNE QRCVYIASDGGRVCRPLVI
Sbjct: 551  VILNGLILGKHRRPQHFAVAMRKLRRAGKVGEFVSVFVNEKQRCVYIASDGGRVCRPLVI 610

Query: 1258 ADKGVSRIKEHHMKELKDGVRNFDSFLREGLIEYLDVNEENNALIALYESEATPETTHIE 1079
            ADKGVSRIKEHHMKEL DGVR FD FLR+GLIEYLDVNEENNALIALYE EATPETTHIE
Sbjct: 611  ADKGVSRIKEHHMKELLDGVRTFDDFLRDGLIEYLDVNEENNALIALYEGEATPETTHIE 670

Query: 1078 IEPLTILGVCAGLIPFPHHNQSPRNTYQCAMGKQAMGNIAYNELCRMDTLIYLLVYPQRP 899
            IEP TILGVCAGLIP+PHHNQSPRNTYQCAMGKQAMGNIAYN+LCRMDTL+YLLVYPQRP
Sbjct: 671  IEPFTILGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLCRMDTLLYLLVYPQRP 730

Query: 898  LLTTKTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMKKMSAI 719
            LLTT+TIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMK+ SA+
Sbjct: 731  LLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMKRYSAV 790

Query: 718  SQKYENGTSDRIIRPQRQGYDAERMQILDDDGLAAPGEIIRPHDIYINKESPKVIRGPVT 539
            +QKYE G SDRI+RPQR G  +ERMQILDDDG+A PGEIIRP+DIYINKES    RG   
Sbjct: 791  NQKYETGASDRILRPQRTGPGSERMQILDDDGIATPGEIIRPNDIYINKESSIHTRGSRV 850

Query: 538  SPAGLSDSDYKPSKQTYKGPEGETAVVDRVALCSDKNNNLCIKYMIRHTRRPEVGDKFSS 359
            S   L DS Y+P++QTYKGPEGE+ VVDRVALC+D+N+NL IK++IRHTRRPEVGDKFSS
Sbjct: 851  SSESLPDSAYRPARQTYKGPEGESCVVDRVALCTDRNSNLSIKFLIRHTRRPEVGDKFSS 910

Query: 358  RHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGSKAGVSSGRFH 179
            RHGQKGVCGTI+QQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLG KAGVS GRFH
Sbjct: 911  RHGQKGVCGTIIQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFH 970

Query: 178  YGSAFGEPSGHADTVEAISETLVNHGFSYNGKDFLY 71
            YGSAFGEPSGHAD VEAISETL+ HGFSYNGKDF+Y
Sbjct: 971  YGSAFGEPSGHADRVEAISETLIKHGFSYNGKDFIY 1006


>ref|XP_004141655.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like [Cucumis
            sativus]
          Length = 1158

 Score = 1622 bits (4199), Expect = 0.0
 Identities = 806/1020 (79%), Positives = 899/1020 (88%), Gaps = 5/1020 (0%)
 Frame = -1

Query: 3046 NNDTNELGIDKSFLAAPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVSTEIKKIVFAN 2867
            N++  +  IDK F+  PIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFV+TEIKKIV AN
Sbjct: 18   NSNPIDSDIDKQFIGLPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTEIKKIVKAN 77

Query: 2866 EWIRSKVDERVYLRYSDVRIGEPSMIIDGVTEKLTPHKCRLSDTTYAAPIFVNIEYRGQS 2687
            + I S  D  +YLR+ DVRIGEPS+ ++ V+E + PH CRLSD TYAAPI V+IEY  +S
Sbjct: 78   DRIESSTDPSIYLRFLDVRIGEPSVTVNAVSETINPHMCRLSDLTYAAPILVDIEYIEES 137

Query: 2686 QSTETLK-KKDVIIGRMPIMLRSKTCVLYKKDEEELASLGECPLDPGGYFIIKGTEKVIL 2510
             + +  + KKDV+IGRMPIMLRS+ CVL+ KDE ELA LGECPLDPGGYFIIKGTEKV+L
Sbjct: 138  HAQKAPREKKDVVIGRMPIMLRSRCCVLHGKDEAELARLGECPLDPGGYFIIKGTEKVVL 197

Query: 2509 IQEQLSKNRIIIDIDKKGCVQASVTSSTAMTKSKTVIKMEKEKIYLYLNQFKS-KVPIMV 2333
            IQEQLSKNRIIID DKKG + ASVTSST  TKSKTVIKME EKIYL LN F + K+PIMV
Sbjct: 198  IQEQLSKNRIIIDTDKKGNINASVTSSTEATKSKTVIKMENEKIYLQLNIFTTPKIPIMV 257

Query: 2332 VMKAMGMESDQEVVQMIGRDPRYSALLLPSIEECAKANVYTQQQALDYLEKQVKQLPYPS 2153
            V+KAMGMES QEVVQM+GRDPRY ALLLPSIEECAK  +YTQ+QAL+YLE +VK+  + S
Sbjct: 258  VLKAMGMESIQEVVQMVGRDPRYGALLLPSIEECAKEKIYTQEQALEYLETKVKKFQFAS 317

Query: 2152 APVEK--RALSILADIFIANIPVRQQNFRSKCIYVAVMLRRMMEALLNKDAMDDKDYVGN 1979
            AP EK  RAL IL D+F+AN+PV + NF  KCIYVAVM+RRMM+A+L+KDAMDDKDYVGN
Sbjct: 318  APPEKEGRALGILRDVFLANVPVYKNNFHPKCIYVAVMMRRMMDAILSKDAMDDKDYVGN 377

Query: 1978 KRLELSGQMLSLLFEDLFKTMNDEVRKTIDAILDKPSRSSRFDISQYIVKDSITVGLERS 1799
            KRLELSGQ++SLLFEDLFKTM  EV+KTID +L K SRSSRFD SQ++  + I+ GLER+
Sbjct: 378  KRLELSGQLISLLFEDLFKTMVSEVKKTIDKLLGKHSRSSRFDFSQHLNSNIISFGLERT 437

Query: 1798 LSTGNWDVKRFRMHRKGMTQVVARLSYIGTLGHMTKISPQFEKSRKVSGPRALQPSQWGM 1619
            LSTGNWDVKRFRMHRKGM+QV+ARLS+I T+GH+T++SPQFEKSRKVSGPRALQPSQWGM
Sbjct: 438  LSTGNWDVKRFRMHRKGMSQVLARLSFISTMGHVTRVSPQFEKSRKVSGPRALQPSQWGM 497

Query: 1618 LCPCDTPEGEACGLVKNLALMTHVTTDEEEGPIVSLCYCLGVEDLELLSGEELHMPNSFL 1439
            LCPCDTPEGEACGLVKNLALMTHVTTD+EEGP++SLCYCLGVEDLELLS EELH PNSFL
Sbjct: 498  LCPCDTPEGEACGLVKNLALMTHVTTDQEEGPLISLCYCLGVEDLELLSAEELHTPNSFL 557

Query: 1438 IILNGLILGKHRKPQRFANAMRKLRRAGKIGEFVSIYVNETQRCVYIASDGGRVCRPLVI 1259
            +I NG ILGKHR+PQ FA  MR LRRAGKIGEFVS++VNE Q CVYIASDGGRVCRPLVI
Sbjct: 558  VIFNGRILGKHRRPQYFATGMRMLRRAGKIGEFVSVFVNEKQHCVYIASDGGRVCRPLVI 617

Query: 1258 ADKGVSRIKEHHMKELKDGVRNFDSFLREGLIEYLDVNEENNALIALYESEATPETTHIE 1079
            ADKGVSRIKE+HMKEL DGVR FD FLR+GLIEYLDVNEENNALIALYE EATPETTHIE
Sbjct: 618  ADKGVSRIKEYHMKELSDGVRTFDDFLRDGLIEYLDVNEENNALIALYEGEATPETTHIE 677

Query: 1078 IEPLTILGVCAGLIPFPHHNQSPRNTYQCAMGKQAMGNIAYNELCRMDTLIYLLVYPQRP 899
            IEP TILGV AGLIP+PHHNQSPRNTYQCAMGKQAMGNIAYN+L RMDTL+YLLVYPQRP
Sbjct: 678  IEPFTILGVVAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLRRMDTLLYLLVYPQRP 737

Query: 898  LLTTKTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMKKMSAI 719
            LLTTKTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIV KK S++
Sbjct: 738  LLTTKTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVFKKYSSV 797

Query: 718  SQKYENGTSDRIIRPQRQGYDAERMQILDDDGLAAPGEIIRPHDIYINKESPKVIRGPVT 539
            +QKYEN T+DRI+RP R       MQILDDDGLAAPGEIIRP+DIY+NK+SP +++G   
Sbjct: 798  NQKYENNTADRIVRPNRNEDFTGNMQILDDDGLAAPGEIIRPNDIYVNKQSPIIMKG--- 854

Query: 538  SP-AGLSDSDYKPSKQTYKGPEGETAVVDRVALCSDKNNNLCIKYMIRHTRRPEVGDKFS 362
            SP  G+ D+ Y+P +Q +KG EGE  VVDRVAL +DKN+ LCIK++IR TRRPE+GDKFS
Sbjct: 855  SPLPGIPDNAYRPCRQIFKGSEGEPTVVDRVALSTDKNDCLCIKFLIRQTRRPELGDKFS 914

Query: 361  SRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGSKAGVSSGRF 182
            SRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLG KAGVS GRF
Sbjct: 915  SRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRF 974

Query: 181  HYGSAFGEPSGHADTVEAISETLVNHGFSYNGKDFLYSGITGMPLQAYIYMGPIYYQKLK 2
            HYGSAFGEPSGHAD V+AISETL+  GFSYNGKDFLYSGITG PLQAYI+MGPIYYQKLK
Sbjct: 975  HYGSAFGEPSGHADKVDAISETLIKRGFSYNGKDFLYSGITGCPLQAYIFMGPIYYQKLK 1034


>ref|XP_006362278.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like [Solanum
            tuberosum]
          Length = 1151

 Score = 1617 bits (4186), Expect = 0.0
 Identities = 818/1027 (79%), Positives = 904/1027 (88%), Gaps = 7/1027 (0%)
 Frame = -1

Query: 3061 TVQEGNNDTNELGIDKSFLAAPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVSTEIKK 2882
            T+   +N+ N  GIDK +LA+PIK++VDK+QL+PEFLKVRGLVKQHL SFNY V T+IKK
Sbjct: 8    TMSSPSNNLNN-GIDKQYLASPIKNSVDKYQLIPEFLKVRGLVKQHLASFNYLVKTDIKK 66

Query: 2881 IVFANEWIRSKV-DERVYLRYSDVRIGEPSMIIDGVTEKLTPHKCRLSDTTYAAPIFVNI 2705
            IV AN  IRS   D  +YLRY DVRIGEPSM  DGV EKL+P KCRL+D TYAAPIFV +
Sbjct: 67   IVRANHEIRSSTRDPNIYLRYRDVRIGEPSMTYDGVREKLSPQKCRLADLTYAAPIFVTV 126

Query: 2704 EYR-GQSQSTETLKKKDVIIGRMPIMLRSKTCVLYKKDEEELASLGECPLDPGGYFIIKG 2528
            +Y   ++     L +KDV+I RMPIMLRS  CVLY+KDEE+LA LGECPLDPGGYFI+ G
Sbjct: 127  DYTMTRNGQISMLTQKDVVIARMPIMLRSCLCVLYEKDEEQLAKLGECPLDPGGYFIVNG 186

Query: 2527 TEKVILIQEQLSKNRIIIDIDKKGCVQASVTSSTAMTKSKTVIKMEKEKIYLYLNQFKSK 2348
             EKVILIQEQLSKNRIIID D+KGCVQASV  ST  TKSKT+IKMEKEK+YL LN FK+K
Sbjct: 187  REKVILIQEQLSKNRIIIDTDRKGCVQASVICSTEKTKSKTIIKMEKEKVYLELNMFKTK 246

Query: 2347 VPIMVVMKAMGMESDQEVVQMIGRDPRYSALLLPSIEECAKANVYTQQQALDYLE--KQV 2174
            VPIMVVMKAMGMESDQEVVQMIGRDPRYSALLLPSIEECA   +YTQ QAL++LE  K +
Sbjct: 247  VPIMVVMKAMGMESDQEVVQMIGRDPRYSALLLPSIEECADLKLYTQHQALEFLESDKML 306

Query: 2173 KQLPYPSAPVEK--RALSILADIFIANIPVRQQNFRSKCIYVAVMLRRMMEALLNKDAMD 2000
                Y +APVEK  RALSIL D+F+A++PV Q NFR KCIYVAVM+RR+MEA+LNKDAMD
Sbjct: 307  TMPSYYNAPVEKGARALSILRDMFLAHVPVHQHNFRKKCIYVAVMMRRVMEAILNKDAMD 366

Query: 1999 DKDYVGNKRLELSGQMLSLLFEDLFKTMNDEVRKTIDAILDKPSRSSRFDISQYIVKDS- 1823
            DKDYVGNKRLELSGQ+LSLLFEDLFKTMNDEVR+  DA     S+SS  D+  ++ K + 
Sbjct: 367  DKDYVGNKRLELSGQLLSLLFEDLFKTMNDEVRREFDA----SSKSS--DLLYHVKKSNR 420

Query: 1822 ITVGLERSLSTGNWDVKRFRMHRKGMTQVVARLSYIGTLGHMTKISPQFEKSRKVSGPRA 1643
            ITV L+R+LSTGNWD+KRFRMHRKGMT+V+ARLSYIGTLG+MTKI PQFEKSRKVSGPRA
Sbjct: 421  ITVELQRTLSTGNWDIKRFRMHRKGMTEVLARLSYIGTLGYMTKIKPQFEKSRKVSGPRA 480

Query: 1642 LQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPIVSLCYCLGVEDLELLSGEE 1463
            LQPSQ+GM+CPCDTPEGEACGLVKNLALMTHVTTDE+  PI+SLCY LGVEDLE LS  E
Sbjct: 481  LQPSQFGMICPCDTPEGEACGLVKNLALMTHVTTDEDARPIMSLCYDLGVEDLEQLSAAE 540

Query: 1462 LHMPNSFLIILNGLILGKHRKPQRFANAMRKLRRAGKIGEFVSIYVNETQRCVYIASDGG 1283
            LH PNS+LIILNGLILGKH+ PQRFAN MRKLRRAG+I EFVSI+VN+ Q CVYIASDGG
Sbjct: 541  LHTPNSYLIILNGLILGKHKSPQRFANGMRKLRRAGRIREFVSIFVNDKQCCVYIASDGG 600

Query: 1282 RVCRPLVIADKGVSRIKEHHMKELKDGVRNFDSFLREGLIEYLDVNEENNALIALYESEA 1103
            RVCRPLVIA+KGVSRIKEHHM EL+DGVR+F+SFLR+GLIEYLDVNEENN+LIALYE EA
Sbjct: 601  RVCRPLVIAEKGVSRIKEHHMNELRDGVRDFNSFLRDGLIEYLDVNEENNSLIALYEKEA 660

Query: 1102 TPETTHIEIEPLTILGVCAGLIPFPHHNQSPRNTYQCAMGKQAMGNIAYNELCRMDTLIY 923
            TP+TTHIEIEP TILGVCAGLIP+PHHNQSPRNTYQCAMGKQAMGNIAYN+L RMD L+Y
Sbjct: 661  TPDTTHIEIEPFTILGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLNRMDGLLY 720

Query: 922  LLVYPQRPLLTTKTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCI 743
            LLVYPQRPLLTT+TIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCI
Sbjct: 721  LLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCI 780

Query: 742  VMKKMSAISQKYENGTSDRIIRPQRQGYDAERMQILDDDGLAAPGEIIRPHDIYINKESP 563
            VMKK +AI QKY+N TSDR+I+PQRQG +AE+MQILDDDGLA+PGEIIR  DIYINKESP
Sbjct: 781  VMKKYAAICQKYKNLTSDRLIKPQRQGSEAEKMQILDDDGLASPGEIIRNRDIYINKESP 840

Query: 562  KVIRGPVTSPAGLSDSDYKPSKQTYKGPEGETAVVDRVALCSDKNNNLCIKYMIRHTRRP 383
             V    VTSP GL DS YK S+QTYKG EGE  V+DRVAL SD+NNNL IK+MIR TRRP
Sbjct: 841  TVTITQVTSPMGLPDSAYKSSRQTYKGTEGEPTVIDRVALHSDENNNLSIKFMIRQTRRP 900

Query: 382  EVGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGSKA 203
            E+GDKFSSRHGQKGVCG IVQQED PFSERGICPDLIMNPHGFPSRMTVGKMIELLGSKA
Sbjct: 901  EIGDKFSSRHGQKGVCGIIVQQEDLPFSERGICPDLIMNPHGFPSRMTVGKMIELLGSKA 960

Query: 202  GVSSGRFHYGSAFGEPSGHADTVEAISETLVNHGFSYNGKDFLYSGITGMPLQAYIYMGP 23
            GVS GRFHYGSAFGEPSGHADTV+AISETLV HGFSYNGKDF+YSGITGMPLQAYI+MGP
Sbjct: 961  GVSCGRFHYGSAFGEPSGHADTVDAISETLVKHGFSYNGKDFIYSGITGMPLQAYIFMGP 1020

Query: 22   IYYQKLK 2
            IYYQKLK
Sbjct: 1021 IYYQKLK 1027


>ref|XP_004249177.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like [Solanum
            lycopersicum]
          Length = 1149

 Score = 1600 bits (4144), Expect = 0.0
 Identities = 809/1026 (78%), Positives = 897/1026 (87%), Gaps = 6/1026 (0%)
 Frame = -1

Query: 3061 TVQEGNNDTNELGIDKSFLAAPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVSTEIKK 2882
            T+    N+ N  GIDK +LA+PIK++VDK+QL+PEFLKVRGLVKQHL SFNY V T+I+K
Sbjct: 8    TMSSPRNNLNN-GIDKQYLASPIKNSVDKYQLIPEFLKVRGLVKQHLASFNYLVKTDIRK 66

Query: 2881 IVFANEWIRSKVDERVYLRYSDVRIGEPSMIIDGVTEKLTPHKCRLSDTTYAAPIFVNIE 2702
            IV AN  IRS  D  ++LRY DVRIGEPSM  DGV EKL+P KCRL+D TYAAPIFV ++
Sbjct: 67   IVRANHEIRSTRDPNIFLRYRDVRIGEPSMTYDGVREKLSPQKCRLADLTYAAPIFVTVD 126

Query: 2701 YRG-QSQSTETLKKKDVIIGRMPIMLRSKTCVLYKKDEEELASLGECPLDPGGYFIIKGT 2525
            Y   ++       +KDV+IGRMPIMLRS  CVLY+KDEE+LA LGECPLDPGGYF++ G 
Sbjct: 127  YTMIRNGQISMATQKDVVIGRMPIMLRSCLCVLYEKDEEQLAKLGECPLDPGGYFVVNGR 186

Query: 2524 EKVILIQEQLSKNRIIIDIDKKGCVQASVTSSTAMTKSKTVIKMEKEKIYLYLNQFKSKV 2345
            EKVILIQEQLSKNRIIID D+KGCVQASV  ST  TKSKT+IKMEKEK+YL LN FK+KV
Sbjct: 187  EKVILIQEQLSKNRIIIDTDRKGCVQASVICSTEKTKSKTIIKMEKEKVYLELNMFKTKV 246

Query: 2344 PIMVVMKAMGMESDQEVVQMIGRDPRYSALLLPSIEECAKANVYTQQQALDYLE--KQVK 2171
            PIMVVMKAMGMESDQEVVQMIGRDPRYSALLLPSIEECA   +YTQ QAL++LE  K  +
Sbjct: 247  PIMVVMKAMGMESDQEVVQMIGRDPRYSALLLPSIEECADLKLYTQHQALEFLENDKMFR 306

Query: 2170 QLPYPSAPVEK--RALSILADIFIANIPVRQQNFRSKCIYVAVMLRRMMEALLNKDAMDD 1997
               Y + PVEK  RALSIL D+F+A++PV Q NFR KCIYVAVM+RRMMEA+LNKDAMDD
Sbjct: 307  MPSYSTGPVEKGARALSILRDMFLAHVPVNQHNFRKKCIYVAVMMRRMMEAILNKDAMDD 366

Query: 1996 KDYVGNKRLELSGQMLSLLFEDLFKTMNDEVRKTIDAILDKPSRSSRFDISQYIVKDS-I 1820
            KDYVGNKRLELSGQ+LSLLFEDLFK+MNDE R+  DA   KPS     D+  ++ + + I
Sbjct: 367  KDYVGNKRLELSGQLLSLLFEDLFKSMNDEARREFDAY-SKPS-----DLLYHVKRSNRI 420

Query: 1819 TVGLERSLSTGNWDVKRFRMHRKGMTQVVARLSYIGTLGHMTKISPQFEKSRKVSGPRAL 1640
            TV L+R+LSTGNWD+KRFRMHRKGMT+V+ARLSYIGTLG+MTKI PQFEKSRKVSGPRAL
Sbjct: 421  TVELQRALSTGNWDIKRFRMHRKGMTEVLARLSYIGTLGYMTKIKPQFEKSRKVSGPRAL 480

Query: 1639 QPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPIVSLCYCLGVEDLELLSGEEL 1460
            QPSQ+GM+CPCDTPEGEACGLVKNLALMTHVTTDE+E PI+SLCY LGVEDLE LS  EL
Sbjct: 481  QPSQFGMICPCDTPEGEACGLVKNLALMTHVTTDEDERPIMSLCYDLGVEDLEQLSAAEL 540

Query: 1459 HMPNSFLIILNGLILGKHRKPQRFANAMRKLRRAGKIGEFVSIYVNETQRCVYIASDGGR 1280
            H PNS+LIILNGLILGKHR PQRFAN MRKLRRAG+I EFVSI+VN+ Q CVYIASDGGR
Sbjct: 541  HTPNSYLIILNGLILGKHRSPQRFANGMRKLRRAGQIREFVSIFVNDKQCCVYIASDGGR 600

Query: 1279 VCRPLVIADKGVSRIKEHHMKELKDGVRNFDSFLREGLIEYLDVNEENNALIALYESEAT 1100
            VCRPLVIA+KGVSRIKE HM EL+DGVR+F+SFLR+GLIEYLDVNEENN+LIALYE EAT
Sbjct: 601  VCRPLVIAEKGVSRIKELHMNELRDGVRDFNSFLRDGLIEYLDVNEENNSLIALYEKEAT 660

Query: 1099 PETTHIEIEPLTILGVCAGLIPFPHHNQSPRNTYQCAMGKQAMGNIAYNELCRMDTLIYL 920
            P+TTHIEIEP TILGVCAGLIP+PHHNQSPRNTYQCAMGKQAMGNIAYN+L RMD L+YL
Sbjct: 661  PDTTHIEIEPFTILGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLNRMDGLLYL 720

Query: 919  LVYPQRPLLTTKTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIV 740
            LVYPQRPLLTT+TIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIV
Sbjct: 721  LVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIV 780

Query: 739  MKKMSAISQKYENGTSDRIIRPQRQGYDAERMQILDDDGLAAPGEIIRPHDIYINKESPK 560
            MKK +A+ QKY+N TSDR+I+PQRQGY+AER  ILDDDGLA+PGEIIR  DIYINKESP 
Sbjct: 781  MKKHAAMCQKYKNLTSDRLIKPQRQGYEAER--ILDDDGLASPGEIIRNGDIYINKESPT 838

Query: 559  VIRGPVTSPAGLSDSDYKPSKQTYKGPEGETAVVDRVALCSDKNNNLCIKYMIRHTRRPE 380
            V    VTSP  L DS Y+ S+QTYKG EGE  V+DRVAL SD+NNNL IK+MIR TRRPE
Sbjct: 839  VTVATVTSPMDLPDSAYRLSRQTYKGTEGEPTVIDRVALHSDENNNLSIKFMIRQTRRPE 898

Query: 379  VGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGSKAG 200
            +GDKFSSRHGQKGVCG IVQQED PFSERGICPDLIMNPHGFPSRMTVGKMIELLGSKAG
Sbjct: 899  IGDKFSSRHGQKGVCGIIVQQEDLPFSERGICPDLIMNPHGFPSRMTVGKMIELLGSKAG 958

Query: 199  VSSGRFHYGSAFGEPSGHADTVEAISETLVNHGFSYNGKDFLYSGITGMPLQAYIYMGPI 20
            VS GRFHYGSAFGEPSGHADTV+AISETLV HGF YNGKDF+YSGITGMPLQAYI+MGPI
Sbjct: 959  VSCGRFHYGSAFGEPSGHADTVDAISETLVKHGFCYNGKDFIYSGITGMPLQAYIFMGPI 1018

Query: 19   YYQKLK 2
            YYQKLK
Sbjct: 1019 YYQKLK 1024


>ref|XP_006494574.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like isoform
            X3 [Citrus sinensis]
          Length = 1058

 Score = 1577 bits (4084), Expect = 0.0
 Identities = 770/934 (82%), Positives = 852/934 (91%), Gaps = 3/934 (0%)
 Frame = -1

Query: 2794 MIIDGVTEKLTPHKCRLSDTTYAAPIFVNIEY-RGQSQSTETLKKKDVIIGRMPIMLRSK 2618
            M +DGV+EKL PH CRLSD TYAAPI VNIEY +G      T++K DV+IGR+PIMLRS 
Sbjct: 1    MTVDGVSEKLNPHMCRLSDMTYAAPILVNIEYVQGSHTEKTTMEKNDVVIGRIPIMLRSC 60

Query: 2617 TCVLYKKDEEELASLGECPLDPGGYFIIKGTEKVILIQEQLSKNRIIIDIDKKGCVQASV 2438
             CVLY KDE ELA LGECPLDPGGYFIIKGTEKV+LIQEQLSKNR+IID DKKG + ASV
Sbjct: 61   RCVLYGKDEAELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRVIIDTDKKGNINASV 120

Query: 2437 TSSTAMTKSKTVIKMEKEKIYLYLNQFKSKVPIMVVMKAMGMESDQEVVQMIGRDPRYSA 2258
            TSST   KSKTVI+MEK K+YL LNQF  K+PIMVVMKAMG+ESDQEVVQM+GRDPRYSA
Sbjct: 121  TSSTETVKSKTVIQMEKGKMYLLLNQFVKKIPIMVVMKAMGIESDQEVVQMVGRDPRYSA 180

Query: 2257 LLLPSIEECAKANVYTQQQALDYLEKQVKQLPYPSAPVEK--RALSILADIFIANIPVRQ 2084
            LLLPSIEECA  ++YTQ++AL+YLE +VK+  + S P ++  RA SIL D+F+AN+PV  
Sbjct: 181  LLLPSIEECANLDIYTQEKALEYLEGKVKRSTFGSPPNDREGRAFSILRDVFLANVPVHN 240

Query: 2083 QNFRSKCIYVAVMLRRMMEALLNKDAMDDKDYVGNKRLELSGQMLSLLFEDLFKTMNDEV 1904
             NFR KC YVAVMLRRM+EA+LNKDAMDDKDYVGNKRLELSGQ++SLLFEDLFKTM  EV
Sbjct: 241  NNFRPKCFYVAVMLRRMVEAMLNKDAMDDKDYVGNKRLELSGQLVSLLFEDLFKTMISEV 300

Query: 1903 RKTIDAILDKPSRSSRFDISQYIVKDSITVGLERSLSTGNWDVKRFRMHRKGMTQVVARL 1724
            +KT+D IL KPSRSSRFD+SQ+IV+DSITVGLER+LSTGN+DVKRF+MHRKGMTQV+ARL
Sbjct: 301  QKTVDIILSKPSRSSRFDLSQFIVRDSITVGLERTLSTGNFDVKRFKMHRKGMTQVLARL 360

Query: 1723 SYIGTLGHMTKISPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVT 1544
            S+IGTLGHMT++SPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVT
Sbjct: 361  SFIGTLGHMTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVT 420

Query: 1543 TDEEEGPIVSLCYCLGVEDLELLSGEELHMPNSFLIILNGLILGKHRKPQRFANAMRKLR 1364
            TDEEEGP++SLCYCLGVEDLELLSGEELH PNSFL+I NGLILGKHR+P+ FA+ MRKLR
Sbjct: 421  TDEEEGPLISLCYCLGVEDLELLSGEELHNPNSFLVIFNGLILGKHRRPKCFADVMRKLR 480

Query: 1363 RAGKIGEFVSIYVNETQRCVYIASDGGRVCRPLVIADKGVSRIKEHHMKELKDGVRNFDS 1184
            RAGKIGEFVS++VNE QRCVYIASDGGRVCRPLVIADKG+SRIKEHHMKEL DGVR+FD 
Sbjct: 481  RAGKIGEFVSVFVNEKQRCVYIASDGGRVCRPLVIADKGISRIKEHHMKELLDGVRSFDD 540

Query: 1183 FLREGLIEYLDVNEENNALIALYESEATPETTHIEIEPLTILGVCAGLIPFPHHNQSPRN 1004
            FLREGLIEYLDVNEENNALIALYE +ATP+TTHIEIEP TILGV AGLIP+PHHNQSPRN
Sbjct: 541  FLREGLIEYLDVNEENNALIALYEGDATPDTTHIEIEPFTILGVIAGLIPYPHHNQSPRN 600

Query: 1003 TYQCAMGKQAMGNIAYNELCRMDTLIYLLVYPQRPLLTTKTIELVGYDKLGAGQNATVAV 824
            TYQCAMGKQAMGNIA+N+LCRMD+L+YLLVYPQRPLLTT+TIELVGYDKLGAGQNATVAV
Sbjct: 601  TYQCAMGKQAMGNIAFNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAV 660

Query: 823  MSYSGYDIEDAIVMNKSSLDRGFGRCIVMKKMSAISQKYENGTSDRIIRPQRQGYDAERM 644
            MSYSGYDIEDAIVMNKSSLDRGFGRCIV+KK +AI+QKY N TSDRI+RP R G  AERM
Sbjct: 661  MSYSGYDIEDAIVMNKSSLDRGFGRCIVVKKYTAINQKYANSTSDRILRPDRTGPGAERM 720

Query: 643  QILDDDGLAAPGEIIRPHDIYINKESPKVIRGPVTSPAGLSDSDYKPSKQTYKGPEGETA 464
            QILDDDGLAAPGEII+P+D+YINKESP   RG + SP G +DS Y+ ++QTYKGP+GET 
Sbjct: 721  QILDDDGLAAPGEIIKPNDVYINKESPLETRGSIMSPTGQTDSRYRSARQTYKGPDGETC 780

Query: 463  VVDRVALCSDKNNNLCIKYMIRHTRRPEVGDKFSSRHGQKGVCGTIVQQEDFPFSERGIC 284
            VVDRVALCSDKN +LCIK++IRHTRRPE+GDKFSSRHGQKGVCGTIVQQEDFPFSERGIC
Sbjct: 781  VVDRVALCSDKNGDLCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSERGIC 840

Query: 283  PDLIMNPHGFPSRMTVGKMIELLGSKAGVSSGRFHYGSAFGEPSGHADTVEAISETLVNH 104
            PDLIMNPHGFPSRMTVGKMIELLG KAGVS GRFHYGSAFGEPSGHADTVE+ISETLV H
Sbjct: 841  PDLIMNPHGFPSRMTVGKMIELLGGKAGVSCGRFHYGSAFGEPSGHADTVESISETLVKH 900

Query: 103  GFSYNGKDFLYSGITGMPLQAYIYMGPIYYQKLK 2
            GFSYNGKD +YSGITG PLQAYI+MGPIYYQKLK
Sbjct: 901  GFSYNGKDMIYSGITGCPLQAYIFMGPIYYQKLK 934


>ref|XP_002863522.1| hypothetical protein ARALYDRAFT_917015 [Arabidopsis lyrata subsp.
            lyrata] gi|297309357|gb|EFH39781.1| hypothetical protein
            ARALYDRAFT_917015 [Arabidopsis lyrata subsp. lyrata]
          Length = 1165

 Score = 1575 bits (4077), Expect = 0.0
 Identities = 786/1034 (76%), Positives = 894/1034 (86%), Gaps = 20/1034 (1%)
 Frame = -1

Query: 3043 NDTNELGIDKSFLAAPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVSTEIKKIVFANE 2864
            ND N   IDK  L+APIKS  DKFQL+PEFLKVRGLVKQHLDSFNYF++  IKKIV AN 
Sbjct: 12   NDDNF--IDKEKLSAPIKSTADKFQLVPEFLKVRGLVKQHLDSFNYFINVGIKKIVHANC 69

Query: 2863 WIRSKVDERVYLRYSDVRIGEPSMIIDGVTEKLTPHKCRLSDTTYAAPIFVNIEY-RGQS 2687
             I S  D  +YLR+ +VR+GEPS++   ++E++ PH CRL+D TYAAPI+VNIEY  G  
Sbjct: 70   RIASVTDPSIYLRFKNVRVGEPSIMNINISEEINPHMCRLADMTYAAPIYVNIEYVHGSH 129

Query: 2686 QSTETLKKKDVIIGRMPIMLRSKTCVLYKKDEEELASLGECPLDPGGYFIIKGTEKVILI 2507
                T  K D IIGRMPIMLRS  CVL+ KDEEELA LGECPLDPGGYF+IKGTEKV+LI
Sbjct: 130  GKKATSVKNDFIIGRMPIMLRSCRCVLHGKDEEELARLGECPLDPGGYFVIKGTEKVLLI 189

Query: 2506 QEQLSKNRIIIDIDKKGCVQASVTSSTAMTKSKTVIKMEKEKIYLYLNQFKSKVPIMVVM 2327
            QEQLSKNRIIID DKKG + ASVTSST MTKSKTVI+MEKEKIYL+L+QF  K+PI++V+
Sbjct: 190  QEQLSKNRIIIDSDKKGNINASVTSSTEMTKSKTVIQMEKEKIYLFLHQFVKKIPIVIVL 249

Query: 2326 KAMGMESDQEVVQMIGRDPRYSALLLPSIEECAKANVYTQQQALDYLEKQVKQLPY-PSA 2150
            KAMGMESDQE+VQM+GRDPR+SA LLPSIEEC    V TQ+QALDYLE +VK+  Y P  
Sbjct: 250  KAMGMESDQEIVQMVGRDPRFSASLLPSIEECVSEGVNTQKQALDYLEAKVKKTSYGPPP 309

Query: 2149 PVEKRALSILADIFIANIPVRQQNFRSKCIYVAVMLRRMMEALLNKDAMDDKDYVGNKRL 1970
              + RAL IL D+F+A++PVR  NFR KC YV VMLRRM+EA+LNKD+MDDKDYVGNKRL
Sbjct: 310  EKDGRALYILRDLFLAHVPVRDNNFRQKCFYVGVMLRRMIEAMLNKDSMDDKDYVGNKRL 369

Query: 1969 ELSGQMLSLLFEDLFKTMNDEVRKTIDAILDKPSRSSRFDISQYIV----KDSITVGLER 1802
            ELSGQ++SLLFEDLFKTM  E  K +DAIL KPSR+SRFD SQY+     +++I+VGLER
Sbjct: 370  ELSGQLMSLLFEDLFKTMLSEAIKKVDAILSKPSRASRFDFSQYLTTGDSQNTISVGLER 429

Query: 1801 SLSTGNWDVKRFRMHRKGMTQVVARLSYIGTLGHMTKISPQFEKSRKVSGPRALQPSQWG 1622
            +LSTGN+D+KRFRMHRKGMTQV+ RLS+IG+LG +TKISPQFEKSRKVSGPR+LQPSQWG
Sbjct: 430  TLSTGNFDIKRFRMHRKGMTQVLTRLSFIGSLGFITKISPQFEKSRKVSGPRSLQPSQWG 489

Query: 1621 MLCPCDTPEGEACGLVKNLALMTHVTTDEEEGPIVSLCYCLGVEDLELLSGEELHMPNSF 1442
            MLCPCDTPEGE+CGLVKNLALMTHVTTDEEEGP+V++CY LGV DLE+LS EELH P+SF
Sbjct: 490  MLCPCDTPEGESCGLVKNLALMTHVTTDEEEGPLVAMCYKLGVTDLEVLSAEELHTPDSF 549

Query: 1441 LIILNGLILGKHRKPQRFANAMRKLRRAGKIGEFVSIYVNETQRCVYIASDGGRVCRPLV 1262
            L+ILNGLILGKHR+PQ FAN++R+LRRAGKIGEFVS++ NE Q CVY+ASDGGRVCRPLV
Sbjct: 550  LVILNGLILGKHRRPQYFANSLRRLRRAGKIGEFVSVFTNEKQHCVYVASDGGRVCRPLV 609

Query: 1261 IADKGVSRIKEHHMKELKDGVRNFDSFLREGLIEYLDVNEENNALIALYESEATPE---- 1094
            IADKG+SR+K+HHMKEL+DGVR FD F+R+GLIEYLDVNEENNALIALYESEAT E    
Sbjct: 610  IADKGISRVKQHHMKELQDGVRTFDDFIRDGLIEYLDVNEENNALIALYESEATTELDEG 669

Query: 1093 ---------TTHIEIEPLTILGVCAGLIPFPHHNQSPRNTYQCAMGKQAMGNIAYNELCR 941
                     TTHIEIEP TILGV AGLIP+PHHNQSPRNTYQCAMGKQAMGNIAYN+L R
Sbjct: 670  AEAAKIKADTTHIEIEPFTILGVVAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLNR 729

Query: 940  MDTLIYLLVYPQRPLLTTKTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDR 761
            MDTL+YLLVYPQRPLLTT+TIELVGYDKLGAGQNATVAVMS SGYDIEDAIVMNKSSLDR
Sbjct: 730  MDTLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSNSGYDIEDAIVMNKSSLDR 789

Query: 760  GFGRCIVMKKMSAISQKYENGTSDRIIRPQRQGYDAERMQILDDDGLAAPGEIIRPHDIY 581
            GFGRCIVMKK+ A  QKYENGT DRI+ PQR G DAE+MQILDDDG+A+PGEIIRP+D+Y
Sbjct: 790  GFGRCIVMKKIVATCQKYENGTVDRILMPQRTGPDAEKMQILDDDGIASPGEIIRPNDVY 849

Query: 580  INKESPK-VIRGPVTSPAGLSDSDYKPSKQTYKGPEGETAVVDRVALCSDKNNNLCIKYM 404
            I K+ P    R  +TSP  LSDS Y+P+++ +KGPEGET VVDRVALCSDK+ +LCIKY+
Sbjct: 850  IYKQIPVCTTRDKITSP--LSDSQYRPAREFFKGPEGETQVVDRVALCSDKSGSLCIKYI 907

Query: 403  IRHTRRPEVGDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMI 224
            IRHTRRPE+GDKFSSRHGQKGVCGTI+QQEDFPFSE GICPDLIMNPHGFPSRMTVGKMI
Sbjct: 908  IRHTRRPELGDKFSSRHGQKGVCGTIIQQEDFPFSELGICPDLIMNPHGFPSRMTVGKMI 967

Query: 223  ELLGSKAGVSSGRFHYGSAFGEPSGHADTVEAISETLVNHGFSYNGKDFLYSGITGMPLQ 44
            ELLGSKAGVS GRFHYGSAFGE SGHAD VE IS+TLV+ GFSY+GKD LYSG++G PL+
Sbjct: 968  ELLGSKAGVSCGRFHYGSAFGERSGHADKVETISKTLVDKGFSYSGKDLLYSGLSGEPLE 1027

Query: 43   AYIYMGPIYYQKLK 2
            AYI+MGPIYYQKLK
Sbjct: 1028 AYIFMGPIYYQKLK 1041


>ref|XP_006398163.1| hypothetical protein EUTSA_v10000748mg [Eutrema salsugineum]
            gi|557099252|gb|ESQ39616.1| hypothetical protein
            EUTSA_v10000748mg [Eutrema salsugineum]
          Length = 1164

 Score = 1572 bits (4070), Expect = 0.0
 Identities = 778/1025 (75%), Positives = 886/1025 (86%), Gaps = 18/1025 (1%)
 Frame = -1

Query: 3022 IDKSFLAAPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVSTEIKKIVFANEWIRSKVD 2843
            +D+  L+APIKS  DKFQL+PEFLKVRGLVKQHLDSFNYFV+  IKKIV AN  I S +D
Sbjct: 17   VDRQKLSAPIKSTADKFQLVPEFLKVRGLVKQHLDSFNYFVNVGIKKIVRANSLITSSLD 76

Query: 2842 ERVYLRYSDVRIGEPSMIIDGVTEKLTPHKCRLSDTTYAAPIFVNIEY-RGQSQSTETLK 2666
              +YLR+ +VR+GEPS++   + E++ PH CRL+D TYAAPI+VNIEY  G    T+   
Sbjct: 77   PEIYLRFKEVRVGEPSILNVNMAEEINPHMCRLADMTYAAPIYVNIEYAHGSHGKTQHSA 136

Query: 2665 KKDVIIGRMPIMLRSKTCVLYKKDEEELASLGECPLDPGGYFIIKGTEKVILIQEQLSKN 2486
            K +VIIGRMPIMLRS  CVL+ KDEEELA LGECPLDPGGYF+IKGTEKV+LIQEQLSKN
Sbjct: 137  KDNVIIGRMPIMLRSCRCVLHGKDEEELARLGECPLDPGGYFVIKGTEKVLLIQEQLSKN 196

Query: 2485 RIIIDIDKKGCVQASVTSSTAMTKSKTVIKMEKEKIYLYLNQFKSKVPIMVVMKAMGMES 2306
            RIIID DKKG + ASVTSST MTKSKTVI+MEK KIYL+L+QF  K+PI++V+KAMGMES
Sbjct: 197  RIIIDSDKKGNINASVTSSTEMTKSKTVIQMEKGKIYLFLHQFVKKIPIIIVLKAMGMES 256

Query: 2305 DQEVVQMIGRDPRYSALLLPSIEECAKANVYTQQQALDYLEKQVKQLPY-PSAPVEKRAL 2129
            DQE+VQM+GRDPR+SA LLPSIEEC    V T++QALDYLE +VK+  Y P    + RAL
Sbjct: 257  DQEIVQMVGRDPRFSASLLPSIEECVSEGVNTRKQALDYLEAKVKKTSYGPPPEKDGRAL 316

Query: 2128 SILADIFIANIPVRQQNFRSKCIYVAVMLRRMMEALLNKDAMDDKDYVGNKRLELSGQML 1949
             IL D+F+A++PVR  NFR KC YV VMLRRM+EA+LNKDAMDDKDYVGNKRLELSGQ++
Sbjct: 317  YILRDVFLAHVPVRDNNFRQKCFYVGVMLRRMIEAMLNKDAMDDKDYVGNKRLELSGQLI 376

Query: 1948 SLLFEDLFKTMNDEVRKTIDAILDKPSRSSRFDISQYIVKD---SITVGLERSLSTGNWD 1778
            SLLFEDLFKTM  E  K +D IL KP+R+SRFD SQ +  +   +I+ GLER+LSTGN+D
Sbjct: 377  SLLFEDLFKTMITEAVKKVDGILQKPNRASRFDFSQCLTGEKNHNISFGLERTLSTGNFD 436

Query: 1777 VKRFRMHRKGMTQVVARLSYIGTLGHMTKISPQFEKSRKVSGPRALQPSQWGMLCPCDTP 1598
            +KRFRMHRKGMTQV+ RLS+IG+LG +TKISPQFEKSRKVSGPR+LQPSQWGMLCPCDTP
Sbjct: 437  IKRFRMHRKGMTQVLTRLSFIGSLGFITKISPQFEKSRKVSGPRSLQPSQWGMLCPCDTP 496

Query: 1597 EGEACGLVKNLALMTHVTTDEEEGPIVSLCYCLGVEDLELLSGEELHMPNSFLIILNGLI 1418
            EGE+CGLVKNLALMTHVTTDEEEGP+V++CY LGV DLE+LS EELH P+SFL+I NGLI
Sbjct: 497  EGESCGLVKNLALMTHVTTDEEEGPLVAMCYKLGVTDLEVLSAEELHTPDSFLVIFNGLI 556

Query: 1417 LGKHRKPQRFANAMRKLRRAGKIGEFVSIYVNETQRCVYIASDGGRVCRPLVIADKGVSR 1238
            LGKHR+PQ FAN++R+LRRAGKIGEFVS+++NE Q CVY+ASDGGRVCRPLVIADKGVSR
Sbjct: 557  LGKHRRPQYFANSLRRLRRAGKIGEFVSVFINEKQHCVYVASDGGRVCRPLVIADKGVSR 616

Query: 1237 IKEHHMKELKDGVRNFDSFLREGLIEYLDVNEENNALIALYESEATPE------------ 1094
            +K+HHMKEL+DGVR FD F+R+GLIEYLDVNEENNALIALYES+AT E            
Sbjct: 617  VKQHHMKELQDGVRTFDDFIRDGLIEYLDVNEENNALIALYESDATSEMAETAEAAKIRE 676

Query: 1093 -TTHIEIEPLTILGVCAGLIPFPHHNQSPRNTYQCAMGKQAMGNIAYNELCRMDTLIYLL 917
             TTHIEIEP TILGV AGLIP+PHHNQSPRNTYQCAMGKQAMGNIAYN+L RMDTL+YLL
Sbjct: 677  GTTHIEIEPFTILGVVAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLNRMDTLLYLL 736

Query: 916  VYPQRPLLTTKTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVM 737
            VYPQRPLLTT+TIELVGYDKLGAGQNATVAVMS +GYDIEDAIVMNK+SLDRGFGRCIVM
Sbjct: 737  VYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSNTGYDIEDAIVMNKASLDRGFGRCIVM 796

Query: 736  KKMSAISQKYENGTSDRIIRPQRQGYDAERMQILDDDGLAAPGEIIRPHDIYINKESPKV 557
            KK+ A  QKY N   DRI+RPQR G DAE+MQILDDDG+AAPGEIIRP+D+YINK+ P  
Sbjct: 797  KKIVATCQKYGNDAVDRILRPQRTGPDAEKMQILDDDGIAAPGEIIRPNDVYINKQIPVD 856

Query: 556  IRGPVTSPAGLSDSDYKPSKQTYKGPEGETAVVDRVALCSDKNNNLCIKYMIRHTRRPEV 377
             R  +TSP  LSDS Y+P+++ +KGPEGET VVDRVALCSDKN NLCIKY+IRHTRRPE+
Sbjct: 857  TRDNITSP--LSDSQYRPAREYFKGPEGETQVVDRVALCSDKNGNLCIKYIIRHTRRPEL 914

Query: 376  GDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGSKAGV 197
            GDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGSKAGV
Sbjct: 915  GDKFSSRHGQKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTVGKMIELLGSKAGV 974

Query: 196  SSGRFHYGSAFGEPSGHADTVEAISETLVNHGFSYNGKDFLYSGITGMPLQAYIYMGPIY 17
             SGRFHYGSAFGE SGHAD VE IS TLV HGFSY+GKD LYSG++G PLQ Y++MGPIY
Sbjct: 975  CSGRFHYGSAFGERSGHADKVETISATLVKHGFSYSGKDLLYSGLSGEPLQTYVFMGPIY 1034

Query: 16   YQKLK 2
            YQKLK
Sbjct: 1035 YQKLK 1039