BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Catharanthus22_contig00009732
         (853 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAF79348.1|AC007887_7 F15O4.13 [Arabidopsis thaliana]              277   e-106
gb|AAP43914.1| integrase [Gossypium raimondii]                        283   e-106
gb|AAK51582.1|AC022352_18 Putative retroelement [Oryza sativa Ja...   263   e-101
gb|AAK94516.1| gag-pol polyprotein [Hordeum vulgare]                  258   e-100
gb|AAQ56338.1| putative gag-pol polyprotein [Oryza sativa Japoni...   261   e-100
gb|AAK94517.1| gag-pol polyprotein [Hordeum vulgare]                  258   3e-99
gb|AAW28578.1| Putative gag-pol polyprotein, identical [Solanum ...   292   9e-77
gb|AAW28577.1| Putative gag-pol polyprotein, identical [Solanum ...   291   2e-76
gb|AAP43919.1| integrase [Gossypium hirsutum]                         281   2e-73
gb|EOX94045.1| DNA/RNA polymerases superfamily protein, partial ...   214   6e-73
gb|EOY01158.1| DNA/RNA polymerases superfamily protein [Theobrom...   212   2e-72
gb|ABE60891.1| putative polyprotein [Oryza sativa Japonica Group]     278   2e-72
gb|AAT85159.1| unknown protein [Oryza sativa Japonica Group] gi|...   278   2e-72
ref|NP_001063540.1| Os09g0491900 [Oryza sativa Japonica Group] g...   275   2e-71
gb|EMJ09180.1| hypothetical protein PRUPE_ppa015715mg, partial [...   216   2e-71
ref|XP_006366953.1| PREDICTED: uncharacterized protein LOC102594...   274   3e-71
gb|EOX95569.1| DNA/RNA polymerases superfamily protein [Theobrom...   206   2e-70
emb|CAN77900.1| hypothetical protein VITISV_037350 [Vitis vinifera]   270   5e-70
gb|ABF97027.1| retrotransposon protein, putative, Ty3-gypsy subc...   270   5e-70
gb|AAK91332.1|AC090441_14 Putative gag-pol polyprotein [Oryza sa...   269   8e-70

>gb|AAF79348.1|AC007887_7 F15O4.13 [Arabidopsis thaliana]
          Length = 1887

 Score =  277 bits (709), Expect(2) = e-106
 Identities = 122/206 (59%), Positives = 162/206 (78%)
 Frame = -2

Query: 618  KILGFEMLKEMYSSDHDFKEIF*KCLLAPFGKYFLHEGFLYCEGRLCIPSCSTRILLVKE 439
            K+LGFE +K +Y++D DF++I+  C    FGKY+ H+GFL+ + RLCIP+ S R L ++E
Sbjct: 1331 KLLGFEHIKSLYANDSDFEKIYSSCEKFAFGKYYRHDGFLFYDNRLCIPNSSLRELFIRE 1390

Query: 438  AYCGGLMVHFGVTKTYEILHEHFVWPHLKRDVERFVGSCIECKKAKFRTLPHGVYTLLEV 259
            A+ GGLM HFGV+KT +++ +HF WPH+KRDVER    C  CK+AK ++ PHG+YT L +
Sbjct: 1391 AHGGGLMGHFGVSKTIKVMQDHFHWPHMKRDVERICERCPTCKQAKAKSQPHGLYTPLPI 1450

Query: 258  PKEPWVDISMDFILGLPRTSRGIDSIFVVVDRFSKMAHFIPCRISNDASHVASLFFTSIV 79
            P  PW DISMDF++GLPRT  G DSIFVVVDRFSKMAHFIPC  ++DA H+A+LFF  +V
Sbjct: 1451 PSHPWNDISMDFVVGLPRTRTGKDSIFVVVDRFSKMAHFIPCHKTDDAIHIANLFFREVV 1510

Query: 78   RFHGIPRSIVSDRDTKFLNHFWRVLW 1
            R HG+P++IVSDRDTKFL++FW+ LW
Sbjct: 1511 RLHGMPKTIVSDRDTKFLSYFWKTLW 1536



 Score =  136 bits (342), Expect(2) = e-106
 Identities = 62/79 (78%), Positives = 70/79 (88%)
 Frame = -3

Query: 851  IRTLKHCQHYLWPKEFVVHTDHEALKFLKGQHKLNRRHARWMEFIETFPYVIHYKKGKEN 672
            +R L+  QHYLWPKEFV+HTDHE+LK LKGQ KLN+RHARW+EFIETFPYVI YKKGK+N
Sbjct: 1253 VRALQTGQHYLWPKEFVIHTDHESLKHLKGQQKLNKRHARWVEFIETFPYVIKYKKGKDN 1312

Query: 671  VVADALSRRYTLLSTLQTK 615
            VVADALSRRY LLS+L  K
Sbjct: 1313 VVADALSRRYVLLSSLDAK 1331


>gb|AAP43914.1| integrase [Gossypium raimondii]
          Length = 340

 Score =  283 bits (723), Expect(2) = e-106
 Identities = 125/206 (60%), Positives = 160/206 (77%)
 Frame = -2

Query: 618 KILGFEMLKEMYSSDHDFKEIF*KCLLAPFGKYFLHEGFLYCEGRLCIPSCSTRILLVKE 439
           K+LGFE LK++Y++D DF  I+  C    F K++ H+G+L+   RLC+P CS R LLV+E
Sbjct: 110 KLLGFEYLKDLYATDSDFASIYDACEHGAFHKFYKHDGYLFQNNRLCLPKCSMRELLVRE 169

Query: 438 AYCGGLMVHFGVTKTYEILHEHFVWPHLKRDVERFVGSCIECKKAKFRTLPHGVYTLLEV 259
           A+ GGLM HFGVTKTY++LHEHF WP++++ VE+   +CI CK+ K   +PHG+YT L V
Sbjct: 170 AHSGGLMGHFGVTKTYDVLHEHFYWPNMRKLVEKICSTCITCKQDKSTVMPHGLYTPLPV 229

Query: 258 PKEPWVDISMDFILGLPRTSRGIDSIFVVVDRFSKMAHFIPCRISNDASHVASLFFTSIV 79
           P  PW DIS+DF++GLP T  G DSIFVVVDRFSKMAHFIPC  ++DA+HVA LFF  +V
Sbjct: 230 PSSPWTDISIDFVIGLPITKHGRDSIFVVVDRFSKMAHFIPCHKTDDATHVADLFFREVV 289

Query: 78  RFHGIPRSIVSDRDTKFLNHFWRVLW 1
           R HGIPR+IVSDRD KFL+HFW+VLW
Sbjct: 290 RLHGIPRTIVSDRDAKFLSHFWKVLW 315



 Score =  129 bits (324), Expect(2) = e-106
 Identities = 62/87 (71%), Positives = 72/87 (82%)
 Frame = -3

Query: 851 IRTLKHCQHYLWPKEFVVHTDHEALKFLKGQHKLNRRHARWMEFIETFPYVIHYKKGKEN 672
           +R L+  QHYL  KEFV+HTDHE+LK LKGQ KLN+RHARW+EFIE+FPY I YKKGK+N
Sbjct: 32  VRALEVWQHYLLRKEFVIHTDHESLKHLKGQGKLNKRHARWVEFIESFPYGIRYKKGKDN 91

Query: 671 VVADALSRRYTLLSTLQTKFWVLKCLK 591
           +VADALSRRYTLLSTL TK    + LK
Sbjct: 92  IVADALSRRYTLLSTLHTKLLGFEYLK 118


>gb|AAK51582.1|AC022352_18 Putative retroelement [Oryza sativa Japonica Group]
            gi|31431012|gb|AAP52850.1| retrotransposon protein,
            putative, Ty3-gypsy subclass [Oryza sativa Japonica
            Group]
          Length = 2447

 Score =  263 bits (672), Expect(2) = e-101
 Identities = 122/207 (58%), Positives = 153/207 (73%), Gaps = 1/207 (0%)
 Frame = -2

Query: 618  KILGFEMLKEMYSSDHDFKEIF*KCLLA-PFGKYFLHEGFLYCEGRLCIPSCSTRILLVK 442
            KI G E +K+ Y+ D DF ++   C     + K+ +++GF++   +LCIP+ S R+LL++
Sbjct: 1139 KIFGLETIKDQYAHDADFNDVLLHCKDGRTWNKFVINDGFVFRANKLCIPASSVRLLLLQ 1198

Query: 441  EAYCGGLMVHFGVTKTYEILHEHFVWPHLKRDVERFVGSCIECKKAKFRTLPHGVYTLLE 262
            EA+ GGLM HFG  KT++IL  HF WP ++RDV RFV  C  C+KAK R  PHG+Y  L 
Sbjct: 1199 EAHGGGLMGHFGAKKTHDILASHFFWPQMRRDVGRFVARCATCQKAKSRLHPHGLYMPLP 1258

Query: 261  VPKEPWVDISMDFILGLPRTSRGIDSIFVVVDRFSKMAHFIPCRISNDASHVASLFFTSI 82
            VP  PW DISMDF+LGLPRT RG DSIFVVVDRFSKMAHFIPC  ++DASH+A LFF  I
Sbjct: 1259 VPTVPWEDISMDFVLGLPRTKRGRDSIFVVVDRFSKMAHFIPCHKTDDASHIADLFFREI 1318

Query: 81   VRFHGIPRSIVSDRDTKFLNHFWRVLW 1
            VR HG+P +IVSDRDTKFL+HFWR LW
Sbjct: 1319 VRLHGVPNTIVSDRDTKFLSHFWRTLW 1345



 Score =  131 bits (330), Expect(2) = e-101
 Identities = 58/87 (66%), Positives = 75/87 (86%)
 Frame = -3

Query: 851  IRTLKHCQHYLWPKEFVVHTDHEALKFLKGQHKLNRRHARWMEFIETFPYVIHYKKGKEN 672
            +RTL+  QHYLWPKEFV+H+DHE+LK ++ Q KLNRRHA+W+EFIE+FPYVI +KKGKEN
Sbjct: 1061 VRTLETWQHYLWPKEFVIHSDHESLKHIRSQGKLNRRHAKWVEFIESFPYVIKHKKGKEN 1120

Query: 671  VVADALSRRYTLLSTLQTKFWVLKCLK 591
            ++ADALSRRYTLL+ L  K + L+ +K
Sbjct: 1121 IIADALSRRYTLLTQLDYKIFGLETIK 1147



 Score =  139 bits (350), Expect = 1e-30
 Identities = 70/170 (41%), Positives = 105/170 (61%), Gaps = 2/170 (1%)
 Frame = -2

Query: 507  GFLYCEGRLCIPSC-STRILLVKEAYCGGLMVHFGVTKTYEILHEHFVWPHLKRDVERFV 331
            G L+   R+C+P     + L+++EA+     +H G TK Y  L E + W  +KR++  FV
Sbjct: 1997 GTLWNRNRVCVPDVRELKQLILQEAHESPYSIHPGSTKMYLDLKEKYWWVSMKREIAEFV 2056

Query: 330  GSCIECKKAKFR-TLPHGVYTLLEVPKEPWVDISMDFILGLPRTSRGIDSIFVVVDRFSK 154
              C  C++ K     P G+   L+VP+  W +I MDFI GLP+T  G DSI+VVVDR +K
Sbjct: 2057 ALCDVCQRVKAEHQRPAGLLQPLQVPEWKWDEIGMDFITGLPKTQGGYDSIWVVVDRLTK 2116

Query: 153  MAHFIPCRISNDASHVASLFFTSIVRFHGIPRSIVSDRDTKFLNHFWRVL 4
            +A FIP + +   + +A L+F  IV  HG+P+ IVSDR+++F +HFW+ L
Sbjct: 2117 VARFIPVKTTYGGNKLAELYFARIVSLHGVPKKIVSDRESQFTSHFWKKL 2166



 Score = 67.4 bits (163), Expect = 6e-09
 Identities = 32/69 (46%), Positives = 44/69 (63%)
 Frame = -3

Query: 851  IRTLKHCQHYLWPKEFVVHTDHEALKFLKGQHKLNRRHARWMEFIETFPYVIHYKKGKEN 672
            +  LK  +HYL      ++TDH++LK++  Q  LN R  RW+E I+ +   IHY  GK N
Sbjct: 1853 VHALKIWRHYLIGNRCEIYTDHKSLKYIFTQSDLNLRQRRWLELIKDYDVGIHYHPGKAN 1912

Query: 671  VVADALSRR 645
            VVADALSR+
Sbjct: 1913 VVADALSRK 1921


>gb|AAK94516.1| gag-pol polyprotein [Hordeum vulgare]
          Length = 1720

 Score =  258 bits (658), Expect(2) = e-100
 Identities = 120/207 (57%), Positives = 151/207 (72%), Gaps = 1/207 (0%)
 Frame = -2

Query: 618  KILGFEMLKEMYSSDHDFKEIF*KCLLA-PFGKYFLHEGFLYCEGRLCIPSCSTRILLVK 442
            KI G E +K+ Y  D DFK++   C     + K+ ++ GF++   +LCIP+ S R+LL++
Sbjct: 1198 KIFGLETIKDQYVHDADFKDVLENCREGRTWNKFIINNGFVFRANKLCIPASSIRLLLLQ 1257

Query: 441  EAYCGGLMVHFGVTKTYEILHEHFVWPHLKRDVERFVGSCIECKKAKFRTLPHGVYTLLE 262
            EA+ GGLM HFGV K  ++L  HF WP ++RDVERFV  C  C+KAK R  PHG+Y  L 
Sbjct: 1258 EAHGGGLMGHFGVKKMEDVLATHFFWPRMRRDVERFVARCTTCQKAKSRLNPHGLYMPLP 1317

Query: 261  VPKEPWVDISMDFILGLPRTSRGIDSIFVVVDRFSKMAHFIPCRISNDASHVASLFFTSI 82
            VP  PW DISMDF+LGLPRT +G DSIFVVVDRFSKMAHFIPC  S+DA++VA LFF  I
Sbjct: 1318 VPSVPWEDISMDFVLGLPRTKKGRDSIFVVVDRFSKMAHFIPCHKSDDAANVADLFFREI 1377

Query: 81   VRFHGIPRSIVSDRDTKFLNHFWRVLW 1
            +R HG+P +IVSDRD KFL+HFWR LW
Sbjct: 1378 IRLHGVPNTIVSDRDAKFLSHFWRCLW 1404



 Score =  134 bits (336), Expect(2) = e-100
 Identities = 60/87 (68%), Positives = 75/87 (86%)
 Frame = -3

Query: 851  IRTLKHCQHYLWPKEFVVHTDHEALKFLKGQHKLNRRHARWMEFIETFPYVIHYKKGKEN 672
            +RTL+  QHYLWPKEFV+H+DHE+LK +K Q KLNRRHA+W+EFIETFPYVI +KKGK+N
Sbjct: 1120 VRTLETWQHYLWPKEFVIHSDHESLKHIKSQAKLNRRHAKWVEFIETFPYVIKHKKGKDN 1179

Query: 671  VVADALSRRYTLLSTLQTKFWVLKCLK 591
            V+ADALSRRYT+LS L  K + L+ +K
Sbjct: 1180 VIADALSRRYTMLSQLDFKIFGLETIK 1206


>gb|AAQ56338.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
          Length = 1619

 Score =  261 bits (668), Expect(2) = e-100
 Identities = 121/207 (58%), Positives = 152/207 (73%), Gaps = 1/207 (0%)
 Frame = -2

Query: 618  KILGFEMLKEMYSSDHDFKEIF*KCLLA-PFGKYFLHEGFLYCEGRLCIPSCSTRILLVK 442
            KI G E +K+ Y+ D DF ++   C     + K+ +++GF++   +LCIP+ S R+LL++
Sbjct: 1118 KIFGLETIKDQYAHDADFNDVLLHCKDGRTWNKFVINDGFVFRANKLCIPASSVRLLLLQ 1177

Query: 441  EAYCGGLMVHFGVTKTYEILHEHFVWPHLKRDVERFVGSCIECKKAKFRTLPHGVYTLLE 262
            EA+ GGLM HFG  KT++IL  HF WP ++RDV RFV  C  C+KAK R  PHG+Y  L 
Sbjct: 1178 EAHGGGLMGHFGAKKTHDILASHFFWPQMRRDVGRFVARCATCQKAKSRLHPHGLYMPLP 1237

Query: 261  VPKEPWVDISMDFILGLPRTSRGIDSIFVVVDRFSKMAHFIPCRISNDASHVASLFFTSI 82
            VP  PW DISMDF+LGLPRT RG DSIFVVVDRFSKM HFIPC  ++DASH+A LFF  I
Sbjct: 1238 VPTVPWEDISMDFVLGLPRTKRGRDSIFVVVDRFSKMVHFIPCHKTDDASHIADLFFREI 1297

Query: 81   VRFHGIPRSIVSDRDTKFLNHFWRVLW 1
            VR HG+P +IVSDRDTKFL+HFWR LW
Sbjct: 1298 VRLHGVPNTIVSDRDTKFLSHFWRTLW 1324



 Score =  129 bits (325), Expect(2) = e-100
 Identities = 57/87 (65%), Positives = 75/87 (86%)
 Frame = -3

Query: 851  IRTLKHCQHYLWPKEFVVHTDHEALKFLKGQHKLNRRHARWMEFIETFPYVIHYKKGKEN 672
            +RTL+  QHYLWPKEFV+H+DHE+LK ++ Q KLNRRHA+W+EFIE+FPYVI +KKGKEN
Sbjct: 1040 VRTLETWQHYLWPKEFVIHSDHESLKHIRSQGKLNRRHAKWVEFIESFPYVIKHKKGKEN 1099

Query: 671  VVADALSRRYTLLSTLQTKFWVLKCLK 591
            ++A+ALSRRYTLL+ L  K + L+ +K
Sbjct: 1100 IIANALSRRYTLLTQLDYKIFGLETIK 1126


>gb|AAK94517.1| gag-pol polyprotein [Hordeum vulgare]
          Length = 1717

 Score =  258 bits (658), Expect(2) = 3e-99
 Identities = 120/207 (57%), Positives = 151/207 (72%), Gaps = 1/207 (0%)
 Frame = -2

Query: 618  KILGFEMLKEMYSSDHDFKEIF*KCLLA-PFGKYFLHEGFLYCEGRLCIPSCSTRILLVK 442
            KI G E +K+ Y  D DFK++   C     + K+ ++ GF++   +LCIP+ S R+LL++
Sbjct: 1195 KIFGLETIKDQYVHDADFKDVLENCREGRTWNKFIINNGFVFRANKLCIPASSIRLLLLQ 1254

Query: 441  EAYCGGLMVHFGVTKTYEILHEHFVWPHLKRDVERFVGSCIECKKAKFRTLPHGVYTLLE 262
            EA+ GGLM HFGV K  ++L  HF WP ++RDVERFV  C  C+KAK R  PHG+Y  L 
Sbjct: 1255 EAHGGGLMGHFGVKKMEDVLATHFFWPRMRRDVERFVARCTTCQKAKSRLNPHGLYMPLP 1314

Query: 261  VPKEPWVDISMDFILGLPRTSRGIDSIFVVVDRFSKMAHFIPCRISNDASHVASLFFTSI 82
            VP  PW DISMDF+LGLPRT +G DSIFVVVDRFSKMAHFIPC  S+DA++VA LFF  I
Sbjct: 1315 VPSVPWEDISMDFVLGLPRTKKGRDSIFVVVDRFSKMAHFIPCHKSDDAANVADLFFREI 1374

Query: 81   VRFHGIPRSIVSDRDTKFLNHFWRVLW 1
            +R HG+P +IVSDRD KFL+HFWR LW
Sbjct: 1375 IRLHGVPNTIVSDRDAKFLSHFWRCLW 1401



 Score =  132 bits (331), Expect(2) = 3e-99
 Identities = 60/87 (68%), Positives = 74/87 (85%)
 Frame = -3

Query: 851  IRTLKHCQHYLWPKEFVVHTDHEALKFLKGQHKLNRRHARWMEFIETFPYVIHYKKGKEN 672
            +RTL+  QHYLWPKEFV+H+DHE+LK +K Q KLNRRHA+W+EFIETFPYVI  KKGK+N
Sbjct: 1117 VRTLETWQHYLWPKEFVIHSDHESLKHIKSQAKLNRRHAKWVEFIETFPYVIKDKKGKDN 1176

Query: 671  VVADALSRRYTLLSTLQTKFWVLKCLK 591
            V+ADALSRRYT+LS L  K + L+ +K
Sbjct: 1177 VIADALSRRYTMLSQLDFKIFGLETIK 1203


>gb|AAW28578.1| Putative gag-pol polyprotein, identical [Solanum demissum]
          Length = 1588

 Score =  292 bits (748), Expect = 9e-77
 Identities = 133/208 (63%), Positives = 165/208 (79%)
 Frame = -2

Query: 624  SNKILGFEMLKEMYSSDHDFKEIF*KCLLAPFGKYFLHEGFLYCEGRLCIPSCSTRILLV 445
            ++K+LGF+ +K +Y++D DF EIF +C L PF K+ L + FL+ E +LC+P+CS R L V
Sbjct: 1091 TSKLLGFDQIKFLYANDSDFGEIFAECKLGPFEKFNLQDEFLFKENKLCVPNCSLRELFV 1150

Query: 444  KEAYCGGLMVHFGVTKTYEILHEHFVWPHLKRDVERFVGSCIECKKAKFRTLPHGVYTLL 265
            +EA+CGGLM HFGV KT EIL EHF WP +++DVE+    C+ECK+AK RTLPHG+YT L
Sbjct: 1151 REAHCGGLMGHFGVPKTLEILSEHFYWPSMRKDVEKVCSYCLECKQAKSRTLPHGLYTPL 1210

Query: 264  EVPKEPWVDISMDFILGLPRTSRGIDSIFVVVDRFSKMAHFIPCRISNDASHVASLFFTS 85
             V   PW+DISMDFILGLPRT  G DSIFVVVDRFSKMA FIPC+ +NDASHVA LF   
Sbjct: 1211 PVSNSPWIDISMDFILGLPRTKYGKDSIFVVVDRFSKMARFIPCKKTNDASHVADLFVKE 1270

Query: 84   IVRFHGIPRSIVSDRDTKFLNHFWRVLW 1
            +V+ HGIPR+IVSDRD KFL+HFWR+LW
Sbjct: 1271 VVKLHGIPRTIVSDRDAKFLSHFWRILW 1298



 Score = 84.7 bits (208), Expect = 4e-14
 Identities = 51/115 (44%), Positives = 68/115 (59%), Gaps = 2/115 (1%)
 Frame = -3

Query: 761  QHKLNRRHARWMEFIETFPYVIHYKKGKENVVADALSRRYTLLSTLQTKFWVLKCLKKCI 582
            Q KL+RRHA+W+EFIETFPYVI YK+GKENVVADALSRRY L+STL +K      +K   
Sbjct: 1045 QGKLSRRHAKWVEFIETFPYVIAYKQGKENVVADALSRRYVLISTLTSKLLGFDQIKFLY 1104

Query: 581  LVIMTLRKFFRNAY*HLLENIFCMKDFFIVKVD--CAYHLVLLEFYLSKKHIVGV 423
                   + F        E  F ++D F+ K +  C  +  L E ++ + H  G+
Sbjct: 1105 ANDSDFGEIFAECKLGPFEK-FNLQDEFLFKENKLCVPNCSLRELFVREAHCGGL 1158


>gb|AAW28577.1| Putative gag-pol polyprotein, identical [Solanum demissum]
          Length = 1588

 Score =  291 bits (745), Expect = 2e-76
 Identities = 133/208 (63%), Positives = 165/208 (79%)
 Frame = -2

Query: 624  SNKILGFEMLKEMYSSDHDFKEIF*KCLLAPFGKYFLHEGFLYCEGRLCIPSCSTRILLV 445
            ++K+LGF+ +K +Y++D DF EIF +C L PF K+ L + FL+ E +LC+P+CS R L V
Sbjct: 1091 TSKLLGFDQIKFLYANDSDFGEIFAECKLGPFEKFNLQDEFLFKENKLCVPNCSLRELFV 1150

Query: 444  KEAYCGGLMVHFGVTKTYEILHEHFVWPHLKRDVERFVGSCIECKKAKFRTLPHGVYTLL 265
            +EA+CGGLM HFGV KT EIL EHF WP +++DVE+    C+ECK+AK RTLPHG+YT L
Sbjct: 1151 REAHCGGLMGHFGVPKTLEILSEHFYWPSMRKDVEKVCSYCLECKQAKSRTLPHGLYTPL 1210

Query: 264  EVPKEPWVDISMDFILGLPRTSRGIDSIFVVVDRFSKMAHFIPCRISNDASHVASLFFTS 85
             V   PW+DISMDFILGLPRT  G DSIFVVVDRFSKMA FIPC+ +NDASHVA LF   
Sbjct: 1211 PVSNFPWIDISMDFILGLPRTKYGKDSIFVVVDRFSKMARFIPCKKTNDASHVADLFVKE 1270

Query: 84   IVRFHGIPRSIVSDRDTKFLNHFWRVLW 1
            +V+ HGIPR+IVSDRD KFL+HFWR+LW
Sbjct: 1271 VVKLHGIPRTIVSDRDAKFLSHFWRILW 1298



 Score = 84.7 bits (208), Expect = 4e-14
 Identities = 51/115 (44%), Positives = 68/115 (59%), Gaps = 2/115 (1%)
 Frame = -3

Query: 761  QHKLNRRHARWMEFIETFPYVIHYKKGKENVVADALSRRYTLLSTLQTKFWVLKCLKKCI 582
            Q KL+RRHA+W+EFIETFPYVI YK+GKENVVADALSRRY L+STL +K      +K   
Sbjct: 1045 QGKLSRRHAKWVEFIETFPYVIAYKQGKENVVADALSRRYVLISTLTSKLLGFDQIKFLY 1104

Query: 581  LVIMTLRKFFRNAY*HLLENIFCMKDFFIVKVD--CAYHLVLLEFYLSKKHIVGV 423
                   + F        E  F ++D F+ K +  C  +  L E ++ + H  G+
Sbjct: 1105 ANDSDFGEIFAECKLGPFEK-FNLQDEFLFKENKLCVPNCSLRELFVREAHCGGL 1158


>gb|AAP43919.1| integrase [Gossypium hirsutum]
          Length = 334

 Score =  281 bits (720), Expect = 2e-73
 Identities = 131/215 (60%), Positives = 162/215 (75%), Gaps = 1/215 (0%)
 Frame = -2

Query: 642 YSLIHPSN-KILGFEMLKEMYSSDHDFKEIF*KCLLAPFGKYFLHEGFLYCEGRLCIPSC 466
           Y+LI   N K+LGFE +KE+Y  D DF  I+  C    F K++L +G L+   RLCIP C
Sbjct: 101 YTLITTLNAKVLGFEHIKELYDDDTDFSHIYKNCGHTAFEKFYLVDGLLFRLNRLCIPKC 160

Query: 465 STRILLVKEAYCGGLMVHFGVTKTYEILHEHFVWPHLKRDVERFVGSCIECKKAKFRTLP 286
           S R LL+ EA+ GGLM HFGV KT +IL EHF WPH+K+DVE+    CI CK+AK + + 
Sbjct: 161 SMRELLIHEAHSGGLMGHFGVAKTLDILQEHFHWPHMKKDVEKVCSKCITCKQAKSKVML 220

Query: 285 HGVYTLLEVPKEPWVDISMDFILGLPRTSRGIDSIFVVVDRFSKMAHFIPCRISNDASHV 106
           HG+YT L +P  PWVD+SMDFILGLPRT +G DSIFVVVDRFSKM+HFIPC  ++DA+HV
Sbjct: 221 HGLYTPLPIPTSPWVDLSMDFILGLPRTKKGRDSIFVVVDRFSKMSHFIPCHKTDDATHV 280

Query: 105 ASLFFTSIVRFHGIPRSIVSDRDTKFLNHFWRVLW 1
           A LFF  +VR HGIP++IVSDRD KFL+HFW+VLW
Sbjct: 281 ADLFFKEVVRLHGIPKTIVSDRDVKFLSHFWKVLW 315



 Score =  123 bits (308), Expect = 1e-25
 Identities = 56/79 (70%), Positives = 68/79 (86%)
 Frame = -3

Query: 851 IRTLKHCQHYLWPKEFVVHTDHEALKFLKGQHKLNRRHARWMEFIETFPYVIHYKKGKEN 672
           +R L+  QHYL P EFV+HTDHE+LK+LKGQ KL++RHARW+EFIETFPY+I YK G +N
Sbjct: 32  VRALQVWQHYLLPNEFVIHTDHESLKWLKGQGKLSKRHARWVEFIETFPYMIQYKIGNDN 91

Query: 671 VVADALSRRYTLLSTLQTK 615
           VVADALSRRYTL++TL  K
Sbjct: 92  VVADALSRRYTLITTLNAK 110


>gb|EOX94045.1| DNA/RNA polymerases superfamily protein, partial [Theobroma cacao]
          Length = 624

 Score =  214 bits (545), Expect(2) = 6e-73
 Identities = 108/211 (51%), Positives = 136/211 (64%), Gaps = 3/211 (1%)
 Frame = -2

Query: 624  SNKILGFEMLKEMYSSDHDFKEIF*KC---LLAPFGKYFLHEGFLYCEGRLCIPSCSTRI 454
            S ++ GFE LK  YSSD  F +I       L A    Y LHE +L+   +LCIP  S R 
Sbjct: 411  STQVTGFEELKNQYSSDSYFSKIIADLQGSLQAENLPYRLHEDYLFKGNQLCIPEGSLRE 470

Query: 453  LLVKEAYCGGLMVHFGVTKTYEILHEHFVWPHLKRDVERFVGSCIECKKAKFRTLPHGVY 274
             +++E +  GL  HFG  KT  ++ + + WP ++RDVER V  C  C   K      G+Y
Sbjct: 471  QIIRELHGNGLGGHFGRDKTLAMVADRYYWPKMRRDVERLVKRCPACLFGKGSAQNTGLY 530

Query: 273  TLLEVPKEPWVDISMDFILGLPRTSRGIDSIFVVVDRFSKMAHFIPCRISNDASHVASLF 94
              L  P  PW+ +SMDF+LGLP+T++G DSIFVVVDRFSKMAHFIPC  ++DA+H+A LF
Sbjct: 531  VPLPEPDAPWIHLSMDFVLGLPKTAKGFDSIFVVVDRFSKMAHFIPCFRTSDATHIAELF 590

Query: 93   FTSIVRFHGIPRSIVSDRDTKFLNHFWRVLW 1
            F  IVR HGIP SIVSDRD KF+ HFWR LW
Sbjct: 591  FREIVRLHGIPTSIVSDRDVKFMGHFWRTLW 621



 Score = 87.8 bits (216), Expect(2) = 6e-73
 Identities = 37/79 (46%), Positives = 56/79 (70%)
 Frame = -3

Query: 851 IRTLKHCQHYLWPKEFVVHTDHEALKFLKGQHKLNRRHARWMEFIETFPYVIHYKKGKEN 672
           +R ++H QHYL  +EF V++DH+AL++L  Q KL+ +HA+W  F+  F + + YK G+ N
Sbjct: 335 VRAIRHWQHYLAYREFAVYSDHQALRYLHSQKKLSNQHAKWSSFLNEFNFSLKYKSGQSN 394

Query: 671 VVADALSRRYTLLSTLQTK 615
            VADALSRR  +LS + T+
Sbjct: 395 TVADALSRRCKMLSVMSTQ 413


>gb|EOY01158.1| DNA/RNA polymerases superfamily protein [Theobroma cacao]
          Length = 786

 Score =  212 bits (540), Expect(2) = 2e-72
 Identities = 107/211 (50%), Positives = 136/211 (64%), Gaps = 3/211 (1%)
 Frame = -2

Query: 624  SNKILGFEMLKEMYSSDHDFKEIF*KC---LLAPFGKYFLHEGFLYCEGRLCIPSCSTRI 454
            S ++ GFE LK  YSSD  F +I       L A    Y LHE +L+   +LCIP  S R 
Sbjct: 411  STQVTGFEELKNQYSSDSYFSKIIADLQGSLQAENLPYRLHEDYLFKGNQLCIPEGSLRE 470

Query: 453  LLVKEAYCGGLMVHFGVTKTYEILHEHFVWPHLKRDVERFVGSCIECKKAKFRTLPHGVY 274
             +++E +  GL  HFG  KT  ++ + + WP ++RDVER V  C  C   K      G+Y
Sbjct: 471  QIIRELHGNGLGGHFGRDKTLAMVADRYYWPKMRRDVERLVKRCPACLFGKGSAQNTGLY 530

Query: 273  TLLEVPKEPWVDISMDFILGLPRTSRGIDSIFVVVDRFSKMAHFIPCRISNDASHVASLF 94
              L  P  PW+ +SMDF+LGLP+T++G DSIFVVVDRFSKMAHFIPC  +++A+H+A LF
Sbjct: 531  VPLPEPDAPWIHLSMDFVLGLPKTAKGFDSIFVVVDRFSKMAHFIPCFRTSNATHIAELF 590

Query: 93   FTSIVRFHGIPRSIVSDRDTKFLNHFWRVLW 1
            F  IVR HGIP SIVSDRD KF+ HFWR LW
Sbjct: 591  FREIVRLHGIPTSIVSDRDVKFMGHFWRTLW 621



 Score = 87.8 bits (216), Expect(2) = 2e-72
 Identities = 37/79 (46%), Positives = 56/79 (70%)
 Frame = -3

Query: 851 IRTLKHCQHYLWPKEFVVHTDHEALKFLKGQHKLNRRHARWMEFIETFPYVIHYKKGKEN 672
           +R ++H QHYL  +EF V++DH+AL++L  Q KL+ +HA+W  F+  F + + YK G+ N
Sbjct: 335 VRAIRHWQHYLAYREFAVYSDHQALRYLHSQKKLSNQHAKWSSFLNEFNFSLKYKSGQSN 394

Query: 671 VVADALSRRYTLLSTLQTK 615
            VADALSRR  +LS + T+
Sbjct: 395 TVADALSRRCKMLSVMSTQ 413


>gb|ABE60891.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1713

 Score =  278 bits (710), Expect = 2e-72
 Identities = 126/207 (60%), Positives = 160/207 (77%), Gaps = 1/207 (0%)
 Frame = -2

Query: 618  KILGFEMLKEMYSSDHDFKEIF*KCLLAP-FGKYFLHEGFLYCEGRLCIPSCSTRILLVK 442
            K+ G E +KE+YS+D DF E + KC     + KY +H+GFL+   +LC+P CS R+LL++
Sbjct: 1142 KVTGIESIKELYSADLDFSEPYAKCTAGKGWEKYHIHDGFLFRANKLCVPHCSVRLLLLQ 1201

Query: 441  EAYCGGLMVHFGVTKTYEILHEHFVWPHLKRDVERFVGSCIECKKAKFRTLPHGVYTLLE 262
            E + GGLM HFG  KTY++L +HF WP ++RDV+R V  C+ C KAK +  PHG+YT L 
Sbjct: 1202 ETHAGGLMGHFGWRKTYDMLADHFYWPKMRRDVQRLVQRCVTCHKAKSKLNPHGLYTPLP 1261

Query: 261  VPKEPWVDISMDFILGLPRTSRGIDSIFVVVDRFSKMAHFIPCRISNDASHVASLFFTSI 82
            VP  PW DISMDF+LGLPRT RG DSIFVVVDRFSKMAHFIPC  S+DASH+ASLFF+ I
Sbjct: 1262 VPSAPWEDISMDFVLGLPRTKRGRDSIFVVVDRFSKMAHFIPCHKSDDASHIASLFFSEI 1321

Query: 81   VRFHGIPRSIVSDRDTKFLNHFWRVLW 1
            VR HG+P++IVSDRDTKFL++FW+ LW
Sbjct: 1322 VRLHGMPKTIVSDRDTKFLSYFWKTLW 1348



 Score =  133 bits (334), Expect = 9e-29
 Identities = 59/88 (67%), Positives = 75/88 (85%)
 Frame = -3

Query: 851  IRTLKHCQHYLWPKEFVVHTDHEALKFLKGQHKLNRRHARWMEFIETFPYVIHYKKGKEN 672
            +R L+  QHYLWPKEFV+H+DHEALK+LKGQ KLNRRHA+W+EFIETFPYV+ YKKGKEN
Sbjct: 1064 VRALETWQHYLWPKEFVIHSDHEALKYLKGQAKLNRRHAKWVEFIETFPYVVKYKKGKEN 1123

Query: 671  VVADALSRRYTLLSTLQTKFWVLKCLKK 588
            +VADALSR+  LL+ L+ K   ++ +K+
Sbjct: 1124 IVADALSRKNVLLNQLEVKVTGIESIKE 1151


>gb|AAT85159.1| unknown protein [Oryza sativa Japonica Group]
           gi|52353557|gb|AAU44123.1| putative polyprotein [Oryza
           sativa Japonica Group]
          Length = 681

 Score =  278 bits (710), Expect = 2e-72
 Identities = 126/207 (60%), Positives = 160/207 (77%), Gaps = 1/207 (0%)
 Frame = -2

Query: 618 KILGFEMLKEMYSSDHDFKEIF*KCLLAP-FGKYFLHEGFLYCEGRLCIPSCSTRILLVK 442
           K+ G E +KE+YS+D DF E + KC     + KY +H+GFL+   +LC+P CS R+LL++
Sbjct: 110 KVTGIESIKELYSADLDFSEPYAKCTAGKGWEKYHIHDGFLFRANKLCVPHCSVRLLLLQ 169

Query: 441 EAYCGGLMVHFGVTKTYEILHEHFVWPHLKRDVERFVGSCIECKKAKFRTLPHGVYTLLE 262
           E + GGLM HFG  KTY++L +HF WP ++RDV+R V  C+ C KAK +  PHG+YT L 
Sbjct: 170 ETHAGGLMGHFGWRKTYDMLADHFYWPKMRRDVQRLVQRCVTCHKAKSKLNPHGLYTPLP 229

Query: 261 VPKEPWVDISMDFILGLPRTSRGIDSIFVVVDRFSKMAHFIPCRISNDASHVASLFFTSI 82
           VP  PW DISMDF+LGLPRT RG DSIFVVVDRFSKMAHFIPC  S+DASH+ASLFF+ I
Sbjct: 230 VPSAPWEDISMDFVLGLPRTKRGRDSIFVVVDRFSKMAHFIPCHKSDDASHIASLFFSEI 289

Query: 81  VRFHGIPRSIVSDRDTKFLNHFWRVLW 1
           VR HG+P++IVSDRDTKFL++FW+ LW
Sbjct: 290 VRLHGMPKTIVSDRDTKFLSYFWKTLW 316



 Score =  133 bits (334), Expect = 9e-29
 Identities = 59/88 (67%), Positives = 75/88 (85%)
 Frame = -3

Query: 851 IRTLKHCQHYLWPKEFVVHTDHEALKFLKGQHKLNRRHARWMEFIETFPYVIHYKKGKEN 672
           +R L+  QHYLWPKEFV+H+DHEALK+LKGQ KLNRRHA+W+EFIETFPYV+ YKKGKEN
Sbjct: 32  VRALETWQHYLWPKEFVIHSDHEALKYLKGQAKLNRRHAKWVEFIETFPYVVKYKKGKEN 91

Query: 671 VVADALSRRYTLLSTLQTKFWVLKCLKK 588
           +VADALSR+  LL+ L+ K   ++ +K+
Sbjct: 92  IVADALSRKNVLLNQLEVKVTGIESIKE 119


>ref|NP_001063540.1| Os09g0491900 [Oryza sativa Japonica Group]
           gi|113631773|dbj|BAF25454.1| Os09g0491900 [Oryza sativa
           Japonica Group]
          Length = 681

 Score =  275 bits (703), Expect = 2e-71
 Identities = 125/207 (60%), Positives = 159/207 (76%), Gaps = 1/207 (0%)
 Frame = -2

Query: 618 KILGFEMLKEMYSSDHDFKEIF*KCLLAP-FGKYFLHEGFLYCEGRLCIPSCSTRILLVK 442
           K+ G E +KE+Y +D DF E + KC     + KY +H+GFL+   +LC+P CS R+LL++
Sbjct: 110 KVPGIESIKELYPADLDFSEPYAKCTAGKGWEKYHIHDGFLFRANKLCVPHCSVRLLLLQ 169

Query: 441 EAYCGGLMVHFGVTKTYEILHEHFVWPHLKRDVERFVGSCIECKKAKFRTLPHGVYTLLE 262
           E + GGLM HFG  KTY++L +HF WP ++RDV+R V  C+ C KAK +  PHG+YT L 
Sbjct: 170 ETHAGGLMGHFGWRKTYDMLADHFYWPKMRRDVQRLVQRCVTCHKAKSKLNPHGLYTPLP 229

Query: 261 VPKEPWVDISMDFILGLPRTSRGIDSIFVVVDRFSKMAHFIPCRISNDASHVASLFFTSI 82
           VP  PW DISMDF+LGLPRT RG DSIFVVVDRFSKMAHFIPC  S+DASH+ASLFF+ I
Sbjct: 230 VPSAPWEDISMDFVLGLPRTKRGRDSIFVVVDRFSKMAHFIPCHKSDDASHIASLFFSEI 289

Query: 81  VRFHGIPRSIVSDRDTKFLNHFWRVLW 1
           VR HG+P++IVSDRDTKFL++FW+ LW
Sbjct: 290 VRLHGMPKTIVSDRDTKFLSYFWKTLW 316



 Score =  132 bits (332), Expect = 2e-28
 Identities = 59/88 (67%), Positives = 75/88 (85%)
 Frame = -3

Query: 851 IRTLKHCQHYLWPKEFVVHTDHEALKFLKGQHKLNRRHARWMEFIETFPYVIHYKKGKEN 672
           +R L+  QHYLWPKEFV+H+DHEALK+LKGQ KLNRRHA+W+EFIETFPYV+ YKKGKEN
Sbjct: 32  VRALETWQHYLWPKEFVIHSDHEALKYLKGQAKLNRRHAKWVEFIETFPYVVKYKKGKEN 91

Query: 671 VVADALSRRYTLLSTLQTKFWVLKCLKK 588
           +VADALSR+  LL+ L+ K   ++ +K+
Sbjct: 92  IVADALSRKNVLLNQLEVKVPGIESIKE 119


>gb|EMJ09180.1| hypothetical protein PRUPE_ppa015715mg, partial [Prunus persica]
          Length = 1445

 Score =  216 bits (550), Expect(2) = 2e-71
 Identities = 109/220 (49%), Positives = 143/220 (65%), Gaps = 4/220 (1%)
 Frame = -2

Query: 648  KVYSLIHPSN-KILGFEMLKEMYSSDHDFKEIF*KCLLAPFGKY---FLHEGFLYCEGRL 481
            +V +++H    ++ GF+ +K  YSS  DF  IF +       +Y      +GFL+   +L
Sbjct: 919  RVATILHTMTVQVTGFDRIKTEYSSCPDFGIIFHEVSNGNRREYVDFITRDGFLFRGTQL 978

Query: 480  CIPSCSTRILLVKEAYCGGLMVHFGVTKTYEILHEHFVWPHLKRDVERFVGSCIECKKAK 301
            CIP  S R  LV E + GGL  HFG  KT  ++ + F WP LKRDV   +  C  C+ AK
Sbjct: 979  CIPRTSLREFLVWELHGGGLAGHFGKDKTIALVEDRFYWPSLKRDVAHLISQCRTCQLAK 1038

Query: 300  FRTLPHGVYTLLEVPKEPWVDISMDFILGLPRTSRGIDSIFVVVDRFSKMAHFIPCRISN 121
             R    G+YT L +P  PW D+SMDF+LGLP+TSRG DSIFV+VDRFSKMAHF+PC  + 
Sbjct: 1039 ARKRNTGLYTPLPIPHTPWKDLSMDFVLGLPKTSRGYDSIFVIVDRFSKMAHFLPCAKNT 1098

Query: 120  DASHVASLFFTSIVRFHGIPRSIVSDRDTKFLNHFWRVLW 1
            DAS+VA LFF  +VR HG+P SIVSDRD KF+++FW+ LW
Sbjct: 1099 DASYVAKLFFKEVVRLHGLPVSIVSDRDVKFVSYFWKTLW 1138



 Score = 80.9 bits (198), Expect(2) = 2e-71
 Identities = 33/76 (43%), Positives = 56/76 (73%)
 Frame = -3

Query: 851  IRTLKHCQHYLWPKEFVVHTDHEALKFLKGQHKLNRRHARWMEFIETFPYVIHYKKGKEN 672
            ++ L++ Q+YL P EFV+++DH+ALK+L  Q  ++ RH +W E+++ F +V+ ++ G +N
Sbjct: 852  VQALRYWQYYLLPNEFVLYSDHQALKYLHSQRTISSRHVKWSEYLQIFTFVLRHRPGIDN 911

Query: 671  VVADALSRRYTLLSTL 624
             VADALSR  T+L T+
Sbjct: 912  KVADALSRVATILHTM 927


>ref|XP_006366953.1| PREDICTED: uncharacterized protein LOC102594328 [Solanum tuberosum]
          Length = 1191

 Score =  274 bits (701), Expect = 3e-71
 Identities = 132/233 (56%), Positives = 164/233 (70%), Gaps = 25/233 (10%)
 Frame = -2

Query: 624  SNKILGFEMLKEMYSSDHDFKEIF*KCLLAPFGKYFLHEGFLYCEGRLCIPSCSTRILLV 445
            ++K+LGF+ +K +Y++D DF EIF +C L PF K+ L + FL+ E +LC+P+CS R L V
Sbjct: 848  TSKLLGFDQIKFLYANDSDFGEIFAECKLGPFEKFNLQDEFLFKENKLCVPNCSLRELFV 907

Query: 444  KEAYCGGLMVHFGVTKTYEILHEHFVWPHLKRDVERFVGSCIECKKAKFRTLPHGVYTLL 265
            +EA+ GGLM HFGV KT EIL EHF WP +++DVE+    C+ECK+AK RTLPHG+YT L
Sbjct: 908  REAHYGGLMGHFGVPKTLEILSEHFYWPSMRKDVEKVCSYCLECKQAKSRTLPHGLYTPL 967

Query: 264  EVPKEPWVDIS-------------------------MDFILGLPRTSRGIDSIFVVVDRF 160
             V   PW+DIS                         MDFILGLPRT  G DSIFVVVDRF
Sbjct: 968  PVSNSPWIDISMDFILGLPRIYTPLPVFNTPWIDISMDFILGLPRTKYGKDSIFVVVDRF 1027

Query: 159  SKMAHFIPCRISNDASHVASLFFTSIVRFHGIPRSIVSDRDTKFLNHFWRVLW 1
            SKMA FIPC+ +NDASHVA LF   +V+ HGIPR+IVSDRD KFL+HFWR+LW
Sbjct: 1028 SKMARFIPCKKTNDASHVADLFVKEVVKLHGIPRTIVSDRDAKFLSHFWRILW 1080



 Score =  129 bits (323), Expect = 2e-27
 Identities = 71/145 (48%), Positives = 92/145 (63%), Gaps = 2/145 (1%)
 Frame = -3

Query: 851  IRTLKHCQHYLWPKEFVVHTDHEALKFLKGQHKLNRRHARWMEFIETFPYVIHYKKGKEN 672
            +R L   QHYLWP+EFVV TDHE+LK+LK Q KL+RRHA+W+EFIETFPYVI YK+GKEN
Sbjct: 772  VRALATWQHYLWPREFVVKTDHESLKYLKSQGKLSRRHAKWVEFIETFPYVIAYKQGKEN 831

Query: 671  VVADALSRRYTLLSTLQTKFWVLKCLKKCILVIMTLRKFFRNAY*HLLENIFCMKDFFIV 492
            VVADALSRRY L+STL +K      +K          + F        E  F ++D F+ 
Sbjct: 832  VVADALSRRYVLISTLTSKLLGFDQIKFLYANDSDFGEIFAECKLGPFEK-FNLQDEFLF 890

Query: 491  KVD--CAYHLVLLEFYLSKKHIVGV 423
            K +  C  +  L E ++ + H  G+
Sbjct: 891  KENKLCVPNCSLRELFVREAHYGGL 915


>gb|EOX95569.1| DNA/RNA polymerases superfamily protein [Theobroma cacao]
          Length = 1452

 Score =  206 bits (523), Expect(2) = 2e-70
 Identities = 105/211 (49%), Positives = 134/211 (63%), Gaps = 3/211 (1%)
 Frame = -2

Query: 624  SNKILGFEMLKEMYSSDHDFKEIF*KC---LLAPFGKYFLHEGFLYCEGRLCIPSCSTRI 454
            S ++ GFE LK  YSSD  F +I       L A    Y LHE +L+   +LCIP  S R 
Sbjct: 959  STQVTGFEELKNQYSSDSYFSKIIADLQGSLQAENLPYRLHEDYLFKGNQLCIPEGSLRE 1018

Query: 453  LLVKEAYCGGLMVHFGVTKTYEILHEHFVWPHLKRDVERFVGSCIECKKAKFRTLPHGVY 274
             +++E +  GL  HFG  KT  ++ + + WP ++RDVER V  C  C   K      G+Y
Sbjct: 1019 QIIRELHGNGLGGHFGRDKTLVMVADRYYWPKMRRDVERLVKRCPACLFGKGSAQNTGLY 1078

Query: 273  TLLEVPKEPWVDISMDFILGLPRTSRGIDSIFVVVDRFSKMAHFIPCRISNDASHVASLF 94
              L  P  PW+ +SMDF+LGLP+T++G DSIFVVVDRFSKMAHFIPC  ++DA+H+A LF
Sbjct: 1079 VPLPEPDAPWIHLSMDFVLGLPKTTKGFDSIFVVVDRFSKMAHFIPCFRTSDATHIAELF 1138

Query: 93   FTSIVRFHGIPRSIVSDRDTKFLNHFWRVLW 1
            F  IV  HGIP SIVSDR  KF+ +FWR LW
Sbjct: 1139 FREIVILHGIPTSIVSDRHVKFMGYFWRTLW 1169



 Score = 87.8 bits (216), Expect(2) = 2e-70
 Identities = 37/79 (46%), Positives = 56/79 (70%)
 Frame = -3

Query: 851  IRTLKHCQHYLWPKEFVVHTDHEALKFLKGQHKLNRRHARWMEFIETFPYVIHYKKGKEN 672
            +R ++H QHYL  +EF V++DH+AL++L  Q KL+ +HA+W  F+  F + + YK G+ N
Sbjct: 883  VRAIRHWQHYLAYREFAVYSDHQALRYLHSQKKLSNQHAKWSSFLNEFNFSLKYKSGQSN 942

Query: 671  VVADALSRRYTLLSTLQTK 615
             VADALSRR  +LS + T+
Sbjct: 943  TVADALSRRCKMLSVMSTQ 961


>emb|CAN77900.1| hypothetical protein VITISV_037350 [Vitis vinifera]
          Length = 1173

 Score =  270 bits (690), Expect = 5e-70
 Identities = 128/215 (59%), Positives = 161/215 (74%), Gaps = 1/215 (0%)
 Frame = -2

Query: 642  YSLIHPSN-KILGFEMLKEMYSSDHDFKEIF*KCLLAPFGKYFLHEGFLYCEGRLCIPSC 466
            Y+L+   N K+LGFE +KE+Y++D DF  ++  C    FGK++  +G+L+ E RLC+P+ 
Sbjct: 723  YALVSTLNAKLLGFEYVKELYANDDDFASVYGACEKVAFGKFYRLDGYLFRENRLCVPNS 782

Query: 465  STRILLVKEAYCGGLMVHFGVTKTYEILHEHFVWPHLKRDVERFVGSCIECKKAKFRTLP 286
            S R LLV+EA+ GGLM HFGV KT ++LHEH  WP +KRDVER    CI  + AK + LP
Sbjct: 783  SMRELLVREAHEGGLMGHFGVRKTLDVLHEHIFWPKMKRDVERACARCITYRHAKSKVLP 842

Query: 285  HGVYTLLEVPKEPWVDISMDFILGLPRTSRGIDSIFVVVDRFSKMAHFIPCRISNDASHV 106
            HG+YT L VP  PWVDISMDF+LGL R+  G DSIFVVVDRFSKM HFI C  ++DA+H+
Sbjct: 843  HGLYTTLLVPSAPWVDISMDFVLGLLRSRNGRDSIFVVVDRFSKMTHFISCHKTDDATHI 902

Query: 105  ASLFFTSIVRFHGIPRSIVSDRDTKFLNHFWRVLW 1
            A+LFF  IVR HGIPRSIVSDRD KFL+ FW+VLW
Sbjct: 903  ANLFFRKIVRLHGIPRSIVSDRDVKFLSCFWKVLW 937



 Score =  113 bits (283), Expect = 8e-23
 Identities = 53/79 (67%), Positives = 65/79 (82%)
 Frame = -3

Query: 824 YLWPKEFVVHTDHEALKFLKGQHKLNRRHARWMEFIETFPYVIHYKKGKENVVADALSRR 645
           + W K FV+HTDHE+LK+LKGQ KLNRRHA+W+EFIETFPYVI YK+GKEN+V DALSRR
Sbjct: 664 FKWGK-FVIHTDHESLKYLKGQGKLNRRHAKWVEFIETFPYVIKYKQGKENIVVDALSRR 722

Query: 644 YTLLSTLQTKFWVLKCLKK 588
           Y L+STL  K    + +K+
Sbjct: 723 YALVSTLNAKLLGFEYVKE 741


>gb|ABF97027.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 889

 Score =  270 bits (690), Expect = 5e-70
 Identities = 127/207 (61%), Positives = 155/207 (74%), Gaps = 1/207 (0%)
 Frame = -2

Query: 618  KILGFEMLKEMYSSDHDFKEIF*KCLLA-PFGKYFLHEGFLYCEGRLCIPSCSTRILLVK 442
            KI G E +KE Y+ D DFK++   C+    + K+ L  GF++   +LCIP+ S R+LL++
Sbjct: 480  KIFGLETIKEQYAHDDDFKDVLLNCMEGRTWNKFVLTNGFVFRANKLCIPASSVRMLLLQ 539

Query: 441  EAYCGGLMVHFGVTKTYEILHEHFVWPHLKRDVERFVGSCIECKKAKFRTLPHGVYTLLE 262
            EA+ GGLM HFGV KT +IL +HF WP ++RDVERFV  C  C+KAK R  PHG+Y  L 
Sbjct: 540  EAHGGGLMGHFGVKKTEDILADHFFWPKMRRDVERFVARCTTCQKAKSRLNPHGLYMPLP 599

Query: 261  VPKEPWVDISMDFILGLPRTSRGIDSIFVVVDRFSKMAHFIPCRISNDASHVASLFFTSI 82
            VP  PW DISMDF+LGLPRT +G DSIFVVVDRFSKMAHFIPC  S+DA+HVA LFF  I
Sbjct: 600  VPSVPWEDISMDFVLGLPRTKKGRDSIFVVVDRFSKMAHFIPCHKSDDATHVADLFFREI 659

Query: 81   VRFHGIPRSIVSDRDTKFLNHFWRVLW 1
            VR HG+P +IVSDRDTKFL+HFWR LW
Sbjct: 660  VRLHGVPNTIVSDRDTKFLSHFWRTLW 686



 Score =  130 bits (328), Expect = 5e-28
 Identities = 58/88 (65%), Positives = 75/88 (85%)
 Frame = -3

Query: 851 IRTLKHCQHYLWPKEFVVHTDHEALKFLKGQHKLNRRHARWMEFIETFPYVIHYKKGKEN 672
           +RTL+  QHYLWPKEFV+H+DHE+LK ++ Q KLNRRHA+W+EFIE+FPYVI +KKGKEN
Sbjct: 402 VRTLETWQHYLWPKEFVIHSDHESLKHIRSQAKLNRRHAKWVEFIESFPYVIKHKKGKEN 461

Query: 671 VVADALSRRYTLLSTLQTKFWVLKCLKK 588
           V+ADALSRRY +LS L  K + L+ +K+
Sbjct: 462 VIADALSRRYAMLSQLDFKIFGLETIKE 489


>gb|AAK91332.1|AC090441_14 Putative gag-pol polyprotein [Oryza sativa Japonica Group]
            gi|15217296|gb|AAK92640.1|AC079634_1 Putative
            retroelement [Oryza sativa Japonica Group]
            gi|31431373|gb|AAP53161.1| retrotransposon protein,
            putative, Ty3-gypsy subclass [Oryza sativa Japonica
            Group]
          Length = 1708

 Score =  269 bits (688), Expect = 8e-70
 Identities = 127/207 (61%), Positives = 154/207 (74%), Gaps = 1/207 (0%)
 Frame = -2

Query: 618  KILGFEMLKEMYSSDHDFKEIF*KCLLA-PFGKYFLHEGFLYCEGRLCIPSCSTRILLVK 442
            KI G E +KE Y+ D DFK++   C     + K+ L  GF++   +LCIP+ S R+LL++
Sbjct: 1167 KIFGLETIKEQYAHDDDFKDVLLNCKEGRTWNKFVLTNGFVFRANKLCIPASSVRMLLLQ 1226

Query: 441  EAYCGGLMVHFGVTKTYEILHEHFVWPHLKRDVERFVGSCIECKKAKFRTLPHGVYTLLE 262
            EA+ GGLM HFGV KT +IL +HF WP ++RDVERFV  C  C+KAK R  PHG+Y  L 
Sbjct: 1227 EAHGGGLMGHFGVKKTEDILADHFFWPKMRRDVERFVARCTTCQKAKLRLNPHGLYMPLP 1286

Query: 261  VPKEPWVDISMDFILGLPRTSRGIDSIFVVVDRFSKMAHFIPCRISNDASHVASLFFTSI 82
            VP  PW DISMDF+LGLPRT +G DSIFVVVDRFSKMAHFIPC  S+DA+HVA LFF  I
Sbjct: 1287 VPSVPWEDISMDFVLGLPRTKKGRDSIFVVVDRFSKMAHFIPCHKSDDATHVADLFFREI 1346

Query: 81   VRFHGIPRSIVSDRDTKFLNHFWRVLW 1
            VR HG+P +IVSDRDTKFL+HFWR LW
Sbjct: 1347 VRLHGVPNTIVSDRDTKFLSHFWRTLW 1373



 Score =  130 bits (328), Expect = 5e-28
 Identities = 58/88 (65%), Positives = 75/88 (85%)
 Frame = -3

Query: 851  IRTLKHCQHYLWPKEFVVHTDHEALKFLKGQHKLNRRHARWMEFIETFPYVIHYKKGKEN 672
            +RTL+  QHYLWPKEFV+H+DHE+LK ++ Q KLNRRHA+W+EFIE+FPYVI +KKGKEN
Sbjct: 1089 VRTLETWQHYLWPKEFVIHSDHESLKHIRSQAKLNRRHAKWVEFIESFPYVIKHKKGKEN 1148

Query: 671  VVADALSRRYTLLSTLQTKFWVLKCLKK 588
            V+ADALSRRY +LS L  K + L+ +K+
Sbjct: 1149 VIADALSRRYAMLSQLDFKIFGLETIKE 1176