BLASTX nr result

ID: Catharanthus22_contig00009355 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Catharanthus22_contig00009355
         (575 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004250726.1| PREDICTED: signal recognition particle recep...    56   6e-06
ref|XP_002265544.2| PREDICTED: signal recognition particle recep...    56   6e-06
ref|XP_006349023.1| PREDICTED: signal recognition particle recep...    56   8e-06
ref|XP_006344449.1| PREDICTED: signal recognition particle recep...    56   8e-06

>ref|XP_004250726.1| PREDICTED: signal recognition particle receptor subunit beta-like
           [Solanum lycopersicum]
          Length = 261

 Score = 56.2 bits (134), Expect = 6e-06
 Identities = 25/44 (56%), Positives = 33/44 (75%)
 Frame = +3

Query: 444 HNMVGYIFVKIFFDIVVRLFKRKSRNTIVLTGLSGSGKTFLFYQ 575
           +  VG +   +   +++RLFKR + NTIVLTGLSGSGKT+LFYQ
Sbjct: 33  YTAVGVVLFTLILLLIIRLFKRTTSNTIVLTGLSGSGKTYLFYQ 76


>ref|XP_002265544.2| PREDICTED: signal recognition particle receptor subunit beta-like
           [Vitis vinifera] gi|297739076|emb|CBI28565.3| unnamed
           protein product [Vitis vinifera]
          Length = 259

 Score = 56.2 bits (134), Expect = 6e-06
 Identities = 26/41 (63%), Positives = 31/41 (75%)
 Frame = +3

Query: 453 VGYIFVKIFFDIVVRLFKRKSRNTIVLTGLSGSGKTFLFYQ 575
           +  +FV  FF + +RLFKR   NT+VLTGLSGSGKT LFYQ
Sbjct: 34  IAVVFVTTFFLLSIRLFKRTKSNTVVLTGLSGSGKTTLFYQ 74


>ref|XP_006349023.1| PREDICTED: signal recognition particle receptor subunit beta-like
           isoform X1 [Solanum tuberosum]
           gi|565364633|ref|XP_006349024.1| PREDICTED: signal
           recognition particle receptor subunit beta-like isoform
           X2 [Solanum tuberosum] gi|565364635|ref|XP_006349025.1|
           PREDICTED: signal recognition particle receptor subunit
           beta-like isoform X3 [Solanum tuberosum]
          Length = 261

 Score = 55.8 bits (133), Expect = 8e-06
 Identities = 25/44 (56%), Positives = 33/44 (75%)
 Frame = +3

Query: 444 HNMVGYIFVKIFFDIVVRLFKRKSRNTIVLTGLSGSGKTFLFYQ 575
           +  VG +   +   +++RLFKR + NTIVLTGLSGSGKT+LFYQ
Sbjct: 33  YTAVGVVLSTLILLLIIRLFKRTTSNTIVLTGLSGSGKTYLFYQ 76


>ref|XP_006344449.1| PREDICTED: signal recognition particle receptor subunit beta-like
           isoform X1 [Solanum tuberosum]
           gi|565355118|ref|XP_006344450.1| PREDICTED: signal
           recognition particle receptor subunit beta-like isoform
           X2 [Solanum tuberosum]
          Length = 268

 Score = 55.8 bits (133), Expect = 8e-06
 Identities = 25/44 (56%), Positives = 33/44 (75%)
 Frame = +3

Query: 444 HNMVGYIFVKIFFDIVVRLFKRKSRNTIVLTGLSGSGKTFLFYQ 575
           +  VG +   +   +++RLFKR + NTIVLTGLSGSGKT+LFYQ
Sbjct: 40  YTAVGVVLSTLILLLIIRLFKRTTSNTIVLTGLSGSGKTYLFYQ 83


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