BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Catharanthus22_contig00009550
         (822 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002279685.1| PREDICTED: 29 kDa ribonucleoprotein B, chlor...   302   8e-80
emb|CBI33876.3| unnamed protein product [Vitis vinifera]              298   2e-78
gb|EOY23975.1| RNA-binding family protein isoform 1 [Theobroma c...   289   7e-76
gb|EOY23976.1| RNA-binding family protein isoform 2 [Theobroma c...   280   4e-73
ref|XP_004245902.1| PREDICTED: 33 kDa ribonucleoprotein, chlorop...   274   2e-71
gb|EMJ10617.1| hypothetical protein PRUPE_ppa009362mg [Prunus pe...   273   4e-71
ref|XP_004164674.1| PREDICTED: 31 kDa ribonucleoprotein, chlorop...   268   2e-69
ref|XP_004148763.1| PREDICTED: 29 kDa ribonucleoprotein B, chlor...   267   3e-69
ref|XP_006428430.1| hypothetical protein CICLE_v10012439mg [Citr...   263   7e-68
ref|XP_002527668.1| ribonucleoprotein, chloroplast, putative [Ri...   262   1e-67
ref|XP_006352864.1| PREDICTED: 28 kDa ribonucleoprotein, chlorop...   262   1e-67
ref|XP_002879549.1| hypothetical protein ARALYDRAFT_482506 [Arab...   258   2e-66
ref|XP_006294626.1| hypothetical protein CARUB_v10023663mg [Caps...   253   4e-65
ref|NP_181084.1| RNA-binding (RRM/RBD/RNP motifs) family protein...   253   4e-65
ref|XP_002326529.1| predicted protein [Populus trichocarpa] gi|5...   252   1e-64
gb|ABK96729.1| unknown [Populus trichocarpa x Populus deltoides]      251   2e-64
gb|EXB32996.1| 31 kDa ribonucleoprotein [Morus notabilis]             250   4e-64
ref|XP_006410699.1| hypothetical protein EUTSA_v10016986mg [Eutr...   249   1e-63
ref|XP_004301780.1| PREDICTED: 33 kDa ribonucleoprotein, chlorop...   245   1e-62
gb|AFK48727.1| unknown [Lotus japonicus]                              234   3e-59

>ref|XP_002279685.1| PREDICTED: 29 kDa ribonucleoprotein B, chloroplastic [Vitis
           vinifera]
          Length = 288

 Score =  302 bits (774), Expect = 8e-80
 Identities = 163/255 (63%), Positives = 193/255 (75%), Gaps = 6/255 (2%)
 Frame = +2

Query: 74  FSIFSSSCPPTSTKFPPCPRPSHPITLPMRLSFLHPSI--KSPPYSIPLLHVEPSRKPRF 247
           FS++ SS    S+K     RP  P ++ +  S   PSI  K P Y +PLL+  P+ K  F
Sbjct: 11  FSLYRSS----SSKLLFSHRP--PPSMSLHSSAFIPSICLKYPLYPLPLLYTNPTTKFSF 64

Query: 248 LVFSAVGDVAVEEKTEESQEINQKRKLFVLNLPWSLSVADIKNLFGECGTVVDVEFIRDK 427
            + S+V ++ VE K E++QE NQKRKLFVLNLPWSLSV DIKNLFGECGTV DVE I+ K
Sbjct: 65  ELCSSVQEIEVEAKPEQTQEPNQKRKLFVLNLPWSLSVVDIKNLFGECGTVTDVEIIKQK 124

Query: 428 DGKNRGFVFLTMASGDEAQAAIKKFDSYELSGRIIRVEFAKKFKKPS---RSPPADTPTR 598
           DG++RG+ F+TM SG+EAQA ++KFDSYELSGRIIRVEFAK+FKKPS     PPA  P  
Sbjct: 125 DGRSRGYAFVTMDSGEEAQAVVEKFDSYELSGRIIRVEFAKRFKKPSPPPPPPPAGPPAG 184

Query: 599 ETRYKLYLSNLGWKVRSNHLRDFFSA-FNPVSARVVFGGPSGRSAGYGFVSFATKEEAET 775
           ETR+KLY+SNL WKVRS HLR+FFS+ FNPVS RVVF  PSGRS GYGF SFATKEEAE 
Sbjct: 185 ETRHKLYVSNLAWKVRSTHLREFFSSNFNPVSVRVVFDSPSGRSGGYGFASFATKEEAEA 244

Query: 776 ALSALDGKELLSRPV 820
           A+SALDGKEL+ RPV
Sbjct: 245 AISALDGKELMGRPV 259


>emb|CBI33876.3| unnamed protein product [Vitis vinifera]
          Length = 258

 Score =  298 bits (763), Expect = 2e-78
 Identities = 150/216 (69%), Positives = 175/216 (81%), Gaps = 4/216 (1%)
 Frame = +2

Query: 185 IKSPPYSIPLLHVEPSRKPRFLVFSAVGDVAVEEKTEESQEINQKRKLFVLNLPWSLSVA 364
           +K P Y +PLL+  P+ K  F + S+V ++ VE K E++QE NQKRKLFVLNLPWSLSV 
Sbjct: 14  LKYPLYPLPLLYTNPTTKFSFELCSSVQEIEVEAKPEQTQEPNQKRKLFVLNLPWSLSVV 73

Query: 365 DIKNLFGECGTVVDVEFIRDKDGKNRGFVFLTMASGDEAQAAIKKFDSYELSGRIIRVEF 544
           DIKNLFGECGTV DVE I+ KDG++RG+ F+TM SG+EAQA ++KFDSYELSGRIIRVEF
Sbjct: 74  DIKNLFGECGTVTDVEIIKQKDGRSRGYAFVTMDSGEEAQAVVEKFDSYELSGRIIRVEF 133

Query: 545 AKKFKKPS---RSPPADTPTRETRYKLYLSNLGWKVRSNHLRDFFSA-FNPVSARVVFGG 712
           AK+FKKPS     PPA  P  ETR+KLY+SNL WKVRS HLR+FFS+ FNPVS RVVF  
Sbjct: 134 AKRFKKPSPPPPPPPAGPPAGETRHKLYVSNLAWKVRSTHLREFFSSNFNPVSVRVVFDS 193

Query: 713 PSGRSAGYGFVSFATKEEAETALSALDGKELLSRPV 820
           PSGRS GYGF SFATKEEAE A+SALDGKEL+ RPV
Sbjct: 194 PSGRSGGYGFASFATKEEAEAAISALDGKELMGRPV 229


>gb|EOY23975.1| RNA-binding family protein isoform 1 [Theobroma cacao]
          Length = 281

 Score =  289 bits (740), Expect = 7e-76
 Identities = 149/244 (61%), Positives = 187/244 (76%)
 Frame = +2

Query: 89  SSCPPTSTKFPPCPRPSHPITLPMRLSFLHPSIKSPPYSIPLLHVEPSRKPRFLVFSAVG 268
           S CP +S+K   CP+P+    L   +S    SI S  + I  L     +KP FL+ S V 
Sbjct: 13  SRCPSSSSKSLLCPKPTRLSCLISGIS-KSASILSHSFFISSL-TNSRKKPGFLLCSTVQ 70

Query: 269 DVAVEEKTEESQEINQKRKLFVLNLPWSLSVADIKNLFGECGTVVDVEFIRDKDGKNRGF 448
           +V VE +TE++Q+ N KRKLFVLNLPWS +VADIK+LFG+CG V DVE I+ KDG++R F
Sbjct: 71  EVNVEAETEKTQKSNVKRKLFVLNLPWSYTVADIKDLFGQCGNVTDVEIIKQKDGRSRNF 130

Query: 449 VFLTMASGDEAQAAIKKFDSYELSGRIIRVEFAKKFKKPSRSPPADTPTRETRYKLYLSN 628
            F+TMASG+EAQAA+ K DS+E+S RIIRVEFA++FKKPS SP    P RET +KLY+SN
Sbjct: 131 AFVTMASGEEAQAAVDKLDSHEVSARIIRVEFARRFKKPSPSPQPIVPPRETHHKLYVSN 190

Query: 629 LGWKVRSNHLRDFFSAFNPVSARVVFGGPSGRSAGYGFVSFATKEEAETALSALDGKELL 808
           L WKVRS+HLR+FFSAFNPV+ARV+FG PSG+SAGYGFVSFATKEEA+ A+S L+GKEL+
Sbjct: 191 LAWKVRSSHLREFFSAFNPVAARVIFGTPSGQSAGYGFVSFATKEEADAAISTLNGKELM 250

Query: 809 SRPV 820
            RP+
Sbjct: 251 DRPL 254


>gb|EOY23976.1| RNA-binding family protein isoform 2 [Theobroma cacao]
          Length = 248

 Score =  280 bits (716), Expect = 4e-73
 Identities = 145/237 (61%), Positives = 181/237 (76%)
 Frame = +2

Query: 89  SSCPPTSTKFPPCPRPSHPITLPMRLSFLHPSIKSPPYSIPLLHVEPSRKPRFLVFSAVG 268
           S CP +S+K   CP+P+    L   +S    SI S  + I  L     +KP FL+ S V 
Sbjct: 13  SRCPSSSSKSLLCPKPTRLSCLISGIS-KSASILSHSFFISSL-TNSRKKPGFLLCSTVQ 70

Query: 269 DVAVEEKTEESQEINQKRKLFVLNLPWSLSVADIKNLFGECGTVVDVEFIRDKDGKNRGF 448
           +V VE +TE++Q+ N KRKLFVLNLPWS +VADIK+LFG+CG V DVE I+ KDG++R F
Sbjct: 71  EVNVEAETEKTQKSNVKRKLFVLNLPWSYTVADIKDLFGQCGNVTDVEIIKQKDGRSRNF 130

Query: 449 VFLTMASGDEAQAAIKKFDSYELSGRIIRVEFAKKFKKPSRSPPADTPTRETRYKLYLSN 628
            F+TMASG+EAQAA+ K DS+E+S RIIRVEFA++FKKPS SP    P RET +KLY+SN
Sbjct: 131 AFVTMASGEEAQAAVDKLDSHEVSARIIRVEFARRFKKPSPSPQPIVPPRETHHKLYVSN 190

Query: 629 LGWKVRSNHLRDFFSAFNPVSARVVFGGPSGRSAGYGFVSFATKEEAETALSALDGK 799
           L WKVRS+HLR+FFSAFNPV+ARV+FG PSG+SAGYGFVSFATKEEA+ A+S L+GK
Sbjct: 191 LAWKVRSSHLREFFSAFNPVAARVIFGTPSGQSAGYGFVSFATKEEADAAISTLNGK 247


>ref|XP_004245902.1| PREDICTED: 33 kDa ribonucleoprotein, chloroplastic-like [Solanum
           lycopersicum]
          Length = 285

 Score =  274 bits (701), Expect = 2e-71
 Identities = 154/255 (60%), Positives = 187/255 (73%), Gaps = 7/255 (2%)
 Frame = +2

Query: 77  SIFSSSCPPTSTKFPPCPRPSHPITLPMRLSFLHPSIKSPPYSIPLLHVEPSRKPRFLVF 256
           SIFSS  PP+S+ +   P   + I L      L+ S+KS  Y +PL    PSRK    + 
Sbjct: 10  SIFSS--PPSSSSYLKFPLFPNSIKLQNYNHSLNLSLKSILYPLPL----PSRKQCTQLH 63

Query: 257 SAVGDVAV-----EEKTEESQEINQKRKLFVLNLPWSLSVADIKNLFGECGTVVDVEFIR 421
            +  +V       EEKTE+ Q+ NQ+RKLFVLNLPWSL+VADIKN+F ECG V DVE I+
Sbjct: 64  CSAVEVTEPVTVQEEKTEKPQKNNQRRKLFVLNLPWSLTVADIKNIFAECGIVDDVEIIK 123

Query: 422 DKDGKNRGFVFLTMASGDEAQAAIKKFDSYELSGRIIRVEFAKKFKKPSRSPPADTPTR- 598
            KDGK+RGF F+TM+SG+EAQAAI K DSYE+SGRIIRVEFAK+FKKP  +PP  TP + 
Sbjct: 124 TKDGKSRGFAFVTMSSGEEAQAAIDKLDSYEVSGRIIRVEFAKRFKKPPGAPPPSTPPQG 183

Query: 599 ETRYKLYLSNLGWKVRSNHLRDFFSA-FNPVSARVVFGGPSGRSAGYGFVSFATKEEAET 775
           E R+KLY+SNL WKVRS  LR+FFSA  NP+SARVVF   SGR+AGYGFV+F TKE+AE 
Sbjct: 184 EARHKLYVSNLAWKVRSTQLREFFSANNNPISARVVFDNASGRAAGYGFVTFDTKEQAEA 243

Query: 776 ALSALDGKELLSRPV 820
           ALSALDGKEL+ RP+
Sbjct: 244 ALSALDGKELMGRPI 258


>gb|EMJ10617.1| hypothetical protein PRUPE_ppa009362mg [Prunus persica]
          Length = 295

 Score =  273 bits (699), Expect = 4e-71
 Identities = 155/256 (60%), Positives = 189/256 (73%), Gaps = 8/256 (3%)
 Frame = +2

Query: 77  SIFSSSCPPTSTKFPPCPRPSHPITLPMRLSFLHPSIKSPPYSIPLLHVEPSRKPRF-LV 253
           S++SSS    S+KF   P+PS  + L +  S    S      S P +   P+RKP F L+
Sbjct: 12  SLYSSSFSSYSSKFFASPKPSTSLKLHISNSIPPISRNFLYSSPPCILNNPTRKPFFELM 71

Query: 254 FSAVGDV-----AVEEKTEESQEINQKRKLFVLNLPWSLSVADIKNLFGECGTVVDVEFI 418
            SAV +V     AVEEK EE+Q  N KRKL+V+NLPWSL+V DIKNLFGECGTV DVE I
Sbjct: 72  CSAVQEVTAEEEAVEEKAEETQTQNLKRKLYVVNLPWSLTVVDIKNLFGECGTVTDVEII 131

Query: 419 RDKDGKNRGFVFLTMASGDEAQAAIKKFDSYELSGRIIRVEFAKKFKKPSRSPPADTPTR 598
           +  +GK+RGF F+TMASG+EAQA I+KF S+E+  R IRVEFAK+FKKPS  PP +    
Sbjct: 132 KQPNGKSRGFAFVTMASGEEAQAVIEKFHSHEVLDRTIRVEFAKQFKKPS-PPPPNPQIV 190

Query: 599 ETRYKLYLSNLGWKVRSNHLRDFFSA-FN-PVSARVVFGGPSGRSAGYGFVSFATKEEAE 772
           ETRYKLY+SNLGWKVRS+HLRDF S  F  PVSARVVF GPSG+S GYGF+SFATKEEAE
Sbjct: 191 ETRYKLYVSNLGWKVRSSHLRDFVSENFKVPVSARVVFSGPSGKSGGYGFLSFATKEEAE 250

Query: 773 TALSALDGKELLSRPV 820
           +A+S+L+GKEL+ RP+
Sbjct: 251 SAISSLNGKELMGRPL 266


>ref|XP_004164674.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like [Cucumis
           sativus]
          Length = 288

 Score =  268 bits (684), Expect = 2e-69
 Identities = 141/249 (56%), Positives = 181/249 (72%), Gaps = 4/249 (1%)
 Frame = +2

Query: 86  SSSCPPTSTKFPPCPRPSHPITLPMRLSFLHPSIK---SPPYSIPLLHVEPSRKPRFLVF 256
           SSS   +   F   P P     + +R+SF  P +    + P S    +   +R     + 
Sbjct: 18  SSSSSASKLCFNKLPSP-----IKLRISFSSPLLSLNPTTPISPTSFNSSRNRGGGARLC 72

Query: 257 SAVGDVAVEEKTEESQEINQKRKLFVLNLPWSLSVADIKNLFGECGTVVDVEFIRDKDGK 436
           SA+ +V +EE +EE+Q++NQKRKL++ NLPWSLSV DIK LFG+CGTV DVE I+ K+G+
Sbjct: 73  SALQEVTLEEASEENQDVNQKRKLYIFNLPWSLSVVDIKELFGQCGTVSDVEIIKQKNGR 132

Query: 437 NRGFVFLTMASGDEAQAAIKKFDSYELSGRIIRVEFAKKFKKPSRSPPADTPTRETRYKL 616
           +RGF F+TMAS DEAQAAI+KFDS E+SGR+I+VEFAK+ KKP    P   P  ET  KL
Sbjct: 133 SRGFAFVTMASPDEAQAAIQKFDSQEISGRVIKVEFAKRLKKPPPPKPPGPPPGETVNKL 192

Query: 617 YLSNLGWKVRSNHLRDFFSA-FNPVSARVVFGGPSGRSAGYGFVSFATKEEAETALSALD 793
           Y+SNL WKVRSN+LRDFFS  FNP++ARVVF  P+GRSAGYGFVSFAT+EEA+TALS+L+
Sbjct: 193 YVSNLAWKVRSNNLRDFFSENFNPIAARVVFDSPAGRSAGYGFVSFATREEAQTALSSLE 252

Query: 794 GKELLSRPV 820
           GKEL+ RP+
Sbjct: 253 GKELMGRPL 261


>ref|XP_004148763.1| PREDICTED: 29 kDa ribonucleoprotein B, chloroplastic-like [Cucumis
           sativus]
          Length = 282

 Score =  267 bits (683), Expect = 3e-69
 Identities = 136/230 (59%), Positives = 175/230 (76%), Gaps = 4/230 (1%)
 Frame = +2

Query: 143 PITLPMRLSFLHPSIK---SPPYSIPLLHVEPSRKPRFLVFSAVGDVAVEEKTEESQEIN 313
           P  + +R+SF  P +    + P S    +   +R     + SA+ +V +EE +EE+Q++N
Sbjct: 26  PSPIKLRISFSSPLLSLNPTTPISPTSFNSSRNRGGGARLCSALQEVTLEEASEENQDVN 85

Query: 314 QKRKLFVLNLPWSLSVADIKNLFGECGTVVDVEFIRDKDGKNRGFVFLTMASGDEAQAAI 493
           QKRKL++ NLPWSLSV DIK LFG+CGTV DVE I+ K+G++RGF F+TMAS DEAQAAI
Sbjct: 86  QKRKLYIFNLPWSLSVVDIKELFGQCGTVSDVEIIKQKNGRSRGFAFVTMASPDEAQAAI 145

Query: 494 KKFDSYELSGRIIRVEFAKKFKKPSRSPPADTPTRETRYKLYLSNLGWKVRSNHLRDFFS 673
           +KFDS E+SGR+I+VEFAK+ KKP    P   P  ET  KLY+SNL WKVRSN+LRDFFS
Sbjct: 146 QKFDSQEISGRVIKVEFAKRLKKPPPPKPPGPPPGETVNKLYVSNLAWKVRSNNLRDFFS 205

Query: 674 A-FNPVSARVVFGGPSGRSAGYGFVSFATKEEAETALSALDGKELLSRPV 820
             FNP++ARVVF  P+GRSAGYGFVSFAT+EEA+TALS+L+GKEL+ RP+
Sbjct: 206 ENFNPIAARVVFDSPAGRSAGYGFVSFATREEAQTALSSLEGKELMGRPL 255


>ref|XP_006428430.1| hypothetical protein CICLE_v10012439mg [Citrus clementina]
           gi|567871683|ref|XP_006428431.1| hypothetical protein
           CICLE_v10012439mg [Citrus clementina]
           gi|567871685|ref|XP_006428432.1| hypothetical protein
           CICLE_v10012439mg [Citrus clementina]
           gi|568877400|ref|XP_006491727.1| PREDICTED:
           ribonucleoprotein At2g37220, chloroplastic-like isoform
           X1 [Citrus sinensis] gi|568877402|ref|XP_006491728.1|
           PREDICTED: ribonucleoprotein At2g37220,
           chloroplastic-like isoform X2 [Citrus sinensis]
           gi|568877404|ref|XP_006491729.1| PREDICTED:
           ribonucleoprotein At2g37220, chloroplastic-like isoform
           X3 [Citrus sinensis] gi|557530487|gb|ESR41670.1|
           hypothetical protein CICLE_v10012439mg [Citrus
           clementina] gi|557530488|gb|ESR41671.1| hypothetical
           protein CICLE_v10012439mg [Citrus clementina]
           gi|557530489|gb|ESR41672.1| hypothetical protein
           CICLE_v10012439mg [Citrus clementina]
          Length = 275

 Score =  263 bits (671), Expect = 7e-68
 Identities = 136/224 (60%), Positives = 167/224 (74%), Gaps = 1/224 (0%)
 Frame = +2

Query: 152 LPMRLSFLHPSIKSPPYSIPLLHVEPSRKPRFLVFSAVGDVAVEEKTEESQEINQKRKLF 331
           LP  +  LH S  +P     L++  P+R     V S + D  V+ K E++Q+ N +RK++
Sbjct: 27  LPHCIKLLHSSNSTPS----LIYNFPTRNVCLQVCSTLQDTTVQTKPEQTQKQNIRRKIY 82

Query: 332 VLNLPWSLSVADIKNLFGECGTVVDVEFIRDKDGKNRGFVFLTMASGDEAQAAIKKFDSY 511
           V NLPWS SVA+IKNLF  CGTVVDVE I+ K GKNR F F+TMAS +EAQAA+ +FD+ 
Sbjct: 83  VFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQ 142

Query: 512 ELSGRIIRVEFAKKFKKPSRSPPADTPTRETRYKLYLSNLGWKVRSNHLRDFFSA-FNPV 688
           E+SGRIIRVEFAKKFKKP     A  P RET++KLY+SNL WKVRS HLR+FFSA FNPV
Sbjct: 143 EVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPV 202

Query: 689 SARVVFGGPSGRSAGYGFVSFATKEEAETALSALDGKELLSRPV 820
           S++VVF    GRSAGYGFVSFATKEEAE A+S+LDGKEL+ RP+
Sbjct: 203 SSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPL 246


>ref|XP_002527668.1| ribonucleoprotein, chloroplast, putative [Ricinus communis]
           gi|223532973|gb|EEF34739.1| ribonucleoprotein,
           chloroplast, putative [Ricinus communis]
          Length = 278

 Score =  262 bits (670), Expect = 1e-67
 Identities = 132/208 (63%), Positives = 165/208 (79%), Gaps = 1/208 (0%)
 Frame = +2

Query: 200 YSIPLLHVEPSRKPRFLVFSAVGDVAVEEKTEESQEINQKRKLFVLNLPWSLSVADIKNL 379
           +S+  +H+  +RK  F  FS   ++ + E+T   QE  QKRKL+V NLPWSLSV DIKNL
Sbjct: 47  FSLSNIHLT-ARKLSFERFSTAQEIMIPEET---QETTQKRKLYVFNLPWSLSVVDIKNL 102

Query: 380 FGECGTVVDVEFIRDKDGKNRGFVFLTMASGDEAQAAIKKFDSYELSGRIIRVEFAKKFK 559
           FG+CGTV DVE I+ K+G++RGF F+T+ASG+EAQAAI K DS+E+SGRIIRVEFAK+ K
Sbjct: 103 FGQCGTVTDVEIIKQKNGRSRGFAFVTLASGEEAQAAIDKLDSHEVSGRIIRVEFAKRLK 162

Query: 560 KPSRSPPADTPTRETRYKLYLSNLGWKVRSNHLRDFFSA-FNPVSARVVFGGPSGRSAGY 736
            PS   P  T  RETR+K+Y+SNL WKVRS HLR+FFS  F+PVS+RVVF  P+GRS+GY
Sbjct: 163 PPSPPSPTGTSARETRHKIYVSNLAWKVRSTHLREFFSTNFSPVSSRVVFDSPTGRSSGY 222

Query: 737 GFVSFATKEEAETALSALDGKELLSRPV 820
           GFVSFAT+EEAE A+SALDGKEL+ RP+
Sbjct: 223 GFVSFATREEAEAAISALDGKELMGRPL 250


>ref|XP_006352864.1| PREDICTED: 28 kDa ribonucleoprotein, chloroplastic-like [Solanum
           tuberosum]
          Length = 284

 Score =  262 bits (669), Expect = 1e-67
 Identities = 146/252 (57%), Positives = 181/252 (71%), Gaps = 4/252 (1%)
 Frame = +2

Query: 77  SIFSSSCPPTSTKFPPCPRPSHPITLPMRLSFLHPSIKSPPYSIPLLHVEPSRKPRFLVF 256
           SIFSS  PP+S+ +   P   + I L      L+ S+KS    +PLL  +   +      
Sbjct: 10  SIFSSP-PPSSSSYLKFPLFPNSIKLQNSNHSLNLSLKS---ILPLLSRKQCSQLHCSAV 65

Query: 257 SAVGDVAV--EEKTEESQEINQKRKLFVLNLPWSLSVADIKNLFGECGTVVDVEFIRDKD 430
                V V  EEKTE+ Q+ N +RKLFVLNLPWSL+V DIKN+F ECG V DVE I+ +D
Sbjct: 66  EVTEPVTVQEEEKTEKPQKNNLRRKLFVLNLPWSLTVPDIKNIFAECGIVDDVEIIKTED 125

Query: 431 GKNRGFVFLTMASGDEAQAAIKKFDSYELSGRIIRVEFAKKFKKPSRSPPADTPTR-ETR 607
           GK+RGF F+TM+SG+EAQAAI K DSYE+ GRIIRVEFAK+FKKP  +PP  TP + E R
Sbjct: 126 GKSRGFAFVTMSSGEEAQAAIDKLDSYEVLGRIIRVEFAKRFKKPPGAPPPSTPPQGEAR 185

Query: 608 YKLYLSNLGWKVRSNHLRDFFSA-FNPVSARVVFGGPSGRSAGYGFVSFATKEEAETALS 784
           +KLY+SNL WKVRS  LR+FFSA +NP+SARV+F   SGR+AGYGFVSF TKE+AE A+S
Sbjct: 186 HKLYVSNLAWKVRSTQLREFFSANYNPISARVIFDNASGRAAGYGFVSFDTKEQAEAAVS 245

Query: 785 ALDGKELLSRPV 820
           ALDGKEL+ RP+
Sbjct: 246 ALDGKELMGRPI 257


>ref|XP_002879549.1| hypothetical protein ARALYDRAFT_482506 [Arabidopsis lyrata subsp.
           lyrata] gi|297325388|gb|EFH55808.1| hypothetical protein
           ARALYDRAFT_482506 [Arabidopsis lyrata subsp. lyrata]
          Length = 308

 Score =  258 bits (658), Expect = 2e-66
 Identities = 146/259 (56%), Positives = 178/259 (68%), Gaps = 12/259 (4%)
 Frame = +2

Query: 80  IFS-SSCPPTSTKFPPCPRPSHPITLPMRLSFLHPSIKSPPYSIPLLHVEPSRKPRFLVF 256
           IFS SS   +S  +  C R S     P  LS   PS  SP +S+        R    L  
Sbjct: 10  IFSFSSSSSSSNPYLFCKRSSS--LKPTALSLRLPSNLSPVFSLRSGGDNSRRLVSVLCS 67

Query: 257 ------SAVGDVAVEEKTEESQEINQKRKLFVLNLPWSLSVADIKNLFGECGTVVDVEFI 418
                 SA  + + EEKTEE+Q+ N KRKLFV NLPWS+SV DI  LFG+CGTV +VE I
Sbjct: 68  VAEKETSAEEETSQEEKTEETQKSNLKRKLFVFNLPWSMSVNDISELFGQCGTVNNVEII 127

Query: 419 RDKDGKNRGFVFLTMASGDEAQAAIKKFDSYELSGRIIRVEFAKKFKKPSRSPPADTPT- 595
           R KDGKNRGF F+TMASG+EAQAAI KFD+ ++SGRII V FA++FKKP+  PP D P+ 
Sbjct: 128 RQKDGKNRGFAFVTMASGEEAQAAIDKFDTSQVSGRIISVNFARRFKKPTPKPPNDLPSP 187

Query: 596 --RETRYKLYLSNLGWKVRSNHLRDFFSA--FNPVSARVVFGGPSGRSAGYGFVSFATKE 763
              +TR+KLY+SNL WK RS HLR+ F+A  FNPVSARVVF  P GRS+GYGFVSFAT+E
Sbjct: 188 PPGDTRHKLYVSNLAWKARSTHLRELFTASDFNPVSARVVFADPEGRSSGYGFVSFATRE 247

Query: 764 EAETALSALDGKELLSRPV 820
           EAE A++ LDGKE++ RP+
Sbjct: 248 EAEDAIAKLDGKEIMGRPI 266


>ref|XP_006294626.1| hypothetical protein CARUB_v10023663mg [Capsella rubella]
           gi|482563334|gb|EOA27524.1| hypothetical protein
           CARUB_v10023663mg [Capsella rubella]
          Length = 318

 Score =  253 bits (647), Expect = 4e-65
 Identities = 139/261 (53%), Positives = 179/261 (68%), Gaps = 13/261 (4%)
 Frame = +2

Query: 77  SIFSSSCPPTSTKFPPC-PRPSHPITLPMRLSFLHPSIKSPPYSIPLLHVEPSRKPRFLV 253
           SI S S   +S+  P    + S P    +R+    PS  SP   +    +  SR+   ++
Sbjct: 9   SILSLSSSSSSSSKPYLFSQRSKPTAFTLRI----PSNHSPVVPLGSSAINNSRRLVSVL 64

Query: 254 FSAV-------GDVAVEEKTEESQEINQKRKLFVLNLPWSLSVADIKNLFGECGTVVDVE 412
            S          + + E+KTEE+Q+ N KRKLFV NLPWS+SV DI +LF +CGTV +VE
Sbjct: 65  CSVTEKETSTEDETSQEDKTEETQKSNLKRKLFVFNLPWSMSVHDISDLFRQCGTVNNVE 124

Query: 413 FIRDKDGKNRGFVFLTMASGDEAQAAIKKFDSYELSGRIIRVEFAKKFKKPSRSPP---A 583
            IR KDGKNRGF F+TMASG+EAQAA+ KFD++E+SGRIIRV FA++FKKP+  PP    
Sbjct: 125 IIRQKDGKNRGFAFVTMASGEEAQAAVDKFDAFEVSGRIIRVNFARRFKKPTPKPPNALP 184

Query: 584 DTPTRETRYKLYLSNLGWKVRSNHLRDFFSA--FNPVSARVVFGGPSGRSAGYGFVSFAT 757
             P  +TR+KLY+SNL WK RS HLR+ F+A  FNPVSARVVF  P GRS+GYGFVSFAT
Sbjct: 185 SPPPGDTRHKLYVSNLAWKARSTHLRELFTAADFNPVSARVVFADPEGRSSGYGFVSFAT 244

Query: 758 KEEAETALSALDGKELLSRPV 820
           +EEAE A++ LDGKE++ RP+
Sbjct: 245 REEAENAITKLDGKEIMGRPI 265


>ref|NP_181084.1| RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis
           thaliana] gi|3608147|gb|AAC36180.1| putative chloroplast
           RNA binding protein precursor [Arabidopsis thaliana]
           gi|14596023|gb|AAK68739.1| putative chloroplast RNA
           binding protein precursor [Arabidopsis thaliana]
           gi|23198314|gb|AAN15684.1| putative chloroplast RNA
           binding protein precursor [Arabidopsis thaliana]
           gi|330254012|gb|AEC09106.1| RNA-binding (RRM/RBD/RNP
           motifs) family protein [Arabidopsis thaliana]
          Length = 308

 Score =  253 bits (647), Expect = 4e-65
 Identities = 143/259 (55%), Positives = 178/259 (68%), Gaps = 11/259 (4%)
 Frame = +2

Query: 77  SIFSSSCPPTSTKFPPCPRPSHPITLPMRLSFLHPSIKSPPYSIPLLHVEPSRKPRFLVF 256
           SIFS S   +S+K     + S  + L   LS   PS  SP +S+        R    L  
Sbjct: 9   SIFSFSSSSSSSKPYLFSKRSSSLKLTA-LSLRIPSNLSPVFSLRSGSDNSRRLVSVLCS 67

Query: 257 ------SAVGDVAVEEKTEESQEINQKRKLFVLNLPWSLSVADIKNLFGECGTVVDVEFI 418
                 SA  + + EEKTEE+Q  N KRKLFV NLPWS+SV DI  LFG+CGTV +VE I
Sbjct: 68  VAEKETSADEETSQEEKTEETQNSNLKRKLFVFNLPWSMSVNDISELFGQCGTVNNVEII 127

Query: 419 RDKDGKNRGFVFLTMASGDEAQAAIKKFDSYELSGRIIRVEFAKKFKKPSRSPPADTPT- 595
           R KDGKNRGF F+TMASG+EAQAAI KFD++++SGRII V FA++FKKP+   P D P+ 
Sbjct: 128 RQKDGKNRGFAFVTMASGEEAQAAIDKFDTFQVSGRIISVSFARRFKKPTPKSPNDLPSP 187

Query: 596 --RETRYKLYLSNLGWKVRSNHLRDFFSA--FNPVSARVVFGGPSGRSAGYGFVSFATKE 763
              +TR+KLY+SNL WK RS HLR+ F+A  FNPVSARVVF  P GRS+GYGFVSFAT+E
Sbjct: 188 APGDTRHKLYVSNLAWKARSTHLRELFTAADFNPVSARVVFADPEGRSSGYGFVSFATRE 247

Query: 764 EAETALSALDGKELLSRPV 820
           EAE A++ L+GKE++ RP+
Sbjct: 248 EAENAITKLNGKEIMGRPI 266


>ref|XP_002326529.1| predicted protein [Populus trichocarpa]
           gi|566146773|ref|XP_006368391.1| 33 kDa
           ribonucleoprotein [Populus trichocarpa]
           gi|550346304|gb|ERP64960.1| 33 kDa ribonucleoprotein
           [Populus trichocarpa]
          Length = 294

 Score =  252 bits (644), Expect = 1e-64
 Identities = 143/255 (56%), Positives = 183/255 (71%), Gaps = 9/255 (3%)
 Frame = +2

Query: 83  FSSSCPPTSTKFPPCPRPSHPITLPMRLSFLHPSIKS--PPYSIPLLHVEPSRKPRFLVF 256
           F S+  P+ ++F   P+ S P++L + +S   P I    P  S+   H   S+   F + 
Sbjct: 13  FFSTHHPSYSRFFLSPK-SPPLSLNLHISNPTPLISHNFPQPSLTQNHPR-SKSLCFQLC 70

Query: 257 SAVGDVAVE--EKTEESQEINQKRKLFVLNLPWSLSVADIKNLFGECGTVVDVEFIRDKD 430
           S V +V VE   + EE QE N KRKLFV+NLPWS SV DIK+LFG+CGTV DVE I+ K+
Sbjct: 71  STVQEVTVEITPEEEEIQEANLKRKLFVVNLPWSFSVVDIKDLFGQCGTVSDVEIIKQKN 130

Query: 431 GKNRGFVFLTMASGDEAQAAIKKFDSYELSGRIIRVEFAKKFKKP--SRSP--PADTPTR 598
           G++RGF F+TM +G+EAQAAI KF+S E+SGRIIRVEFAK+ ++P   R P  PAD P  
Sbjct: 131 GRSRGFAFVTMTTGEEAQAAIDKFNSLEVSGRIIRVEFAKRLRRPPSPRLPGTPADIPAG 190

Query: 599 ETRYKLYLSNLGWKVRSNHLRDFFSA-FNPVSARVVFGGPSGRSAGYGFVSFATKEEAET 775
           ETR+KLY+SNL WKVR +HLR+FFS   NPVS+RVVF GP+GRS+GYGFVSFAT+EEA  
Sbjct: 191 ETRHKLYISNLAWKVRGSHLREFFSTNCNPVSSRVVFDGPAGRSSGYGFVSFATREEAVA 250

Query: 776 ALSALDGKELLSRPV 820
           A+SA  GKEL+ RP+
Sbjct: 251 AISAFSGKELMGRPI 265


>gb|ABK96729.1| unknown [Populus trichocarpa x Populus deltoides]
          Length = 294

 Score =  251 bits (641), Expect = 2e-64
 Identities = 142/255 (55%), Positives = 183/255 (71%), Gaps = 9/255 (3%)
 Frame = +2

Query: 83  FSSSCPPTSTKFPPCPRPSHPITLPMRLSFLHPSIKS--PPYSIPLLHVEPSRKPRFLVF 256
           F S+  P+ ++F   P+ S P++L + +S   P I    P  S+   H   S+   F + 
Sbjct: 13  FFSTHHPSYSRFFLSPK-SPPLSLNLHISNPTPLISHNFPQPSLTQNHPR-SKSLCFQLC 70

Query: 257 SAVGDVAVE--EKTEESQEINQKRKLFVLNLPWSLSVADIKNLFGECGTVVDVEFIRDKD 430
           S V +V +E   + EE QE N KRKLFV+NLPWS SV DIK+LFG+CGTV DVE I+ K+
Sbjct: 71  STVQEVTMEITPEEEEIQEANLKRKLFVVNLPWSFSVVDIKDLFGQCGTVSDVEIIKQKN 130

Query: 431 GKNRGFVFLTMASGDEAQAAIKKFDSYELSGRIIRVEFAKKFKKP--SRSP--PADTPTR 598
           G++RGF F+TM +G+EAQAAI KF+S E+SGRIIRVEFAK+ ++P   R P  PAD P  
Sbjct: 131 GRSRGFAFVTMTTGEEAQAAIDKFNSLEVSGRIIRVEFAKRLRRPPSPRLPGTPADIPAG 190

Query: 599 ETRYKLYLSNLGWKVRSNHLRDFFSA-FNPVSARVVFGGPSGRSAGYGFVSFATKEEAET 775
           ETR+KLY+SNL WKVR +HLR+FFS   NPVS+RVVF GP+GRS+GYGFVSFAT+EEA  
Sbjct: 191 ETRHKLYISNLAWKVRGSHLREFFSTNCNPVSSRVVFDGPAGRSSGYGFVSFATREEAVA 250

Query: 776 ALSALDGKELLSRPV 820
           A+SA  GKEL+ RP+
Sbjct: 251 AISAFSGKELMGRPI 265


>gb|EXB32996.1| 31 kDa ribonucleoprotein [Morus notabilis]
          Length = 295

 Score =  250 bits (639), Expect = 4e-64
 Identities = 137/249 (55%), Positives = 171/249 (68%), Gaps = 4/249 (1%)
 Frame = +2

Query: 86  SSSCPPTSTKFPPCPRPSHPITLPMRLSFLHPSIKSPPYSIPLLHVEPSRKPRFLVFSAV 265
           SSS   T   FP     S  +      SFL  S ++P +S  L      +          
Sbjct: 25  SSSLSTTKLSFPRTRTHSLKLHSANSCSFLQSSTRNP-WSFRLCFSVQEQ---------- 73

Query: 266 GDVAVEEKTEES---QEINQKRKLFVLNLPWSLSVADIKNLFGECGTVVDVEFIRDKDGK 436
            ++AV+EK EE+   +E NQKRKL+V+NLPWSL+V DIK+LFG+CGTV DVE I+ KDG+
Sbjct: 74  -EIAVQEKAEETHLEKENNQKRKLYVVNLPWSLTVVDIKSLFGQCGTVTDVEIIKQKDGR 132

Query: 437 NRGFVFLTMASGDEAQAAIKKFDSYELSGRIIRVEFAKKFKKPSRSPPADTPTRETRYKL 616
           NRGF F+TMA G+EAQA I +F+  ++SGRII++E AK+FKKPS   P      ET +KL
Sbjct: 133 NRGFAFVTMACGEEAQAVIDRFNLQDVSGRIIKIELAKQFKKPSPPRPPGPQPGETTHKL 192

Query: 617 YLSNLGWKVRSNHLRDFFSA-FNPVSARVVFGGPSGRSAGYGFVSFATKEEAETALSALD 793
           Y+SN+ WKVRS HLRDF S  F PVSARVVF GP GRSAGYGFVSFAT+EEAE A+S+LD
Sbjct: 193 YVSNIEWKVRSTHLRDFVSENFKPVSARVVFDGPKGRSAGYGFVSFATREEAEAAISSLD 252

Query: 794 GKELLSRPV 820
           GKEL+ RP+
Sbjct: 253 GKELMGRPL 261


>ref|XP_006410699.1| hypothetical protein EUTSA_v10016986mg [Eutrema salsugineum]
           gi|557111868|gb|ESQ52152.1| hypothetical protein
           EUTSA_v10016986mg [Eutrema salsugineum]
          Length = 306

 Score =  249 bits (635), Expect = 1e-63
 Identities = 136/251 (54%), Positives = 172/251 (68%), Gaps = 5/251 (1%)
 Frame = +2

Query: 83  FSSSCPPTSTKFPPCPRPSHPITLPMRLSFLHPSIKSPPYSIPLLHVEPSRKPRFLVFSA 262
           FSSS   +S+K     R S P  L +R+     S+ S    +        R    L    
Sbjct: 13  FSSS---SSSKPYLFSRQSKPAALSLRIPSNFSSVFSLNVPLGSAGFNSRRLVSVLCSVT 69

Query: 263 VGDVAVEEKTEESQEINQKRKLFVLNLPWSLSVADIKNLFGECGTVVDVEFIRDKDGKNR 442
             + + +EKTEE+Q+ NQKRKLFV NLPWS+SV DI  LFG+CG V +VE I+ KDGKNR
Sbjct: 70  EEETSPDEKTEETQKSNQKRKLFVFNLPWSMSVNDISELFGQCGMVYNVEIIKQKDGKNR 129

Query: 443 GFVFLTMASGDEAQAAIKKFDSYELSGRIIRVEFAKKFKKPSRSPPADTP---TRETRYK 613
           GF F+TMASG++AQAAI K D++++SGRIIRV FAK+FKKP+  PP   P     ETR+K
Sbjct: 130 GFAFVTMASGEDAQAAIDKLDTFQVSGRIIRVNFAKRFKKPTPKPPNALPYASPGETRHK 189

Query: 614 LYLSNLGWKVRSNHLRDFFSA--FNPVSARVVFGGPSGRSAGYGFVSFATKEEAETALSA 787
           LY+SNL WK RS HLR+FF+A  FN VSARVVF  P GR++GYGFVSF T+EEAE A++ 
Sbjct: 190 LYVSNLAWKARSTHLREFFTAADFNLVSARVVFADPQGRASGYGFVSFPTREEAEAAIAK 249

Query: 788 LDGKELLSRPV 820
           L+GKEL+ RP+
Sbjct: 250 LNGKELMGRPI 260


>ref|XP_004301780.1| PREDICTED: 33 kDa ribonucleoprotein, chloroplastic-like [Fragaria
           vesca subsp. vesca]
          Length = 299

 Score =  245 bits (626), Expect = 1e-62
 Identities = 144/251 (57%), Positives = 175/251 (69%), Gaps = 16/251 (6%)
 Frame = +2

Query: 116 FPPCPRP--SHPITLPMRL-SFLHPSIKSPPYSIPLLHVEPSRKPRF-LVFSAVGDVAVE 283
           + PC     S P  L +RL SF+ P   +   S P L   P+RK  F L+ SAV ++  +
Sbjct: 14  YSPCSSKTLSFPKPLNLRLPSFIPPISHNFLLSSPPLI--PARKLSFELLCSAVQEITTQ 71

Query: 284 EKTEESQEI---------NQKRKLFVLNLPWSLSVADIKNLFGECGTVVDVEFIRDKDGK 436
           E+ +  QE          N KRKL+V+NLPWSL+VADIK LFG+CG V DVE I+  DG+
Sbjct: 72  EEEQAEQESAEEKTQKQQNLKRKLYVVNLPWSLTVADIKTLFGQCGHVKDVEIIKQMDGR 131

Query: 437 NRGFVFLTMASGDEAQAAIKKFDSYELSGRIIRVEFAKKFKKPSRSPPADTP-TRETRYK 613
           NRGF F+TMASG+EAQA I KFDS ELSGR ++VEFAK+FKKP  +P   TP  +ETRYK
Sbjct: 132 NRGFAFVTMASGEEAQAVIDKFDSQELSGRTVKVEFAKQFKKP--TPRPSTPKVQETRYK 189

Query: 614 LYLSNLGWKVRSNHLRDFFSA--FNPVSARVVFGGPSGRSAGYGFVSFATKEEAETALSA 787
           LY+SNL WK RS+HLRDF S     PVSARVVF GPSG+S GYGFVSFA  EEAE A+SA
Sbjct: 190 LYVSNLAWKARSSHLRDFVSLNFKTPVSARVVFDGPSGKSVGYGFVSFARMEEAEEAISA 249

Query: 788 LDGKELLSRPV 820
           L+G+EL+ RPV
Sbjct: 250 LNGQELMGRPV 260


>gb|AFK48727.1| unknown [Lotus japonicus]
          Length = 285

 Score =  234 bits (597), Expect = 3e-59
 Identities = 125/241 (51%), Positives = 157/241 (65%), Gaps = 21/241 (8%)
 Frame = +2

Query: 155 PMRLSFLHPSIKSPPYSIPLLHVEPSRKPRFLVFS------------------AVGDVAV 280
           P R S +H     PP  + L H   S     L  S                   V + A 
Sbjct: 13  PQRFSTIHLFPAKPPEFVKL-HASLSHSHNLLFSSNASSKTPKPCTQLCSALQEVAEAAT 71

Query: 281 EEKTEESQEINQ-KRKLFVLNLPWSLSVADIKNLFGECGTVVDVEFIRDKDGKNRGFVFL 457
           EE+ E+ Q+    K+KL+V NLPWS+S ADIK+LFG+CGTV DVE IR KDG+ +G+ F+
Sbjct: 72  EEEPEQDQQATYIKKKLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKDGRGKGYAFV 131

Query: 458 TMASGDEAQAAIKKFDSYELSGRIIRVEFAKKFKKPSRSPPADTPTRETRYKLYLSNLGW 637
           TMASG+EAQAA+ KFD+ ELSGRI+RVE AK+FKKPS   P   P  E R+ +Y SNL W
Sbjct: 132 TMASGEEAQAAVDKFDTLELSGRILRVELAKRFKKPSPPGPPSPPPSEARHVIYASNLAW 191

Query: 638 KVRSNHLRDFFSA--FNPVSARVVFGGPSGRSAGYGFVSFATKEEAETALSALDGKELLS 811
           KVRS HLR+FF+     P+SAR+VF  PSG++ GYGF+S+ TKEEAE A+SALDGKEL+ 
Sbjct: 192 KVRSTHLREFFTENFKAPLSARIVFDTPSGKTTGYGFISYLTKEEAEAAISALDGKELMG 251

Query: 812 R 814
           R
Sbjct: 252 R 252