BLASTX nr result

ID: Catharanthus22_contig00009342 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Catharanthus22_contig00009342
         (1100 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006343291.1| PREDICTED: DNA-directed RNA polymerases II, ...   213   1e-52
ref|XP_004234478.1| PREDICTED: DNA-directed RNA polymerases I, I...   212   2e-52
dbj|BAD54456.1| putative RNA polymerase I, II and III 16.5 kDa s...   212   2e-52
gb|EAZ02226.1| hypothetical protein OsI_24321 [Oryza sativa Indi...   212   2e-52
ref|XP_006656427.1| PREDICTED: DNA-directed RNA polymerases II, ...   210   7e-52
ref|XP_006665034.1| PREDICTED: DNA-directed RNA polymerases II, ...   207   6e-51
gb|EMT09070.1| DNA-directed RNA polymerases I, II, and III subun...   206   2e-50
ref|NP_001051880.1| Os03g0845700 [Oryza sativa Japonica Group] g...   205   2e-50
gb|EEC76521.1| hypothetical protein OsI_14307 [Oryza sativa Indi...   205   2e-50
gb|ACG27451.1| DNA-directed RNA polymerases I, II, and III 17.1 ...   204   5e-50
ref|XP_004152137.1| PREDICTED: DNA-directed RNA polymerases I, I...   202   1e-49
ref|NP_001147399.1| LOC100281008 [Zea mays] gi|194699730|gb|ACF8...   202   1e-49
ref|XP_003580476.1| PREDICTED: DNA-directed RNA polymerases I, I...   202   3e-49
ref|XP_003563485.1| PREDICTED: DNA-directed RNA polymerases I, I...   201   6e-49
ref|XP_002463525.1| hypothetical protein SORBIDRAFT_01g001420 [S...   200   1e-48
ref|XP_002466106.1| hypothetical protein SORBIDRAFT_01g001330 [S...   199   2e-48
gb|ABK26380.1| unknown [Picea sitchensis]                             197   5e-48
gb|EMJ13247.1| hypothetical protein PRUPE_ppa011397mg [Prunus pe...   194   4e-47
gb|EXB86762.1| DNA-directed RNA polymerases I, II, and III subun...   194   7e-47
ref|XP_002274171.1| PREDICTED: DNA-directed RNA polymerases I, I...   192   3e-46

>ref|XP_006343291.1| PREDICTED: DNA-directed RNA polymerases II, IV and V subunit
           8B-like [Solanum tuberosum]
          Length = 145

 Score =  213 bits (541), Expect = 1e-52
 Identities = 104/145 (71%), Positives = 125/145 (86%), Gaps = 2/145 (1%)
 Frame = +3

Query: 351 MSDTLFEDIFTITDVDPGGKKFDRVNRIVAKSERFDMYMQLDINTDIYPMRKGEKFLMEL 530
           M +TLFEDIFT+T  DP GKKFDRVNRI A+SE+FDM+M LDINT+IYPMR  +KF+M L
Sbjct: 1   MVETLFEDIFTVTQKDPDGKKFDRVNRIEARSEQFDMFMLLDINTEIYPMRVKDKFMMVL 60

Query: 531 APTLNLDGTPDTGYFTQGNRKSLADKYEYVMHGKLYKITED--KRTGKADILASFGGLLM 704
           A TLNLDGTPDTGYF QGN+KSLADK+EYVMHGKLY+I+E+   +  KADI  SFGGLLM
Sbjct: 61  ASTLNLDGTPDTGYFIQGNKKSLADKFEYVMHGKLYRISEEGSGKHVKADIFVSFGGLLM 120

Query: 705 WMKGDRTVAAKFELDQRLFILIRKV 779
            ++GD ++AAKFELDQ++F+LIRKV
Sbjct: 121 QLRGDPSIAAKFELDQKIFLLIRKV 145


>ref|XP_004234478.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           rpabc3-like isoform 1 [Solanum lycopersicum]
           gi|460377396|ref|XP_004234479.1| PREDICTED: DNA-directed
           RNA polymerases I, II, and III subunit rpabc3-like
           isoform 2 [Solanum lycopersicum]
          Length = 145

 Score =  212 bits (540), Expect = 2e-52
 Identities = 103/145 (71%), Positives = 125/145 (86%), Gaps = 2/145 (1%)
 Frame = +3

Query: 351 MSDTLFEDIFTITDVDPGGKKFDRVNRIVAKSERFDMYMQLDINTDIYPMRKGEKFLMEL 530
           M +TLFEDIFT+T  DP GKKFDRVNRI A+SE+FDM+M LD+NT+IYPMR  +KF+M L
Sbjct: 1   MVETLFEDIFTVTQKDPDGKKFDRVNRIEARSEQFDMFMLLDVNTEIYPMRVKDKFMMVL 60

Query: 531 APTLNLDGTPDTGYFTQGNRKSLADKYEYVMHGKLYKITED--KRTGKADILASFGGLLM 704
           A TLNLDGTPDTGYF QGN+KSLADK+EYVMHGKLY+I+E+   +  KADI  SFGGLLM
Sbjct: 61  ASTLNLDGTPDTGYFIQGNKKSLADKFEYVMHGKLYRISEEGSGKHVKADIFVSFGGLLM 120

Query: 705 WMKGDRTVAAKFELDQRLFILIRKV 779
            ++GD ++AAKFELDQ++F+LIRKV
Sbjct: 121 QLRGDPSIAAKFELDQKIFLLIRKV 145


>dbj|BAD54456.1| putative RNA polymerase I, II and III 16.5 kDa subunit [Oryza
           sativa Japonica Group]
          Length = 396

 Score =  212 bits (539), Expect = 2e-52
 Identities = 102/147 (69%), Positives = 125/147 (85%), Gaps = 3/147 (2%)
 Frame = +3

Query: 348 RMSDTLFEDIFTITDVDPGGKKFDRVNRIVAKSERFDMYMQLDINTDIYPMRKGEKFLME 527
           +M + LFEDIFT+T +DP GKKFDRV+RI A+SE+FDMYMQLD+ T++YPMR G++F M 
Sbjct: 250 KMVEHLFEDIFTVTRLDPDGKKFDRVSRIEARSEQFDMYMQLDVATEVYPMRAGDRFTMV 309

Query: 528 LAPTLNLDGTPDTGYFTQGNRKSLADKYEYVMHGKLYKITEDKRTG---KADILASFGGL 698
           LAPTLNLDGTPDTG++TQ  RK+LADK++YVMHGKLYKI+ED  +G   K +I ASFGGL
Sbjct: 310 LAPTLNLDGTPDTGFYTQAGRKTLADKFDYVMHGKLYKISEDSSSGQATKVEIYASFGGL 369

Query: 699 LMWMKGDRTVAAKFELDQRLFILIRKV 779
           LM +KGD + AA FELDQRLF+LIRKV
Sbjct: 370 LMMLKGDPSSAASFELDQRLFLLIRKV 396


>gb|EAZ02226.1| hypothetical protein OsI_24321 [Oryza sativa Indica Group]
           gi|125598367|gb|EAZ38147.1| hypothetical protein
           OsJ_22498 [Oryza sativa Japonica Group]
          Length = 191

 Score =  212 bits (539), Expect = 2e-52
 Identities = 102/147 (69%), Positives = 125/147 (85%), Gaps = 3/147 (2%)
 Frame = +3

Query: 348 RMSDTLFEDIFTITDVDPGGKKFDRVNRIVAKSERFDMYMQLDINTDIYPMRKGEKFLME 527
           +M + LFEDIFT+T +DP GKKFDRV+RI A+SE+FDMYMQLD+ T++YPMR G++F M 
Sbjct: 45  KMVEHLFEDIFTVTRLDPDGKKFDRVSRIEARSEQFDMYMQLDVATEVYPMRAGDRFTMV 104

Query: 528 LAPTLNLDGTPDTGYFTQGNRKSLADKYEYVMHGKLYKITEDKRTG---KADILASFGGL 698
           LAPTLNLDGTPDTG++TQ  RK+LADK++YVMHGKLYKI+ED  +G   K +I ASFGGL
Sbjct: 105 LAPTLNLDGTPDTGFYTQAGRKTLADKFDYVMHGKLYKISEDSSSGQATKVEIYASFGGL 164

Query: 699 LMWMKGDRTVAAKFELDQRLFILIRKV 779
           LM +KGD + AA FELDQRLF+LIRKV
Sbjct: 165 LMMLKGDPSSAASFELDQRLFLLIRKV 191


>ref|XP_006656427.1| PREDICTED: DNA-directed RNA polymerases II, IV and V subunit
           8B-like isoform X1 [Oryza brachyantha]
           gi|573948243|ref|XP_006656428.1| PREDICTED: DNA-directed
           RNA polymerases II, IV and V subunit 8B-like isoform X2
           [Oryza brachyantha] gi|573948245|ref|XP_006656429.1|
           PREDICTED: DNA-directed RNA polymerases II, IV and V
           subunit 8B-like isoform X3 [Oryza brachyantha]
           gi|573948247|ref|XP_006656430.1| PREDICTED: DNA-directed
           RNA polymerases II, IV and V subunit 8B-like isoform X4
           [Oryza brachyantha] gi|573948249|ref|XP_006656431.1|
           PREDICTED: DNA-directed RNA polymerases II, IV and V
           subunit 8B-like isoform X5 [Oryza brachyantha]
          Length = 146

 Score =  210 bits (535), Expect = 7e-52
 Identities = 103/146 (70%), Positives = 122/146 (83%), Gaps = 3/146 (2%)
 Frame = +3

Query: 351 MSDTLFEDIFTITDVDPGGKKFDRVNRIVAKSERFDMYMQLDINTDIYPMRKGEKFLMEL 530
           M + LFEDIFT+T +DP GKKFDRV+RI A+SE+FDMYMQLD+ T++YPMR G+KF M L
Sbjct: 1   MVEHLFEDIFTVTRLDPDGKKFDRVSRIEARSEQFDMYMQLDVATEVYPMRPGDKFTMVL 60

Query: 531 APTLNLDGTPDTGYFTQGNRKSLADKYEYVMHGKLYKITEDKRTG---KADILASFGGLL 701
           APTLNLDGTPD G++TQ  RK+LADKY+YVMHGKLYKI+ED   G   K +I ASFGGLL
Sbjct: 61  APTLNLDGTPDIGFYTQAGRKTLADKYDYVMHGKLYKISEDGSGGQATKVEIYASFGGLL 120

Query: 702 MWMKGDRTVAAKFELDQRLFILIRKV 779
           M +KGD + AA FELDQRLF+LIRKV
Sbjct: 121 MMLKGDPSTAANFELDQRLFLLIRKV 146


>ref|XP_006665034.1| PREDICTED: DNA-directed RNA polymerases II, IV and V subunit
           8B-like [Oryza brachyantha]
          Length = 147

 Score =  207 bits (527), Expect = 6e-51
 Identities = 100/147 (68%), Positives = 122/147 (82%), Gaps = 4/147 (2%)
 Frame = +3

Query: 351 MSDTLFEDIFTITDVDPGGKKFDRVNRIVAKSERFDMYMQLDINTDIYPMRKGEKFLMEL 530
           M++ LFEDIFT+T +DP GKKFDRV+RI A++E+ ++YMQLD+ TD+YPM  G+KF M L
Sbjct: 1   MAEFLFEDIFTVTRLDPDGKKFDRVSRIEARNEQLNVYMQLDVATDVYPMHPGDKFTMVL 60

Query: 531 APTLNLDGTPDTGYFTQGNRKSLADKYEYVMHGKLYKITEDKRT----GKADILASFGGL 698
            PTLNLDGTPDTG+FTQ  RK+LADKYEYVMHGKLYKI+EDK T     K ++ ASFGGL
Sbjct: 61  VPTLNLDGTPDTGFFTQAGRKTLADKYEYVMHGKLYKISEDKETSGQNAKVEMYASFGGL 120

Query: 699 LMWMKGDRTVAAKFELDQRLFILIRKV 779
           LM +KGD + AA FELDQRLF+L+RKV
Sbjct: 121 LMMLKGDPSSAANFELDQRLFLLMRKV 147


>gb|EMT09070.1| DNA-directed RNA polymerases I, II, and III subunit rpabc3
           [Aegilops tauschii]
          Length = 220

 Score =  206 bits (523), Expect = 2e-50
 Identities = 102/148 (68%), Positives = 120/148 (81%), Gaps = 5/148 (3%)
 Frame = +3

Query: 351 MSDTLFEDIFTITDVDPGGKKFDRVNRIVAKSERFDMYMQLDINTDIYPMRKGEKFLMEL 530
           M++ LFEDIF +T +DP GKKFDRVNRI A+SE+ +MYMQLDI TD+YPM  G+KF M L
Sbjct: 1   MAEHLFEDIFHVTRIDPDGKKFDRVNRIEARSEQLEMYMQLDIATDVYPMHMGDKFTMVL 60

Query: 531 APTLNLDGTPDTGYFTQGNRKSLADKYEYVMHGKLYKITE-----DKRTGKADILASFGG 695
           APTLNLDGTPDTGY+TQ  RK+LADKY+YVMHGKLYKI+E     DK   K +I ASFGG
Sbjct: 61  APTLNLDGTPDTGYYTQAGRKTLADKYDYVMHGKLYKISEDNSSKDKGPTKVEIYASFGG 120

Query: 696 LLMWMKGDRTVAAKFELDQRLFILIRKV 779
           LLM +KGD + AA  ELDQ+LF+LIRKV
Sbjct: 121 LLMLLKGDPSSAANLELDQKLFLLIRKV 148


>ref|NP_001051880.1| Os03g0845700 [Oryza sativa Japonica Group]
           gi|29244685|gb|AAO73277.1| putative RNA polymerase
           [Oryza sativa Japonica Group] gi|41469638|gb|AAS07361.1|
           putative RNA polymerase [Oryza sativa Japonica Group]
           gi|108712076|gb|ABF99871.1| RNA polymerase Rpb8 family
           protein, expressed [Oryza sativa Japonica Group]
           gi|108712077|gb|ABF99872.1| RNA polymerase Rpb8 family
           protein, expressed [Oryza sativa Japonica Group]
           gi|113550351|dbj|BAF13794.1| Os03g0845700 [Oryza sativa
           Japonica Group] gi|125588624|gb|EAZ29288.1| hypothetical
           protein OsJ_13351 [Oryza sativa Japonica Group]
           gi|215692970|dbj|BAG88390.1| unnamed protein product
           [Oryza sativa Japonica Group]
          Length = 148

 Score =  205 bits (522), Expect = 2e-50
 Identities = 99/148 (66%), Positives = 122/148 (82%), Gaps = 5/148 (3%)
 Frame = +3

Query: 351 MSDTLFEDIFTITDVDPGGKKFDRVNRIVAKSERFDMYMQLDINTDIYPMRKGEKFLMEL 530
           M++ LFEDIFT+T +DP GKKFDRV+RI A+S++FDMYMQLD+ TD+YPM  G++F M L
Sbjct: 1   MAEFLFEDIFTVTRLDPDGKKFDRVSRIEARSDQFDMYMQLDVATDVYPMHPGDRFTMVL 60

Query: 531 APTLNLDGTPDTGYFTQGNRKSLADKYEYVMHGKLYKITEDKRTG-----KADILASFGG 695
            PTLNLDGTPD+ +FTQ  RK+LADKYEYVMHGKLYKI+EDK T      K ++ ASFGG
Sbjct: 61  VPTLNLDGTPDSAFFTQAGRKTLADKYEYVMHGKLYKISEDKDTSDQNAKKVEMYASFGG 120

Query: 696 LLMWMKGDRTVAAKFELDQRLFILIRKV 779
           LL+ +KGD + AA FELDQRLF+L+RKV
Sbjct: 121 LLVMLKGDPSSAANFELDQRLFLLMRKV 148


>gb|EEC76521.1| hypothetical protein OsI_14307 [Oryza sativa Indica Group]
          Length = 215

 Score =  205 bits (522), Expect = 2e-50
 Identities = 99/148 (66%), Positives = 122/148 (82%), Gaps = 5/148 (3%)
 Frame = +3

Query: 351 MSDTLFEDIFTITDVDPGGKKFDRVNRIVAKSERFDMYMQLDINTDIYPMRKGEKFLMEL 530
           M++ LFEDIFT+T +DP GKKFDRV+RI A+S++FDMYMQLD+ TD+YPM  G++F M L
Sbjct: 68  MAEFLFEDIFTVTRLDPDGKKFDRVSRIEARSDQFDMYMQLDVATDVYPMHPGDRFTMVL 127

Query: 531 APTLNLDGTPDTGYFTQGNRKSLADKYEYVMHGKLYKITEDKRTG-----KADILASFGG 695
            PTLNLDGTPD+ +FTQ  RK+LADKYEYVMHGKLYKI+EDK T      K ++ ASFGG
Sbjct: 128 VPTLNLDGTPDSAFFTQAGRKTLADKYEYVMHGKLYKISEDKDTSDQNAKKVEMYASFGG 187

Query: 696 LLMWMKGDRTVAAKFELDQRLFILIRKV 779
           LL+ +KGD + AA FELDQRLF+L+RKV
Sbjct: 188 LLVMLKGDPSSAANFELDQRLFLLMRKV 215


>gb|ACG27451.1| DNA-directed RNA polymerases I, II, and III 17.1 kDa polypeptide
           [Zea mays]
          Length = 146

 Score =  204 bits (519), Expect = 5e-50
 Identities = 99/146 (67%), Positives = 118/146 (80%), Gaps = 3/146 (2%)
 Frame = +3

Query: 351 MSDTLFEDIFTITDVDPGGKKFDRVNRIVAKSERFDMYMQLDINTDIYPMRKGEKFLMEL 530
           MSD LFED F +T +DP GKKFDRV+R+ A+SE+ DMYMQLD+ TD+YPM  GEKF M +
Sbjct: 1   MSDHLFEDTFVVTRLDPDGKKFDRVSRVEARSEQLDMYMQLDVATDVYPMHAGEKFNMVI 60

Query: 531 APTLNLDGTPDTGYFTQGNRKSLADKYEYVMHGKLYKITED---KRTGKADILASFGGLL 701
           APTLNLDGTPDTGY+TQ  RK+LAD YEYVM GKLYKI+ED    +  K ++ ASFGGLL
Sbjct: 61  APTLNLDGTPDTGYYTQAGRKTLADNYEYVMQGKLYKISEDTSSSQNAKVEMYASFGGLL 120

Query: 702 MWMKGDRTVAAKFELDQRLFILIRKV 779
           M ++GD + AA FELDQRLF+LIRKV
Sbjct: 121 MLLRGDPSTAASFELDQRLFLLIRKV 146


>ref|XP_004152137.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           rpabc3-like [Cucumis sativus]
           gi|449484745|ref|XP_004156968.1| PREDICTED: DNA-directed
           RNA polymerases I, II, and III subunit rpabc3-like
           [Cucumis sativus]
          Length = 144

 Score =  202 bits (515), Expect = 1e-49
 Identities = 100/144 (69%), Positives = 121/144 (84%), Gaps = 1/144 (0%)
 Frame = +3

Query: 351 MSDTLFEDIFTITDVDPGGKKFDRVNRIVAKSERFDMYMQLDINTDIYPMRKGEKFLMEL 530
           M + LF+DIF I  ++P GKKFD+V RI AKSE+FDM+M LDIN++IYP+++GEKF M L
Sbjct: 1   MVELLFDDIFKIERLNPDGKKFDKVTRIEAKSEKFDMFMHLDINSEIYPLKEGEKFSMAL 60

Query: 531 APTLNLDGTPDTGYFTQGNRKSLADKYEYVMHGKLYKITEDK-RTGKADILASFGGLLMW 707
           APTLNLDGTPDTGYF QGNRKSLAD+YEYVM GKL++I+E     GKA+I ASFGGLLM 
Sbjct: 61  APTLNLDGTPDTGYFLQGNRKSLADRYEYVMQGKLFRISESSGHGGKAEIDASFGGLLMM 120

Query: 708 MKGDRTVAAKFELDQRLFILIRKV 779
           +KGD +  +KFELDQRLF+LIRKV
Sbjct: 121 LKGDPSHCSKFELDQRLFLLIRKV 144


>ref|NP_001147399.1| LOC100281008 [Zea mays] gi|194699730|gb|ACF83949.1| unknown [Zea
           mays] gi|195607894|gb|ACG25777.1| DNA-directed RNA
           polymerases I, II, and III 17.1 kDa polypeptide [Zea
           mays] gi|195608506|gb|ACG26083.1| DNA-directed RNA
           polymerases I, II, and III 17.1 kDa polypeptide [Zea
           mays] gi|195611040|gb|ACG27350.1| DNA-directed RNA
           polymerases I, II, and III 17.1 kDa polypeptide [Zea
           mays] gi|195649823|gb|ACG44379.1| DNA-directed RNA
           polymerases I, II, and III 17.1 kDa polypeptide [Zea
           mays] gi|195653495|gb|ACG46215.1| DNA-directed RNA
           polymerases I, II, and III 17.1 kDa polypeptide [Zea
           mays] gi|238014148|gb|ACR38109.1| unknown [Zea mays]
           gi|413932441|gb|AFW66992.1| DNA-directed RNA polymerase
           I, II, and III polypeptide isoform 1 [Zea mays]
           gi|413932442|gb|AFW66993.1| DNA-directed RNA polymerase
           I, II, and III polypeptide isoform 2 [Zea mays]
           gi|413932443|gb|AFW66994.1| DNA-directed RNA polymerase
           I, II, and III polypeptide isoform 3 [Zea mays]
           gi|413932444|gb|AFW66995.1| DNA-directed RNA polymerase
           I, II, and III polypeptide isoform 4 [Zea mays]
          Length = 146

 Score =  202 bits (515), Expect = 1e-49
 Identities = 98/146 (67%), Positives = 118/146 (80%), Gaps = 3/146 (2%)
 Frame = +3

Query: 351 MSDTLFEDIFTITDVDPGGKKFDRVNRIVAKSERFDMYMQLDINTDIYPMRKGEKFLMEL 530
           MS+ LFED F +T +DP GKKFDRV+R+ A+SE+ DMYMQLD+ TD+YPM  GEKF M +
Sbjct: 1   MSEHLFEDTFVVTRLDPDGKKFDRVSRVEARSEQLDMYMQLDVATDVYPMHAGEKFNMVI 60

Query: 531 APTLNLDGTPDTGYFTQGNRKSLADKYEYVMHGKLYKITED---KRTGKADILASFGGLL 701
           APTLNLDGTPDTGY+TQ  RK+LAD YEYVM GKLYKI+ED    +  K ++ ASFGGLL
Sbjct: 61  APTLNLDGTPDTGYYTQAGRKTLADNYEYVMQGKLYKISEDTSSSQNAKVEMYASFGGLL 120

Query: 702 MWMKGDRTVAAKFELDQRLFILIRKV 779
           M ++GD + AA FELDQRLF+LIRKV
Sbjct: 121 MLLRGDPSTAASFELDQRLFLLIRKV 146


>ref|XP_003580476.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           rpabc3-like [Brachypodium distachyon]
          Length = 146

 Score =  202 bits (513), Expect = 3e-49
 Identities = 99/146 (67%), Positives = 117/146 (80%), Gaps = 3/146 (2%)
 Frame = +3

Query: 351 MSDTLFEDIFTITDVDPGGKKFDRVNRIVAKSERFDMYMQLDINTDIYPMRKGEKFLMEL 530
           M++ LFEDIF +  +DP GKKFDRVNRI A+SE+F MYMQLD+ T +YPM  G+KF M L
Sbjct: 1   MAEHLFEDIFVVNRIDPDGKKFDRVNRIEARSEQFHMYMQLDVATYVYPMHAGDKFTMVL 60

Query: 531 APTLNLDGTPDTGYFTQGNRKSLADKYEYVMHGKLYKITEDKRTG---KADILASFGGLL 701
           APTLNLDGTPDTGY+TQ  RK+LADKY+YVMHGKLYKI+ED   G   K +  ASFGGLL
Sbjct: 61  APTLNLDGTPDTGYYTQAGRKTLADKYDYVMHGKLYKISEDSSGGQAAKVETYASFGGLL 120

Query: 702 MWMKGDRTVAAKFELDQRLFILIRKV 779
           M +KGD + AA  ELDQRLF+L+RKV
Sbjct: 121 MLLKGDPSSAANLELDQRLFLLMRKV 146


>ref|XP_003563485.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           rpabc3-like [Brachypodium distachyon]
          Length = 144

 Score =  201 bits (510), Expect = 6e-49
 Identities = 100/146 (68%), Positives = 119/146 (81%), Gaps = 3/146 (2%)
 Frame = +3

Query: 351 MSDTLFEDIFTITDVDPGGKKFDRVNRIVAKSERFDMYMQLDINTDIYPMRKGEKFLMEL 530
           M++ LFEDIF ++ +DP GKKFDRVNRI A+SE+  MYMQLD+ TD+YPM  G+KF M L
Sbjct: 1   MAEHLFEDIFVVSRIDPDGKKFDRVNRIEARSEQ--MYMQLDVATDVYPMHAGDKFTMVL 58

Query: 531 APTLNLDGTPDTGYFTQGNRKSLADKYEYVMHGKLYKITEDKRTG---KADILASFGGLL 701
           APTLNLDGTPDTGY+TQ  RK+LADKY+YVMHGKLYKI+ED   G   K +I ASFGGLL
Sbjct: 59  APTLNLDGTPDTGYYTQAGRKTLADKYDYVMHGKLYKISEDSSGGQAAKVEIYASFGGLL 118

Query: 702 MWMKGDRTVAAKFELDQRLFILIRKV 779
           M +KGD + AA  ELDQRLF+L+RKV
Sbjct: 119 MLLKGDPSSAANLELDQRLFLLMRKV 144


>ref|XP_002463525.1| hypothetical protein SORBIDRAFT_01g001420 [Sorghum bicolor]
           gi|241917379|gb|EER90523.1| hypothetical protein
           SORBIDRAFT_01g001420 [Sorghum bicolor]
          Length = 145

 Score =  200 bits (508), Expect = 1e-48
 Identities = 97/145 (66%), Positives = 117/145 (80%), Gaps = 2/145 (1%)
 Frame = +3

Query: 351 MSDTLFEDIFTITDVDPGGKKFDRVNRIVAKSERFDMYMQLDINTDIYPMRKGEKFLMEL 530
           MS+ LFED F +  +DP GKKFDRV+R+ A+SE+  MYMQLD+ TD+YPM+  EKF M L
Sbjct: 1   MSEHLFEDTFVVNRLDPDGKKFDRVSRVEARSEQLAMYMQLDVATDVYPMQPNEKFNMVL 60

Query: 531 APTLNLDGTPDTGYFTQGNRKSLADKYEYVMHGKLYKITED--KRTGKADILASFGGLLM 704
           APTLNLDGTPDTGY+TQ  RK+LAD YEYVMHGKLYKI+ED   +  K +I ASFGGLLM
Sbjct: 61  APTLNLDGTPDTGYYTQAGRKTLADNYEYVMHGKLYKISEDTSSQNAKVEIYASFGGLLM 120

Query: 705 WMKGDRTVAAKFELDQRLFILIRKV 779
            ++GD + AA FELDQRLF+L+RKV
Sbjct: 121 LLRGDPSTAASFELDQRLFLLMRKV 145


>ref|XP_002466106.1| hypothetical protein SORBIDRAFT_01g001330 [Sorghum bicolor]
           gi|241919960|gb|EER93104.1| hypothetical protein
           SORBIDRAFT_01g001330 [Sorghum bicolor]
          Length = 145

 Score =  199 bits (505), Expect = 2e-48
 Identities = 96/145 (66%), Positives = 118/145 (81%), Gaps = 2/145 (1%)
 Frame = +3

Query: 351 MSDTLFEDIFTITDVDPGGKKFDRVNRIVAKSERFDMYMQLDINTDIYPMRKGEKFLMEL 530
           MS+ LFED F ++ +DP GKKFD+V+R+ A+SE+  MYMQLD+ TD+YP+R GEKF M L
Sbjct: 1   MSEHLFEDTFIVSRLDPDGKKFDKVSRVEARSEQLGMYMQLDVATDVYPLRAGEKFNMVL 60

Query: 531 APTLNLDGTPDTGYFTQGNRKSLADKYEYVMHGKLYKITED--KRTGKADILASFGGLLM 704
           APTLNLDGTPDTGY+TQ  RK+LAD YEYVM GKLYKI+ED   +  K +I ASFGGLLM
Sbjct: 61  APTLNLDGTPDTGYYTQAGRKTLADNYEYVMQGKLYKISEDTSSQNAKVEIYASFGGLLM 120

Query: 705 WMKGDRTVAAKFELDQRLFILIRKV 779
            ++GD + AA FELDQRLF+L+RKV
Sbjct: 121 LLRGDPSTAASFELDQRLFLLMRKV 145


>gb|ABK26380.1| unknown [Picea sitchensis]
          Length = 145

 Score =  197 bits (502), Expect = 5e-48
 Identities = 97/145 (66%), Positives = 117/145 (80%), Gaps = 2/145 (1%)
 Frame = +3

Query: 351 MSDTLFEDIFTITDVDPGGKKFDRVNRIVAKSERFDMYMQLDINTDIYPMRKGEKFLMEL 530
           M + LFEDIFT+T +DP GKKFD+V+RI A+SE+FDMYM LD+N D+YP+  GEKF + L
Sbjct: 1   MVELLFEDIFTVTRIDPDGKKFDKVSRIEARSEQFDMYMLLDVNIDVYPVSVGEKFAVAL 60

Query: 531 APTLNLDGTPDTGYFTQGNRKSLADKYEYVMHGKLYKITEDKRTG--KADILASFGGLLM 704
           APTLNLDGTPD GYF QG RKSLADKYEYVM+GKLY ++E+      K +I ASFGGLLM
Sbjct: 61  APTLNLDGTPDNGYFIQGGRKSLADKYEYVMYGKLYNLSEEGSGANVKVEINASFGGLLM 120

Query: 705 WMKGDRTVAAKFELDQRLFILIRKV 779
            +KGD + A  FELDQRLF+L+RKV
Sbjct: 121 LLKGDPSNAGNFELDQRLFLLMRKV 145


>gb|EMJ13247.1| hypothetical protein PRUPE_ppa011397mg [Prunus persica]
          Length = 212

 Score =  194 bits (494), Expect = 4e-47
 Identities = 95/145 (65%), Positives = 118/145 (81%), Gaps = 1/145 (0%)
 Frame = +3

Query: 348 RMSDTLFEDIFTITDVDPGGKKFDRVNRIVAKSERFDMYMQLDINTDIYPMRKGEKFLME 527
           RM D LFEDIF I  ++P GKKFD+V RI AKSE  +M+M LD+N+++YPMR+GEKF M 
Sbjct: 68  RMVDRLFEDIFQILRLNPDGKKFDKVTRIEAKSETCEMFMHLDVNSEVYPMREGEKFSMA 127

Query: 528 LAPTLNLDGTPDTGYFTQGNRKSLADKYEYVMHGKLYKITE-DKRTGKADILASFGGLLM 704
           L  T+NLDGTPDTGYFTQGNRK+LAD+YEYVM GKL+KI+E  KR  KA++ ASFGGLLM
Sbjct: 128 LTSTINLDGTPDTGYFTQGNRKTLADEYEYVMQGKLFKISEGSKRDPKAEVNASFGGLLM 187

Query: 705 WMKGDRTVAAKFELDQRLFILIRKV 779
            +KG+ +    FELDQR+F+LIRK+
Sbjct: 188 MLKGEASQFKNFELDQRMFLLIRKL 212


>gb|EXB86762.1| DNA-directed RNA polymerases I, II, and III subunit RPABC3 [Morus
           notabilis]
          Length = 187

 Score =  194 bits (492), Expect = 7e-47
 Identities = 96/144 (66%), Positives = 115/144 (79%), Gaps = 1/144 (0%)
 Frame = +3

Query: 351 MSDTLFEDIFTITDVDPGGKKFDRVNRIVAKSERFDMYMQLDINTDIYPMRKGEKFLMEL 530
           M++ LFEDIF I  ++P GKKFD+V RI AKSE+FDM+M LD+ TD+YPM +GEKF M L
Sbjct: 1   MAEFLFEDIFKIDRLNPDGKKFDKVTRIEAKSEKFDMFMHLDVGTDVYPMNEGEKFSMAL 60

Query: 531 APTLNLDGTPDTGYFTQGNRKSLADKYEYVMHGKLYKITEDK-RTGKADILASFGGLLMW 707
           + TLN DGTPDTGY+T GNRK+LAD YEYVM GKLY+I E     GKA+I ASFGGLLM 
Sbjct: 61  SSTLNEDGTPDTGYYTPGNRKTLADNYEYVMQGKLYRIAEGSGHHGKAEIDASFGGLLMM 120

Query: 708 MKGDRTVAAKFELDQRLFILIRKV 779
           +KGD +   K+ELDQRLF+LIRKV
Sbjct: 121 LKGDPSYFKKYELDQRLFLLIRKV 144


>ref|XP_002274171.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           rpabc3 isoform 1 [Vitis vinifera]
           gi|359478220|ref|XP_003632088.1| PREDICTED: DNA-directed
           RNA polymerases I, II, and III subunit rpabc3 isoform 2
           [Vitis vinifera] gi|296084252|emb|CBI24640.3| unnamed
           protein product [Vitis vinifera]
          Length = 145

 Score =  192 bits (487), Expect = 3e-46
 Identities = 95/145 (65%), Positives = 113/145 (77%), Gaps = 2/145 (1%)
 Frame = +3

Query: 351 MSDTLFEDIFTITDVDPGGKKFDRVNRIVAKSERFDMYMQLDINTDIYPMRKGEKFLMEL 530
           M +TLF DIF +  +DP GKKFD+V+RI A+SE+ DMYMQLD+NT+IYPM  GEKF M L
Sbjct: 1   MENTLFGDIFKVIQIDPDGKKFDKVSRIEAQSEQLDMYMQLDVNTEIYPMHAGEKFAMSL 60

Query: 531 APTLNLDGTPDTGYFTQGNRKSLADKYEYVMHGKLYKITEDKR--TGKADILASFGGLLM 704
           A TL+LDGTPDTGY+TQ  RKSLADK+EYVMHGKLYKI+E+      K  I  SFGGLLM
Sbjct: 61  ASTLDLDGTPDTGYYTQAGRKSLADKFEYVMHGKLYKISEEGSGPNVKGVIYVSFGGLLM 120

Query: 705 WMKGDRTVAAKFELDQRLFILIRKV 779
            + GD    AK +LDQR+F+LIRKV
Sbjct: 121 MLSGDPANTAKLDLDQRVFLLIRKV 145


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