BLASTX nr result
ID: Catharanthus22_contig00009654
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus22_contig00009654
(732 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003634352.1| PREDICTED: RNA pseudourine synthase 2, chlor... 293 5e-77
ref|XP_004238386.1| PREDICTED: RNA pseudourine synthase 2, chlor... 282 9e-74
ref|XP_006435255.1| hypothetical protein CICLE_v10001736mg [Citr... 281 1e-73
ref|XP_006435254.1| hypothetical protein CICLE_v10001736mg [Citr... 281 1e-73
ref|XP_006473714.1| PREDICTED: RNA pseudouridine synthase 2, chl... 281 2e-73
ref|XP_006342081.1| PREDICTED: RNA pseudouridine synthase 2, chl... 280 3e-73
ref|XP_004161095.1| PREDICTED: LOW QUALITY PROTEIN: RNA pseudour... 279 6e-73
ref|XP_004143077.1| PREDICTED: RNA pseudourine synthase 2, chlor... 279 6e-73
ref|XP_002301949.1| pseudouridine synthase family protein [Popul... 275 1e-71
gb|EOY15126.1| Pseudouridine synthase family protein isoform 2, ... 273 5e-71
gb|EOY15125.1| Pseudouridine synthase family protein isoform 1 [... 273 5e-71
ref|XP_006302277.1| hypothetical protein CARUB_v10020321mg [Caps... 270 5e-70
ref|XP_002519370.1| ribosomal pseudouridine synthase, putative [... 268 2e-69
ref|XP_003523282.1| PREDICTED: RNA pseudouridine synthase 2, chl... 266 4e-69
ref|XP_004500918.1| PREDICTED: RNA pseudourine synthase 2, chlor... 266 7e-69
gb|ESW08114.1| hypothetical protein PHAVU_009G019500g [Phaseolus... 263 3e-68
ref|XP_002887624.1| T4O12.25 [Arabidopsis lyrata subsp. lyrata] ... 263 3e-68
ref|XP_006390244.1| hypothetical protein EUTSA_v10018588mg [Eutr... 263 4e-68
ref|NP_177732.2| RNA pseudourine synthase 2 [Arabidopsis thalian... 261 2e-67
ref|NP_974151.1| RNA pseudourine synthase 2 [Arabidopsis thalian... 261 2e-67
>ref|XP_003634352.1| PREDICTED: RNA pseudourine synthase 2, chloroplastic-like [Vitis
vinifera] gi|302141717|emb|CBI18920.3| unnamed protein
product [Vitis vinifera]
Length = 433
Score = 293 bits (749), Expect = 5e-77
Identities = 167/246 (67%), Positives = 188/246 (76%), Gaps = 7/246 (2%)
Frame = -3
Query: 718 FSLNGALSWT-SIPSTKALKNSHNSLLMLRASNFIIRGCSNSTVE---AISDRPTTNYSG 551
FSLN A ++ S S AL N R I+R CSNST E ++S R TNY+G
Sbjct: 3 FSLNSASFFSISHTSQSALLFPRNPKSCSRVFR-ILRACSNSTDEPLVSVSGR-RTNYAG 60
Query: 550 IKLQETV-DVNS--GKLRLDSWISSRINGISRARVQSSIRSGLVSVNGRVVDKVSHTLRG 380
++L+ETV DVNS GKLRLDSWISSRI GISRARVQSSIRSGLVSVN R+VDKVSH +R
Sbjct: 61 VRLEETVVDVNSDSGKLRLDSWISSRIIGISRARVQSSIRSGLVSVNDRIVDKVSHVIRA 120
Query: 379 GDKVNCTISELQPLRAEPESMPLDIVYEDEHVLVVNKPAHMVVHPAPGNASGTLVNGILH 200
GDKVNCTISELQPLRAEPE +PLDIVYEDEHVLVVNKPAHMVVHPAPGNASGTLVNGILH
Sbjct: 121 GDKVNCTISELQPLRAEPEDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNASGTLVNGILH 180
Query: 199 HCSLPTVPLSSEVPSDEDVFDDEYSSSSTALSYKEGISSALSEASIRPGIVHRLDKGTSG 20
HCSLPTV L + ++D+ DDE++ S+ G + E +IRPGIVHRLDKGTSG
Sbjct: 181 HCSLPTVALPNRDSEEDDISDDEFN------SFAAGQNCGTCETNIRPGIVHRLDKGTSG 234
Query: 19 LLVVAK 2
LLVVAK
Sbjct: 235 LLVVAK 240
>ref|XP_004238386.1| PREDICTED: RNA pseudourine synthase 2, chloroplastic-like [Solanum
lycopersicum]
Length = 436
Score = 282 bits (721), Expect = 9e-74
Identities = 152/235 (64%), Positives = 179/235 (76%), Gaps = 9/235 (3%)
Frame = -3
Query: 679 STKALKNSHNSLLMLRASNFIIRGCSNSTVEAISDRPT-------TNYSGIKLQETVDVN 521
S L + + + R S+FI R + ++ SD +NYSG+KL+ETVD
Sbjct: 8 SFSLLPQNPKPISLSRVSSFICRAFTKFPGDSDSDDSPDEIPGRRSNYSGVKLEETVDSK 67
Query: 520 SGKLRLDSWISSRINGISRARVQSSIRSGLVSVNGRVVDKVSHTLRGGDKVNCTISELQP 341
+GKLRLDSW+SSRI+G+SRARVQSSIRSGLVSVNGRV DKVSH ++GGDKV+CTI++L+P
Sbjct: 68 TGKLRLDSWVSSRIDGVSRARVQSSIRSGLVSVNGRVTDKVSHMVKGGDKVDCTIADLKP 127
Query: 340 LRAEPESMPLDIVYEDEHVLVVNKPAHMVVHPAPGNASGTLVNGILHHCSLPTVPL-SSE 164
LRAEPE +PLDIVYEDEHVLVVNKPAHMVVHPAPGNA+GTLV+GILHHCSLPTV E
Sbjct: 128 LRAEPEDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVSGILHHCSLPTVSFPGEE 187
Query: 163 VPSD-EDVFDDEYSSSSTALSYKEGISSALSEASIRPGIVHRLDKGTSGLLVVAK 2
V SD ED DDE + S S SS + E+S+RPGIVHRLDKGTSGLLVVAK
Sbjct: 188 VLSDGEDASDDELNIFSPNRSPNYDDSSVMCESSVRPGIVHRLDKGTSGLLVVAK 242
>ref|XP_006435255.1| hypothetical protein CICLE_v10001736mg [Citrus clementina]
gi|557537377|gb|ESR48495.1| hypothetical protein
CICLE_v10001736mg [Citrus clementina]
Length = 341
Score = 281 bits (720), Expect = 1e-73
Identities = 158/244 (64%), Positives = 182/244 (74%), Gaps = 2/244 (0%)
Frame = -3
Query: 727 MLQFSLNGALSWTSIPSTKALKNSHNSLLMLRASNFIIRGCSNSTVEAISDRPTTNYSGI 548
M SLN A SW S TK L+ S + + CS+S+ + P NY+G+
Sbjct: 1 MTMLSLNSA-SWGSASCTKGLQFSPTKI-PFGVFKILRARCSSSSSGGNNREPIANYAGV 58
Query: 547 KLQETVDVNSGKLRLDSWISSRINGISRARVQSSIRSGLVSVNGRVVDKVSHTLRGGDKV 368
+L+ETVD +GKLRLD+WISSRI+GISRARVQSSIRSGLVSVNG+VV KVSH ++GGD V
Sbjct: 59 QLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSVNGQVVSKVSHNVKGGDMV 118
Query: 367 NCTISELQPLRAEPESMPLDIVYEDEHVLVVNKPAHMVVHPAPGNASGTLVNGILHHCSL 188
NCTISELQPLRAE E +PLDIVYED++VLVVNKPAHMVVHPAPGNA+GTLVNGILHHCSL
Sbjct: 119 NCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSL 178
Query: 187 PTVPLSS-EVPSD-EDVFDDEYSSSSTALSYKEGISSALSEASIRPGIVHRLDKGTSGLL 14
PT+ S+ E SD ED+ DDE SSS +S ASIRPGIVHRLDKGTSGLL
Sbjct: 179 PTLASSNQEAFSDAEDISDDEEFSSS------------ISGASIRPGIVHRLDKGTSGLL 226
Query: 13 VVAK 2
VVAK
Sbjct: 227 VVAK 230
>ref|XP_006435254.1| hypothetical protein CICLE_v10001736mg [Citrus clementina]
gi|557537376|gb|ESR48494.1| hypothetical protein
CICLE_v10001736mg [Citrus clementina]
Length = 324
Score = 281 bits (720), Expect = 1e-73
Identities = 158/244 (64%), Positives = 182/244 (74%), Gaps = 2/244 (0%)
Frame = -3
Query: 727 MLQFSLNGALSWTSIPSTKALKNSHNSLLMLRASNFIIRGCSNSTVEAISDRPTTNYSGI 548
M SLN A SW S TK L+ S + + CS+S+ + P NY+G+
Sbjct: 1 MTMLSLNSA-SWGSASCTKGLQFSPTKI-PFGVFKILRARCSSSSSGGNNREPIANYAGV 58
Query: 547 KLQETVDVNSGKLRLDSWISSRINGISRARVQSSIRSGLVSVNGRVVDKVSHTLRGGDKV 368
+L+ETVD +GKLRLD+WISSRI+GISRARVQSSIRSGLVSVNG+VV KVSH ++GGD V
Sbjct: 59 QLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSVNGQVVSKVSHNVKGGDMV 118
Query: 367 NCTISELQPLRAEPESMPLDIVYEDEHVLVVNKPAHMVVHPAPGNASGTLVNGILHHCSL 188
NCTISELQPLRAE E +PLDIVYED++VLVVNKPAHMVVHPAPGNA+GTLVNGILHHCSL
Sbjct: 119 NCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSL 178
Query: 187 PTVPLSS-EVPSD-EDVFDDEYSSSSTALSYKEGISSALSEASIRPGIVHRLDKGTSGLL 14
PT+ S+ E SD ED+ DDE SSS +S ASIRPGIVHRLDKGTSGLL
Sbjct: 179 PTLASSNQEAFSDAEDISDDEEFSSS------------ISGASIRPGIVHRLDKGTSGLL 226
Query: 13 VVAK 2
VVAK
Sbjct: 227 VVAK 230
>ref|XP_006473714.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic-like [Citrus
sinensis]
Length = 421
Score = 281 bits (719), Expect = 2e-73
Identities = 157/244 (64%), Positives = 182/244 (74%), Gaps = 2/244 (0%)
Frame = -3
Query: 727 MLQFSLNGALSWTSIPSTKALKNSHNSLLMLRASNFIIRGCSNSTVEAISDRPTTNYSGI 548
M SLN A SW S TK L+ S + + CS+S+ + P NY+G+
Sbjct: 1 MTMLSLNSA-SWGSASCTKGLQFSPTKI-PFGVFKILRARCSSSSSGGNNREPIANYAGV 58
Query: 547 KLQETVDVNSGKLRLDSWISSRINGISRARVQSSIRSGLVSVNGRVVDKVSHTLRGGDKV 368
+L+ETVD +GKLRLD+WISSRI+GISRARVQSSIRSGLVS+NG+VV KVSH ++GGD V
Sbjct: 59 QLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGDMV 118
Query: 367 NCTISELQPLRAEPESMPLDIVYEDEHVLVVNKPAHMVVHPAPGNASGTLVNGILHHCSL 188
NCTISELQPLRAE E +PLDIVYED++VLVVNKPAHMVVHPAPGNA+GTLVNGILHHCSL
Sbjct: 119 NCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHCSL 178
Query: 187 PTVPLSS-EVPSD-EDVFDDEYSSSSTALSYKEGISSALSEASIRPGIVHRLDKGTSGLL 14
PT+ S+ E SD ED+ DDE SSS +S ASIRPGIVHRLDKGTSGLL
Sbjct: 179 PTLASSNQEAFSDAEDISDDEEFSSS------------ISGASIRPGIVHRLDKGTSGLL 226
Query: 13 VVAK 2
VVAK
Sbjct: 227 VVAK 230
>ref|XP_006342081.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic-like
[Solanum tuberosum]
Length = 431
Score = 280 bits (716), Expect = 3e-73
Identities = 149/220 (67%), Positives = 175/220 (79%), Gaps = 9/220 (4%)
Frame = -3
Query: 634 RASNFIIRGCSNSTVEAISDRPT-------TNYSGIKLQETVDVNSGKLRLDSWISSRIN 476
R S+FI R + ++ SD +NYSG+KL+ETVD +GKLRLDSW+SSRI+
Sbjct: 23 RVSSFICRAFTKFPGDSDSDDSPDEIPGRRSNYSGVKLEETVDGKTGKLRLDSWVSSRID 82
Query: 475 GISRARVQSSIRSGLVSVNGRVVDKVSHTLRGGDKVNCTISELQPLRAEPESMPLDIVYE 296
G+SRARVQSSIRSGLVSVNGRV DKVSH ++GGDKV+CTI++L+PLRAEPE +PLDIV+E
Sbjct: 83 GVSRARVQSSIRSGLVSVNGRVTDKVSHMVKGGDKVDCTIADLKPLRAEPEDIPLDIVFE 142
Query: 295 DEHVLVVNKPAHMVVHPAPGNASGTLVNGILHHCSLPTVP-LSSEVPSD-EDVFDDEYSS 122
DEHVLVVNKPAHMVVHPAPGNA+GTLV+GILHHCSLPT+ L EV SD ED DDE +
Sbjct: 143 DEHVLVVNKPAHMVVHPAPGNATGTLVSGILHHCSLPTISFLGEEVLSDAEDASDDELNV 202
Query: 121 SSTALSYKEGISSALSEASIRPGIVHRLDKGTSGLLVVAK 2
S S SS + E+S+RPGIVHRLDKGTSGLLVVAK
Sbjct: 203 FSGNRSPNYDDSSVMCESSVRPGIVHRLDKGTSGLLVVAK 242
>ref|XP_004161095.1| PREDICTED: LOW QUALITY PROTEIN: RNA pseudourine synthase 2,
chloroplastic-like [Cucumis sativus]
Length = 452
Score = 279 bits (714), Expect = 6e-73
Identities = 152/213 (71%), Positives = 171/213 (80%), Gaps = 3/213 (1%)
Frame = -3
Query: 631 ASNFIIRGCSN--STVEAISDRPTTNYSGIKLQETVDVNSGKLRLDSWISSRINGISRAR 458
+SNF R S+ EA S+R NY+G +L+ETVDVN GK+RLDSWIS RINGISRAR
Sbjct: 36 SSNFSTRCSSDYDEYSEAQSER-IANYAGTRLEETVDVNPGKVRLDSWISCRINGISRAR 94
Query: 457 VQSSIRSGLVSVNGRVVDKVSHTLRGGDKVNCTISELQPLRAEPESMPLDIVYEDEHVLV 278
VQSSIR+GLVSVNGRV+DKVSH ++ GD +NCTISELQPLRAEPE + LDIVYEDEHVLV
Sbjct: 95 VQSSIRAGLVSVNGRVIDKVSHNVKAGDVINCTISELQPLRAEPEDIDLDIVYEDEHVLV 154
Query: 277 VNKPAHMVVHPAPGNASGTLVNGILHHCSLPTVPLSS-EVPSDEDVFDDEYSSSSTALSY 101
VNKPAHMVVHPAPGNA+GTLVN IL+HCSLP V S+ E SD DV DDE+SS
Sbjct: 155 VNKPAHMVVHPAPGNATGTLVNAILNHCSLPMVATSTGENESDSDVSDDEFSSI------ 208
Query: 100 KEGISSALSEASIRPGIVHRLDKGTSGLLVVAK 2
G+ S +SEA IRPGIVHRLDKGTSGLLVVAK
Sbjct: 209 --GVFSRVSEAPIRPGIVHRLDKGTSGLLVVAK 239
>ref|XP_004143077.1| PREDICTED: RNA pseudourine synthase 2, chloroplastic-like [Cucumis
sativus]
Length = 453
Score = 279 bits (714), Expect = 6e-73
Identities = 152/213 (71%), Positives = 171/213 (80%), Gaps = 3/213 (1%)
Frame = -3
Query: 631 ASNFIIRGCSN--STVEAISDRPTTNYSGIKLQETVDVNSGKLRLDSWISSRINGISRAR 458
+SNF R S+ EA S+R NY+G +L+ETVDVN GK+RLDSWIS RINGISRAR
Sbjct: 36 SSNFSTRCSSDYDEYSEAQSER-IANYAGTRLEETVDVNPGKVRLDSWISCRINGISRAR 94
Query: 457 VQSSIRSGLVSVNGRVVDKVSHTLRGGDKVNCTISELQPLRAEPESMPLDIVYEDEHVLV 278
VQSSIR+GLVSVNGRV+DKVSH ++ GD +NCTISELQPLRAEPE + LDIVYEDEHVLV
Sbjct: 95 VQSSIRAGLVSVNGRVIDKVSHNVKAGDVINCTISELQPLRAEPEDIDLDIVYEDEHVLV 154
Query: 277 VNKPAHMVVHPAPGNASGTLVNGILHHCSLPTVPLSS-EVPSDEDVFDDEYSSSSTALSY 101
VNKPAHMVVHPAPGNA+GTLVN IL+HCSLP V S+ E SD DV DDE+SS
Sbjct: 155 VNKPAHMVVHPAPGNATGTLVNAILNHCSLPMVATSTGENESDSDVSDDEFSSI------ 208
Query: 100 KEGISSALSEASIRPGIVHRLDKGTSGLLVVAK 2
G+ S +SEA IRPGIVHRLDKGTSGLLVVAK
Sbjct: 209 --GVFSRVSEAPIRPGIVHRLDKGTSGLLVVAK 239
>ref|XP_002301949.1| pseudouridine synthase family protein [Populus trichocarpa]
gi|222843675|gb|EEE81222.1| pseudouridine synthase
family protein [Populus trichocarpa]
Length = 444
Score = 275 bits (702), Expect = 1e-71
Identities = 144/204 (70%), Positives = 165/204 (80%), Gaps = 3/204 (1%)
Frame = -3
Query: 604 SNSTVEAISDR---PTTNYSGIKLQETVDVNSGKLRLDSWISSRINGISRARVQSSIRSG 434
S+ST E S++ NYSG+KL+E+VD SGK RLDSWISSRI+GISRARVQSSI+SG
Sbjct: 60 SSSTREPNSNQNPGQRINYSGVKLEESVDSKSGKSRLDSWISSRISGISRARVQSSIKSG 119
Query: 433 LVSVNGRVVDKVSHTLRGGDKVNCTISELQPLRAEPESMPLDIVYEDEHVLVVNKPAHMV 254
LVSVNG+V+DKVSH ++ GDKVNC ISELQPLRAEPE++PLDIVYEDE+VLVVNKPAHMV
Sbjct: 120 LVSVNGKVIDKVSHNVKAGDKVNCVISELQPLRAEPENIPLDIVYEDENVLVVNKPAHMV 179
Query: 253 VHPAPGNASGTLVNGILHHCSLPTVPLSSEVPSDEDVFDDEYSSSSTALSYKEGISSALS 74
VHPAPGNA+GTLVNGILHHCSLPTV + EDV DD+ EG+ S+
Sbjct: 180 VHPAPGNATGTLVNGILHHCSLPTVSSQEVLSGAEDVSDDD----------DEGLCSSSY 229
Query: 73 EASIRPGIVHRLDKGTSGLLVVAK 2
AS+RPGIVHRLDKGTSGLLVVAK
Sbjct: 230 AASVRPGIVHRLDKGTSGLLVVAK 253
>gb|EOY15126.1| Pseudouridine synthase family protein isoform 2, partial [Theobroma
cacao]
Length = 409
Score = 273 bits (697), Expect = 5e-71
Identities = 159/247 (64%), Positives = 178/247 (72%), Gaps = 4/247 (1%)
Frame = -3
Query: 730 KMLQFSLNGALSWTSIPSTKALKNSHNSLLMLRASNFIIRGCSNSTVEAISDRPTTNYSG 551
K+L F+L+G L + PS+ GC+ T E I T+Y+G
Sbjct: 18 KLLPFTLSGILRARARPSS---------------------GCAAKTQEPIR----TSYTG 52
Query: 550 IKLQETVD-VNSGKLRLDSWISSRINGISRARVQSSIRSGLVSVNGRVVDKVSHTLRGGD 374
++L+ETVD GKLRLDSWISSRI GISRARVQSSI+SGLV+VNGRVVDKVSH LR GD
Sbjct: 53 VQLEETVDGTKQGKLRLDSWISSRIQGISRARVQSSIKSGLVTVNGRVVDKVSHGLRHGD 112
Query: 373 KVNCTISELQPLRAEPESMPLDIVYEDEHVLVVNKPAHMVVHPAPGNASGTLVNGILHHC 194
KVNC ISELQPLRAEPE +PLDIVYED+HVLVVNKP HMVVHPAPGNA+GTLVNGILHHC
Sbjct: 113 KVNCVISELQPLRAEPEDIPLDIVYEDDHVLVVNKPPHMVVHPAPGNATGTLVNGILHHC 172
Query: 193 SLPTVPLS-SEVPSD-EDVFDDEYSSSSTALSYKEGIS-SALSEASIRPGIVHRLDKGTS 23
SLPTV LS EV SD EDV DD+ EG A + AS+RPGIVHRLDKGTS
Sbjct: 173 SLPTVALSEKEVLSDTEDVSDDD-----------EGFCYGASAAASVRPGIVHRLDKGTS 221
Query: 22 GLLVVAK 2
GLLVVAK
Sbjct: 222 GLLVVAK 228
>gb|EOY15125.1| Pseudouridine synthase family protein isoform 1 [Theobroma cacao]
Length = 433
Score = 273 bits (697), Expect = 5e-71
Identities = 159/247 (64%), Positives = 178/247 (72%), Gaps = 4/247 (1%)
Frame = -3
Query: 730 KMLQFSLNGALSWTSIPSTKALKNSHNSLLMLRASNFIIRGCSNSTVEAISDRPTTNYSG 551
K+L F+L+G L + PS+ GC+ T E I T+Y+G
Sbjct: 31 KLLPFTLSGILRARARPSS---------------------GCAAKTQEPIR----TSYTG 65
Query: 550 IKLQETVD-VNSGKLRLDSWISSRINGISRARVQSSIRSGLVSVNGRVVDKVSHTLRGGD 374
++L+ETVD GKLRLDSWISSRI GISRARVQSSI+SGLV+VNGRVVDKVSH LR GD
Sbjct: 66 VQLEETVDGTKQGKLRLDSWISSRIQGISRARVQSSIKSGLVTVNGRVVDKVSHGLRHGD 125
Query: 373 KVNCTISELQPLRAEPESMPLDIVYEDEHVLVVNKPAHMVVHPAPGNASGTLVNGILHHC 194
KVNC ISELQPLRAEPE +PLDIVYED+HVLVVNKP HMVVHPAPGNA+GTLVNGILHHC
Sbjct: 126 KVNCVISELQPLRAEPEDIPLDIVYEDDHVLVVNKPPHMVVHPAPGNATGTLVNGILHHC 185
Query: 193 SLPTVPLS-SEVPSD-EDVFDDEYSSSSTALSYKEGIS-SALSEASIRPGIVHRLDKGTS 23
SLPTV LS EV SD EDV DD+ EG A + AS+RPGIVHRLDKGTS
Sbjct: 186 SLPTVALSEKEVLSDTEDVSDDD-----------EGFCYGASAAASVRPGIVHRLDKGTS 234
Query: 22 GLLVVAK 2
GLLVVAK
Sbjct: 235 GLLVVAK 241
>ref|XP_006302277.1| hypothetical protein CARUB_v10020321mg [Capsella rubella]
gi|482570987|gb|EOA35175.1| hypothetical protein
CARUB_v10020321mg [Capsella rubella]
Length = 432
Score = 270 bits (689), Expect = 5e-70
Identities = 149/251 (59%), Positives = 181/251 (72%), Gaps = 9/251 (3%)
Frame = -3
Query: 727 MLQFSLNGALSWTSIPSTKALKNSHNSLLML-----RASNFIIRGCSNSTVEAISDR--- 572
ML S + S TS+ S + +S +SL + R S+F+ + A S
Sbjct: 1 MLSISQLPSFSLTSVKSLRYPSSSSSSLSVFFSFFPRVSDFVRASSGIHNLVACSPTESI 60
Query: 571 -PTTNYSGIKLQETVDVNSGKLRLDSWISSRINGISRARVQSSIRSGLVSVNGRVVDKVS 395
P N +G++++ETVD GK+RLDSWISSRING+SRARVQSSIR GLV+VNGRVVDKVS
Sbjct: 61 LPRVNNAGLRIEETVDDLKGKIRLDSWISSRINGVSRARVQSSIRLGLVTVNGRVVDKVS 120
Query: 394 HTLRGGDKVNCTISELQPLRAEPESMPLDIVYEDEHVLVVNKPAHMVVHPAPGNASGTLV 215
H ++ GD+VNCTISELQPL+AE E +PLDIVYED+HVLVVNKPAHMVVHPAPGN +GTLV
Sbjct: 121 HNVKAGDEVNCTISELQPLKAEAEDIPLDIVYEDKHVLVVNKPAHMVVHPAPGNPTGTLV 180
Query: 214 NGILHHCSLPTVPLSSEVPSDEDVFDDEYSSSSTALSYKEGISSALSEASIRPGIVHRLD 35
NGILHHCSLP+V SS P D+D D+ +S +E SS+ AS+RPGIVHRLD
Sbjct: 181 NGILHHCSLPSVAYSS--PEDDDSDDESFSDG------EEMTSSSSYAASVRPGIVHRLD 232
Query: 34 KGTSGLLVVAK 2
KGT+GLLVVAK
Sbjct: 233 KGTTGLLVVAK 243
>ref|XP_002519370.1| ribosomal pseudouridine synthase, putative [Ricinus communis]
gi|223541437|gb|EEF42987.1| ribosomal pseudouridine
synthase, putative [Ricinus communis]
Length = 399
Score = 268 bits (684), Expect = 2e-69
Identities = 150/212 (70%), Positives = 164/212 (77%), Gaps = 5/212 (2%)
Frame = -3
Query: 622 FIIRGCSNSTVEAISDRPTTNYSGIKLQETVDV---NSGKLRLDSWISSRINGISRARVQ 452
F IR C N T NY GI+L+ETV V S KLRLDSWISSRI+GISRARVQ
Sbjct: 42 FTIRSCQNHT----------NYGGIRLEETVQVVHAKSVKLRLDSWISSRISGISRARVQ 91
Query: 451 SSIRSGLVSVNGRVVDKVSHTLRGGDKVNCTISELQPLRAEPESMPLDIVYEDEHVLVVN 272
SSI+SGLVSVNGRVVDKVSH ++ GDKV CTISELQPLRAEPE MPLDIVYEDEH+LVVN
Sbjct: 92 SSIKSGLVSVNGRVVDKVSHNVKFGDKVTCTISELQPLRAEPEDMPLDIVYEDEHLLVVN 151
Query: 271 KPAHMVVHPAPGNASGTLVNGILHHCSLPTVPLSS-EVPSD-EDVFDDEYSSSSTALSYK 98
KP HMVVHPAPGN +GTLVNGILHHC+LPTV +SS EV SD ED DD+ S S++
Sbjct: 152 KPPHMVVHPAPGNPTGTLVNGILHHCNLPTVAISSQEVLSDAEDRSDDDERSYSSS---- 207
Query: 97 EGISSALSEASIRPGIVHRLDKGTSGLLVVAK 2
E+SIRPGIVHRLDKGTSGLLVVAK
Sbjct: 208 -------CESSIRPGIVHRLDKGTSGLLVVAK 232
>ref|XP_003523282.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic-like isoform
X1 [Glycine max] gi|571448797|ref|XP_006577958.1|
PREDICTED: RNA pseudouridine synthase 2,
chloroplastic-like isoform X2 [Glycine max]
Length = 450
Score = 266 bits (681), Expect = 4e-69
Identities = 146/225 (64%), Positives = 174/225 (77%), Gaps = 11/225 (4%)
Frame = -3
Query: 643 LMLRASNFIIRGC-----SNSTVEAISD-RPTTNYSGIKLQETVD--VNSGKLRLDSWIS 488
L L A+++ R S S ++ SD P N+SG++L+E VD + SGKLRLD+WIS
Sbjct: 30 LFLSATSYKFRSATASAASGSAGDSDSDGEPKLNFSGVRLEEAVDSRIGSGKLRLDNWIS 89
Query: 487 SRINGISRARVQSSIRSGLVSVNGRVVDKVSHTLRGGDKVNCTISELQPLRAEPESMPLD 308
SRINGISRARVQSSI+SGLV VNGRVVDKVS ++ GD++ CTI+ELQ LRA P+++PLD
Sbjct: 90 SRINGISRARVQSSIKSGLVHVNGRVVDKVSFNVKSGDEIKCTIAELQNLRAVPQNIPLD 149
Query: 307 IVYEDEHVLVVNKPAHMVVHPAPGNASGTLVNGILHHCSLPTVPLS-SEVPSDEDVFDDE 131
IVYEDEHVLV+NKPAHMVVHPAPGN SGTLVNGILHHC+LP V S E SD + DDE
Sbjct: 150 IVYEDEHVLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNVEFSKDEALSDTEDSDDE 209
Query: 130 YSSSSTALSYKEGISSALSEA--SIRPGIVHRLDKGTSGLLVVAK 2
++S + S EG++S LS A SIRPGIVHRLDKGTSGLLVVAK
Sbjct: 210 FNSYISLASSCEGLNSRLSVASNSIRPGIVHRLDKGTSGLLVVAK 254
>ref|XP_004500918.1| PREDICTED: RNA pseudourine synthase 2, chloroplastic-like [Cicer
arietinum]
Length = 438
Score = 266 bits (679), Expect = 7e-69
Identities = 142/228 (62%), Positives = 173/228 (75%), Gaps = 7/228 (3%)
Frame = -3
Query: 664 KNSHNSLLMLRASNF---IIRGCSNSTVEAISD-RPTTNYSGIKLQETVD--VNSGKLRL 503
+ S +SL + F + R S ++ S+ P +NY+G++L+E VD + SGKLRL
Sbjct: 25 RTSPSSLFFFSPTKFPRGVARAVSGLADDSNSNGEPKSNYAGVRLEEIVDGEIKSGKLRL 84
Query: 502 DSWISSRINGISRARVQSSIRSGLVSVNGRVVDKVSHTLRGGDKVNCTISELQPLRAEPE 323
D+WISSRINGISRARVQSSI++GLV VNGR+VDKVS +R GD++ CTI+ELQ LRA PE
Sbjct: 85 DTWISSRINGISRARVQSSIKAGLVHVNGRLVDKVSFNVRAGDEIKCTIAELQKLRAVPE 144
Query: 322 SMPLDIVYEDEHVLVVNKPAHMVVHPAPGNASGTLVNGILHHCSLPTVPLS-SEVPSDED 146
++PLDIVYEDEH+LV+NKPAHMVVHPAPGN SGTLVNGILHHC+LP V S E SD +
Sbjct: 145 NIPLDIVYEDEHLLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNVEFSKDEALSDTE 204
Query: 145 VFDDEYSSSSTALSYKEGISSALSEASIRPGIVHRLDKGTSGLLVVAK 2
DDE + ++ EG+ S LS ASIRPGIVHRLDKGTSGLLVVAK
Sbjct: 205 DSDDELNGFTSQAPSCEGLDSRLSIASIRPGIVHRLDKGTSGLLVVAK 252
>gb|ESW08114.1| hypothetical protein PHAVU_009G019500g [Phaseolus vulgaris]
Length = 447
Score = 263 bits (673), Expect = 3e-68
Identities = 147/238 (61%), Positives = 172/238 (72%), Gaps = 8/238 (3%)
Frame = -3
Query: 691 TSIPSTKALKNSHNSLLMLRAS----NFIIRGCSNSTVEAISD-RPTTNYSGIKLQETVD 527
TS + S +SL + S + I CS T ++ SD N+SG++L+E VD
Sbjct: 14 TSTAFHSQFRTSPSSLFLYATSYKFRSTIASACSGFTGDSDSDGERKLNFSGLRLEEAVD 73
Query: 526 --VNSGKLRLDSWISSRINGISRARVQSSIRSGLVSVNGRVVDKVSHTLRGGDKVNCTIS 353
+ S KLRLDSWISSRINGISRARVQSSI+SGLV VNGRVVDK S ++ GD++ CTI+
Sbjct: 74 SRIGSAKLRLDSWISSRINGISRARVQSSIKSGLVHVNGRVVDKASFNVKAGDQIKCTIA 133
Query: 352 ELQPLRAEPESMPLDIVYEDEHVLVVNKPAHMVVHPAPGNASGTLVNGILHHCSLPTVPL 173
ELQ LRA PE++PLDIVYEDEHVLV+NKPAHMVVHPAPGN SGTLVNGILHHC+LP V
Sbjct: 134 ELQKLRAVPENIPLDIVYEDEHVLVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNVEF 193
Query: 172 SSEVP-SDEDVFDDEYSSSSTALSYKEGISSALSEASIRPGIVHRLDKGTSGLLVVAK 2
S E SD + DDE +S + S EG S S +SIRPGIVHRLDKGTSGLLVVAK
Sbjct: 194 SKEEGLSDTEDCDDEVNSYGSLASSCEGSHSRPSMSSIRPGIVHRLDKGTSGLLVVAK 251
>ref|XP_002887624.1| T4O12.25 [Arabidopsis lyrata subsp. lyrata]
gi|297333465|gb|EFH63883.1| T4O12.25 [Arabidopsis lyrata
subsp. lyrata]
Length = 930
Score = 263 bits (673), Expect = 3e-68
Identities = 143/246 (58%), Positives = 176/246 (71%), Gaps = 12/246 (4%)
Frame = -3
Query: 703 ALSWTSIPSTKALKNSHNSLLML------RASNFIIRGCSNSTVEAISDR----PTTNYS 554
+ S S+ S + +S +S L L R SNF+ + A P N +
Sbjct: 510 SFSLISVKSLRYPSSSPSSSLSLFFSFFPRVSNFVRASSGIPNLVACGPTEIIIPRVNNA 569
Query: 553 GIKLQETVDVNSGKLRLDSWISSRINGISRARVQSSIRSGLVSVNGRVVDKVSHTLRGGD 374
G++++ETVD GK+RLDSWISSR+NG+SRARVQSSIR GLV+VNGRVVDKVSH ++ GD
Sbjct: 570 GLRIEETVDALKGKIRLDSWISSRVNGVSRARVQSSIRLGLVTVNGRVVDKVSHNVKAGD 629
Query: 373 KVNCTISELQPLRAEPESMPLDIVYEDEHVLVVNKPAHMVVHPAPGNASGTLVNGILHHC 194
+VNCTISELQPL+AE E +PLDIVYED+HVLVVNKPAHMVVHPAPGN +GTLVNGILHHC
Sbjct: 630 EVNCTISELQPLKAEAEDIPLDIVYEDKHVLVVNKPAHMVVHPAPGNPTGTLVNGILHHC 689
Query: 193 SLPTVPLSS--EVPSDEDVFDDEYSSSSTALSYKEGISSALSEASIRPGIVHRLDKGTSG 20
SLP V S+ + SDE+ F D+ ++++ SY AS+RPGIVHRLDKGT+G
Sbjct: 690 SLPCVSYSNAEDDDSDEETFSDDEEMTTSSSSY---------AASVRPGIVHRLDKGTTG 740
Query: 19 LLVVAK 2
LLVVAK
Sbjct: 741 LLVVAK 746
>ref|XP_006390244.1| hypothetical protein EUTSA_v10018588mg [Eutrema salsugineum]
gi|557086678|gb|ESQ27530.1| hypothetical protein
EUTSA_v10018588mg [Eutrema salsugineum]
Length = 432
Score = 263 bits (672), Expect = 4e-68
Identities = 152/257 (59%), Positives = 185/257 (71%), Gaps = 15/257 (5%)
Frame = -3
Query: 727 MLQFSLNGALSWTSIPSTKALKNSHNSLL------------MLRASNFIIRGCSNSTVEA 584
ML S + S TS+ S ++ +S +S L +RAS+ I + S E+
Sbjct: 1 MLSISQVPSFSLTSVKSLRSPSSSSSSTLSVFFSFFPKVSRFVRASSGIPNLAACSKPES 60
Query: 583 ISDRPTTNYSGIKLQETVDVN-SGKLRLDSWISSRINGISRARVQSSIRSGLVSVNGRVV 407
I P N +G+KL+ETV+ K+RLDSWISSR++G+SRARVQSSIR GLVSVNGRVV
Sbjct: 61 I---PRVNNAGLKLEETVEAAVKAKIRLDSWISSRVHGVSRARVQSSIRLGLVSVNGRVV 117
Query: 406 DKVSHTLRGGDKVNCTISELQPLRAEPESMPLDIVYEDEHVLVVNKPAHMVVHPAPGNAS 227
DKVSH ++ GD+VNCTISELQPL+AEPE +PLDIVYED+H+LVVNKPAHMVVHPAPGN +
Sbjct: 118 DKVSHNVKAGDEVNCTISELQPLKAEPEDIPLDIVYEDKHLLVVNKPAHMVVHPAPGNPT 177
Query: 226 GTLVNGILHHCSLPTVPLSS-EVPSDEDVF-DDEYSSSSTALSYKEGISSALSEASIRPG 53
GTLVNGILHHCSLP V S+ E SDE+ DDE +SS++L+ AS+RPG
Sbjct: 178 GTLVNGILHHCSLPCVAYSNPEDDSDEETLSDDEEMTSSSSLA-----------ASVRPG 226
Query: 52 IVHRLDKGTSGLLVVAK 2
IVHRLDKGTSGLLVVAK
Sbjct: 227 IVHRLDKGTSGLLVVAK 243
>ref|NP_177732.2| RNA pseudourine synthase 2 [Arabidopsis thaliana]
gi|332197668|gb|AEE35789.1| RNA pseudourine synthase 2
[Arabidopsis thaliana]
Length = 313
Score = 261 bits (667), Expect = 2e-67
Identities = 144/254 (56%), Positives = 177/254 (69%), Gaps = 12/254 (4%)
Frame = -3
Query: 727 MLQFSLNGALSWTSIPSTKALKNSHNSLLML-----RASNFIIRGCSNSTVEAISDR--- 572
ML S + S T+ S + + +SL + + SNF+ + A S
Sbjct: 1 MLSISQLPSFSLTTAKSLRYPSSPSSSLSIFFSFFPKVSNFVRASSGIPNLVACSPTEII 60
Query: 571 -PTTNYSGIKLQETVDVNSGKLRLDSWISSRINGISRARVQSSIRSGLVSVNGRVVDKVS 395
P N +G++++E VD GK+RLDSWISSRING+SRARVQSSIR GLV+VNGRVVDKVS
Sbjct: 61 IPRVNNAGLRIEEIVDAAKGKIRLDSWISSRINGVSRARVQSSIRLGLVTVNGRVVDKVS 120
Query: 394 HTLRGGDKVNCTISELQPLRAEPESMPLDIVYEDEHVLVVNKPAHMVVHPAPGNASGTLV 215
H ++ GD+VNCTISELQPL+AE E +PLDIVYED+HVLVVNKPAHMVVHPAPGN +GTLV
Sbjct: 121 HNVKSGDEVNCTISELQPLKAEAEDIPLDIVYEDKHVLVVNKPAHMVVHPAPGNPTGTLV 180
Query: 214 NGILHHCSLPTVPLSS---EVPSDEDVFDDEYSSSSTALSYKEGISSALSEASIRPGIVH 44
NGILHHCSLP V S+ + SDE+ F D+ +++ SY AS+RPGIVH
Sbjct: 181 NGILHHCSLPCVDYSNSEEDDDSDEETFSDDEEMTTSPSSY---------AASVRPGIVH 231
Query: 43 RLDKGTSGLLVVAK 2
RLDKGT+GLLVVAK
Sbjct: 232 RLDKGTTGLLVVAK 245
>ref|NP_974151.1| RNA pseudourine synthase 2 [Arabidopsis thaliana]
gi|122215273|sp|Q3ECD0.1|PUS2_ARATH RecName: Full=RNA
pseudouridine synthase 2, chloroplastic; AltName:
Full=RNA pseudouridylate synthase 2; AltName:
Full=RNA-uridine isomerase 2; Flags: Precursor
gi|332197669|gb|AEE35790.1| RNA pseudourine synthase 2
[Arabidopsis thaliana]
Length = 430
Score = 261 bits (667), Expect = 2e-67
Identities = 144/254 (56%), Positives = 177/254 (69%), Gaps = 12/254 (4%)
Frame = -3
Query: 727 MLQFSLNGALSWTSIPSTKALKNSHNSLLML-----RASNFIIRGCSNSTVEAISDR--- 572
ML S + S T+ S + + +SL + + SNF+ + A S
Sbjct: 1 MLSISQLPSFSLTTAKSLRYPSSPSSSLSIFFSFFPKVSNFVRASSGIPNLVACSPTEII 60
Query: 571 -PTTNYSGIKLQETVDVNSGKLRLDSWISSRINGISRARVQSSIRSGLVSVNGRVVDKVS 395
P N +G++++E VD GK+RLDSWISSRING+SRARVQSSIR GLV+VNGRVVDKVS
Sbjct: 61 IPRVNNAGLRIEEIVDAAKGKIRLDSWISSRINGVSRARVQSSIRLGLVTVNGRVVDKVS 120
Query: 394 HTLRGGDKVNCTISELQPLRAEPESMPLDIVYEDEHVLVVNKPAHMVVHPAPGNASGTLV 215
H ++ GD+VNCTISELQPL+AE E +PLDIVYED+HVLVVNKPAHMVVHPAPGN +GTLV
Sbjct: 121 HNVKSGDEVNCTISELQPLKAEAEDIPLDIVYEDKHVLVVNKPAHMVVHPAPGNPTGTLV 180
Query: 214 NGILHHCSLPTVPLSS---EVPSDEDVFDDEYSSSSTALSYKEGISSALSEASIRPGIVH 44
NGILHHCSLP V S+ + SDE+ F D+ +++ SY AS+RPGIVH
Sbjct: 181 NGILHHCSLPCVDYSNSEEDDDSDEETFSDDEEMTTSPSSY---------AASVRPGIVH 231
Query: 43 RLDKGTSGLLVVAK 2
RLDKGT+GLLVVAK
Sbjct: 232 RLDKGTTGLLVVAK 245