BLASTX nr result
ID: Catharanthus22_contig00009513
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus22_contig00009513
(504 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006576082.1| PREDICTED: uncharacterized protein LOC102659... 115 3e-25
gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcrip... 107 5e-25
gb|AAC67331.1| putative non-LTR retroelement reverse transcripta... 103 6e-25
ref|XP_006599894.1| PREDICTED: uncharacterized protein LOC102668... 113 1e-24
emb|CAB72467.1| putative protein [Arabidopsis thaliana] 100 4e-24
gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transc... 100 2e-23
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ... 99 5e-23
gb|AAC63678.1| putative non-LTR retroelement reverse transcripta... 100 5e-23
gb|AAC33226.1| putative non-LTR retroelement reverse transcripta... 100 1e-22
gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana] 95 7e-22
emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulga... 99 3e-21
gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana] 100 5e-21
gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thali... 96 2e-20
gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana] 97 2e-20
gb|ABD33261.1| RNA-directed DNA polymerase (Reverse transcriptas... 96 4e-20
gb|AAF79812.1|AC020646_35 T32E20.6 [Arabidopsis thaliana] 95 6e-20
gb|AAD12028.1| putative non-LTR retroelement reverse transcripta... 86 2e-19
dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like ... 97 3e-19
dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana] 97 3e-19
emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulga... 89 9e-19
>ref|XP_006576082.1| PREDICTED: uncharacterized protein LOC102659506 [Glycine max]
Length = 964
Score = 115 bits (289), Expect(2) = 3e-25
Identities = 57/126 (45%), Positives = 81/126 (64%), Gaps = 9/126 (7%)
Frame = -2
Query: 419 RKWNLVGIDFCGAIVEFFSI---------VIVSLIPKKKHSKSVGDFRPISCCNVFYKVI 267
+ WN+VG D A+ EFF+ I+ LIPK + V FRPISCCN+ YK++
Sbjct: 839 KAWNIVGDDIFAAVNEFFTTGKILKQLNHAIIVLIPKHDQASQVNHFRPISCCNLLYKIV 898
Query: 266 TKLLASRLGKVLLTFIDGAESAFVEGRSMVEDIHLAQDFMRGYARKRTSPKFTLKVDL*K 87
+K+LA+R+ VL T I ++AF++ R M+++I L Q+ +R YARKR SP+ LK+DL K
Sbjct: 899 SKILANRIAPVLETIIGETQTAFIKNRKMMDNIFLVQEILRKYARKRPSPRCLLKIDLHK 958
Query: 86 VYDTIS 69
YD IS
Sbjct: 959 AYDFIS 964
Score = 24.6 bits (52), Expect(2) = 3e-25
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = -1
Query: 504 SVDDIKNALFDIGDDKSP*PNGYTFTFFKK 415
S + N + + ++K+P P+G+ FFKK
Sbjct: 810 SKQKVWNIISVMANNKAPGPDGFNVLFFKK 839
>gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcript_fact.hmm, score:
72.31) [Arabidopsis thaliana]
Length = 928
Score = 107 bits (267), Expect(2) = 5e-25
Identities = 53/123 (43%), Positives = 82/123 (66%), Gaps = 9/123 (7%)
Frame = -2
Query: 413 WNLVGIDFCGAIVEFFS---------IVIVSLIPKKKHSKSVGDFRPISCCNVFYKVITK 261
WN++G +F AI FF+ I++LIPKKK +K + D+RPISCCNV YKVI+K
Sbjct: 373 WNIIGAEFILAIQSFFAKGFLPKGINSTILALIPKKKEAKEMKDYRPISCCNVLYKVISK 432
Query: 260 LLASRLGKVLLTFIDGAESAFVEGRSMVEDIHLAQDFMRGYARKRTSPKFTLKVDL*KVY 81
++A+RL VL FI G +SAFV+ R ++E++ LA + ++ Y + S + LK+D+ K +
Sbjct: 433 IIANRLKLVLPKFIVGNQSAFVKDRLLIENVLLATEIVKDYHKDSVSSRCALKIDISKAF 492
Query: 80 DTI 72
D++
Sbjct: 493 DSV 495
Score = 32.7 bits (73), Expect(2) = 5e-25
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = -1
Query: 504 SVDDIKNALFDIGDDKSP*PNGYTFTFFK 418
S ++I +F + +DKSP P+GYT F+K
Sbjct: 342 SAEEIHKVVFSMPNDKSPGPDGYTAEFYK 370
>gb|AAC67331.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1449
Score = 103 bits (257), Expect(2) = 6e-25
Identities = 50/125 (40%), Positives = 82/125 (65%), Gaps = 9/125 (7%)
Frame = -2
Query: 419 RKWNLVGIDFCGAIVEFF---------SIVIVSLIPKKKHSKSVGDFRPISCCNVFYKVI 267
R W+++G +F A+ FF + I++LIPKK +K + D+RPISCCNV YKVI
Sbjct: 898 RAWDIIGAEFVLAVKSFFEKGFLPKGVNTTILALIPKKLEAKEMKDYRPISCCNVIYKVI 957
Query: 266 TKLLASRLGKVLLTFIDGAESAFVEGRSMVEDIHLAQDFMRGYARKRTSPKFTLKVDL*K 87
+K++A+RL VL FI G +SAFV+ R ++E++ LA + ++ Y + S + +K+D+ K
Sbjct: 958 SKIIANRLKHVLPNFIAGNQSAFVKDRLLIENLLLATELVKDYHKDTISGRCAIKIDISK 1017
Query: 86 VYDTI 72
+D++
Sbjct: 1018 AFDSV 1022
Score = 36.2 bits (82), Expect(2) = 6e-25
Identities = 15/30 (50%), Positives = 22/30 (73%)
Frame = -1
Query: 504 SVDDIKNALFDIGDDKSP*PNGYTFTFFKK 415
S +I+ ALF + +DKSP P+GYT F+K+
Sbjct: 869 SAKEIRGALFSMPNDKSPGPDGYTSEFYKR 898
>ref|XP_006599894.1| PREDICTED: uncharacterized protein LOC102668020 [Glycine max]
Length = 603
Score = 113 bits (282), Expect(2) = 1e-24
Identities = 54/126 (42%), Positives = 83/126 (65%), Gaps = 9/126 (7%)
Frame = -2
Query: 419 RKWNLVGIDFCGAIVEFFSI---------VIVSLIPKKKHSKSVGDFRPISCCNVFYKVI 267
+ WN++G D A+ EFF+ I++LIPK + V FRPISCCN+ YK++
Sbjct: 291 KAWNIIGDDIFEAVNEFFTTGKILKQLNHAIIALIPKHDQASQVNHFRPISCCNLLYKIV 350
Query: 266 TKLLASRLGKVLLTFIDGAESAFVEGRSMVEDIHLAQDFMRGYARKRTSPKFTLKVDL*K 87
+K+LA+R+ VL T I ++AF++ + M+++I L Q+ +R YA KR+SP+ LK+DL K
Sbjct: 351 SKILANRIAPVLETIIGETQTAFIKNKKMMDNIFLIQEILRKYAWKRSSPRCLLKIDLHK 410
Query: 86 VYDTIS 69
YD+IS
Sbjct: 411 AYDSIS 416
Score = 25.8 bits (55), Expect(2) = 1e-24
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = -1
Query: 504 SVDDIKNALFDIGDDKSP*PNGYTFTFFKK 415
S ++ N + + ++K+P P+G+ FFKK
Sbjct: 262 SKQEVWNVISVMDNNKAPGPDGFNVLFFKK 291
>emb|CAB72467.1| putative protein [Arabidopsis thaliana]
Length = 762
Score = 100 bits (250), Expect(2) = 4e-24
Identities = 51/123 (41%), Positives = 80/123 (65%), Gaps = 9/123 (7%)
Frame = -2
Query: 413 WNLVGIDFCGAIVEFFSI---------VIVSLIPKKKHSKSVGDFRPISCCNVFYKVITK 261
W ++G +F AI FF++ I++LIPKK SK + D+RPISCCNV YKVI+K
Sbjct: 38 WEILGPEFILAIQSFFALGFLPKGVNSTILALIPKKLESKEMKDYRPISCCNVMYKVISK 97
Query: 260 LLASRLGKVLLTFIDGAESAFVEGRSMVEDIHLAQDFMRGYARKRTSPKFTLKVDL*KVY 81
+LA+RL +L FI G +S+FV+ R ++E++ LA D ++ Y + S + +K+D+ K
Sbjct: 98 ILANRLKLLLPQFIAGNQSSFVKDRLLIENVLLATDLVKDYHKDSISERCAIKIDISKAS 157
Query: 80 DTI 72
D++
Sbjct: 158 DSV 160
Score = 36.2 bits (82), Expect(2) = 4e-24
Identities = 15/30 (50%), Positives = 22/30 (73%)
Frame = -1
Query: 504 SVDDIKNALFDIGDDKSP*PNGYTFTFFKK 415
S ++IK LF + +DKSP P+G+T FFK+
Sbjct: 7 SAEEIKKVLFSMPNDKSPGPDGFTSEFFKE 36
>gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transcriptase [Brassica napus]
Length = 1214
Score = 99.8 bits (247), Expect(2) = 2e-23
Identities = 49/125 (39%), Positives = 79/125 (63%), Gaps = 9/125 (7%)
Frame = -2
Query: 419 RKWNLVGIDFCGAIVEFF---------SIVIVSLIPKKKHSKSVGDFRPISCCNVFYKVI 267
+ W++VG A+ EFF + V+++PKK ++ + +FRPISCCN YKVI
Sbjct: 476 KTWSIVGPSLIAAVQEFFRSGRLLGQWNSTAVTMVPKKPNADRITEFRPISCCNAIYKVI 535
Query: 266 TKLLASRLGKVLLTFIDGAESAFVEGRSMVEDIHLAQDFMRGYARKRTSPKFTLKVDL*K 87
+KLLA RL +L +I ++SAFV+GR + E++ LA + ++G+ + S + LKVDL K
Sbjct: 536 SKLLARRLENILPLWISPSQSAFVKGRLLTENVLLATELVQGFGQANISSRGVLKVDLRK 595
Query: 86 VYDTI 72
+D++
Sbjct: 596 AFDSV 600
Score = 34.7 bits (78), Expect(2) = 2e-23
Identities = 16/30 (53%), Positives = 20/30 (66%)
Frame = -1
Query: 495 DIKNALFDIGDDKSP*PNGYTFTFFKKVES 406
DIK+ F + +KSP P+GYT FFKK S
Sbjct: 450 DIKSEFFALPSNKSPGPDGYTSEFFKKTWS 479
>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein
[Arabidopsis thaliana]
Length = 1223
Score = 99.4 bits (246), Expect(2) = 5e-23
Identities = 48/123 (39%), Positives = 80/123 (65%), Gaps = 9/123 (7%)
Frame = -2
Query: 413 WNLVGIDFCGAIVEFFS---------IVIVSLIPKKKHSKSVGDFRPISCCNVFYKVITK 261
W ++G +F A+ FF+ I++LIPKK ++ + D+RPISCCNV YKVI+K
Sbjct: 485 WEIIGDEFTLAVQSFFTKGFLPKGINSTILALIPKKTEAREMKDYRPISCCNVLYKVISK 544
Query: 260 LLASRLGKVLLTFIDGAESAFVEGRSMVEDIHLAQDFMRGYARKRTSPKFTLKVDL*KVY 81
++A+RL VL FI G +SAFV+ R ++E++ LA + ++ Y + S + +K+D+ K +
Sbjct: 545 IIANRLKLVLPKFIAGNQSAFVKDRLLIENLLLATELVKDYHKDTISTRCAIKIDISKAF 604
Query: 80 DTI 72
D++
Sbjct: 605 DSV 607
Score = 33.9 bits (76), Expect(2) = 5e-23
Identities = 14/29 (48%), Positives = 20/29 (68%)
Frame = -1
Query: 504 SVDDIKNALFDIGDDKSP*PNGYTFTFFK 418
+ ++I+ LF + DKSP P+GYT FFK
Sbjct: 454 TAEEIRKVLFRMPSDKSPGPDGYTSEFFK 482
>gb|AAC63678.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1216
Score = 100 bits (248), Expect(2) = 5e-23
Identities = 48/123 (39%), Positives = 80/123 (65%), Gaps = 9/123 (7%)
Frame = -2
Query: 413 WNLVGIDFCGAIVEFFS---------IVIVSLIPKKKHSKSVGDFRPISCCNVFYKVITK 261
W ++G + AI FF+ I++LIPKKK ++ + D+RPISCCNV YK I+K
Sbjct: 206 WEIIGDEVIIAIQSFFAKGFLPKGVNSTILALIPKKKEAREIKDYRPISCCNVLYKAISK 265
Query: 260 LLASRLGKVLLTFIDGAESAFVEGRSMVEDIHLAQDFMRGYARKRTSPKFTLKVDL*KVY 81
+LA+RL ++L FI G +SAFV+ R ++E++ LA + ++ Y + S + +K+D+ K +
Sbjct: 266 ILANRLKRILPKFIVGNQSAFVKDRLLIENVLLATELVKDYHKDSISTRCAMKIDISKAF 325
Query: 80 DTI 72
D++
Sbjct: 326 DSL 328
Score = 33.1 bits (74), Expect(2) = 5e-23
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = -1
Query: 498 DDIKNALFDIGDDKSP*PNGYTFTFFK 418
++IK +F + DKSP P+GYT F+K
Sbjct: 177 EEIKKVIFSMPKDKSPGPDGYTSEFYK 203
>gb|AAC33226.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1529
Score = 100 bits (248), Expect(2) = 1e-22
Identities = 50/123 (40%), Positives = 81/123 (65%), Gaps = 9/123 (7%)
Frame = -2
Query: 413 WNLVGIDFCGAIVEFF---------SIVIVSLIPKKKHSKSVGDFRPISCCNVFYKVITK 261
W+L G DF AI FF + I++LIPKK + + D+RPISCCNV YKVI+K
Sbjct: 782 WSLTGPDFIAAIQSFFVKGFLPKGLNATILALIPKKDEAIEMKDYRPISCCNVLYKVISK 841
Query: 260 LLASRLGKVLLTFIDGAESAFVEGRSMVEDIHLAQDFMRGYARKRTSPKFTLKVDL*KVY 81
+LA+RL +L +FI +SAFV+ R ++E++ LA + ++ Y ++ +P+ +K+D+ K +
Sbjct: 842 ILANRLKLLLPSFILQNQSAFVKERLLMENVLLATELVKDYHKESVTPRCAMKIDISKAF 901
Query: 80 DTI 72
D++
Sbjct: 902 DSV 904
Score = 31.6 bits (70), Expect(2) = 1e-22
Identities = 13/27 (48%), Positives = 20/27 (74%)
Frame = -1
Query: 498 DDIKNALFDIGDDKSP*PNGYTFTFFK 418
++I+ LF + ++KSP P+GYT FFK
Sbjct: 753 EEIQKVLFAMPNNKSPGPDGYTSEFFK 779
>gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]
Length = 872
Score = 94.7 bits (234), Expect(2) = 7e-22
Identities = 46/123 (37%), Positives = 80/123 (65%), Gaps = 9/123 (7%)
Frame = -2
Query: 413 WNLVGIDFCGAIVEFF---------SIVIVSLIPKKKHSKSVGDFRPISCCNVFYKVITK 261
W+++G +F + FF + +I++LIPKK +K + D+RPISCCNV YKVI+K
Sbjct: 132 WDIIGQEFTLPVQSFFQKGFLPKGINSIILALIPKKLAAKEMRDYRPISCCNVLYKVISK 191
Query: 260 LLASRLGKVLLTFIDGAESAFVEGRSMVEDIHLAQDFMRGYARKRTSPKFTLKVDL*KVY 81
++A+RL +L FI +SAFV+ R ++E++ LA + ++ Y + S + +K+D+ K +
Sbjct: 192 IIANRLKLLLPRFIAENQSAFVKDRLLIENLLLATELVKDYHKDSISARCAIKIDISKAF 251
Query: 80 DTI 72
D++
Sbjct: 252 DSV 254
Score = 34.7 bits (78), Expect(2) = 7e-22
Identities = 15/29 (51%), Positives = 20/29 (68%)
Frame = -1
Query: 504 SVDDIKNALFDIGDDKSP*PNGYTFTFFK 418
S ++IK LF + DKSP P+GYT F+K
Sbjct: 101 SSEEIKTVLFSMPKDKSPGPDGYTSEFYK 129
>emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1110
Score = 99.4 bits (246), Expect(2) = 3e-21
Identities = 45/125 (36%), Positives = 78/125 (62%), Gaps = 9/125 (7%)
Frame = -2
Query: 419 RKWNLVGIDFCGAIVEFFS---------IVIVSLIPKKKHSKSVGDFRPISCCNVFYKVI 267
+ W + + I EFF+ ++V+L+PK +H+ V +FRPI+CC V YK+I
Sbjct: 468 KSWGSIKQEIYAGIQEFFNNSRMHRPINCIVVTLLPKVQHATRVKEFRPIACCTVIYKII 527
Query: 266 TKLLASRLGKVLLTFIDGAESAFVEGRSMVEDIHLAQDFMRGYARKRTSPKFTLKVDL*K 87
+K+L +R+ ++ ++ A+S F+ GR + ++I LA + +RGY RK SP+ +KVD+ K
Sbjct: 528 SKMLTNRMKGIIGEVVNEAQSGFIPGRHIADNILLASELIRGYTRKHMSPRCIMKVDIRK 587
Query: 86 VYDTI 72
YD++
Sbjct: 588 AYDSV 592
Score = 28.1 bits (61), Expect(2) = 3e-21
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = -1
Query: 495 DIKNALFDIGDDKSP*PNGYTFTFFKK 415
+I AL IG+DK+P +G+ FFKK
Sbjct: 442 EIDEALAGIGNDKAPGLDGFNAYFFKK 468
>gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana]
Length = 740
Score = 100 bits (249), Expect(2) = 5e-21
Identities = 50/123 (40%), Positives = 79/123 (64%), Gaps = 9/123 (7%)
Frame = -2
Query: 413 WNLVGIDFCGAIVEFF---------SIVIVSLIPKKKHSKSVGDFRPISCCNVFYKVITK 261
W++ G DF AI FF + I++LIPKK + + D+RPISCCNV YKVI+K
Sbjct: 58 WSITGQDFIAAIKSFFIKGFLPKGLNATILALIPKKDEATLMRDYRPISCCNVIYKVISK 117
Query: 260 LLASRLGKVLLTFIDGAESAFVEGRSMVEDIHLAQDFMRGYARKRTSPKFTLKVDL*KVY 81
++A+RL +L TFI +SAFV R ++E++ LA + ++ Y + SP+ +K+D+ K +
Sbjct: 118 IIANRLKVMLPTFILQNQSAFVRERLLIENVLLATELVKDYHKDSISPRCAMKIDISKAF 177
Query: 80 DTI 72
D++
Sbjct: 178 DSV 180
Score = 26.2 bits (56), Expect(2) = 5e-21
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -1
Query: 498 DDIKNALFDIGDDKSP*PNGYTFTFFK 418
++ + LF + +K P P+GYT FFK
Sbjct: 29 EENQKVLFAMPSNKFPGPDGYTSEFFK 55
>gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thaliana]
gi|20197043|gb|AAM14892.1| putative reverse transcriptase
[Arabidopsis thaliana]
Length = 1412
Score = 96.3 bits (238), Expect(2) = 2e-20
Identities = 48/123 (39%), Positives = 79/123 (64%), Gaps = 9/123 (7%)
Frame = -2
Query: 413 WNLVGIDFCGAIVEFFSI---------VIVSLIPKKKHSKSVGDFRPISCCNVFYKVITK 261
W+++G + AI FF+ I++LIPK+ ++K + D+RPISCCNV YK I+K
Sbjct: 751 WSVIGQEVTMAIKSFFTYGFLPKGLNSTILALIPKRTYAKEMKDYRPISCCNVLYKAISK 810
Query: 260 LLASRLGKVLLTFIDGAESAFVEGRSMVEDIHLAQDFMRGYARKRTSPKFTLKVDL*KVY 81
LLA+RL +L FI +SAF+ R ++E++ LA + ++ Y + SP+ +K+DL K +
Sbjct: 811 LLANRLKCLLPEFIAPNQSAFISDRLLMENLLLASELVKDYHKDGLSPRCAMKIDLSKAF 870
Query: 80 DTI 72
D++
Sbjct: 871 DSV 873
Score = 28.1 bits (61), Expect(2) = 2e-20
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -1
Query: 495 DIKNALFDIGDDKSP*PNGYTFTFFKKVES 406
++ F I +KSP P+GYT FF++ S
Sbjct: 723 EVMKVFFSIPLNKSPGPDGYTVEFFRETWS 752
>gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]
Length = 1213
Score = 97.1 bits (240), Expect(2) = 2e-20
Identities = 53/123 (43%), Positives = 71/123 (57%), Gaps = 9/123 (7%)
Frame = -2
Query: 413 WNLVGIDFCGAIVEFFS---------IVIVSLIPKKKHSKSVGDFRPISCCNVFYKVITK 261
W++VG + AI EFFS + LIPK + DFRPISC N YKVI +
Sbjct: 479 WSIVGAEVTDAIKEFFSSGCLLKQWNATTIVLIPKIVNPTCTSDFRPISCLNTLYKVIAR 538
Query: 260 LLASRLGKVLLTFIDGAESAFVEGRSMVEDIHLAQDFMRGYARKRTSPKFTLKVDL*KVY 81
LL RL ++L I A+SAF+ GRS+ E++ LA D + GY SP+ LKVDL K +
Sbjct: 539 LLTDRLQRLLSGVISSAQSAFLPGRSLAENVLLATDLVHGYNWSNISPRGMLKVDLKKAF 598
Query: 80 DTI 72
D++
Sbjct: 599 DSV 601
Score = 27.3 bits (59), Expect(2) = 2e-20
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = -1
Query: 504 SVDDIKNALFDIGDDKSP*PNGYTFTFF 421
S +DI+ ALF + +KS P+G+T FF
Sbjct: 448 SNEDIRAALFSLPRNKSCGPDGFTAEFF 475
>gb|ABD33261.1| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
truncatula]
Length = 402
Score = 95.9 bits (237), Expect(2) = 4e-20
Identities = 46/123 (37%), Positives = 81/123 (65%), Gaps = 9/123 (7%)
Frame = -2
Query: 413 WNLVGIDFCGAIVEFF---------SIVIVSLIPKKKHSKSVGDFRPISCCNVFYKVITK 261
WN++G AI++FF + ++L+PK+ + SV +FRPI+CC+V YK+I+K
Sbjct: 153 WNIIGDSVIDAILDFFKTGFMPKIINCTYMTLLPKEVNVTSVKNFRPIACCSVIYKIISK 212
Query: 260 LLASRLGKVLLTFIDGAESAFVEGRSMVEDIHLAQDFMRGYARKRTSPKFTLKVDL*KVY 81
+L SR+ VL + + +SAFV+GR + ++I L+ + ++ Y+RK SP+ +K+DL K Y
Sbjct: 213 ILTSRMQGVLNSVVSENQSAFVKGRVIFDNIILSHELVKSYSRKGISPRCMVKIDLQKAY 272
Query: 80 DTI 72
+++
Sbjct: 273 NSV 275
Score = 27.7 bits (60), Expect(2) = 4e-20
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -1
Query: 495 DIKNALFDIGDDKSP*PNGYTFTFFK 418
++KN LF + K+P +GY FFK
Sbjct: 125 EVKNVLFSMDSSKAPGIDGYNVHFFK 150
>gb|AAF79812.1|AC020646_35 T32E20.6 [Arabidopsis thaliana]
Length = 458
Score = 95.1 bits (235), Expect(2) = 6e-20
Identities = 46/123 (37%), Positives = 79/123 (64%), Gaps = 9/123 (7%)
Frame = -2
Query: 413 WNLVGIDFCGAIVEFF---------SIVIVSLIPKKKHSKSVGDFRPISCCNVFYKVITK 261
W+++G +F AI FF + I++LIPKK + + D+RPISCCNV +KVI K
Sbjct: 226 WDIIGKEFILAIKSFFVKGFLPKAINSTILALIPKKATTNEMKDYRPISCCNVIFKVILK 285
Query: 260 LLASRLGKVLLTFIDGAESAFVEGRSMVEDIHLAQDFMRGYARKRTSPKFTLKVDL*KVY 81
++A+ L +VL F+ G +SAFV+ R ++E++ LA + ++ Y ++ S +K+D+ K +
Sbjct: 286 IIANPLKRVLPNFVVGNQSAFVQDRLLIENVLLATELVKDYHKESVSTGCAIKIDISKAF 345
Query: 80 DTI 72
D++
Sbjct: 346 DSV 348
Score = 27.7 bits (60), Expect(2) = 6e-20
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -1
Query: 498 DDIKNALFDIGDDKSP*PNGYTFTFFK 418
++IK LF + DKS P+ YT F+K
Sbjct: 197 EEIKRVLFAMPKDKSLGPDSYTMEFYK 223
>gb|AAD12028.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1447
Score = 86.3 bits (212), Expect(2) = 2e-19
Identities = 45/96 (46%), Positives = 64/96 (66%), Gaps = 9/96 (9%)
Frame = -2
Query: 413 WNLVGIDFCGAIVEFFS---------IVIVSLIPKKKHSKSVGDFRPISCCNVFYKVITK 261
W ++G +F AI FF+ I++LIPKKK +K + D+RPISCCNV YKVI+K
Sbjct: 893 WEILGNEFILAIQSFFAKGFLPKGINTTILALIPKKKEAKEMKDYRPISCCNVIYKVISK 952
Query: 260 LLASRLGKVLLTFIDGAESAFVEGRSMVEDIHLAQD 153
++A+RL V FI G +SAFV+ R ++E++ LA D
Sbjct: 953 IIANRLKLVPPKFIAGNQSAFVKDRLLIENVLLATD 988
Score = 34.7 bits (78), Expect(2) = 2e-19
Identities = 14/29 (48%), Positives = 21/29 (72%)
Frame = -1
Query: 504 SVDDIKNALFDIGDDKSP*PNGYTFTFFK 418
+ ++IK LF + +DKSP P+G+T FFK
Sbjct: 862 TAEEIKKVLFSMPNDKSPGPDGFTSEFFK 890
>dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
thaliana]
Length = 1072
Score = 96.7 bits (239), Expect(2) = 3e-19
Identities = 51/123 (41%), Positives = 76/123 (61%), Gaps = 9/123 (7%)
Frame = -2
Query: 413 WNLVGIDFCGAIVEFF---------SIVIVSLIPKKKHSKSVGDFRPISCCNVFYKVITK 261
W+++G + AI EFF + + LIPK ++ ++ +FRPISC N YKVI+K
Sbjct: 339 WSIIGPEVLAAIHEFFDSGQLLKQWNATTLVLIPKTSNACTISEFRPISCLNTLYKVISK 398
Query: 260 LLASRLGKVLLTFIDGAESAFVEGRSMVEDIHLAQDFMRGYARKRTSPKFTLKVDL*KVY 81
LL SRL +L I ++SAF+ GRS+ E++ LA + + GY R SP+ LKVDL K +
Sbjct: 399 LLTSRLQGLLSAVIGHSQSAFLPGRSLAENVLLATEMVHGYNRLNISPRGMLKVDLKKAF 458
Query: 80 DTI 72
D++
Sbjct: 459 DSV 461
Score = 23.9 bits (50), Expect(2) = 3e-19
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -1
Query: 498 DDIKNALFDIGDDKSP*PNGYTFTFFK 418
D+IK A + +K+ P+GY+ FF+
Sbjct: 310 DEIKAAFKSLPRNKTSGPDGYSVEFFR 336
>dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]
Length = 1072
Score = 96.7 bits (239), Expect(2) = 3e-19
Identities = 51/123 (41%), Positives = 76/123 (61%), Gaps = 9/123 (7%)
Frame = -2
Query: 413 WNLVGIDFCGAIVEFF---------SIVIVSLIPKKKHSKSVGDFRPISCCNVFYKVITK 261
W+++G + AI EFF + + LIPK ++ ++ +FRPISC N YKVI+K
Sbjct: 339 WSIIGPEVLAAIHEFFDSGQLLKQWNATTLVLIPKTSNACTISEFRPISCLNTLYKVISK 398
Query: 260 LLASRLGKVLLTFIDGAESAFVEGRSMVEDIHLAQDFMRGYARKRTSPKFTLKVDL*KVY 81
LL SRL +L I ++SAF+ GRS+ E++ LA + + GY R SP+ LKVDL K +
Sbjct: 399 LLTSRLQGLLSAVIGHSQSAFLPGRSLAENVLLATEMVHGYNRLNISPRGMLKVDLKKAF 458
Query: 80 DTI 72
D++
Sbjct: 459 DSV 461
Score = 23.9 bits (50), Expect(2) = 3e-19
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -1
Query: 498 DDIKNALFDIGDDKSP*PNGYTFTFFK 418
D+IK A + +K+ P+GY+ FF+
Sbjct: 310 DEIKAAFKSLPRNKTSGPDGYSVEFFR 336
>emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1114
Score = 89.4 bits (220), Expect(2) = 9e-19
Identities = 43/125 (34%), Positives = 74/125 (59%), Gaps = 9/125 (7%)
Frame = -2
Query: 419 RKWNLVGIDFCGAIVEFF---------SIVIVSLIPKKKHSKSVGDFRPISCCNVFYKVI 267
+ W ++ + I++FF + V+LIPK +K D+RPI+CC+ YK+I
Sbjct: 471 KSWLVIKQEIYEGILDFFENGFMHKPINCTAVTLIPKIDEAKHAKDYRPIACCSTLYKII 530
Query: 266 TKLLASRLGKVLLTFIDGAESAFVEGRSMVEDIHLAQDFMRGYARKRTSPKFTLKVDL*K 87
+K+L RL V+ +D A++ F+ R + ++I LA + +RGY R+ SP+ +KVD+ K
Sbjct: 531 SKILTKRLQAVITEVVDCAQTGFIPERHIGDNILLATELIRGYNRRHVSPRCVIKVDIRK 590
Query: 86 VYDTI 72
YD++
Sbjct: 591 AYDSV 595
Score = 29.6 bits (65), Expect(2) = 9e-19
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = -1
Query: 504 SVDDIKNALFDIGDDKSP*PNGYTFTFFKK 415
++ +I AL DI D K+P +G+ FFKK
Sbjct: 442 TIQEIDQALADIDDTKAPGLDGFNSVFFKK 471