BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Catharanthus22_contig00009585
         (759 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004246643.1| PREDICTED: RNA polymerase sigma factor sigF,...   331   2e-88
ref|XP_006354351.1| PREDICTED: RNA polymerase sigma factor sigF,...   329   5e-88
gb|EMJ06193.1| hypothetical protein PRUPE_ppa003513mg [Prunus pe...   327   3e-87
ref|XP_002276710.2| PREDICTED: RNA polymerase sigma factor rpoD ...   319   6e-85
emb|CBI32760.3| unnamed protein product [Vitis vinifera]              319   6e-85
ref|XP_006493036.1| PREDICTED: RNA polymerase sigma factor sigF,...   318   2e-84
ref|XP_006493035.1| PREDICTED: RNA polymerase sigma factor sigF,...   318   2e-84
ref|XP_006493034.1| PREDICTED: RNA polymerase sigma factor sigF,...   318   2e-84
ref|XP_006428732.1| hypothetical protein CICLE_v10011376mg [Citr...   318   2e-84
ref|XP_006428731.1| hypothetical protein CICLE_v10011376mg [Citr...   318   2e-84
ref|XP_006428730.1| hypothetical protein CICLE_v10011376mg [Citr...   318   2e-84
ref|XP_002519509.1| RNA polymerase sigma factor rpoD, putative [...   317   3e-84
ref|XP_006381426.1| RNA POLYMERASE SIGMA-70 FACTOR family protei...   315   1e-83
gb|EOY07878.1| RNA polymerase sigma factor rpoD, putative [Theob...   315   1e-83
ref|XP_002326192.1| predicted protein [Populus trichocarpa]           315   1e-83
ref|NP_565856.1| RNA polymerase sigma factor sigF [Arabidopsis t...   314   2e-83
emb|CAB60192.1| putative sigma-like transcription factor [Arabid...   314   2e-83
ref|XP_006604578.1| PREDICTED: RNA polymerase sigma factor sigF,...   313   5e-83
ref|XP_002881484.1| RNA polymerase sigma-70 factor [Arabidopsis ...   313   5e-83
ref|XP_006410875.1| hypothetical protein EUTSA_v10016472mg [Eutr...   311   2e-82

>ref|XP_004246643.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
           [Solanum lycopersicum]
          Length = 563

 Score =  331 bits (848), Expect = 2e-88
 Identities = 162/208 (77%), Positives = 182/208 (87%)
 Frame = -2

Query: 758 EGSMGLMRSIEKFKPQVGCRFATYAYWWIRQAIRKAIFQHSRTIRLPDNMYALLSKVKEA 579
           EGSMGLM+S+EKFKPQ GCRF TYAYWWIRQ++RKAIFQHSRTIRLP+N+YALLSKVK+A
Sbjct: 355 EGSMGLMKSVEKFKPQAGCRFPTYAYWWIRQSVRKAIFQHSRTIRLPENVYALLSKVKDA 414

Query: 578 KRTCIQQGSHHPTKEEIALCAGMTVEKLDKLLFTARMPLSMQQPVWSDQDTTFQEVTADT 399
           KR CI+QG+ HPTKE+IA CAGM+VE+L  LL   R PLSMQQ VWSDQDTTFQE+TAD 
Sbjct: 415 KRECIRQGNRHPTKEDIASCAGMSVERLQNLLSNVRTPLSMQQSVWSDQDTTFQEITADN 474

Query: 398 AIEAPDLSVEKQFMRLHIRNLLSILNPKERKIIRLRFGIEDGHQKSLSEIGDVFGLSKER 219
           AIEAP+LSV KQ MR HIR LL++L+PKERKIIRLRFGI DG  KSLSEIG VFGLSKER
Sbjct: 475 AIEAPELSVSKQLMRRHIRGLLNVLSPKERKIIRLRFGIGDGKPKSLSEIGAVFGLSKER 534

Query: 218 VRQLESRALYKLKQCLNSQGLKAYGNLV 135
           VRQLE+RALYKLKQ LN  GL AY +L+
Sbjct: 535 VRQLETRALYKLKQNLNKHGLDAYSDLL 562


>ref|XP_006354351.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
           [Solanum tuberosum]
          Length = 562

 Score =  329 bits (844), Expect = 5e-88
 Identities = 161/208 (77%), Positives = 182/208 (87%)
 Frame = -2

Query: 758 EGSMGLMRSIEKFKPQVGCRFATYAYWWIRQAIRKAIFQHSRTIRLPDNMYALLSKVKEA 579
           EGSMGLM+S+EKFKPQ GCRF TYAYWWIRQ++RKAIFQHSRTIRLP+N+YALLSKVK+A
Sbjct: 354 EGSMGLMKSVEKFKPQAGCRFPTYAYWWIRQSVRKAIFQHSRTIRLPENVYALLSKVKDA 413

Query: 578 KRTCIQQGSHHPTKEEIALCAGMTVEKLDKLLFTARMPLSMQQPVWSDQDTTFQEVTADT 399
           K+ CIQQG+ +PTKE+IA CAGM+VE+L  LL   R PLSMQQ VWSDQDTTFQE+TAD 
Sbjct: 414 KKECIQQGNRYPTKEDIASCAGMSVERLQNLLSNVRTPLSMQQSVWSDQDTTFQEITADN 473

Query: 398 AIEAPDLSVEKQFMRLHIRNLLSILNPKERKIIRLRFGIEDGHQKSLSEIGDVFGLSKER 219
           AIEAP+LSV KQ MR HIR LL++L+PKERKIIRLRFGI DG  KSLSEIG VFGLSKER
Sbjct: 474 AIEAPELSVSKQLMRRHIRGLLNVLSPKERKIIRLRFGIGDGKPKSLSEIGTVFGLSKER 533

Query: 218 VRQLESRALYKLKQCLNSQGLKAYGNLV 135
           VRQLE+RALYKLKQ LN  GL AY +L+
Sbjct: 534 VRQLETRALYKLKQNLNKHGLDAYSDLL 561


>gb|EMJ06193.1| hypothetical protein PRUPE_ppa003513mg [Prunus persica]
          Length = 568

 Score =  327 bits (837), Expect = 3e-87
 Identities = 157/209 (75%), Positives = 185/209 (88%)
 Frame = -2

Query: 758 EGSMGLMRSIEKFKPQVGCRFATYAYWWIRQAIRKAIFQHSRTIRLPDNMYALLSKVKEA 579
           EGSMGLM+S+EKFKPQ GCRFATYAYWWIRQ +RKAIFQHSRTIRLP+N+Y+LL KV EA
Sbjct: 360 EGSMGLMKSVEKFKPQAGCRFATYAYWWIRQTVRKAIFQHSRTIRLPENVYSLLGKVLEA 419

Query: 578 KRTCIQQGSHHPTKEEIALCAGMTVEKLDKLLFTARMPLSMQQPVWSDQDTTFQEVTADT 399
           K++CIQ+G+H+P KEE+A   G+TVEKL+KLL+  RMPLSMQQPVW+DQDTTFQEVTADT
Sbjct: 420 KKSCIQEGNHNPNKEELARRVGITVEKLEKLLYATRMPLSMQQPVWADQDTTFQEVTADT 479

Query: 398 AIEAPDLSVEKQFMRLHIRNLLSILNPKERKIIRLRFGIEDGHQKSLSEIGDVFGLSKER 219
            +E PD+SV KQ MR H+R+LLSILN +ER+IIRLR+GIEDG Q+SLSEIG +FGLSKER
Sbjct: 480 GVEIPDVSVAKQLMRQHVRHLLSILNLREREIIRLRYGIEDGKQRSLSEIGGMFGLSKER 539

Query: 218 VRQLESRALYKLKQCLNSQGLKAYGNLVL 132
           VRQLESRA  KL+Q L SQGL AYG L++
Sbjct: 540 VRQLESRAFLKLRQSLGSQGLGAYGPLLV 568


>ref|XP_002276710.2| PREDICTED: RNA polymerase sigma factor rpoD [Vitis vinifera]
          Length = 572

 Score =  319 bits (818), Expect = 6e-85
 Identities = 156/209 (74%), Positives = 179/209 (85%)
 Frame = -2

Query: 758 EGSMGLMRSIEKFKPQVGCRFATYAYWWIRQAIRKAIFQHSRTIRLPDNMYALLSKVKEA 579
           EGSMGLM S+EKFKP  GCRFA+YAYWWIRQA+RKAIFQHSRTIRLP+NMY+LL KVKEA
Sbjct: 364 EGSMGLMNSVEKFKPNAGCRFASYAYWWIRQAVRKAIFQHSRTIRLPENMYSLLGKVKEA 423

Query: 578 KRTCIQQGSHHPTKEEIALCAGMTVEKLDKLLFTARMPLSMQQPVWSDQDTTFQEVTADT 399
           KR  IQ+G H PTKEEIA   G+T+EKL +LL   RMPLSMQQPVW+DQDTTFQEVTADT
Sbjct: 424 KRLFIQEGHHDPTKEEIAERVGITIEKLQRLLLHTRMPLSMQQPVWADQDTTFQEVTADT 483

Query: 398 AIEAPDLSVEKQFMRLHIRNLLSILNPKERKIIRLRFGIEDGHQKSLSEIGDVFGLSKER 219
            IE PD+SV KQ MR H+RNLL +L PKER+IIRLRFGI DG  ++LSEIG VFG SKER
Sbjct: 484 GIEIPDVSVAKQLMRQHVRNLLHVLTPKERRIIRLRFGIGDGIPRTLSEIGLVFGFSKER 543

Query: 218 VRQLESRALYKLKQCLNSQGLKAYGNLVL 132
           VRQLE RAL+KLKQCL+S GL++Y +L++
Sbjct: 544 VRQLEQRALHKLKQCLSSHGLESYTDLLV 572


>emb|CBI32760.3| unnamed protein product [Vitis vinifera]
          Length = 561

 Score =  319 bits (818), Expect = 6e-85
 Identities = 156/209 (74%), Positives = 179/209 (85%)
 Frame = -2

Query: 758 EGSMGLMRSIEKFKPQVGCRFATYAYWWIRQAIRKAIFQHSRTIRLPDNMYALLSKVKEA 579
           EGSMGLM S+EKFKP  GCRFA+YAYWWIRQA+RKAIFQHSRTIRLP+NMY+LL KVKEA
Sbjct: 353 EGSMGLMNSVEKFKPNAGCRFASYAYWWIRQAVRKAIFQHSRTIRLPENMYSLLGKVKEA 412

Query: 578 KRTCIQQGSHHPTKEEIALCAGMTVEKLDKLLFTARMPLSMQQPVWSDQDTTFQEVTADT 399
           KR  IQ+G H PTKEEIA   G+T+EKL +LL   RMPLSMQQPVW+DQDTTFQEVTADT
Sbjct: 413 KRLFIQEGHHDPTKEEIAERVGITIEKLQRLLLHTRMPLSMQQPVWADQDTTFQEVTADT 472

Query: 398 AIEAPDLSVEKQFMRLHIRNLLSILNPKERKIIRLRFGIEDGHQKSLSEIGDVFGLSKER 219
            IE PD+SV KQ MR H+RNLL +L PKER+IIRLRFGI DG  ++LSEIG VFG SKER
Sbjct: 473 GIEIPDVSVAKQLMRQHVRNLLHVLTPKERRIIRLRFGIGDGIPRTLSEIGLVFGFSKER 532

Query: 218 VRQLESRALYKLKQCLNSQGLKAYGNLVL 132
           VRQLE RAL+KLKQCL+S GL++Y +L++
Sbjct: 533 VRQLEQRALHKLKQCLSSHGLESYTDLLV 561


>ref|XP_006493036.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
           isoform X3 [Citrus sinensis]
          Length = 561

 Score =  318 bits (814), Expect = 2e-84
 Identities = 149/209 (71%), Positives = 181/209 (86%)
 Frame = -2

Query: 758 EGSMGLMRSIEKFKPQVGCRFATYAYWWIRQAIRKAIFQHSRTIRLPDNMYALLSKVKEA 579
           EGSMGLM+S+EKFKPQ GCRFA+YAYWW+RQ IRKAIFQHSRTIRLP+N+Y LLS+V EA
Sbjct: 353 EGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSRVLEA 412

Query: 578 KRTCIQQGSHHPTKEEIALCAGMTVEKLDKLLFTARMPLSMQQPVWSDQDTTFQEVTADT 399
           KR  IQ+G+H P KE++A   G+TVEKL++L+F  RMPLSMQQPVW+DQDTTFQE+TADT
Sbjct: 413 KRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQEITADT 472

Query: 398 AIEAPDLSVEKQFMRLHIRNLLSILNPKERKIIRLRFGIEDGHQKSLSEIGDVFGLSKER 219
            +E PD+SV+KQ MR H+RNLL++LNPKER I+RLRFGIEDG  KSLSE+G++FGLSKER
Sbjct: 473 GVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKER 532

Query: 218 VRQLESRALYKLKQCLNSQGLKAYGNLVL 132
           VRQLESRALY+LKQ L  +    Y +L++
Sbjct: 533 VRQLESRALYRLKQSLGGKASYGYADLLI 561


>ref|XP_006493035.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
           isoform X2 [Citrus sinensis]
          Length = 569

 Score =  318 bits (814), Expect = 2e-84
 Identities = 149/209 (71%), Positives = 181/209 (86%)
 Frame = -2

Query: 758 EGSMGLMRSIEKFKPQVGCRFATYAYWWIRQAIRKAIFQHSRTIRLPDNMYALLSKVKEA 579
           EGSMGLM+S+EKFKPQ GCRFA+YAYWW+RQ IRKAIFQHSRTIRLP+N+Y LLS+V EA
Sbjct: 361 EGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSRVLEA 420

Query: 578 KRTCIQQGSHHPTKEEIALCAGMTVEKLDKLLFTARMPLSMQQPVWSDQDTTFQEVTADT 399
           KR  IQ+G+H P KE++A   G+TVEKL++L+F  RMPLSMQQPVW+DQDTTFQE+TADT
Sbjct: 421 KRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQEITADT 480

Query: 398 AIEAPDLSVEKQFMRLHIRNLLSILNPKERKIIRLRFGIEDGHQKSLSEIGDVFGLSKER 219
            +E PD+SV+KQ MR H+RNLL++LNPKER I+RLRFGIEDG  KSLSE+G++FGLSKER
Sbjct: 481 GVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKER 540

Query: 218 VRQLESRALYKLKQCLNSQGLKAYGNLVL 132
           VRQLESRALY+LKQ L  +    Y +L++
Sbjct: 541 VRQLESRALYRLKQSLGGKASYGYADLLI 569


>ref|XP_006493034.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
           isoform X1 [Citrus sinensis]
          Length = 570

 Score =  318 bits (814), Expect = 2e-84
 Identities = 149/209 (71%), Positives = 181/209 (86%)
 Frame = -2

Query: 758 EGSMGLMRSIEKFKPQVGCRFATYAYWWIRQAIRKAIFQHSRTIRLPDNMYALLSKVKEA 579
           EGSMGLM+S+EKFKPQ GCRFA+YAYWW+RQ IRKAIFQHSRTIRLP+N+Y LLS+V EA
Sbjct: 362 EGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSRVLEA 421

Query: 578 KRTCIQQGSHHPTKEEIALCAGMTVEKLDKLLFTARMPLSMQQPVWSDQDTTFQEVTADT 399
           KR  IQ+G+H P KE++A   G+TVEKL++L+F  RMPLSMQQPVW+DQDTTFQE+TADT
Sbjct: 422 KRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQEITADT 481

Query: 398 AIEAPDLSVEKQFMRLHIRNLLSILNPKERKIIRLRFGIEDGHQKSLSEIGDVFGLSKER 219
            +E PD+SV+KQ MR H+RNLL++LNPKER I+RLRFGIEDG  KSLSE+G++FGLSKER
Sbjct: 482 GVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKER 541

Query: 218 VRQLESRALYKLKQCLNSQGLKAYGNLVL 132
           VRQLESRALY+LKQ L  +    Y +L++
Sbjct: 542 VRQLESRALYRLKQSLGGKASYGYADLLI 570


>ref|XP_006428732.1| hypothetical protein CICLE_v10011376mg [Citrus clementina]
           gi|557530789|gb|ESR41972.1| hypothetical protein
           CICLE_v10011376mg [Citrus clementina]
          Length = 561

 Score =  318 bits (814), Expect = 2e-84
 Identities = 149/209 (71%), Positives = 181/209 (86%)
 Frame = -2

Query: 758 EGSMGLMRSIEKFKPQVGCRFATYAYWWIRQAIRKAIFQHSRTIRLPDNMYALLSKVKEA 579
           EGSMGLM+S+EKFKPQ GCRFA+YAYWW+RQ IRKAIFQHSRTIRLP+N+Y LLS+V EA
Sbjct: 353 EGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSRVLEA 412

Query: 578 KRTCIQQGSHHPTKEEIALCAGMTVEKLDKLLFTARMPLSMQQPVWSDQDTTFQEVTADT 399
           KR  IQ+G+H P KE++A   G+TVEKL++L+F  RMPLSMQQPVW+DQDTTFQE+TADT
Sbjct: 413 KRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQEITADT 472

Query: 398 AIEAPDLSVEKQFMRLHIRNLLSILNPKERKIIRLRFGIEDGHQKSLSEIGDVFGLSKER 219
            +E PD+SV+KQ MR H+RNLL++LNPKER I+RLRFGIEDG  KSLSE+G++FGLSKER
Sbjct: 473 GVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKER 532

Query: 218 VRQLESRALYKLKQCLNSQGLKAYGNLVL 132
           VRQLESRALY+LKQ L  +    Y +L++
Sbjct: 533 VRQLESRALYRLKQSLGGKASYGYADLLI 561


>ref|XP_006428731.1| hypothetical protein CICLE_v10011376mg [Citrus clementina]
           gi|557530788|gb|ESR41971.1| hypothetical protein
           CICLE_v10011376mg [Citrus clementina]
          Length = 569

 Score =  318 bits (814), Expect = 2e-84
 Identities = 149/209 (71%), Positives = 181/209 (86%)
 Frame = -2

Query: 758 EGSMGLMRSIEKFKPQVGCRFATYAYWWIRQAIRKAIFQHSRTIRLPDNMYALLSKVKEA 579
           EGSMGLM+S+EKFKPQ GCRFA+YAYWW+RQ IRKAIFQHSRTIRLP+N+Y LLS+V EA
Sbjct: 361 EGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSRVLEA 420

Query: 578 KRTCIQQGSHHPTKEEIALCAGMTVEKLDKLLFTARMPLSMQQPVWSDQDTTFQEVTADT 399
           KR  IQ+G+H P KE++A   G+TVEKL++L+F  RMPLSMQQPVW+DQDTTFQE+TADT
Sbjct: 421 KRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQEITADT 480

Query: 398 AIEAPDLSVEKQFMRLHIRNLLSILNPKERKIIRLRFGIEDGHQKSLSEIGDVFGLSKER 219
            +E PD+SV+KQ MR H+RNLL++LNPKER I+RLRFGIEDG  KSLSE+G++FGLSKER
Sbjct: 481 GVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKER 540

Query: 218 VRQLESRALYKLKQCLNSQGLKAYGNLVL 132
           VRQLESRALY+LKQ L  +    Y +L++
Sbjct: 541 VRQLESRALYRLKQSLGGKASYGYADLLI 569


>ref|XP_006428730.1| hypothetical protein CICLE_v10011376mg [Citrus clementina]
           gi|557530787|gb|ESR41970.1| hypothetical protein
           CICLE_v10011376mg [Citrus clementina]
          Length = 558

 Score =  318 bits (814), Expect = 2e-84
 Identities = 149/209 (71%), Positives = 181/209 (86%)
 Frame = -2

Query: 758 EGSMGLMRSIEKFKPQVGCRFATYAYWWIRQAIRKAIFQHSRTIRLPDNMYALLSKVKEA 579
           EGSMGLM+S+EKFKPQ GCRFA+YAYWW+RQ IRKAIFQHSRTIRLP+N+Y LLS+V EA
Sbjct: 350 EGSMGLMKSVEKFKPQAGCRFASYAYWWVRQTIRKAIFQHSRTIRLPENIYTLLSRVLEA 409

Query: 578 KRTCIQQGSHHPTKEEIALCAGMTVEKLDKLLFTARMPLSMQQPVWSDQDTTFQEVTADT 399
           KR  IQ+G+H P KE++A   G+TVEKL++L+F  RMPLSMQQPVW+DQDTTFQE+TADT
Sbjct: 410 KRLYIQEGNHSPDKEDLARRVGITVEKLERLIFITRMPLSMQQPVWADQDTTFQEITADT 469

Query: 398 AIEAPDLSVEKQFMRLHIRNLLSILNPKERKIIRLRFGIEDGHQKSLSEIGDVFGLSKER 219
            +E PD+SV+KQ MR H+RNLL++LNPKER I+RLRFGIEDG  KSLSE+G++FGLSKER
Sbjct: 470 GVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKER 529

Query: 218 VRQLESRALYKLKQCLNSQGLKAYGNLVL 132
           VRQLESRALY+LKQ L  +    Y +L++
Sbjct: 530 VRQLESRALYRLKQSLGGKASYGYADLLI 558


>ref|XP_002519509.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
           gi|223541372|gb|EEF42923.1| RNA polymerase sigma factor
           rpoD, putative [Ricinus communis]
          Length = 548

 Score =  317 bits (812), Expect = 3e-84
 Identities = 153/209 (73%), Positives = 182/209 (87%)
 Frame = -2

Query: 758 EGSMGLMRSIEKFKPQVGCRFATYAYWWIRQAIRKAIFQHSRTIRLPDNMYALLSKVKEA 579
           EGSMGLM+SIEKFKPQVGCRFATYAYWWIRQ +RKAIFQHSRTIRLP+N+Y  L KV EA
Sbjct: 340 EGSMGLMKSIEKFKPQVGCRFATYAYWWIRQTVRKAIFQHSRTIRLPENVYHTLGKVSEA 399

Query: 578 KRTCIQQGSHHPTKEEIALCAGMTVEKLDKLLFTARMPLSMQQPVWSDQDTTFQEVTADT 399
           KR+ I +G+H+PTKEE+A   G+T  +L++LL+ ARMPLSMQQ VW+DQ+TTFQE+TAD 
Sbjct: 400 KRSYIMEGNHNPTKEELAKRIGITTVRLERLLYMARMPLSMQQTVWADQETTFQEITADI 459

Query: 398 AIEAPDLSVEKQFMRLHIRNLLSILNPKERKIIRLRFGIEDGHQKSLSEIGDVFGLSKER 219
            +E P+L V KQ MR H+ +LL+ILNP+ERKIIRLR+GIEDG +KSLSEIG VFGLSKER
Sbjct: 460 EVEIPELCVAKQLMRKHVLSLLNILNPRERKIIRLRYGIEDGKKKSLSEIGSVFGLSKER 519

Query: 218 VRQLESRALYKLKQCLNSQGLKAYGNLVL 132
           VRQLESRALYKLKQCL S GL+AY +L++
Sbjct: 520 VRQLESRALYKLKQCLASHGLEAYADLLV 548


>ref|XP_006381426.1| RNA POLYMERASE SIGMA-70 FACTOR family protein [Populus trichocarpa]
           gi|550336129|gb|ERP59223.1| RNA POLYMERASE SIGMA-70
           FACTOR family protein [Populus trichocarpa]
          Length = 535

 Score =  315 bits (807), Expect = 1e-83
 Identities = 156/208 (75%), Positives = 178/208 (85%)
 Frame = -2

Query: 758 EGSMGLMRSIEKFKPQVGCRFATYAYWWIRQAIRKAIFQHSRTIRLPDNMYALLSKVKEA 579
           EG++GLM+SIEKFKPQ GCRFATYAYWWIRQ I KAIFQHSRTIRLP+N+Y LL KV EA
Sbjct: 327 EGTVGLMKSIEKFKPQAGCRFATYAYWWIRQTITKAIFQHSRTIRLPENVYGLLGKVMEA 386

Query: 578 KRTCIQQGSHHPTKEEIALCAGMTVEKLDKLLFTARMPLSMQQPVWSDQDTTFQEVTADT 399
           KR+ IQ+G+H PT EEIA   G+ ++KL+KLL   R PLSMQQ VWSDQ+TTFQE+TADT
Sbjct: 387 KRSYIQEGNHQPTAEEIARRVGIAIDKLEKLLCFTRTPLSMQQTVWSDQNTTFQEITADT 446

Query: 398 AIEAPDLSVEKQFMRLHIRNLLSILNPKERKIIRLRFGIEDGHQKSLSEIGDVFGLSKER 219
            IE PD+SV KQ MR HIR LL+IL+ KER+IIRLRFGIEDG QKSLSEIG+VFGLSKER
Sbjct: 447 EIEIPDMSVAKQLMRKHIRGLLNILSLKERRIIRLRFGIEDGKQKSLSEIGNVFGLSKER 506

Query: 218 VRQLESRALYKLKQCLNSQGLKAYGNLV 135
           VRQLESRALYKLKQC+ S GL AY +L+
Sbjct: 507 VRQLESRALYKLKQCVGSHGLDAYADLL 534


>gb|EOY07878.1| RNA polymerase sigma factor rpoD, putative [Theobroma cacao]
          Length = 568

 Score =  315 bits (807), Expect = 1e-83
 Identities = 152/209 (72%), Positives = 182/209 (87%)
 Frame = -2

Query: 758 EGSMGLMRSIEKFKPQVGCRFATYAYWWIRQAIRKAIFQHSRTIRLPDNMYALLSKVKEA 579
           EGSMGLM+S+E+FKPQVGCRFATYAYWWIRQ IRK+I QHSRT+RLP+N++ LLSKV +A
Sbjct: 360 EGSMGLMKSVERFKPQVGCRFATYAYWWIRQTIRKSIMQHSRTVRLPENVHTLLSKVLDA 419

Query: 578 KRTCIQQGSHHPTKEEIALCAGMTVEKLDKLLFTARMPLSMQQPVWSDQDTTFQEVTADT 399
           K++ I++G+H P+KEE+A   G+TVEKLDKLLFT RMPLSMQQ VW DQD TFQEVT DT
Sbjct: 420 KKSYIREGNHCPSKEELARRVGITVEKLDKLLFTTRMPLSMQQSVWVDQDITFQEVTPDT 479

Query: 398 AIEAPDLSVEKQFMRLHIRNLLSILNPKERKIIRLRFGIEDGHQKSLSEIGDVFGLSKER 219
            IE PD+SV KQ MR H+RNLLS+L+P+ER II+LRFGIE+  + SLSEIG++FGLSKER
Sbjct: 480 GIEIPDVSVAKQLMRQHVRNLLSVLSPRERTIIKLRFGIEESKENSLSEIGNMFGLSKER 539

Query: 218 VRQLESRALYKLKQCLNSQGLKAYGNLVL 132
           VRQLESRALYKLKQCLN  GL AY +L++
Sbjct: 540 VRQLESRALYKLKQCLNKHGLGAYVDLLV 568


>ref|XP_002326192.1| predicted protein [Populus trichocarpa]
          Length = 535

 Score =  315 bits (807), Expect = 1e-83
 Identities = 156/208 (75%), Positives = 178/208 (85%)
 Frame = -2

Query: 758 EGSMGLMRSIEKFKPQVGCRFATYAYWWIRQAIRKAIFQHSRTIRLPDNMYALLSKVKEA 579
           EG++GLM+SIEKFKPQ GCRFATYAYWWIRQ I KAIFQHSRTIRLP+N+Y LL KV EA
Sbjct: 327 EGTVGLMKSIEKFKPQAGCRFATYAYWWIRQTITKAIFQHSRTIRLPENVYGLLGKVMEA 386

Query: 578 KRTCIQQGSHHPTKEEIALCAGMTVEKLDKLLFTARMPLSMQQPVWSDQDTTFQEVTADT 399
           KR+ IQ+G+H PT EEIA   G+ ++KL+KLL   R PLSMQQ VWSDQ+TTFQE+TADT
Sbjct: 387 KRSYIQEGNHQPTAEEIARRVGIAIDKLEKLLCFTRTPLSMQQTVWSDQNTTFQEITADT 446

Query: 398 AIEAPDLSVEKQFMRLHIRNLLSILNPKERKIIRLRFGIEDGHQKSLSEIGDVFGLSKER 219
            IE PD+SV KQ MR HIR LL+IL+ KER+IIRLRFGIEDG QKSLSEIG+VFGLSKER
Sbjct: 447 EIEIPDMSVAKQLMRKHIRGLLNILSLKERRIIRLRFGIEDGKQKSLSEIGNVFGLSKER 506

Query: 218 VRQLESRALYKLKQCLNSQGLKAYGNLV 135
           VRQLESRALYKLKQC+ S GL AY +L+
Sbjct: 507 VRQLESRALYKLKQCVGSHGLDAYADLL 534


>ref|NP_565856.1| RNA polymerase sigma factor sigF [Arabidopsis thaliana]
           gi|75173811|sp|Q9LD95.1|SIGF_ARATH RecName: Full=RNA
           polymerase sigma factor sigF, chloroplastic; Short=Sigma
           factor F; Short=Sigma-F; AltName: Full=Protein SINGLET
           OXYGEN-LINKED DEATH ACTIVATOR 8; AltName: Full=RNA
           polymerase sigma factor sig6; Short=Atsig6; Short=Sigma
           factor 6; Flags: Precursor gi|7209640|dbj|BAA92288.1|
           SigF [Arabidopsis thaliana] gi|7688083|emb|CAB89775.1|
           sigma factor-like protein [Arabidopsis thaliana]
           gi|16604647|gb|AAL24116.1| putative RNA polymerase
           sigma-70 factor [Arabidopsis thaliana]
           gi|20197948|gb|AAD31584.2| putative RNA polymerase
           sigma-70 factor [Arabidopsis thaliana]
           gi|20259557|gb|AAM14121.1| putative RNA polymerase
           sigma-70 factor protein [Arabidopsis thaliana]
           gi|330254238|gb|AEC09332.1| RNA polymerase sigma factor
           sigF [Arabidopsis thaliana]
          Length = 547

 Score =  314 bits (804), Expect = 2e-83
 Identities = 146/209 (69%), Positives = 184/209 (88%)
 Frame = -2

Query: 758 EGSMGLMRSIEKFKPQVGCRFATYAYWWIRQAIRKAIFQHSRTIRLPDNMYALLSKVKEA 579
           EGSMGLM+S+EKFKPQ GCRFATYAYWWIRQ+IRK+IFQ+SRTIRLP+N+Y LL KV EA
Sbjct: 339 EGSMGLMKSVEKFKPQSGCRFATYAYWWIRQSIRKSIFQNSRTIRLPENVYMLLGKVSEA 398

Query: 578 KRTCIQQGSHHPTKEEIALCAGMTVEKLDKLLFTARMPLSMQQPVWSDQDTTFQEVTADT 399
           ++TC+Q+G++ P+KEE+A   G++ EKLDKLL+  R PLSMQQP+WSDQDTTFQE+T D+
Sbjct: 399 RKTCVQEGNYRPSKEELAGHVGVSTEKLDKLLYNTRTPLSMQQPIWSDQDTTFQEITPDS 458

Query: 398 AIEAPDLSVEKQFMRLHIRNLLSILNPKERKIIRLRFGIEDGHQKSLSEIGDVFGLSKER 219
            IE P +SV KQ MR H+RNLL++L+PKER+II+LRFGI+ G Q+SLSEIG+++GLSKER
Sbjct: 459 GIETPTMSVGKQLMRNHVRNLLNVLSPKERRIIKLRFGIDGGKQRSLSEIGEIYGLSKER 518

Query: 218 VRQLESRALYKLKQCLNSQGLKAYGNLVL 132
           VRQLESRALY+LKQ +NS GL AY +L++
Sbjct: 519 VRQLESRALYRLKQNMNSHGLHAYADLLV 547


>emb|CAB60192.1| putative sigma-like transcription factor [Arabidopsis thaliana]
          Length = 487

 Score =  314 bits (804), Expect = 2e-83
 Identities = 146/209 (69%), Positives = 184/209 (88%)
 Frame = -2

Query: 758 EGSMGLMRSIEKFKPQVGCRFATYAYWWIRQAIRKAIFQHSRTIRLPDNMYALLSKVKEA 579
           EGSMGLM+S+EKFKPQ GCRFATYAYWWIRQ+IRK+IFQ+SRTIRLP+N+Y LL KV EA
Sbjct: 279 EGSMGLMKSVEKFKPQSGCRFATYAYWWIRQSIRKSIFQNSRTIRLPENVYMLLGKVSEA 338

Query: 578 KRTCIQQGSHHPTKEEIALCAGMTVEKLDKLLFTARMPLSMQQPVWSDQDTTFQEVTADT 399
           ++TC+Q+G++ P+KEE+A   G++ EKLDKLL+  R PLSMQQP+WSDQDTTFQE+T D+
Sbjct: 339 RKTCVQEGNYRPSKEELAGHVGVSTEKLDKLLYNTRTPLSMQQPIWSDQDTTFQEITPDS 398

Query: 398 AIEAPDLSVEKQFMRLHIRNLLSILNPKERKIIRLRFGIEDGHQKSLSEIGDVFGLSKER 219
            IE P +SV KQ MR H+RNLL++L+PKER+II+LRFGI+ G Q+SLSEIG+++GLSKER
Sbjct: 399 GIETPTMSVGKQLMRNHVRNLLNVLSPKERRIIKLRFGIDGGKQRSLSEIGEIYGLSKER 458

Query: 218 VRQLESRALYKLKQCLNSQGLKAYGNLVL 132
           VRQLESRALY+LKQ +NS GL AY +L++
Sbjct: 459 VRQLESRALYRLKQNMNSHGLHAYADLLV 487


>ref|XP_006604578.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
           [Glycine max]
          Length = 554

 Score =  313 bits (801), Expect = 5e-83
 Identities = 149/209 (71%), Positives = 181/209 (86%)
 Frame = -2

Query: 758 EGSMGLMRSIEKFKPQVGCRFATYAYWWIRQAIRKAIFQHSRTIRLPDNMYALLSKVKEA 579
           EGS GLM+SIEKFKP+ GCRF TYAYWWIR A+RKAIF HSRTIRLP+N+Y LL KV EA
Sbjct: 346 EGSTGLMKSIEKFKPEAGCRFGTYAYWWIRHAVRKAIFLHSRTIRLPENLYTLLGKVIEA 405

Query: 578 KRTCIQQGSHHPTKEEIALCAGMTVEKLDKLLFTARMPLSMQQPVWSDQDTTFQEVTADT 399
           K++ IQ+G+ HPTKEE+A   G+T+EK+D LLF +R P+SMQQ VW+DQDTTFQE+TAD+
Sbjct: 406 KKSYIQEGNLHPTKEELARKVGITIEKMDNLLFASRNPISMQQTVWADQDTTFQEITADS 465

Query: 398 AIEAPDLSVEKQFMRLHIRNLLSILNPKERKIIRLRFGIEDGHQKSLSEIGDVFGLSKER 219
           AIE PD++V KQ MR+H+ NLL+IL+PKER IIRLRFGIEDG +K+LS+IG VFGL+KER
Sbjct: 466 AIEIPDVTVSKQLMRMHVHNLLNILSPKERGIIRLRFGIEDGEEKTLSDIGKVFGLTKER 525

Query: 218 VRQLESRALYKLKQCLNSQGLKAYGNLVL 132
           VRQLESRAL KL+QCL SQGL AY +L++
Sbjct: 526 VRQLESRALLKLRQCLESQGLDAYTDLLV 554


>ref|XP_002881484.1| RNA polymerase sigma-70 factor [Arabidopsis lyrata subsp. lyrata]
           gi|297327323|gb|EFH57743.1| RNA polymerase sigma-70
           factor [Arabidopsis lyrata subsp. lyrata]
          Length = 546

 Score =  313 bits (801), Expect = 5e-83
 Identities = 145/209 (69%), Positives = 184/209 (88%)
 Frame = -2

Query: 758 EGSMGLMRSIEKFKPQVGCRFATYAYWWIRQAIRKAIFQHSRTIRLPDNMYALLSKVKEA 579
           EGSMGLM+S+EKFKPQ GCRFATYAYWWIRQ+IRK+IFQ+SRTIRLP+N+Y LL KV EA
Sbjct: 338 EGSMGLMKSVEKFKPQSGCRFATYAYWWIRQSIRKSIFQNSRTIRLPENVYMLLGKVSEA 397

Query: 578 KRTCIQQGSHHPTKEEIALCAGMTVEKLDKLLFTARMPLSMQQPVWSDQDTTFQEVTADT 399
           ++TC+Q+G++ P+KE++A   G++ EKLDKLL+  R PLSMQQP+WSDQDTTFQE+T D+
Sbjct: 398 RKTCVQEGNYRPSKEQLAGHVGVSTEKLDKLLYNTRTPLSMQQPIWSDQDTTFQEITPDS 457

Query: 398 AIEAPDLSVEKQFMRLHIRNLLSILNPKERKIIRLRFGIEDGHQKSLSEIGDVFGLSKER 219
            IE P +SV KQ MR H+RNLL++L+PKER+II+LRFGI+ G Q+SLSEIG+++GLSKER
Sbjct: 458 GIETPTMSVGKQMMRNHVRNLLNVLSPKERRIIKLRFGIDGGKQRSLSEIGEIYGLSKER 517

Query: 218 VRQLESRALYKLKQCLNSQGLKAYGNLVL 132
           VRQLESRALY+LKQ +NS GL AY +L++
Sbjct: 518 VRQLESRALYRLKQHMNSHGLHAYADLLV 546


>ref|XP_006410875.1| hypothetical protein EUTSA_v10016472mg [Eutrema salsugineum]
           gi|557112044|gb|ESQ52328.1| hypothetical protein
           EUTSA_v10016472mg [Eutrema salsugineum]
          Length = 546

 Score =  311 bits (797), Expect = 2e-82
 Identities = 145/209 (69%), Positives = 183/209 (87%)
 Frame = -2

Query: 758 EGSMGLMRSIEKFKPQVGCRFATYAYWWIRQAIRKAIFQHSRTIRLPDNMYALLSKVKEA 579
           EGSMGLM+S+EKFKPQ GCRFATYAYWWIRQ+IRK+IFQ+SRTIRLP+N+Y LL KV EA
Sbjct: 338 EGSMGLMKSVEKFKPQSGCRFATYAYWWIRQSIRKSIFQNSRTIRLPENVYMLLGKVSEA 397

Query: 578 KRTCIQQGSHHPTKEEIALCAGMTVEKLDKLLFTARMPLSMQQPVWSDQDTTFQEVTADT 399
           ++TCIQ G++ P+KE++A   G++ EKLDKLL+  R PLSMQQP+WSDQDTTFQEVT D+
Sbjct: 398 RKTCIQDGNYRPSKEQLASHVGVSTEKLDKLLYNTRTPLSMQQPIWSDQDTTFQEVTPDS 457

Query: 398 AIEAPDLSVEKQFMRLHIRNLLSILNPKERKIIRLRFGIEDGHQKSLSEIGDVFGLSKER 219
            IE P +SV KQ MR H+RNLL++L+PKE++II+LRFGI+ G Q+SLSEIG+++GLSKER
Sbjct: 458 GIETPSMSVGKQLMRNHVRNLLNVLSPKEKRIIKLRFGIDGGKQRSLSEIGEIYGLSKER 517

Query: 218 VRQLESRALYKLKQCLNSQGLKAYGNLVL 132
           VRQLESRALY+LKQ ++S GL AY +L++
Sbjct: 518 VRQLESRALYRLKQNMSSHGLNAYADLLV 546