BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Catharanthus22_contig00008961
         (854 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004306074.1| PREDICTED: putative ribonuclease H protein A...    48   6e-10
ref|XP_004289445.1| PREDICTED: putative ribonuclease H protein A...    65   8e-09
gb|AAD37021.1| putative non-LTR retrolelement reverse transcript...    53   4e-08
gb|AAC63844.1| putative non-LTR retroelement reverse transcripta...    51   8e-08
emb|CAB10337.1| reverse transcriptase like protein [Arabidopsis ...    49   1e-07
ref|XP_006480844.1| PREDICTED: putative ribonuclease H protein A...    43   1e-07
sp|P0C2F6.1|RNHX1_ARATH RecName: Full=Putative ribonuclease H pr...    56   3e-07
gb|AEL30350.1| RNA-directed DNA polymerase [Arachis hypogaea]          42   4e-07
gb|EMJ07680.1| hypothetical protein PRUPE_ppa018770mg [Prunus pe...    41   1e-06
ref|XP_002282016.2| PREDICTED: uncharacterized protein LOC100262...    51   2e-06
gb|AEL30359.1| RNA-directed DNA polymerase [Arachis hypogaea]          40   3e-06
emb|CCA66009.1| hypothetical protein [Beta vulgaris subsp. vulga...    45   5e-06
gb|ABW81175.1| non-LTR retrotransposon transposase [Arabidopsis ...    47   5e-06
emb|CAN72279.1| hypothetical protein VITISV_043410 [Vitis vinifera]    52   7e-06

>ref|XP_004306074.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
           vesca subsp. vesca]
          Length = 407

 Score = 47.8 bits (112), Expect(2) = 6e-10
 Identities = 29/88 (32%), Positives = 45/88 (51%)
 Frame = +3

Query: 300 LFLKQSTVASLPINLMQTHILPNAIIKTLGKKNY*QIFFWGSNNSKRKIDLIKRQTVKSP 479
           L L QS  +++P   MQT   P ++ + L K N  + F WG    K+K+ L+    V  P
Sbjct: 53  LTLIQSVSSAIPNYAMQTAKFPVSLCENLDKLN--RNFLWGDTEIKKKVHLVNWDVVCQP 110

Query: 480 KTIGGLRMKKLYQ*NIALFSQASRRFLQ 563
           K +G + +KK    N A+ ++ S R  Q
Sbjct: 111 KQLGDIGIKKTEDMNQAMLAKISWRMFQ 138



 Score = 43.1 bits (100), Expect(2) = 6e-10
 Identities = 20/46 (43%), Positives = 29/46 (63%)
 Frame = +2

Query: 167 INKY*GFPLNHTKPYKQAFLGLIDTPHSKLASWRSKHPWQAGRITL 304
           + KY G PL H++  K  + G+ D   S+L+SW+SK    AGR+TL
Sbjct: 10  LGKYLGMPLIHSRVNKHTYDGIFDQVQSRLSSWKSKVLSMAGRLTL 55


>ref|XP_004289445.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
           vesca subsp. vesca]
          Length = 719

 Score = 65.5 bits (158), Expect(2) = 8e-09
 Identities = 38/89 (42%), Positives = 53/89 (59%)
 Frame = +3

Query: 300 LFLKQSTVASLPINLMQTHILPNAIIKTLGKKNY*QIFFWGSNNSKRKIDLIKRQTVKSP 479
           L L QS  AS+PI  MQT  LP ++ +++ K N    F WG +N K+KI L+  ++V  P
Sbjct: 341 LTLVQSVTASIPIYAMQTAKLPLSLCESIDKANI--NFLWGDSNEKKKIHLVNWESVCKP 398

Query: 480 KTIGGLRMKKLYQ*NIALFSQASRRFLQN 566
           K  GGL +KK    N A+ ++AS R  QN
Sbjct: 399 KHRGGLGLKKTADMNQAMLAKASWRIFQN 427



 Score = 21.6 bits (44), Expect(2) = 8e-09
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +2

Query: 248 SKLASWRSKHPWQAGRITL 304
           S L+ W SK    AGR+TL
Sbjct: 325 SGLSGWSSKTLSMAGRLTL 343


>gb|AAD37021.1| putative non-LTR retrolelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 732

 Score = 53.1 bits (126), Expect(2) = 4e-08
 Identities = 32/94 (34%), Positives = 55/94 (58%)
 Frame = +3

Query: 306 LKQSTVASLPINLMQTHILPNAIIKTLGKKNY*QIFFWGSNNSKRKIDLIKRQTVKSPKT 485
           L ++ ++S+P++ M T  LP + +  L K +  + F WGS+ ++RK  LI  + V  P++
Sbjct: 317 LTKAVLSSIPVHTMSTIALPKSTLDGLDKVS--RSFLWGSSVTQRKQHLISWKRVCKPRS 374

Query: 486 IGGLRMKKLYQ*NIALFSQASRRFLQNHTSAYWA 587
            GGL ++K    N AL S+   R +Q++ S  WA
Sbjct: 375 EGGLGIRKAQDMNKALLSKVGWRLIQDYHS-LWA 407



 Score = 31.6 bits (70), Expect(2) = 4e-08
 Identities = 15/51 (29%), Positives = 28/51 (54%)
 Frame = +2

Query: 155 SNQIINKY*GFPLNHTKPYKQAFLGLIDTPHSKLASWRSKHPWQAGRITLS 307
           S + + KY G P+   +  K  F  +++   ++LA W+ +    AGR+TL+
Sbjct: 268 STRELGKYLGMPVLQRRINKDTFGDILEKLTTRLAGWKGRFLSLAGRVTLT 318


>gb|AAC63844.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1231

 Score = 50.8 bits (120), Expect(2) = 8e-08
 Identities = 29/94 (30%), Positives = 52/94 (55%)
 Frame = +3

Query: 306 LKQSTVASLPINLMQTHILPNAIIKTLGKKNY*QIFFWGSNNSKRKIDLIKRQTVKSPKT 485
           L ++ ++S+P+++M   +LP + + TL +  Y + F WGS   K+K  L+  + +  PK 
Sbjct: 655 LTKAVLSSIPVHVMSAILLPVSTLDTLDR--YSRTFLWGSTMEKKKQHLLSWRKICKPKA 712

Query: 486 IGGLRMKKLYQ*NIALFSQASRRFLQNHTSAYWA 587
            GG+ ++     N AL ++   R LQ+  S  WA
Sbjct: 713 EGGIGLRSARDMNKALVAKVGWRLLQDKES-LWA 745



 Score = 32.7 bits (73), Expect(2) = 8e-08
 Identities = 15/47 (31%), Positives = 27/47 (57%)
 Frame = +2

Query: 167 INKY*GFPLNHTKPYKQAFLGLIDTPHSKLASWRSKHPWQAGRITLS 307
           + KY G P+   +  K+ F  +++   ++LA W+ +    AGRITL+
Sbjct: 610 LGKYLGMPILQKRMNKETFGEVLERVSARLAGWKGRSLSLAGRITLT 656


>emb|CAB10337.1| reverse transcriptase like protein [Arabidopsis thaliana]
           gi|7268307|emb|CAB78601.1| reverse transcriptase like
           protein [Arabidopsis thaliana]
          Length = 929

 Score = 49.3 bits (116), Expect(2) = 1e-07
 Identities = 31/94 (32%), Positives = 51/94 (54%)
 Frame = +3

Query: 306 LKQSTVASLPINLMQTHILPNAIIKTLGKKNY*QIFFWGSNNSKRKIDLIKRQTVKSPKT 485
           L ++ + S+PI+ M + +LP ++++ L K +  + F WGS   KRK  L+  + V  PK 
Sbjct: 590 LTKAVLMSIPIHTMSSILLPASLLEQLDKVS--RNFLWGSTVEKRKQHLLSWKKVCRPKA 647

Query: 486 IGGLRMKKLYQ*NIALFSQASRRFLQNHTSAYWA 587
            GGL ++     N AL ++   R L +  S  WA
Sbjct: 648 AGGLGLRASKDMNRALLAKVGWRLLNDKVS-LWA 680



 Score = 33.5 bits (75), Expect(2) = 1e-07
 Identities = 17/51 (33%), Positives = 29/51 (56%)
 Frame = +2

Query: 155 SNQIINKY*GFPLNHTKPYKQAFLGLIDTPHSKLASWRSKHPWQAGRITLS 307
           S + + KY G P+   +  K  F  +++   S+L+ W+S+    AGRITL+
Sbjct: 541 STRELGKYLGMPVLQKRINKDTFGEVLERVSSRLSGWKSRSLSLAGRITLT 591


>ref|XP_006480844.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus
           sinensis]
          Length = 768

 Score = 43.1 bits (100), Expect(2) = 1e-07
 Identities = 28/76 (36%), Positives = 39/76 (51%)
 Frame = +3

Query: 306 LKQSTVASLPINLMQTHILPNAIIKTLGKKNY*QIFFWGSNNSKRKIDLIKRQTVKSPKT 485
           L QS + ++PI  MQT  LP +I   L +    + F W  N+  RK+ L+    +  PK 
Sbjct: 222 LTQSVLQAVPIYAMQTTNLPGSIKTKLDQ--ICRRFLWSGNDELRKMSLVSWHNICQPKM 279

Query: 486 IGGLRMKKLYQ*NIAL 533
            GGL  K+L   N AL
Sbjct: 280 AGGLGFKRLDIMNEAL 295



 Score = 39.7 bits (91), Expect(2) = 1e-07
 Identities = 18/47 (38%), Positives = 27/47 (57%)
 Frame = +2

Query: 167 INKY*GFPLNHTKPYKQAFLGLIDTPHSKLASWRSKHPWQAGRITLS 307
           + KY G PL H++  +Q + G++D    KL  W +     AGRITL+
Sbjct: 177 LGKYLGMPLLHSRVSQQTYQGILDKTDQKLLGWAASQLSLAGRITLT 223


>sp|P0C2F6.1|RNHX1_ARATH RecName: Full=Putative ribonuclease H protein At1g65750
          Length = 620

 Score = 56.2 bits (134), Expect(2) = 3e-07
 Identities = 33/94 (35%), Positives = 52/94 (55%)
 Frame = +3

Query: 300 LFLKQSTVASLPINLMQTHILPNAIIKTLGKKNY*QIFFWGSNNSKRKIDLIKRQTVKSP 479
           L L ++ ++S+P++ M T +LP +I+  L + +  + F WGS   K+K  L+K   V SP
Sbjct: 38  LTLTKAVLSSMPVHSMSTILLPQSILNRLDQLS--RTFLWGSTAEKKKQHLVKWSKVCSP 95

Query: 480 KTIGGLRMKKLYQ*NIALFSQASRRFLQNHTSAY 581
           K  GGL ++     N AL S+   R LQ   S +
Sbjct: 96  KKEGGLGVRAAKSMNRALISKVGWRLLQEKNSLW 129



 Score = 25.4 bits (54), Expect(2) = 3e-07
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +2

Query: 188 PLNHTKPYKQAFLGLIDTPHSKLASWRSKHPWQAGRITLS 307
           P+   +  K  F  +++   S+++ WR K    AGR+TL+
Sbjct: 2   PVLQKRINKDTFGEILERVSSRMSGWREKTLSFAGRLTLT 41


>gb|AEL30350.1| RNA-directed DNA polymerase [Arachis hypogaea]
          Length = 673

 Score = 42.0 bits (97), Expect(2) = 4e-07
 Identities = 28/88 (31%), Positives = 42/88 (47%)
 Frame = +3

Query: 300 LFLKQSTVASLPINLMQTHILPNAIIKTLGKKNY*QIFFWGSNNSKRKIDLIKRQTVKSP 479
           L L  S  A++P   MQ  I P  II  L  ++  + F W      R ++L+  + + +P
Sbjct: 123 LCLVNSVAAAIPTYQMQVSIFPKGIISKL--ESMMRNFLWKGQVDGRGLNLVSWKVLVTP 180

Query: 480 KTIGGLRMKKLYQ*NIALFSQASRRFLQ 563
           K  GGL ++  Y  NIAL  +    F Q
Sbjct: 181 KKYGGLGIRDPYCVNIALLGKLVWTFFQ 208



 Score = 39.3 bits (90), Expect(2) = 4e-07
 Identities = 19/48 (39%), Positives = 30/48 (62%)
 Frame = +2

Query: 161 QIINKY*GFPLNHTKPYKQAFLGLIDTPHSKLASWRSKHPWQAGRITL 304
           Q + KY G  L+H++  + AF G++D   S+LASW+     +AGR+ L
Sbjct: 78  QDLGKYLGVTLSHSRVTRSAFNGVLDKIRSRLASWKGSLLNRAGRLCL 125


>gb|EMJ07680.1| hypothetical protein PRUPE_ppa018770mg [Prunus persica]
          Length = 790

 Score = 41.2 bits (95), Expect(2) = 1e-06
 Identities = 23/51 (45%), Positives = 31/51 (60%)
 Frame = +2

Query: 152 LSNQIINKY*GFPLNHTKPYKQAFLGLIDTPHSKLASWRSKHPWQAGRITL 304
           L+N + N Y G PL H+   K  +  L+D  H++LASW+SK    AGR TL
Sbjct: 615 LTNDLGN-YLGMPLLHSTIGKHTYSSLVDKVHNRLASWKSKLLSLAGRATL 664



 Score = 38.5 bits (88), Expect(2) = 1e-06
 Identities = 22/49 (44%), Positives = 29/49 (59%)
 Frame = +3

Query: 306 LKQSTVASLPINLMQTHILPNAIIKTLGKKNY*QIFFWGSNNSKRKIDL 452
           L Q+  AS+PI  MQT  LP ++   L + N  + FFWGS+  K KI L
Sbjct: 664 LIQAVTASIPIYAMQTTKLPVSVCNDLDRLN--RNFFWGSSEKKYKIHL 710


>ref|XP_002282016.2| PREDICTED: uncharacterized protein LOC100262933 [Vitis vinifera]
          Length = 2871

 Score = 51.2 bits (121), Expect(2) = 2e-06
 Identities = 32/84 (38%), Positives = 46/84 (54%)
 Frame = +3

Query: 306 LKQSTVASLPINLMQTHILPNAIIKTLGKKNY*QIFFWGSNNSKRKIDLIKRQTVKSPKT 485
           L +ST+AS+PI  M    +P  ++K L K    + F WG  N +RK+ L+K + V   K 
Sbjct: 410 LIKSTLASIPIYQMSLFRMPKIVVKRLEKLQ--RDFLWGGGNMERKVHLVKWEIVCGDKG 467

Query: 486 IGGLRMKKLYQ*NIALFSQASRRF 557
            GGL ++KL   N AL  +   RF
Sbjct: 468 RGGLGLRKLGLLNKALLGKWIWRF 491



 Score = 27.3 bits (59), Expect(2) = 2e-06
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +2

Query: 170 NKY*GFPLNHTKPYKQAFLGLIDTPHSKLASWRSKHPWQAGRITL 304
           ++Y G PL         + G+ +    +LA W+ +  ++ GRITL
Sbjct: 366 SQYLGLPLGAPNKASSVWDGVEERVRKRLALWKRQFIFKGGRITL 410


>gb|AEL30359.1| RNA-directed DNA polymerase [Arachis hypogaea]
          Length = 1613

 Score = 39.7 bits (91), Expect(2) = 3e-06
 Identities = 27/88 (30%), Positives = 41/88 (46%)
 Frame = +3

Query: 300  LFLKQSTVASLPINLMQTHILPNAIIKTLGKKNY*QIFFWGSNNSKRKIDLIKRQTVKSP 479
            L L    VA++P   MQ  I P  II  L  ++  + F W      R ++L+  + + +P
Sbjct: 1123 LCLVNFVVAAIPTYQMQVSIFPKGIISKL--ESMMRNFLWKGQVDGRGLNLVSWKVLVTP 1180

Query: 480  KTIGGLRMKKLYQ*NIALFSQASRRFLQ 563
            K  GGL ++  Y  NI L  +    F Q
Sbjct: 1181 KKYGGLGIRDPYCVNITLLGKLVWTFFQ 1208



 Score = 38.5 bits (88), Expect(2) = 3e-06
 Identities = 19/48 (39%), Positives = 30/48 (62%)
 Frame = +2

Query: 161  QIINKY*GFPLNHTKPYKQAFLGLIDTPHSKLASWRSKHPWQAGRITL 304
            Q + KY G  L+H++  + AF G++D   S+LASW+     +AGR+ L
Sbjct: 1078 QDLGKYLGVTLSHSRVTRLAFNGVLDKIRSRLASWKGSLLNRAGRLCL 1125


>emb|CCA66009.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1378

 Score = 45.4 bits (106), Expect(2) = 5e-06
 Identities = 26/92 (28%), Positives = 45/92 (48%)
 Frame = +3

Query: 306  LKQSTVASLPINLMQTHILPNAIIKTLGKKNY*QIFFWGSNNSKRKIDLIKRQTVKSPKT 485
            L QS  +S+P   MQ+  LP +    + +K+  + F WG    KR++ L+  + +   K 
Sbjct: 798  LIQSAFSSIPYYTMQSTKLPRSTCDDIDRKS--RSFLWGEQEGKRRVHLVAWENISKSKK 855

Query: 486  IGGLRMKKLYQ*NIALFSQASRRFLQNHTSAY 581
             GGL ++ + Q N A   +   R L   +S +
Sbjct: 856  EGGLGIRSMRQANSAFLVKLGWRLLAEPSSLW 887



 Score = 32.0 bits (71), Expect(2) = 5e-06
 Identities = 17/44 (38%), Positives = 25/44 (56%)
 Frame = +2

Query: 173 KY*GFPLNHTKPYKQAFLGLIDTPHSKLASWRSKHPWQAGRITL 304
           KY G P  + +  K+ +  L+D  + KLA W++K    AGR TL
Sbjct: 755 KYLGVPTINGRSSKREYQYLVDRINGKLAGWKTKTLSIAGRATL 798


>gb|ABW81175.1| non-LTR retrotransposon transposase [Arabidopsis cebennensis]
          Length = 799

 Score = 47.4 bits (111), Expect(2) = 5e-06
 Identities = 31/96 (32%), Positives = 50/96 (52%)
 Frame = +3

Query: 300 LFLKQSTVASLPINLMQTHILPNAIIKTLGKKNY*QIFFWGSNNSKRKIDLIKRQTVKSP 479
           L L +S ++S+PI+ M T  LP A +    + +  + F WGS+  K+K  L+    +   
Sbjct: 245 LTLTKSVLSSIPIHTMSTIALPKATLDGFDRIS--KSFVWGSSTEKKKQHLLAWNKIYCT 302

Query: 480 KTIGGLRMKKLYQ*NIALFSQASRRFLQNHTSAYWA 587
           K  GGL ++     N AL ++   R LQ+  S+ WA
Sbjct: 303 KQAGGLGIRSSRAMNTALLAKIGWRLLQD-KSSLWA 337



 Score = 30.0 bits (66), Expect(2) = 5e-06
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = +2

Query: 155 SNQIINKY*GFPLNHTKPYKQAFLGLIDTPHSKLASWRSKHPWQAGRITLS 307
           S + + KY G P+   +  K  F  ++    S+LA W+ +    AGR+TL+
Sbjct: 198 STKELGKYLGMPVLQKRINKDTFGEILLRVSSRLAGWKGRMLSLAGRLTLT 248


>emb|CAN72279.1| hypothetical protein VITISV_043410 [Vitis vinifera]
          Length = 1454

 Score = 52.4 bits (124), Expect(2) = 7e-06
 Identities = 33/84 (39%), Positives = 47/84 (55%)
 Frame = +3

Query: 306  LKQSTVASLPINLMQTHILPNAIIKTLGKKNY*QIFFWGSNNSKRKIDLIKRQTVKSPKT 485
            L +ST+AS+PI  M    +P  +++ L K    + F WG  N +RKI L+K + V   K 
Sbjct: 1276 LIKSTLASIPIYQMSLFRMPKIVVRRLEKLQ--RDFLWGGGNMERKIHLVKWEIVCGDKE 1333

Query: 486  IGGLRMKKLYQ*NIALFSQASRRF 557
             GGL ++KL   N AL S+   RF
Sbjct: 1334 RGGLGLRKLGLLNRALLSKWIWRF 1357



 Score = 24.6 bits (52), Expect(2) = 7e-06
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +2

Query: 176  Y*GFPLNHTKPYKQAFLGLIDTPHSKLASWRSKHPWQAGRITL 304
            Y G PL         + G+ +    +LA W+ +   + GRITL
Sbjct: 1234 YLGLPLGAPNKASSVWDGVEERMRRRLALWKRQFISKGGRITL 1276