BLASTX nr result
ID: Catharanthus22_contig00008963
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus22_contig00008963
(933 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006469117.1| PREDICTED: putative ribonuclease H protein A... 69 2e-21
emb|CAB78008.1| putative protein [Arabidopsis thaliana] gi|73210... 58 4e-17
ref|XP_006493638.1| PREDICTED: putative ribonuclease H protein A... 70 9e-17
emb|CCA66009.1| hypothetical protein [Beta vulgaris subsp. vulga... 69 1e-16
ref|XP_004306074.1| PREDICTED: putative ribonuclease H protein A... 68 5e-16
dbj|BAE79385.1| unnamed protein product [Ipomoea batatas] 53 7e-15
dbj|BAE79382.1| unnamed protein product [Ipomoea batatas] 53 7e-15
gb|AAF23831.1|AC007234_3 F1E22.12 [Arabidopsis thaliana] 50 7e-15
sp|P0C2F6.1|RNHX1_ARATH RecName: Full=Putative ribonuclease H pr... 50 7e-15
ref|XP_006493637.1| PREDICTED: putative ribonuclease H protein A... 68 2e-14
ref|XP_006480844.1| PREDICTED: putative ribonuclease H protein A... 67 7e-14
dbj|BAE79384.1| unnamed protein product [Ipomoea batatas] 49 1e-13
gb|ABD28505.2| RNA-directed DNA polymerase (Reverse transcriptas... 52 1e-13
gb|AAC63844.1| putative non-LTR retroelement reverse transcripta... 44 1e-12
ref|XP_006584399.1| PREDICTED: putative ribonuclease H protein A... 69 5e-12
gb|ABW81175.1| non-LTR retrotransposon transposase [Arabidopsis ... 50 6e-11
ref|XP_006469101.1| PREDICTED: putative ribonuclease H protein A... 57 1e-10
emb|CCA65997.1| hypothetical protein [Beta vulgaris subsp. vulga... 52 1e-10
gb|AAD37021.1| putative non-LTR retrolelement reverse transcript... 45 2e-10
emb|CAN78577.1| hypothetical protein VITISV_020585 [Vitis vinifera] 48 3e-10
>ref|XP_006469117.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus
sinensis]
Length = 491
Score = 69.3 bits (168), Expect(3) = 2e-21
Identities = 44/164 (26%), Positives = 71/164 (43%), Gaps = 1/164 (0%)
Frame = +1
Query: 187 GLGAKRVSYIWKGIYSSSKVLETKFFWQLGNEKTVSFWTDH*HGEEPFLRTVNLN-LPKD 363
GL + S++WK I W + N + V FW D + L + L +P +
Sbjct: 138 GLPTRSGSHLWKSIGKVWSDTLKGLQWNIVNGRRVRFWLDCWVTKHKPLSSYALAPIPVE 197
Query: 364 S*RLKVTDYWDTQNLDWKWHLLEPWLPQEKLFLLNGIKLLPDQNRENRLWWGNSNKGEFG 543
S + D+ D N +W+W E LP + + ++ + +++ +W NS +G+F
Sbjct: 198 SLMNLIVDFVDA-NGNWRWDSFEHLLPNCIILRIAAVQPPMEGKGDDKFFWANSQRGDFS 256
Query: 544 SSQAYIELCNLEGREGQPLWTKLWKLKGPKRGPLFLWFLAHRRL 675
AY+ + E W WK KGP R F+W H RL
Sbjct: 257 VKSAYMAITKNEIGIEHSRWNIAWKWKGPPRVQTFIWLALHDRL 300
Score = 40.8 bits (94), Expect(3) = 2e-21
Identities = 17/37 (45%), Positives = 22/37 (59%)
Frame = +2
Query: 725 WILPNCEVGEETLAHALRDCVEARKVWEFLVPSLRWR 835
W +C V ET H LRDC A+++W L+PS WR
Sbjct: 315 WTCDHCGVASETTLHVLRDCFMAKRLWNQLLPS-EWR 350
Score = 40.0 bits (92), Expect(3) = 2e-21
Identities = 19/52 (36%), Positives = 23/52 (44%)
Frame = +2
Query: 11 IAWPAICQPXXXXXXXXXXXKEANMVALCKLAWRCCNEKNSLWTQVLKGKYG 166
I W +CQP N + KLAW +E SLW +VL KYG
Sbjct: 78 IGWDKVCQPKLCGGLGLKNLGMMNKALMMKLAWGLVSEPTSLWCRVLYTKYG 129
>emb|CAB78008.1| putative protein [Arabidopsis thaliana] gi|7321072|emb|CAB82119.1|
putative protein [Arabidopsis thaliana]
Length = 947
Score = 58.2 bits (139), Expect(3) = 4e-17
Identities = 36/136 (26%), Positives = 59/136 (43%), Gaps = 4/136 (2%)
Frame = +1
Query: 265 WQLGNEKTVSFWTDH*HGEEPFLRTVNLNLPKDS*RLKVTDYWDTQNLDWKWHLLEPWLP 444
W +GN + + FW+D+ E + + +P L+V D W L WK +EP++
Sbjct: 580 WVVGNGRDILFWSDNWLSHEALINRAVIEIPNSEKELRVKDLW-ANGLGWKLDKIEPYIS 638
Query: 445 QEKLFLLNGIKLLPDQNRENRLWWGNSNKGEFGSSQAYIELCNLEGREGQP----LWTKL 612
L + + +RL WG S G F AY L E + +P + +L
Sbjct: 639 YHTRLELAAVVVDSVTGARDRLSWGYSADGVFTVKSAYRLL--TEDHDPRPNMAAFFDRL 696
Query: 613 WKLKGPKRGPLFLWFL 660
W++ +R FLW +
Sbjct: 697 WRVVALERVKTFLWHI 712
Score = 45.1 bits (105), Expect(3) = 4e-17
Identities = 18/54 (33%), Positives = 27/54 (50%)
Frame = +2
Query: 2 LHSIAWPAICQPXXXXXXXXXXXKEANMVALCKLAWRCCNEKNSLWTQVLKGKY 163
LH +AW +C P K N + K+ WR N++ SLW ++L+ KY
Sbjct: 513 LHLVAWDRVCLPKSEGGLGIRTSKCMNKALVSKVGWRLINDRYSLWARILRSKY 566
Score = 32.0 bits (71), Expect(3) = 4e-17
Identities = 16/53 (30%), Positives = 22/53 (41%)
Frame = +2
Query: 659 WHTGDYSNGSKDFPPIEAD*R*WILPNCEVGEETLAHALRDCVEARKVWEFLV 817
WH GD S + C+ G+ET+ H L+DC +W LV
Sbjct: 710 WHIGDTS----------------VCQVCKGGDETILHVLKDCPSIAGIWRRLV 746
>ref|XP_006493638.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus
sinensis]
Length = 360
Score = 69.7 bits (169), Expect(3) = 9e-17
Identities = 44/162 (27%), Positives = 67/162 (41%)
Frame = +1
Query: 190 LGAKRVSYIWKGIYSSSKVLETKFFWQLGNEKTVSFWTDH*HGEEPFLRTVNLNLPKDS* 369
L K SY+WK + + W +GN V FW D+ EE L T L +
Sbjct: 148 LPTKCGSYMWKAVGGIWHEVLKGIKWDIGNGNRVRFWWDNWVTEEYPLYTFALQPIRLQQ 207
Query: 370 RLKVTDYWDTQNLDWKWHLLEPWLPQEKLFLLNGIKLLPDQNRENRLWWGNSNKGEFGSS 549
+ + T W W L E P L + K + ++ ++W S +F ++
Sbjct: 208 LEECVARFITVEGTWNWRLFENLFPHHLLLKIAATKPPSVNDEDDYMYWAYSKSEDFTTN 267
Query: 550 QAYIELCNLEGREGQPLWTKLWKLKGPKRGPLFLWFLAHRRL 675
AY L +E + W LW+ +GP+R FLW + RL
Sbjct: 268 SAYRALSKMEVHNEESFWRILWQWRGPQRIKTFLWVVGQNRL 309
Score = 34.3 bits (77), Expect(3) = 9e-17
Identities = 17/52 (32%), Positives = 20/52 (38%)
Frame = +2
Query: 11 IAWPAICQPXXXXXXXXXXXKEANMVALCKLAWRCCNEKNSLWTQVLKGKYG 166
+ W ICQ N L K+ W NSLW +VL KYG
Sbjct: 87 VKWDTICQLKPSGGLGLKQLNLMNDALLMKIGWVLIASPNSLWVKVLLSKYG 138
Score = 30.0 bits (66), Expect(3) = 9e-17
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +2
Query: 740 CEVGEETLAHALRDCVEARKVWEFLVP 820
C E H LRDC A+ VW L+P
Sbjct: 329 CGCVVENTLHVLRDCPSAKHVWSSLIP 355
>emb|CCA66009.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1378
Score = 68.9 bits (167), Expect(3) = 1e-16
Identities = 44/173 (25%), Positives = 72/173 (41%), Gaps = 2/173 (1%)
Frame = +1
Query: 166 HNCEIWCGLGAKRVSYIWKGIYSSSKVLETKFFWQLGNEKTVSFWTDH*HGEEPFLRTVN 345
+ C+I S W+GI SS V+ +GN FW EP + +
Sbjct: 898 NRCDIDMFKEKSNASSTWRGILSSIDVVRKGINSAVGNGAKTLFWHHRWATSEPLISLAS 957
Query: 346 LNLPKDS*RLKVTDYWDTQNLDWKWHLLEPWLPQEKLFLLNGIKLLPDQNRENRLWWGNS 525
P + V + WD + WK + +LP+ L L+ +L+ D+ + ++W S
Sbjct: 958 PIPPIELQDATVKEMWDLVS-GWKVDVFANYLPEATLKLIAAHELIDDEEAIDDIYWNGS 1016
Query: 526 NKGEF--GSSQAYIELCNLEGREGQPLWTKLWKLKGPKRGPLFLWFLAHRRLL 678
G F GS+ L + P W+ +WK+ P+R F+W RL+
Sbjct: 1017 PSGGFTIGSAMNITRNAELANMDAHPKWSAVWKIPTPQRVRFFIWLAIQDRLM 1069
Score = 41.6 bits (96), Expect(3) = 1e-16
Identities = 18/54 (33%), Positives = 28/54 (51%)
Frame = +2
Query: 2 LHSIAWPAICQPXXXXXXXXXXXKEANMVALCKLAWRCCNEKNSLWTQVLKGKY 163
+H +AW I + ++AN L KL WR E +SLW+++L+ KY
Sbjct: 842 VHLVAWENISKSKKEGGLGIRSMRQANSAFLVKLGWRLLAEPSSLWSRILRAKY 895
Score = 22.7 bits (47), Expect(3) = 1e-16
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = +2
Query: 740 CEVGEETLAHALRDCVEARKVWEFL 814
C EE H LR C AR +W L
Sbjct: 1088 CGEVEENTDHILRRCPVARILWRKL 1112
>ref|XP_004306074.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
vesca subsp. vesca]
Length = 407
Score = 67.8 bits (164), Expect(3) = 5e-16
Identities = 44/159 (27%), Positives = 73/159 (45%), Gaps = 2/159 (1%)
Frame = +1
Query: 208 SYIWKGIYSSSKVLETKFFWQLGNEKTVSFWTDH*HGEEPFLRTVNLNLPKD--S*RLKV 381
S W+GI +K+L + W+LG+ K++ FW D+ P +N LP + V
Sbjct: 170 SSTWRGIIFGAKLLRSNLKWRLGDGKSIKFWHDYWFPAGPL---INFALPSAFINHAATV 226
Query: 382 TDYWDTQNLDWKWHLLEPWLPQEKLFLLNGIKLLPDQNRENRLWWGNSNKGEFGSSQAYI 561
D+W W H L +P E + + + + + + L WG + G+F AY
Sbjct: 227 CDFWIEDG--WDVHKLLDVVPFEIVNKIVNVPIDFGVSGSDTLIWGATANGKFFVKSAYN 284
Query: 562 ELCNLEGREGQPLWTKLWKLKGPKRGPLFLWFLAHRRLL 678
L ++ P W +W++K P + FLW H++LL
Sbjct: 285 SLFDMSA-PLNPQWNYIWRMKIPPKLKTFLWTFLHKKLL 322
Score = 36.6 bits (83), Expect(3) = 5e-16
Identities = 14/54 (25%), Positives = 22/54 (40%)
Frame = +2
Query: 2 LHSIAWPAICQPXXXXXXXXXXXKEANMVALCKLAWRCCNEKNSLWTQVLKGKY 163
+H + W +CQP ++ N L K++WR LW + KY
Sbjct: 99 VHLVNWDVVCQPKQLGDIGIKKTEDMNQAMLAKISWRMFQCDKGLWASMFAEKY 152
Score = 26.9 bits (58), Expect(3) = 5e-16
Identities = 9/30 (30%), Positives = 15/30 (50%)
Frame = +2
Query: 728 ILPNCEVGEETLAHALRDCVEARKVWEFLV 817
+ P C+ +E+ H RDC + +W V
Sbjct: 337 LCPICQSADESFLHLFRDCPRSVLIWNAFV 366
>dbj|BAE79385.1| unnamed protein product [Ipomoea batatas]
Length = 1366
Score = 53.1 bits (126), Expect(3) = 7e-15
Identities = 38/158 (24%), Positives = 68/158 (43%), Gaps = 1/158 (0%)
Frame = +1
Query: 208 SYIWKGIYSSSKVLETKFFWQLGNEKTVSFWTDH*HGEEPFLRTVN-LNLPKDS*RLKVT 384
S+ W+ I VL W +GN + ++FW D G+ P + +N P + +KV
Sbjct: 909 SWGWRSIMKGKDVLAGAIKWNVGNGRKINFWNDWWVGDGPLASNTDCINQPHMT-DIKVE 967
Query: 385 DYWDTQNLDWKWHLLEPWLPQEKLFLLNGIKLLPDQNRENRLWWGNSNKGEFGSSQAYIE 564
D +Q W L LP + ++ + + +E+ L W +S G S AY
Sbjct: 968 DLITSQR-RWDTGALHNILPTNMIDMVRATPIAINSEQEDFLSWPHSTTGMVTVSSAYSL 1026
Query: 565 LCNLEGREGQPLWTKLWKLKGPKRGPLFLWFLAHRRLL 678
+ +G + W +W+ ++ LF+W + L+
Sbjct: 1027 IAGHDGDDRSHDW--IWRATCTEKIKLFMWKIVKNGLM 1062
Score = 42.7 bits (99), Expect(3) = 7e-15
Identities = 18/54 (33%), Positives = 28/54 (51%)
Frame = +2
Query: 2 LHSIAWPAICQPXXXXXXXXXXXKEANMVALCKLAWRCCNEKNSLWTQVLKGKY 163
LHS+ W IC+P ++ N L K+AW+ + + LW +VL+ KY
Sbjct: 840 LHSVNWAEICKPRNEGGLGLRMARDFNRAFLTKMAWQIFSNIDKLWVKVLREKY 893
Score = 31.6 bits (70), Expect(3) = 7e-15
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +2
Query: 734 PNCEVGEETLAHALRDCVEARKVWEFLVPSLRWRSS 841
P C +ETL H R C+ A W+ VP L +++S
Sbjct: 1079 PVCGEEDETLDHLFRRCLLAEACWDSAVPPLTFQTS 1114
>dbj|BAE79382.1| unnamed protein product [Ipomoea batatas]
Length = 1366
Score = 53.1 bits (126), Expect(3) = 7e-15
Identities = 38/158 (24%), Positives = 68/158 (43%), Gaps = 1/158 (0%)
Frame = +1
Query: 208 SYIWKGIYSSSKVLETKFFWQLGNEKTVSFWTDH*HGEEPFLRTVN-LNLPKDS*RLKVT 384
S+ W+ I VL W +GN + ++FW D G+ P + +N P + +KV
Sbjct: 909 SWGWRSIMKGKDVLAGAIKWNVGNGRKINFWNDWWVGDGPLASNTDCINQPHMT-DIKVE 967
Query: 385 DYWDTQNLDWKWHLLEPWLPQEKLFLLNGIKLLPDQNRENRLWWGNSNKGEFGSSQAYIE 564
D +Q W L LP + ++ + + +E+ L W +S G S AY
Sbjct: 968 DLITSQR-RWDTGALHNILPTNMIDMVRATPIAINSEQEDFLSWPHSTTGMVTVSSAYSL 1026
Query: 565 LCNLEGREGQPLWTKLWKLKGPKRGPLFLWFLAHRRLL 678
+ +G + W +W+ ++ LF+W + L+
Sbjct: 1027 IAGHDGDDRSHDW--IWRATCTEKIKLFMWKIVKNGLM 1062
Score = 42.7 bits (99), Expect(3) = 7e-15
Identities = 18/54 (33%), Positives = 28/54 (51%)
Frame = +2
Query: 2 LHSIAWPAICQPXXXXXXXXXXXKEANMVALCKLAWRCCNEKNSLWTQVLKGKY 163
LHS+ W IC+P ++ N L K+AW+ + + LW +VL+ KY
Sbjct: 840 LHSVNWAEICKPRNEGGLGLRMARDFNRAFLTKMAWQIFSNIDKLWVKVLREKY 893
Score = 31.6 bits (70), Expect(3) = 7e-15
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +2
Query: 734 PNCEVGEETLAHALRDCVEARKVWEFLVPSLRWRSS 841
P C +ETL H R C+ A W+ VP L +++S
Sbjct: 1079 PVCGEEDETLDHLFRRCLLAEACWDSAVPPLTFQTS 1114
>gb|AAF23831.1|AC007234_3 F1E22.12 [Arabidopsis thaliana]
Length = 1055
Score = 50.1 bits (118), Expect(3) = 7e-15
Identities = 33/140 (23%), Positives = 57/140 (40%), Gaps = 2/140 (1%)
Frame = +1
Query: 265 WQLGNEKTVSFWTDH*HGEEPFLRTVNLNLPKDS*RLKVTDYWDTQNLDWKWHLLEPWLP 444
W G+ + + FWTD +P L N P D + D W W + ++P+
Sbjct: 284 WIPGDGQQIRFWTDRWVSGKPLLELDNGERPTDCDTVVAKDLW-IPGRGWDFAKIDPYTT 342
Query: 445 QEKLFLLNGIKLLPDQNRENRLWWGNSNKGEFGSSQAY--IELCNLEGREGQPLWTKLWK 618
L + L +RL W S G+F AY + + + + LWK
Sbjct: 343 NNTRLELRAVVLDLVTGARDRLSWKFSQDGQFSVRSAYEMLTVDEVPRPNMASFFNCLWK 402
Query: 619 LKGPKRGPLFLWFLAHRRLL 678
++ P+R FLW + ++ ++
Sbjct: 403 VRVPERVKTFLWLVGNQAVM 422
Score = 47.4 bits (111), Expect(3) = 7e-15
Identities = 20/53 (37%), Positives = 25/53 (47%)
Frame = +2
Query: 5 HSIAWPAICQPXXXXXXXXXXXKEANMVALCKLAWRCCNEKNSLWTQVLKGKY 163
H + W +C P K N + K+ WR EKNSLWT VL+ KY
Sbjct: 194 HLVKWSKVCSPKKEGGLGVRAAKSMNRALISKVGWRLLQEKNSLWTLVLQKKY 246
Score = 30.0 bits (66), Expect(3) = 7e-15
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 740 CEVGEETLAHALRDCVEARKVWEFLVPSLR 829
C+ G E++ H LRDC +W +VP R
Sbjct: 441 CKGGVESMLHVLRDCPAQLGIWVRVVPQRR 470
>sp|P0C2F6.1|RNHX1_ARATH RecName: Full=Putative ribonuclease H protein At1g65750
Length = 620
Score = 50.1 bits (118), Expect(3) = 7e-15
Identities = 33/140 (23%), Positives = 57/140 (40%), Gaps = 2/140 (1%)
Frame = +1
Query: 265 WQLGNEKTVSFWTDH*HGEEPFLRTVNLNLPKDS*RLKVTDYWDTQNLDWKWHLLEPWLP 444
W G+ + + FWTD +P L N P D + D W W + ++P+
Sbjct: 175 WIPGDGQQIRFWTDRWVSGKPLLELDNGERPTDCDTVVAKDLW-IPGRGWDFAKIDPYTT 233
Query: 445 QEKLFLLNGIKLLPDQNRENRLWWGNSNKGEFGSSQAY--IELCNLEGREGQPLWTKLWK 618
L + L +RL W S G+F AY + + + + LWK
Sbjct: 234 NNTRLELRAVVLDLVTGARDRLSWKFSQDGQFSVRSAYEMLTVDEVPRPNMASFFNCLWK 293
Query: 619 LKGPKRGPLFLWFLAHRRLL 678
++ P+R FLW + ++ ++
Sbjct: 294 VRVPERVKTFLWLVGNQAVM 313
Score = 47.4 bits (111), Expect(3) = 7e-15
Identities = 20/53 (37%), Positives = 25/53 (47%)
Frame = +2
Query: 5 HSIAWPAICQPXXXXXXXXXXXKEANMVALCKLAWRCCNEKNSLWTQVLKGKY 163
H + W +C P K N + K+ WR EKNSLWT VL+ KY
Sbjct: 85 HLVKWSKVCSPKKEGGLGVRAAKSMNRALISKVGWRLLQEKNSLWTLVLQKKY 137
Score = 30.0 bits (66), Expect(3) = 7e-15
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 740 CEVGEETLAHALRDCVEARKVWEFLVPSLR 829
C+ G E++ H LRDC +W +VP R
Sbjct: 332 CKGGVESMLHVLRDCPAQLGIWVRVVPQRR 361
>ref|XP_006493637.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus
sinensis]
Length = 246
Score = 68.2 bits (165), Expect(3) = 2e-14
Identities = 43/162 (26%), Positives = 66/162 (40%)
Frame = +1
Query: 190 LGAKRVSYIWKGIYSSSKVLETKFFWQLGNEKTVSFWTDH*HGEEPFLRTVNLNLPKDS* 369
L K SY+WK + + W +GN V FW D+ EE L T L +
Sbjct: 34 LPTKYGSYMWKAVGGIWHEVLKGIKWDIGNGNRVRFWWDNWVTEEYPLYTFALQPIRLQQ 93
Query: 370 RLKVTDYWDTQNLDWKWHLLEPWLPQEKLFLLNGIKLLPDQNRENRLWWGNSNKGEFGSS 549
+ + T W W L E P L + K + ++ ++W S +F ++
Sbjct: 94 LEECVARFITVEGTWNWRLFENLFPHHLLLKIAATKPPSVNDEDDYMYWAYSKSEDFTTN 153
Query: 550 QAYIELCNLEGREGQPLWTKLWKLKGPKRGPLFLWFLAHRRL 675
AY L +E + W LW+ +GP+ FLW + RL
Sbjct: 154 SAYRALSKMEVHNEESFWRILWQWRGPQHIKTFLWVVGQNRL 195
Score = 30.0 bits (66), Expect(3) = 2e-14
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +2
Query: 740 CEVGEETLAHALRDCVEARKVWEFLVP 820
C E H LRDC A+ VW L+P
Sbjct: 215 CGCVVENTLHVLRDCPSAKHVWSSLIP 241
Score = 28.1 bits (61), Expect(3) = 2e-14
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +2
Query: 98 KLAWRCCNEKNSLWTQVLKGKYG 166
K+ W NSLW +VL KYG
Sbjct: 2 KIGWGLIASPNSLWVKVLLSKYG 24
>ref|XP_006480844.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus
sinensis]
Length = 768
Score = 66.6 bits (161), Expect(2) = 7e-14
Identities = 42/157 (26%), Positives = 67/157 (42%), Gaps = 1/157 (0%)
Frame = +1
Query: 208 SYIWKGIYSSSKVLETKFFWQLGNEKTVSFWTDH*HGEEPFLRTVNLN-LPKDS*RLKVT 384
S++WK + + W +GN V FW D L + ++ +P D L V
Sbjct: 336 SHLWKSVGRVWDYAKRGIRWIVGNGWKVKFWWDCWATTPLTLADLAIHPIPPDLSDLYVA 395
Query: 385 DYWDTQNLDWKWHLLEPWLPQEKLFLLNGIKLLPDQNRENRLWWGNSNKGEFGSSQAYIE 564
D+ T W W LP + + ++ I N ++++W S +G+F AY
Sbjct: 396 DFVSTDG-SWNWPKFSHILPHQAVMIIASIHPPSACNGVDQVYWAASPQGDFTVKSAYDL 454
Query: 565 LCNLEGREGQPLWTKLWKLKGPKRGPLFLWFLAHRRL 675
L G+E W W KGP+ +F+W + H RL
Sbjct: 455 LDQSRGQERDSYWKIAWSWKGPQSIKIFIWLVLHNRL 491
Score = 37.7 bits (86), Expect(2) = 7e-14
Identities = 19/52 (36%), Positives = 22/52 (42%)
Frame = +2
Query: 11 IAWPAICQPXXXXXXXXXXXKEANMVALCKLAWRCCNEKNSLWTQVLKGKYG 166
++W ICQP N L K+AW E N L QVL KYG
Sbjct: 269 VSWHNICQPKMAGGLGFKRLDIMNEALLLKVAWHLITEPNKLCVQVLSTKYG 320
>dbj|BAE79384.1| unnamed protein product [Ipomoea batatas]
Length = 1898
Score = 48.5 bits (114), Expect(3) = 1e-13
Identities = 37/158 (23%), Positives = 66/158 (41%), Gaps = 1/158 (0%)
Frame = +1
Query: 208 SYIWKGIYSSSKVLETKFFWQLGNEKTVSFWTDH*HGEEPFLRTVN-LNLPKDS*RLKVT 384
S+ W+ I VL W +GN + ++FW D G+ P + +N P + +KV
Sbjct: 1441 SWGWRSIMKGKDVLAGAIKWNVGNGRKINFWNDWWVGDGPLASNTDCINQPHMT-DIKVE 1499
Query: 385 DYWDTQNLDWKWHLLEPWLPQEKLFLLNGIKLLPDQNRENRLWWGNSNKGEFGSSQAYIE 564
D +Q W L LP + ++ + + +E+ W +S G S AY
Sbjct: 1500 DLTTSQR-RWDTGALHNILPINMIDMVRATPIAINSEQEDFPSWPHSTTGMVTVSSAYSL 1558
Query: 565 LCNLEGREGQPLWTKLWKLKGPKRGPLFLWFLAHRRLL 678
+ +G W +W+ ++ LF+W + L+
Sbjct: 1559 IAGHDGDGRSHDW--IWRATCTEKIKLFMWKIVKNGLM 1594
Score = 42.7 bits (99), Expect(3) = 1e-13
Identities = 18/54 (33%), Positives = 28/54 (51%)
Frame = +2
Query: 2 LHSIAWPAICQPXXXXXXXXXXXKEANMVALCKLAWRCCNEKNSLWTQVLKGKY 163
LHS+ W IC+P ++ N L K+AW+ + + LW +VL+ KY
Sbjct: 1372 LHSVNWAEICKPRNEGGLGLRMARDFNRAFLTKMAWQIFSNIDKLWVKVLREKY 1425
Score = 31.6 bits (70), Expect(3) = 1e-13
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +2
Query: 734 PNCEVGEETLAHALRDCVEARKVWEFLVPSLRWRSS 841
P C +ETL H R C+ A W+ VP L +++S
Sbjct: 1611 PVCGEEDETLDHLFRRCLLAEACWDSAVPPLTFQTS 1646
>gb|ABD28505.2| RNA-directed DNA polymerase (Reverse transcriptase);
Polynucleotidyl transferase, Ribonuclease H fold
[Medicago truncatula]
Length = 729
Score = 52.0 bits (123), Expect(3) = 1e-13
Identities = 44/163 (26%), Positives = 70/163 (42%), Gaps = 6/163 (3%)
Frame = +1
Query: 208 SYIWKGIYSSSKVLETKFFWQLGNEKTVSFWTDH*HGEEPFLRTVNLNLPKDS*RLKVTD 387
S +WK I + WQ+G+ ++ +FW D L + + D+ + V D
Sbjct: 336 SPLWKAIVGIWDDFKRHVIWQIGDGRSTNFWLDKWISNNTSLFSSSTQSYVDT-TISVRD 394
Query: 388 YWDTQNLDWKWHLLEPWLPQEKLFLLNGIKLLP---DQNRENRLWWGNSNKGEFGSSQAY 558
+T + W + L L + ++N I LP D + + + WG +N +F AY
Sbjct: 395 AINTSGV-WDLNFLMDNLHVD---IVNQILALPTPSDFDGPDTIGWGGTNTLKFTVQSAY 450
Query: 559 IELCNLEGREGQPL---WTKLWKLKGPKRGPLFLWFLAHRRLL 678
NL+ + W LW KGP R F+W AH R+L
Sbjct: 451 ----NLQQENPFAVGGDWKTLWNWKGPHRIQTFIWLAAHGRIL 489
Score = 35.8 bits (81), Expect(3) = 1e-13
Identities = 15/54 (27%), Positives = 21/54 (38%)
Frame = +2
Query: 5 HSIAWPAICQPXXXXXXXXXXXKEANMVALCKLAWRCCNEKNSLWTQVLKGKYG 166
H ++W C P N L K+ W + + LW +VL KYG
Sbjct: 267 HLVSWDVCCLPKMNGGLGFKRPHHMNEAFLMKMLWNLIKQPDKLWCRVLYSKYG 320
Score = 35.0 bits (79), Expect(3) = 1e-13
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +2
Query: 734 PNCEVGEETLAHALRDCVEARKVWEFLVP 820
P C +ET+ H LRDCV + +VW L+P
Sbjct: 506 PCCAREDETVIHVLRDCVHSTQVWLRLIP 534
>gb|AAC63844.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1231
Score = 44.3 bits (103), Expect(3) = 1e-12
Identities = 39/166 (23%), Positives = 69/166 (41%), Gaps = 7/166 (4%)
Frame = +1
Query: 202 RVSYIWKGIYSSSKVLETKFF-WQLGNEKTVSFWTDH*HGEEPFLRTVNLNLPKDS*RLK 378
R S W+ + + + K W G+ T+ FW D +EP + +P+ R+K
Sbjct: 768 RWSSTWRSVAVGLREVVVKGVGWVPGDGCTIRFWLDRWLLQEPLVELGTDMIPEGE-RIK 826
Query: 379 V-TDYWDTQNLDWKWHLLEPWLPQEKLFLLNGIKLLPDQNRENRLWWGNSNKGEFGSSQA 555
V DYW W +L +LP+ L + + + + W + G F A
Sbjct: 827 VAADYW-LPGSGWNLEILGLYLPETVKRRLLSVVVQVFLGNGDEISWKGTQDGAFTVRSA 885
Query: 556 YIELCNLEGREGQ-----PLWTKLWKLKGPKRGPLFLWFLAHRRLL 678
Y L+G G + ++WKL P+R +F+W ++ ++
Sbjct: 886 Y---SLLQGDVGDRPNMGSFFNRIWKLITPERVRVFIWLVSQNVIM 928
Score = 42.7 bits (99), Expect(3) = 1e-12
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = +2
Query: 5 HSIAWPAICQPXXXXXXXXXXXKEANMVALCKLAWRCCNEKNSLWTQVLKGKY 163
H ++W IC+P ++ N + K+ WR +K SLW +V++ KY
Sbjct: 700 HLLSWRKICKPKAEGGIGLRSARDMNKALVAKVGWRLLQDKESLWARVVRKKY 752
Score = 32.7 bits (73), Expect(3) = 1e-12
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +2
Query: 740 CEVGEETLAHALRDCVEARKVWEFLVPSLR 829
C EET+ H LRDC +W L+P R
Sbjct: 947 CNGAEETILHVLRDCPAMEPIWRRLLPLRR 976
>ref|XP_006584399.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Glycine
max]
Length = 470
Score = 69.3 bits (168), Expect(2) = 5e-12
Identities = 43/158 (27%), Positives = 71/158 (44%), Gaps = 1/158 (0%)
Frame = +1
Query: 208 SYIWKGIYSSSKVLETKFFWQLGNEKTVSFWTDH*HGEEPF-LRTVNLNLPKDS*RLKVT 384
S +WK I + L +W +G +VS W D + L V +P KV
Sbjct: 7 SSLWKAIVALWPYLVDGEYWAVGKSDSVSVWYDRWISADIIKLSNVMQVIPDHVANYKVN 66
Query: 385 DYWDTQNLDWKWHLLEPWLPQEKLFLLNGIKLLPDQNRENRLWWGNSNKGEFGSSQAYIE 564
D Q+ W + LL +PQ+ + + I D ++R W + GE+ + Y +
Sbjct: 67 DMVK-QDGQWDFELLSLLIPQDIIKCIKAIIPPRDNADDDRRLWTGNKLGEYFVASGYNQ 125
Query: 565 LCNLEGREGQPLWTKLWKLKGPKRGPLFLWFLAHRRLL 678
+ + +W K+WK+K P+R +F+W + H RLL
Sbjct: 126 VNGFQNLSQSHIWNKIWKIKAPERIKVFIWQVTHERLL 163
Score = 28.9 bits (63), Expect(2) = 5e-12
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 737 NCEVGEETLAHALRDCVEARKVWEFLV 817
+C + EE + H LRDC A VW L+
Sbjct: 180 HCVILEENILHVLRDCPLANLVWLHLL 206
>gb|ABW81175.1| non-LTR retrotransposon transposase [Arabidopsis cebennensis]
Length = 799
Score = 50.4 bits (119), Expect(3) = 6e-11
Identities = 33/140 (23%), Positives = 57/140 (40%), Gaps = 2/140 (1%)
Frame = +1
Query: 265 WQLGNEKTVSFWTDH*HGEEPFLRTVNLNLPKDS*RLKVTDYWDTQNLDWKWHLLEPWLP 444
W +G+ +T FW D P + P +V D W W + P++
Sbjct: 354 WVVGDGQTTRFWADKWLMNTPLREDIIGPAPVGLEEARVCDLWQ-HGRGWLLENIAPYVA 412
Query: 445 QEKLFLLNGIKLLPDQNRENRLWWGNSNKGEFGSSQAYIELC--NLEGREGQPLWTKLWK 618
+ L + + +RL WG S G+F AY L N + ++ ++WK
Sbjct: 413 PDIRLRLKAVVVDNITGVRDRLSWGESLDGKFTVKSAYSSLMKDNTPRSDLSRMYDRVWK 472
Query: 619 LKGPKRGPLFLWFLAHRRLL 678
+ P+R +FLW H+ ++
Sbjct: 473 VIAPERVKIFLWLGVHQVIM 492
Score = 32.0 bits (71), Expect(3) = 6e-11
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +2
Query: 740 CEVGEETLAHALRDCVEARKVWEFLVP 820
C+ G+ET+ H LRDC +W ++P
Sbjct: 511 CKGGDETIIHILRDCPAMYGIWTRIIP 537
Score = 31.6 bits (70), Expect(3) = 6e-11
Identities = 14/49 (28%), Positives = 21/49 (42%)
Frame = +2
Query: 5 HSIAWPAICQPXXXXXXXXXXXKEANMVALCKLAWRCCNEKNSLWTQVL 151
H +AW I + N L K+ WR +K+SLW +V+
Sbjct: 292 HLLAWNKIYCTKQAGGLGIRSSRAMNTALLAKIGWRLLQDKSSLWARVI 340
>ref|XP_006469101.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus
sinensis]
Length = 684
Score = 57.4 bits (137), Expect(3) = 1e-10
Identities = 36/160 (22%), Positives = 65/160 (40%), Gaps = 1/160 (0%)
Frame = +1
Query: 199 KRVSYIWKGIYSSSKVLETKFFWQLGNEKTVSFWTDH*HGEE-PFLRTVNLNLPKDS*RL 375
K+ + IW+ I ++ W + + FW D ++ P + +P++ +
Sbjct: 247 KQGTRIWRAIRNTWSATMMGARWAVCDGTRTRFWLDCWATKQGPLINLAIHPVPQELVKA 306
Query: 376 KVTDYWDTQNLDWKWHLLEPWLPQEKLFLLNGIKLLPDQNRENRLWWGNSNKGEFGSSQA 555
V+++ + DW W E P L + + ++L+W +G F A
Sbjct: 307 TVSEFINVHG-DWNWSAFEHLFPNSVLLQIASVMPPNHLLGVDKLFWRYEPRGNFTVRSA 365
Query: 556 YIELCNLEGREGQPLWTKLWKLKGPKRGPLFLWFLAHRRL 675
Y LC L+ + W W KGP+ +FLW H +L
Sbjct: 366 YEALCQLDSNDTGTAWKLAWTWKGPQAVRIFLWQALHAKL 405
Score = 28.9 bits (63), Expect(3) = 1e-10
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +2
Query: 80 NMVALCKLAWRCCNEKNSLWTQVLKGKYG 166
++ L KL+W+ + + LW +V+ KYG
Sbjct: 206 HLALLMKLSWQVVSNSDKLWVKVVCSKYG 234
Score = 26.6 bits (57), Expect(3) = 1e-10
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +2
Query: 740 CEVGEETLAHALRDCVEARKVWEFLVPS 823
C E + H LRDC +VW LVP+
Sbjct: 425 CGAPIEDVIHVLRDCQCIMRVWLRLVPA 452
>emb|CCA65997.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1363
Score = 52.4 bits (124), Expect(3) = 1e-10
Identities = 42/177 (23%), Positives = 64/177 (36%), Gaps = 6/177 (3%)
Frame = +1
Query: 163 WHNCEIWCGLGAKRVSYIWKGIYSSSKVLETKFFWQLGNEKTVSFWTDH*HGEEPFLRTV 342
W +G S IW+ I ++LE ++GN ++ S W G P + +
Sbjct: 893 WERGSFLSAVGKNHHSPIWRDIVKGRELLEKGLVRRIGNGRSTSLWYHWWVGGGPLVDVM 952
Query: 343 NLNLPKDS*RLKVTDYWDTQNL----DWKWHLLEPWLPQEKLFLLNGIKLLPDQNRENRL 510
N+P + +W N+ W + LP + L + I L E+
Sbjct: 953 GSNIP------EFMSHWQVSNIIKRGRWDTKKISHLLPPDILKQIKEIPLASMSEVEDDF 1006
Query: 511 WWGNSNKGEFGSSQAYIELCNLEGRE--GQPLWTKLWKLKGPKRGPLFLWFLAHRRL 675
W G F AY L N E G+ W LW+ P + L +W H L
Sbjct: 1007 TWNFEKNGTFSVKSAYY-LINRREEETGGKGSWRGLWRKNIPFKYKLLIWNGIHNIL 1062
Score = 36.2 bits (82), Expect(3) = 1e-10
Identities = 14/54 (25%), Positives = 23/54 (42%)
Frame = +2
Query: 2 LHSIAWPAICQPXXXXXXXXXXXKEANMVALCKLAWRCCNEKNSLWTQVLKGKY 163
L ++W IC P N+ + KL W ++ LW ++LK +Y
Sbjct: 839 LARMSWDRICSPTGKGGLGFRRLHNWNLAFMAKLGWMIIKDETKLWVRILKARY 892
Score = 23.9 bits (50), Expect(3) = 1e-10
Identities = 9/22 (40%), Positives = 11/22 (50%)
Frame = +2
Query: 740 CEVGEETLAHALRDCVEARKVW 805
C+ E + H RDC A VW
Sbjct: 1082 CDHPIEDMIHLFRDCCVASSVW 1103
>gb|AAD37021.1| putative non-LTR retrolelement reverse transcriptase [Arabidopsis
thaliana]
Length = 732
Score = 45.4 bits (106), Expect(3) = 2e-10
Identities = 30/140 (21%), Positives = 55/140 (39%), Gaps = 2/140 (1%)
Frame = +1
Query: 265 WQLGNEKTVSFWTDH*HGEEPFLRTVNLNLPKDS*RLKVTDYWDTQNLDWKWHLLEPWLP 444
W +G+ + + FW D P + P ++ D + W + P++
Sbjct: 452 WVIGDGREILFWMDKWLTNIPLAELLVQEPPAGWKGMRARDL-RRNGIGWDMATIAPYIS 510
Query: 445 QEKLFLLNGIKLLPDQNRENRLWWGNSNKGEFGSSQAYIELCNLEG--REGQPLWTKLWK 618
L L +R+ WG S G F S Y L E ++ + + ++W
Sbjct: 511 SYNRLQLQSFVLDDITGARDRISWGESQDGRFKVSTTYSFLTRDEAPRQDMKRFFDRVWS 570
Query: 619 LKGPKRGPLFLWFLAHRRLL 678
+ P+R LFLW +A + ++
Sbjct: 571 VTAPERVRLFLWLVAQQAIM 590
Score = 39.3 bits (90), Expect(3) = 2e-10
Identities = 14/53 (26%), Positives = 26/53 (49%)
Frame = +2
Query: 5 HSIAWPAICQPXXXXXXXXXXXKEANMVALCKLAWRCCNEKNSLWTQVLKGKY 163
H I+W +C+P ++ N L K+ WR + +SLW ++++ Y
Sbjct: 362 HLISWKRVCKPRSEGGLGIRKAQDMNKALLSKVGWRLIQDYHSLWARIMRCNY 414
Score = 27.3 bits (59), Expect(3) = 2e-10
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +2
Query: 740 CEVGEETLAHALRDCVEARKVWEFLVPSL 826
C+ +E++ H LRDC +W L+ L
Sbjct: 609 CKGAKESIIHVLRDCPAMEGIWLRLISDL 637
>emb|CAN78577.1| hypothetical protein VITISV_020585 [Vitis vinifera]
Length = 1848
Score = 47.8 bits (112), Expect(2) = 3e-10
Identities = 51/199 (25%), Positives = 85/199 (42%), Gaps = 15/199 (7%)
Frame = +1
Query: 214 IWKGIYSSSKVLETKFFWQLGNEKTVSFWTDH*HGEEP----FLRTVNLNLPKDS*RLKV 381
+WKGI ++ + + +GN + VSFW D G P F L++ K++ V
Sbjct: 1547 LWKGIRMDWDLVGARISFSVGNGRRVSFWRDRWCGXAPLCDSFPSIYALSIEKEA---WV 1603
Query: 382 TDYWD--TQNLDWKWH-----LLEPW-LPQEKLFL--LNGIKLLPDQNRENRLWWGNSNK 531
D WD Q W+ L W + + +LFL L+G +++ D+ ++++ W +
Sbjct: 1604 ADVWDPLVQGGRGGWNPCFSRALNDWEMEEAELFLGCLHGKRVIGDE--DDKVVWTETKS 1661
Query: 532 GEFGSSQAYIELCNLEGREGQPLWTKLWKLKGPKRGPLFLWFLAHRRLL*WI*GLSSNRG 711
G F + Y+ L + P + +WK+ + F W A W G
Sbjct: 1662 GIFSAKSLYLAL-EADCPSSFPS-SCIWKVWVQPKISFFAWEAA------W--------G 1705
Query: 712 RLTLMDLAQLRGWG-GNSC 765
+ +DL Q RGW N C
Sbjct: 1706 KALTLDLVQRRGWSLANRC 1724
Score = 44.3 bits (103), Expect(2) = 3e-10
Identities = 18/54 (33%), Positives = 24/54 (44%)
Frame = +2
Query: 5 HSIAWPAICQPXXXXXXXXXXXKEANMVALCKLAWRCCNEKNSLWTQVLKGKYG 166
H + W +C N L K WR NE+ +LW QV++GKYG
Sbjct: 1475 HLVRWKVVCLSKKKGGLGIKCLSNLNKALLSKWNWRYANEREALWNQVIRGKYG 1528