BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Catharanthus22_contig00009730
         (666 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAM74412.1|AC120497_12 Putative retroelement [Oryza sativa Ja...   205   4e-70
emb|CAN84067.1| hypothetical protein VITISV_041979 [Vitis vinifera]   198   7e-70
emb|CAN80130.1| hypothetical protein VITISV_001989 [Vitis vinifera]   180   1e-65
emb|CAN68499.1| hypothetical protein VITISV_041099 [Vitis vinifera]   176   2e-61
ref|XP_006575965.1| PREDICTED: uncharacterized protein LOC102669...   206   9e-61
gb|ADP20179.1| gag-pol polyprotein [Silene latifolia]                 175   4e-58
gb|EOX94045.1| DNA/RNA polymerases superfamily protein, partial ...   177   5e-58
gb|EOY01158.1| DNA/RNA polymerases superfamily protein [Theobrom...   175   2e-57
ref|XP_006596896.1| PREDICTED: uncharacterized protein LOC102664...   227   2e-57
gb|AAU90169.1| putative polyprotein [Oryza sativa Japonica Group]     187   1e-56
gb|ADP20178.1| gag-pol polyprotein [Silene latifolia]                 167   2e-56
gb|AAW28578.1| Putative gag-pol polyprotein, identical [Solanum ...   222   9e-56
gb|EOY16699.1| Uncharacterized protein TCM_035549 [Theobroma cacao]   169   1e-55
gb|EOX95569.1| DNA/RNA polymerases superfamily protein [Theobrom...   169   2e-55
gb|AAW28577.1| Putative gag-pol polyprotein, identical [Solanum ...   221   2e-55
gb|AAQ56407.1| putative gag-pol polyprotein [Oryza sativa Japoni...   220   3e-55
gb|AAP43919.1| integrase [Gossypium hirsutum]                         220   3e-55
gb|EOX92840.1| DNA/RNA polymerases superfamily protein [Theobrom...   169   7e-55
gb|ABF97027.1| retrotransposon protein, putative, Ty3-gypsy subc...   219   8e-55
gb|AAQ56388.1| putative gag-pol polyprotein [Oryza sativa Japoni...   219   8e-55

>gb|AAM74412.1|AC120497_12 Putative retroelement [Oryza sativa Japonica Group]
          Length = 540

 Score =  205 bits (521), Expect(2) = 4e-70
 Identities = 92/133 (69%), Positives = 105/133 (78%)
 Frame = -1

Query: 399 KTYEILHEHVFWPHLKRDVERFVGSCIECKKAKSRTLPHGLYTPLEVPKEPWVDISMDFI 220
           KT ++L  H FWP +++D+ERFV  C  C+KAKSR  PHGLY PL VP  PW DISMDF+
Sbjct: 136 KTEDVLAMHFFWPRMRKDIERFVARCTTCQKAKSRLNPHGLYMPLPVPSIPWADISMDFV 195

Query: 219 LGLPRTSKGIDSIFVVVDRFSKMAHFIPCRKSDDASHVASLFFTWIVRFHGIPRSIVSDR 40
           LGLPRT +G DSIFVVVDRFSKMAHFIPC KSDDA H+A +FF  IVR HG+P +IVSD 
Sbjct: 196 LGLPRTKRGRDSIFVVVDRFSKMAHFIPCHKSDDAVHIADMFFHKIVRLHGMPSTIVSDS 255

Query: 39  DTKFLSHFWRVLW 1
           D KFLSHFWR LW
Sbjct: 256 DAKFLSHFWRTLW 268



 Score = 86.7 bits (213), Expect(2) = 4e-70
 Identities = 45/90 (50%), Positives = 56/90 (62%), Gaps = 1/90 (1%)
 Frame = -3

Query: 664 ADALSRRYTLLSTLQTKILGFEMLKEMYSSDHYFKEIFEKCLLA-PFGKYFLHEGFFYCE 488
           ADALSRRYT LS L  +I G E +KE Y+ D  F E+   C     + K+ ++ GF Y  
Sbjct: 46  ADALSRRYTFLSQLDCRIFGLESIKEQYALDPDFNEVMINCKEGRTWNKFVINGGFVYRA 105

Query: 487 GRLCISSCSTRILLVKEAHCGGLMGHFGVK 398
            RLCI   S R+LL++EAH GGL GHFG K
Sbjct: 106 NRLCIPVGSVRLLLIQEAHGGGLTGHFGAK 135


>emb|CAN84067.1| hypothetical protein VITISV_041979 [Vitis vinifera]
          Length = 364

 Score =  198 bits (503), Expect(2) = 7e-70
 Identities = 89/135 (65%), Positives = 107/135 (79%)
 Frame = -1

Query: 405 VSKTYEILHEHVFWPHLKRDVERFVGSCIECKKAKSRTLPHGLYTPLEVPKEPWVDISMD 226
           V KT ++LHEH FWP +KRDVER    CI C++ KSR LPHGLYT L VP  PWV+I MD
Sbjct: 181 VRKTLDVLHEHFFWPKMKRDVERACARCITCRRTKSRVLPHGLYTLLPVPSAPWVNIYMD 240

Query: 225 FILGLPRTSKGIDSIFVVVDRFSKMAHFIPCRKSDDASHVASLFFTWIVRFHGIPRSIVS 46
           F+LGLPR+  G DSIFVVVDRFSKM HFI C K++DA+H+A+LFF  IV  +G+P+SIVS
Sbjct: 241 FVLGLPRSRNGRDSIFVVVDRFSKMTHFISCHKTNDATHIANLFFREIVWLYGVPKSIVS 300

Query: 45  DRDTKFLSHFWRVLW 1
           DRD KFL +FW+VLW
Sbjct: 301 DRDVKFLRYFWKVLW 315



 Score = 92.8 bits (229), Expect(2) = 7e-70
 Identities = 43/89 (48%), Positives = 62/89 (69%)
 Frame = -3

Query: 664 ADALSRRYTLLSTLQTKILGFEMLKEMYSSDHYFKEIFEKCLLAPFGKYFLHEGFFYCEG 485
           ADALSRRY L+STL  K+LGFE +KE+Y++D+ F  ++  C    FGK++  +G+ + + 
Sbjct: 94  ADALSRRYALVSTLNAKLLGFEYVKELYANDNDFASVYGACEKTAFGKFYRLDGYLFRKN 153

Query: 484 RLCISSCSTRILLVKEAHCGGLMGHFGVK 398
            LC+ + S   LLV+EAH G  MGHFGV+
Sbjct: 154 ILCVPNSSMCELLVREAHGGDXMGHFGVR 182


>emb|CAN80130.1| hypothetical protein VITISV_001989 [Vitis vinifera]
          Length = 340

 Score =  180 bits (456), Expect(2) = 1e-65
 Identities = 84/135 (62%), Positives = 99/135 (73%)
 Frame = -1

Query: 405 VSKTYEILHEHVFWPHLKRDVERFVGSCIECKKAKSRTLPHGLYTPLEVPKEPWVDISMD 226
           V KT ++LHEH FWP +KRDVER    CI C++AKSR LPHGLYTPL VP  PWVDISMD
Sbjct: 183 VRKTLDVLHEHFFWPKMKRDVERACARCITCRQAKSRVLPHGLYTPLPVPSAPWVDISMD 242

Query: 225 FILGLPRTSKGIDSIFVVVDRFSKMAHFIPCRKSDDASHVASLFFTWIVRFHGIPRSIVS 46
           F+LGLPR+                MAHFI   K+DDA+H+A+LFF  IVR +G+PRSIVS
Sbjct: 243 FVLGLPRS--------------RNMAHFISXHKTDDATHIANLFFREIVRLYGVPRSIVS 288

Query: 45  DRDTKFLSHFWRVLW 1
           DRD KFLS+FW+VLW
Sbjct: 289 DRDVKFLSYFWKVLW 303



 Score = 96.7 bits (239), Expect(2) = 1e-65
 Identities = 46/89 (51%), Positives = 61/89 (68%)
 Frame = -3

Query: 664 ADALSRRYTLLSTLQTKILGFEMLKEMYSSDHYFKEIFEKCLLAPFGKYFLHEGFFYCEG 485
           ADALSRRY L+STL  K+LGFE +KE+Y +D  F  ++  C    FGK++ H G+ + E 
Sbjct: 96  ADALSRRYALVSTLNAKLLGFEYVKELYVNDDDFASVYGACEKTTFGKFYRHLGYLFREN 155

Query: 484 RLCISSCSTRILLVKEAHCGGLMGHFGVK 398
           RL + +     LLV+EAH GGLMGHFGV+
Sbjct: 156 RLRVPNSFMNDLLVREAHGGGLMGHFGVR 184


>emb|CAN68499.1| hypothetical protein VITISV_041099 [Vitis vinifera]
          Length = 1115

 Score =  176 bits (445), Expect(2) = 2e-61
 Identities = 80/104 (76%), Positives = 91/104 (87%)
 Frame = -1

Query: 312  KKAKSRTLPHGLYTPLEVPKEPWVDISMDFILGLPRTSKGIDSIFVVVDRFSKMAHFIPC 133
            ++AKSR LPHGLYTPL VP  PWVDISMDF+LGLPR+  G DSIFVVVDRFSKMAHFI C
Sbjct: 870  RQAKSRVLPHGLYTPLPVPSAPWVDISMDFVLGLPRSRNGRDSIFVVVDRFSKMAHFISC 929

Query: 132  RKSDDASHVASLFFTWIVRFHGIPRSIVSDRDTKFLSHFWRVLW 1
             K+DDA+H+A+LFF  IVR HG+PRSIVSDRD KFLS+FW+VLW
Sbjct: 930  HKTDDATHIANLFFRKIVRLHGVPRSIVSDRDVKFLSYFWKVLW 973



 Score = 86.7 bits (213), Expect(2) = 2e-61
 Identities = 41/82 (50%), Positives = 56/82 (68%)
 Frame = -3

Query: 661  DALSRRYTLLSTLQTKILGFEMLKEMYSSDHYFKEIFEKCLLAPFGKYFLHEGFFYCEGR 482
            DALSRRY L+STL  K+LGFE +KE+Y++D  F  ++  C    FGK++  +G+ + E R
Sbjct: 771  DALSRRYALVSTLNAKLLGFEYVKELYANDDDFSSVYGACEKITFGKFYRLDGYLFRENR 830

Query: 481  LCISSCSTRILLVKEAHCGGLM 416
            LC+ + S   LLV EAH GGLM
Sbjct: 831  LCVPNSSMLELLVHEAHGGGLM 852


>ref|XP_006575965.1| PREDICTED: uncharacterized protein LOC102669237, partial [Glycine
            max]
          Length = 1520

 Score =  206 bits (523), Expect(2) = 9e-61
 Identities = 88/135 (65%), Positives = 107/135 (79%)
 Frame = -1

Query: 405  VSKTYEILHEHVFWPHLKRDVERFVGSCIECKKAKSRTLPHGLYTPLEVPKEPWVDISMD 226
            + KT  +L E  +WPH+K+DV +    C+ C +AKSR +PHGLY PL +P  PWVDISMD
Sbjct: 1258 IDKTLVLLKEKFYWPHMKKDVHKHCTRCVACLQAKSRVMPHGLYIPLPIPSTPWVDISMD 1317

Query: 225  FILGLPRTSKGIDSIFVVVDRFSKMAHFIPCRKSDDASHVASLFFTWIVRFHGIPRSIVS 46
            F+LGLPRT +G+DSIFVVVDRFSKMAHFIPC K DDA H++ LFF  +VR HG+PR+IVS
Sbjct: 1318 FVLGLPRTQRGVDSIFVVVDRFSKMAHFIPCHKVDDAFHISKLFFKEVVRLHGLPRTIVS 1377

Query: 45   DRDTKFLSHFWRVLW 1
            DRD KFLSHFW+ LW
Sbjct: 1378 DRDAKFLSHFWKTLW 1392



 Score = 54.7 bits (130), Expect(2) = 9e-61
 Identities = 24/37 (64%), Positives = 29/37 (78%)
 Frame = -3

Query: 511  HEGFFYCEGRLCISSCSTRILLVKEAHCGGLMGHFGV 401
            HEG+ + EG+LCI   S R LLVKE+H GGLMGHFG+
Sbjct: 1222 HEGYLFKEGKLCIPQGSIRKLLVKESHEGGLMGHFGI 1258


>gb|ADP20179.1| gag-pol polyprotein [Silene latifolia]
          Length = 1475

 Score =  175 bits (444), Expect(2) = 4e-58
 Identities = 80/135 (59%), Positives = 102/135 (75%)
 Frame = -1

Query: 405  VSKTYEILHEHVFWPHLKRDVERFVGSCIECKKAKSRTLPHGLYTPLEVPKEPWVDISMD 226
            + KTY+IL E  +WP +  DV+  +  C  C+++KS     G YTPL VP +PW DISMD
Sbjct: 1098 IQKTYDILQEQFYWPKMLGDVQDVIKRCAPCQQSKSY-FQTGPYTPLPVPNQPWEDISMD 1156

Query: 225  FILGLPRTSKGIDSIFVVVDRFSKMAHFIPCRKSDDASHVASLFFTWIVRFHGIPRSIVS 46
            FI+ LPRT +G DSI VVVDRFSKMAHFI C+K++DA+ VA L+F  +V+ HGIP+SIVS
Sbjct: 1157 FIVALPRTQRGKDSIMVVVDRFSKMAHFIACKKTEDATSVAELYFKEVVKLHGIPKSIVS 1216

Query: 45   DRDTKFLSHFWRVLW 1
            DRD+KF+SHFWR LW
Sbjct: 1217 DRDSKFMSHFWRTLW 1231



 Score = 76.3 bits (186), Expect(2) = 4e-58
 Identities = 37/92 (40%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
 Frame = -3

Query: 664  ADALSRRYTLLSTLQTKILGFEMLKEMYSSDHYFK---EIFEKCLLAPFGKYFLHEGFFY 494
            ADALSRR+ +LS ++ ++LGFE +KE+Y  D  FK   E+ +   +    KY +  GF +
Sbjct: 1008 ADALSRRFIMLSFMEQRVLGFEYMKELYVEDPDFKGEWELLQSGQIKLKSKYLVQNGFLF 1067

Query: 493  CEGRLCISSCSTRILLVKEAHCGGLMGHFGVK 398
               +LC+     R LL++E H  GL GHFG++
Sbjct: 1068 FGNKLCVPRGPYRNLLIREVHSNGLAGHFGIQ 1099


>gb|EOX94045.1| DNA/RNA polymerases superfamily protein, partial [Theobroma cacao]
          Length = 624

 Score =  177 bits (449), Expect(2) = 5e-58
 Identities = 80/133 (60%), Positives = 96/133 (72%)
 Frame = -1

Query: 399 KTYEILHEHVFWPHLKRDVERFVGSCIECKKAKSRTLPHGLYTPLEVPKEPWVDISMDFI 220
           KT  ++ +  +WP ++RDVER V  C  C   K      GLY PL  P  PW+ +SMDF+
Sbjct: 489 KTLAMVADRYYWPKMRRDVERLVKRCPACLFGKGSAQNTGLYVPLPEPDAPWIHLSMDFV 548

Query: 219 LGLPRTSKGIDSIFVVVDRFSKMAHFIPCRKSDDASHVASLFFTWIVRFHGIPRSIVSDR 40
           LGLP+T+KG DSIFVVVDRFSKMAHFIPC ++ DA+H+A LFF  IVR HGIP SIVSDR
Sbjct: 549 LGLPKTAKGFDSIFVVVDRFSKMAHFIPCFRTSDATHIAELFFREIVRLHGIPTSIVSDR 608

Query: 39  DTKFLSHFWRVLW 1
           D KF+ HFWR LW
Sbjct: 609 DVKFMGHFWRTLW 621



 Score = 73.9 bits (180), Expect(2) = 5e-58
 Identities = 41/90 (45%), Positives = 53/90 (58%), Gaps = 3/90 (3%)
 Frame = -3

Query: 664 ADALSRRYTLLSTLQTKILGFEMLKEMYSSDHYFKEI---FEKCLLAPFGKYFLHEGFFY 494
           ADALSRR  +LS + T++ GFE LK  YSSD YF +I    +  L A    Y LHE + +
Sbjct: 397 ADALSRRCKMLSVMSTQVTGFEELKNQYSSDSYFSKIIADLQGSLQAENLPYRLHEDYLF 456

Query: 493 CEGRLCISSCSTRILLVKEAHCGGLMGHFG 404
              +LCI   S R  +++E H  GL GHFG
Sbjct: 457 KGNQLCIPEGSLREQIIRELHGNGLGGHFG 486


>gb|EOY01158.1| DNA/RNA polymerases superfamily protein [Theobroma cacao]
          Length = 786

 Score =  175 bits (444), Expect(2) = 2e-57
 Identities = 79/133 (59%), Positives = 96/133 (72%)
 Frame = -1

Query: 399 KTYEILHEHVFWPHLKRDVERFVGSCIECKKAKSRTLPHGLYTPLEVPKEPWVDISMDFI 220
           KT  ++ +  +WP ++RDVER V  C  C   K      GLY PL  P  PW+ +SMDF+
Sbjct: 489 KTLAMVADRYYWPKMRRDVERLVKRCPACLFGKGSAQNTGLYVPLPEPDAPWIHLSMDFV 548

Query: 219 LGLPRTSKGIDSIFVVVDRFSKMAHFIPCRKSDDASHVASLFFTWIVRFHGIPRSIVSDR 40
           LGLP+T+KG DSIFVVVDRFSKMAHFIPC ++ +A+H+A LFF  IVR HGIP SIVSDR
Sbjct: 549 LGLPKTAKGFDSIFVVVDRFSKMAHFIPCFRTSNATHIAELFFREIVRLHGIPTSIVSDR 608

Query: 39  DTKFLSHFWRVLW 1
           D KF+ HFWR LW
Sbjct: 609 DVKFMGHFWRTLW 621



 Score = 73.9 bits (180), Expect(2) = 2e-57
 Identities = 41/90 (45%), Positives = 53/90 (58%), Gaps = 3/90 (3%)
 Frame = -3

Query: 664 ADALSRRYTLLSTLQTKILGFEMLKEMYSSDHYFKEI---FEKCLLAPFGKYFLHEGFFY 494
           ADALSRR  +LS + T++ GFE LK  YSSD YF +I    +  L A    Y LHE + +
Sbjct: 397 ADALSRRCKMLSVMSTQVTGFEELKNQYSSDSYFSKIIADLQGSLQAENLPYRLHEDYLF 456

Query: 493 CEGRLCISSCSTRILLVKEAHCGGLMGHFG 404
              +LCI   S R  +++E H  GL GHFG
Sbjct: 457 KGNQLCIPEGSLREQIIRELHGNGLGGHFG 486


>ref|XP_006596896.1| PREDICTED: uncharacterized protein LOC102664455 [Glycine max]
          Length = 1176

 Score =  227 bits (579), Expect = 2e-57
 Identities = 108/170 (63%), Positives = 125/170 (73%), Gaps = 2/170 (1%)
 Frame = -1

Query: 504  DFFIVKVD--CAYHLVLLEFYLSKKHIVGV*WDILVSKTYEILHEHVFWPHLKRDVERFV 331
            D F+ K +  C     + E  +S+ H  G+     V KT EIL EH FWPH++RDV +F 
Sbjct: 773  DGFLFKANKLCVPKCSIRELLVSESHEGGLMGHFGVQKTLEILQEHFFWPHMRRDVHKFC 832

Query: 330  GSCIECKKAKSRTLPHGLYTPLEVPKEPWVDISMDFILGLPRTSKGIDSIFVVVDRFSKM 151
            G CI CK+AKS+  PHGLYTPL VP+ PW DISMDF+LGLP+T  G DS+FVVVDRFSKM
Sbjct: 833  GHCIVCKQAKSKVKPHGLYTPLPVPEYPWTDISMDFVLGLPKTKNGKDSVFVVVDRFSKM 892

Query: 150  AHFIPCRKSDDASHVASLFFTWIVRFHGIPRSIVSDRDTKFLSHFWRVLW 1
            AHFIPC+K DDA HVA LFF  IVR HG+PRSIVSDRD KFLSHFWR LW
Sbjct: 893  AHFIPCKKVDDACHVADLFFKEIVRLHGLPRSIVSDRDAKFLSHFWRTLW 942


>gb|AAU90169.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1154

 Score =  187 bits (475), Expect(2) = 1e-56
 Identities = 85/119 (71%), Positives = 97/119 (81%)
 Frame = -1

Query: 357  LKRDVERFVGSCIECKKAKSRTLPHGLYTPLEVPKEPWVDISMDFILGLPRTSKGIDSIF 178
            L+ DVER+V  C+   KAKS+  PHGLYTPL VP  PW DISMDF+LGLPRT +G DSIF
Sbjct: 829  LRHDVERYVQRCVTSHKAKSKLNPHGLYTPLPVPNAPWEDISMDFVLGLPRTRRGRDSIF 888

Query: 177  VVVDRFSKMAHFIPCRKSDDASHVASLFFTWIVRFHGIPRSIVSDRDTKFLSHFWRVLW 1
            V VDRFSKMAHFIPC KSDDASHVA LFF  +VR HG+PR+IVSDRD KF+S+FW+ LW
Sbjct: 889  VAVDRFSKMAHFIPCNKSDDASHVADLFFREVVRLHGVPRTIVSDRDVKFMSYFWKTLW 947



 Score = 59.7 bits (143), Expect(2) = 1e-56
 Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
 Frame = -3

Query: 664 ADALSRRYTLLSTLQTKILGFEMLKEMYSSDHYFKEIFEKCLLAP-FGKYFLHEGFFYCE 488
           ADALSR+  LL+ L  K+   E LKE+YS D  F + + KCL    + KY +H+GF +  
Sbjct: 760 ADALSRKSVLLTQLDVKVSSLESLKELYSKDSEFSDPYSKCLDGKGWEKYHVHDGFLFRA 819

Query: 487 GRLCISSCSTR 455
            +LC+   S R
Sbjct: 820 DKLCVPESSLR 830


>gb|ADP20178.1| gag-pol polyprotein [Silene latifolia]
          Length = 1518

 Score =  167 bits (422), Expect(2) = 2e-56
 Identities = 76/135 (56%), Positives = 99/135 (73%)
 Frame = -1

Query: 405  VSKTYEILHEHVFWPHLKRDVERFVGSCIECKKAKSRTLPHGLYTPLEVPKEPWVDISMD 226
            V KT EIL +  +WP +  DV+  +  C +C+ +KS   P G YTPL VP +PW D+SMD
Sbjct: 1110 VQKTLEILQDQFYWPRMMGDVQIILRRCSKCQLSKSSFQP-GPYTPLPVPSKPWEDLSMD 1168

Query: 225  FILGLPRTSKGIDSIFVVVDRFSKMAHFIPCRKSDDASHVASLFFTWIVRFHGIPRSIVS 46
            FI+ LPRT +G DS+ VVVDRFSKMAHF+ C+K++DA  VA LF   IVR HG+P++IVS
Sbjct: 1169 FIVALPRTQRGKDSVMVVVDRFSKMAHFVACKKTEDAVSVAELFLKEIVRLHGVPKTIVS 1228

Query: 45   DRDTKFLSHFWRVLW 1
            DRDTKF+ +FW+ LW
Sbjct: 1229 DRDTKFMGYFWKTLW 1243



 Score = 79.0 bits (193), Expect(2) = 2e-56
 Identities = 41/92 (44%), Positives = 57/92 (61%), Gaps = 3/92 (3%)
 Frame = -3

Query: 664  ADALSRRYTLLSTLQTKILGFEMLKEMYSSDHYFKEIF---EKCLLAPFGKYFLHEGFFY 494
            ADALSRR++LLS +  ++LGFE +KE+Y  D  F E +    +       KY L EGF +
Sbjct: 1020 ADALSRRHSLLSVMSNRVLGFEFMKELYKEDPDFSEEWITQTEGHKNQGSKYLLQEGFLF 1079

Query: 493  CEGRLCISSCSTRILLVKEAHCGGLMGHFGVK 398
               +LC+   S R LL++E H GG+ GHFGV+
Sbjct: 1080 QGNKLCVPRGSYRDLLIREVHSGGMGGHFGVQ 1111


>gb|AAW28578.1| Putative gag-pol polyprotein, identical [Solanum demissum]
          Length = 1588

 Score =  222 bits (565), Expect = 9e-56
 Identities = 106/174 (60%), Positives = 130/174 (74%), Gaps = 2/174 (1%)
 Frame = -1

Query: 516  FCMKDFFIVKVD--CAYHLVLLEFYLSKKHIVGV*WDILVSKTYEILHEHVFWPHLKRDV 343
            F ++D F+ K +  C  +  L E ++ + H  G+     V KT EIL EH +WP +++DV
Sbjct: 1125 FNLQDEFLFKENKLCVPNCSLRELFVREAHCGGLMGHFGVPKTLEILSEHFYWPSMRKDV 1184

Query: 342  ERFVGSCIECKKAKSRTLPHGLYTPLEVPKEPWVDISMDFILGLPRTSKGIDSIFVVVDR 163
            E+    C+ECK+AKSRTLPHGLYTPL V   PW+DISMDFILGLPRT  G DSIFVVVDR
Sbjct: 1185 EKVCSYCLECKQAKSRTLPHGLYTPLPVSNSPWIDISMDFILGLPRTKYGKDSIFVVVDR 1244

Query: 162  FSKMAHFIPCRKSDDASHVASLFFTWIVRFHGIPRSIVSDRDTKFLSHFWRVLW 1
            FSKMA FIPC+K++DASHVA LF   +V+ HGIPR+IVSDRD KFLSHFWR+LW
Sbjct: 1245 FSKMARFIPCKKTNDASHVADLFVKEVVKLHGIPRTIVSDRDAKFLSHFWRILW 1298



 Score =  114 bits (286), Expect = 2e-23
 Identities = 57/112 (50%), Positives = 77/112 (68%), Gaps = 1/112 (0%)
 Frame = -3

Query: 664  ADALSRRYTLLSTLQTKILGFEMLKEMYSSDHYFKEIFEKCLLAPFGKYFLHEGFFYCEG 485
            ADALSRRY L+STL +K+LGF+ +K +Y++D  F EIF +C L PF K+ L + F + E 
Sbjct: 1077 ADALSRRYVLISTLTSKLLGFDQIKFLYANDSDFGEIFAECKLGPFEKFNLQDEFLFKEN 1136

Query: 484  RLCISSCSTRILLVKEAHCGGLMGHFGV-KNL*NSS*TCFLATFKKRCRKIC 332
            +LC+ +CS R L V+EAHCGGLMGHFGV K L   S   +  + +K   K+C
Sbjct: 1137 KLCVPNCSLRELFVREAHCGGLMGHFGVPKTLEILSEHFYWPSMRKDVEKVC 1188


>gb|EOY16699.1| Uncharacterized protein TCM_035549 [Theobroma cacao]
          Length = 1392

 Score =  169 bits (429), Expect(2) = 1e-55
 Identities = 77/133 (57%), Positives = 94/133 (70%)
 Frame = -1

Query: 399  KTYEILHEHVFWPHLKRDVERFVGSCIECKKAKSRTLPHGLYTPLEVPKEPWVDISMDFI 220
            KT  ++ +  +WP +++DVER V  C  C   K      GLY PL  P  PW+ +SMDF+
Sbjct: 977  KTLAMVADRYYWPKMRQDVERLVKRCPTCLFGKGSAQNTGLYVPLPEPDAPWIHLSMDFV 1036

Query: 219  LGLPRTSKGIDSIFVVVDRFSKMAHFIPCRKSDDASHVASLFFTWIVRFHGIPRSIVSDR 40
            LGLP+T+K  DSIFVVVDRFSKMAHFIPC ++ DA+H+A LFF  IVR H IP SIVSDR
Sbjct: 1037 LGLPKTAKRFDSIFVVVDRFSKMAHFIPCFRTSDATHIAELFFREIVRLHRIPTSIVSDR 1096

Query: 39   DTKFLSHFWRVLW 1
            D KF+ HFWR LW
Sbjct: 1097 DVKFMGHFWRTLW 1109



 Score = 73.9 bits (180), Expect(2) = 1e-55
 Identities = 41/90 (45%), Positives = 53/90 (58%), Gaps = 3/90 (3%)
 Frame = -3

Query: 664  ADALSRRYTLLSTLQTKILGFEMLKEMYSSDHYFKEI---FEKCLLAPFGKYFLHEGFFY 494
            ADALSRR  +LS + T++ GFE LK  YSSD YF +I    +  L A    Y LHE + +
Sbjct: 885  ADALSRRCKMLSVMSTQVTGFEELKNQYSSDSYFSKIIADLQGSLQAENLPYRLHEDYLF 944

Query: 493  CEGRLCISSCSTRILLVKEAHCGGLMGHFG 404
               +LCI   S R  +++E H  GL GHFG
Sbjct: 945  KGNQLCIPEGSLREQIIRELHGNGLGGHFG 974


>gb|EOX95569.1| DNA/RNA polymerases superfamily protein [Theobroma cacao]
          Length = 1452

 Score =  169 bits (427), Expect(2) = 2e-55
 Identities = 77/133 (57%), Positives = 94/133 (70%)
 Frame = -1

Query: 399  KTYEILHEHVFWPHLKRDVERFVGSCIECKKAKSRTLPHGLYTPLEVPKEPWVDISMDFI 220
            KT  ++ +  +WP ++RDVER V  C  C   K      GLY PL  P  PW+ +SMDF+
Sbjct: 1037 KTLVMVADRYYWPKMRRDVERLVKRCPACLFGKGSAQNTGLYVPLPEPDAPWIHLSMDFV 1096

Query: 219  LGLPRTSKGIDSIFVVVDRFSKMAHFIPCRKSDDASHVASLFFTWIVRFHGIPRSIVSDR 40
            LGLP+T+KG DSIFVVVDRFSKMAHFIPC ++ DA+H+A LFF  IV  HGIP SIVSDR
Sbjct: 1097 LGLPKTTKGFDSIFVVVDRFSKMAHFIPCFRTSDATHIAELFFREIVILHGIPTSIVSDR 1156

Query: 39   DTKFLSHFWRVLW 1
              KF+ +FWR LW
Sbjct: 1157 HVKFMGYFWRTLW 1169



 Score = 73.9 bits (180), Expect(2) = 2e-55
 Identities = 41/90 (45%), Positives = 53/90 (58%), Gaps = 3/90 (3%)
 Frame = -3

Query: 664  ADALSRRYTLLSTLQTKILGFEMLKEMYSSDHYFKEI---FEKCLLAPFGKYFLHEGFFY 494
            ADALSRR  +LS + T++ GFE LK  YSSD YF +I    +  L A    Y LHE + +
Sbjct: 945  ADALSRRCKMLSVMSTQVTGFEELKNQYSSDSYFSKIIADLQGSLQAENLPYRLHEDYLF 1004

Query: 493  CEGRLCISSCSTRILLVKEAHCGGLMGHFG 404
               +LCI   S R  +++E H  GL GHFG
Sbjct: 1005 KGNQLCIPEGSLREQIIRELHGNGLGGHFG 1034


>gb|AAW28577.1| Putative gag-pol polyprotein, identical [Solanum demissum]
          Length = 1588

 Score =  221 bits (562), Expect = 2e-55
 Identities = 106/174 (60%), Positives = 130/174 (74%), Gaps = 2/174 (1%)
 Frame = -1

Query: 516  FCMKDFFIVKVD--CAYHLVLLEFYLSKKHIVGV*WDILVSKTYEILHEHVFWPHLKRDV 343
            F ++D F+ K +  C  +  L E ++ + H  G+     V KT EIL EH +WP +++DV
Sbjct: 1125 FNLQDEFLFKENKLCVPNCSLRELFVREAHCGGLMGHFGVPKTLEILSEHFYWPSMRKDV 1184

Query: 342  ERFVGSCIECKKAKSRTLPHGLYTPLEVPKEPWVDISMDFILGLPRTSKGIDSIFVVVDR 163
            E+    C+ECK+AKSRTLPHGLYTPL V   PW+DISMDFILGLPRT  G DSIFVVVDR
Sbjct: 1185 EKVCSYCLECKQAKSRTLPHGLYTPLPVSNFPWIDISMDFILGLPRTKYGKDSIFVVVDR 1244

Query: 162  FSKMAHFIPCRKSDDASHVASLFFTWIVRFHGIPRSIVSDRDTKFLSHFWRVLW 1
            FSKMA FIPC+K++DASHVA LF   +V+ HGIPR+IVSDRD KFLSHFWR+LW
Sbjct: 1245 FSKMARFIPCKKTNDASHVADLFVKEVVKLHGIPRTIVSDRDAKFLSHFWRILW 1298



 Score =  114 bits (286), Expect = 2e-23
 Identities = 57/112 (50%), Positives = 77/112 (68%), Gaps = 1/112 (0%)
 Frame = -3

Query: 664  ADALSRRYTLLSTLQTKILGFEMLKEMYSSDHYFKEIFEKCLLAPFGKYFLHEGFFYCEG 485
            ADALSRRY L+STL +K+LGF+ +K +Y++D  F EIF +C L PF K+ L + F + E 
Sbjct: 1077 ADALSRRYVLISTLTSKLLGFDQIKFLYANDSDFGEIFAECKLGPFEKFNLQDEFLFKEN 1136

Query: 484  RLCISSCSTRILLVKEAHCGGLMGHFGV-KNL*NSS*TCFLATFKKRCRKIC 332
            +LC+ +CS R L V+EAHCGGLMGHFGV K L   S   +  + +K   K+C
Sbjct: 1137 KLCVPNCSLRELFVREAHCGGLMGHFGVPKTLEILSEHFYWPSMRKDVEKVC 1188


>gb|AAQ56407.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
          Length = 1619

 Score =  220 bits (561), Expect = 3e-55
 Identities = 106/157 (67%), Positives = 121/157 (77%)
 Frame = -1

Query: 471  HLVLLEFYLSKKHIVGV*WDILVSKTYEILHEHVFWPHLKRDVERFVGSCIECKKAKSRT 292
            H++LL+    + H  G+     V KT +IL +H+FWP ++RDVERFV  C  C+KAKSR 
Sbjct: 1117 HMLLLQ----EAHGGGLMGHFGVKKTEDILADHLFWPKMRRDVERFVARCTTCQKAKSRL 1172

Query: 291  LPHGLYTPLEVPKEPWVDISMDFILGLPRTSKGIDSIFVVVDRFSKMAHFIPCRKSDDAS 112
             PHGLY PL VP  PW DISMDF+LGLPRT KG DSIFVVVDRFSKMAHFIPC KSDDA+
Sbjct: 1173 NPHGLYMPLPVPSVPWEDISMDFVLGLPRTKKGRDSIFVVVDRFSKMAHFIPCHKSDDAT 1232

Query: 111  HVASLFFTWIVRFHGIPRSIVSDRDTKFLSHFWRVLW 1
            HVA LFF  IVR HG+P +IVSDRDTKFLSHFWR LW
Sbjct: 1233 HVADLFFREIVRLHGVPNTIVSDRDTKFLSHFWRTLW 1269



 Score = 86.7 bits (213), Expect = 6e-15
 Identities = 44/89 (49%), Positives = 57/89 (64%), Gaps = 1/89 (1%)
 Frame = -3

Query: 661  DALSRRYTLLSTLQTKILGFEMLKEMYSSDHYFKEIFEKCLLA-PFGKYFLHEGFFYCEG 485
            DALSRRY +LS L  KI G E +KE Y+ D  FK++   C     + K+ L  GF +   
Sbjct: 1048 DALSRRYAMLSQLDFKIFGLETIKEQYAHDDDFKDVLLNCKEGRTWNKFVLTNGFVFRAN 1107

Query: 484  RLCISSCSTRILLVKEAHCGGLMGHFGVK 398
            +LCI + S  +LL++EAH GGLMGHFGVK
Sbjct: 1108 KLCIPASSVHMLLLQEAHGGGLMGHFGVK 1136


>gb|AAP43919.1| integrase [Gossypium hirsutum]
          Length = 334

 Score =  220 bits (561), Expect = 3e-55
 Identities = 104/182 (57%), Positives = 130/182 (71%), Gaps = 2/182 (1%)
 Frame = -1

Query: 540 C*HLLENIFCMKDFFIVKVD--CAYHLVLLEFYLSKKHIVGV*WDILVSKTYEILHEHVF 367
           C H     F + D  + +++  C     + E  + + H  G+     V+KT +IL EH  
Sbjct: 134 CGHTAFEKFYLVDGLLFRLNRLCIPKCSMRELLIHEAHSGGLMGHFGVAKTLDILQEHFH 193

Query: 366 WPHLKRDVERFVGSCIECKKAKSRTLPHGLYTPLEVPKEPWVDISMDFILGLPRTSKGID 187
           WPH+K+DVE+    CI CK+AKS+ + HGLYTPL +P  PWVD+SMDFILGLPRT KG D
Sbjct: 194 WPHMKKDVEKVCSKCITCKQAKSKVMLHGLYTPLPIPTSPWVDLSMDFILGLPRTKKGRD 253

Query: 186 SIFVVVDRFSKMAHFIPCRKSDDASHVASLFFTWIVRFHGIPRSIVSDRDTKFLSHFWRV 7
           SIFVVVDRFSKM+HFIPC K+DDA+HVA LFF  +VR HGIP++IVSDRD KFLSHFW+V
Sbjct: 254 SIFVVVDRFSKMSHFIPCHKTDDATHVADLFFKEVVRLHGIPKTIVSDRDVKFLSHFWKV 313

Query: 6   LW 1
           LW
Sbjct: 314 LW 315



 Score =  104 bits (259), Expect = 3e-20
 Identities = 56/114 (49%), Positives = 69/114 (60%), Gaps = 1/114 (0%)
 Frame = -3

Query: 664 ADALSRRYTLLSTLQTKILGFEMLKEMYSSDHYFKEIFEKCLLAPFGKYFLHEGFFYCEG 485
           ADALSRRYTL++TL  K+LGFE +KE+Y  D  F  I++ C    F K++L +G  +   
Sbjct: 94  ADALSRRYTLITTLNAKVLGFEHIKELYDDDTDFSHIYKNCGHTAFEKFYLVDGLLFRLN 153

Query: 484 RLCISSCSTRILLVKEAHCGGLMGHFGV-KNL*NSS*TCFLATFKKRCRKICRK 326
           RLCI  CS R LL+ EAH GGLMGHFGV K L            KK   K+C K
Sbjct: 154 RLCIPKCSMRELLIHEAHSGGLMGHFGVAKTLDILQEHFHWPHMKKDVEKVCSK 207


>gb|EOX92840.1| DNA/RNA polymerases superfamily protein [Theobroma cacao]
          Length = 647

 Score =  169 bits (428), Expect(2) = 7e-55
 Identities = 77/133 (57%), Positives = 93/133 (69%)
 Frame = -1

Query: 399 KTYEILHEHVFWPHLKRDVERFVGSCIECKKAKSRTLPHGLYTPLEVPKEPWVDISMDFI 220
           KT  ++ +  +WP + RDVER V  C  C   K      GLY PL  P  PW+ +SMDF+
Sbjct: 305 KTLAMVADRYYWPKMHRDVERLVKRCSTCLFGKGSAQNTGLYVPLLEPDAPWIHLSMDFV 364

Query: 219 LGLPRTSKGIDSIFVVVDRFSKMAHFIPCRKSDDASHVASLFFTWIVRFHGIPRSIVSDR 40
           LGLP+ +KG DSIFVVV +FSKMAHFIPC K+ DA+H+A LFF  +VR HGIP SIVSDR
Sbjct: 365 LGLPKIAKGFDSIFVVVYQFSKMAHFIPCFKTSDATHIAELFFCEVVRLHGIPTSIVSDR 424

Query: 39  DTKFLSHFWRVLW 1
           D KF+ HFWR LW
Sbjct: 425 DVKFMGHFWRTLW 437



 Score = 71.6 bits (174), Expect(2) = 7e-55
 Identities = 41/90 (45%), Positives = 52/90 (57%), Gaps = 3/90 (3%)
 Frame = -3

Query: 664 ADALSRRYTLLSTLQTKILGFEMLKEMYSSDHYFKEI---FEKCLLAPFGKYFLHEGFFY 494
           ADALSRR  +LS + T++ GFE LK  YSSD YF +I    +  L A    Y LHE + +
Sbjct: 213 ADALSRRCKMLSVMSTQVTGFEELKNQYSSDSYFSKIIADLQGSLQAGNLPYRLHEDYLF 272

Query: 493 CEGRLCISSCSTRILLVKEAHCGGLMGHFG 404
              +LCI   S R  ++ E H  GL GHFG
Sbjct: 273 KGNQLCILEGSLREQIIGELHGNGLGGHFG 302


>gb|ABF97027.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
           Japonica Group]
          Length = 889

 Score =  219 bits (557), Expect = 8e-55
 Identities = 104/149 (69%), Positives = 115/149 (77%)
 Frame = -1

Query: 447 LSKKHIVGV*WDILVSKTYEILHEHVFWPHLKRDVERFVGSCIECKKAKSRTLPHGLYTP 268
           L + H  G+     V KT +IL +H FWP ++RDVERFV  C  C+KAKSR  PHGLY P
Sbjct: 538 LQEAHGGGLMGHFGVKKTEDILADHFFWPKMRRDVERFVARCTTCQKAKSRLNPHGLYMP 597

Query: 267 LEVPKEPWVDISMDFILGLPRTSKGIDSIFVVVDRFSKMAHFIPCRKSDDASHVASLFFT 88
           L VP  PW DISMDF+LGLPRT KG DSIFVVVDRFSKMAHFIPC KSDDA+HVA LFF 
Sbjct: 598 LPVPSVPWEDISMDFVLGLPRTKKGRDSIFVVVDRFSKMAHFIPCHKSDDATHVADLFFR 657

Query: 87  WIVRFHGIPRSIVSDRDTKFLSHFWRVLW 1
            IVR HG+P +IVSDRDTKFLSHFWR LW
Sbjct: 658 EIVRLHGVPNTIVSDRDTKFLSHFWRTLW 686



 Score = 91.7 bits (226), Expect = 2e-16
 Identities = 46/90 (51%), Positives = 60/90 (66%), Gaps = 1/90 (1%)
 Frame = -3

Query: 664 ADALSRRYTLLSTLQTKILGFEMLKEMYSSDHYFKEIFEKCLLA-PFGKYFLHEGFFYCE 488
           ADALSRRY +LS L  KI G E +KE Y+ D  FK++   C+    + K+ L  GF +  
Sbjct: 464 ADALSRRYAMLSQLDFKIFGLETIKEQYAHDDDFKDVLLNCMEGRTWNKFVLTNGFVFRA 523

Query: 487 GRLCISSCSTRILLVKEAHCGGLMGHFGVK 398
            +LCI + S R+LL++EAH GGLMGHFGVK
Sbjct: 524 NKLCIPASSVRMLLLQEAHGGGLMGHFGVK 553


>gb|AAQ56388.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
            gi|91795218|gb|ABE60890.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 1616

 Score =  219 bits (557), Expect = 8e-55
 Identities = 104/149 (69%), Positives = 115/149 (77%)
 Frame = -1

Query: 447  LSKKHIVGV*WDILVSKTYEILHEHVFWPHLKRDVERFVGSCIECKKAKSRTLPHGLYTP 268
            L + H  G+     V KT +IL +H FWP ++RDVERFV  C  C+KAKSR  PHGLY P
Sbjct: 1225 LQEAHGGGLMGHFGVKKTEDILADHFFWPKMRRDVERFVARCTTCQKAKSRLNPHGLYMP 1284

Query: 267  LEVPKEPWVDISMDFILGLPRTSKGIDSIFVVVDRFSKMAHFIPCRKSDDASHVASLFFT 88
            L VP  PW DISMDF+LGLPRT KG DSIFVVVDRFSKMAHFIPC KSDDA+HVA LFF 
Sbjct: 1285 LPVPSVPWEDISMDFVLGLPRTKKGRDSIFVVVDRFSKMAHFIPCHKSDDATHVADLFFR 1344

Query: 87   WIVRFHGIPRSIVSDRDTKFLSHFWRVLW 1
             IVR HG+P +IVSDRDTKFLSHFWR LW
Sbjct: 1345 EIVRLHGVPNTIVSDRDTKFLSHFWRTLW 1373



 Score = 89.4 bits (220), Expect = 9e-16
 Identities = 46/90 (51%), Positives = 58/90 (64%), Gaps = 1/90 (1%)
 Frame = -3

Query: 664  ADALSRRYTLLSTLQTKILGFEMLKEMYSSDHYFKEIFEKCLLA-PFGKYFLHEGFFYCE 488
            ADALSRRY +LS L  KI G E +KE Y+ D  FK +   C     + K+ L  GF +  
Sbjct: 1151 ADALSRRYAMLSQLDFKIFGLETIKEQYAHDDDFKNVLLNCKEGRTWNKFVLTNGFVFRA 1210

Query: 487  GRLCISSCSTRILLVKEAHCGGLMGHFGVK 398
             +LCI + S R+LL++EAH GGLMGHFGVK
Sbjct: 1211 NKLCIPASSVRMLLLQEAHGGGLMGHFGVK 1240