BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Catharanthus22_contig00008197
         (4207 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ACO72600.1| RNA-dependent RNA polymerase 6 [Nicotiana glutinosa]  1787   0.0  
gb|ACA13601.1| RNA-dependent RNA polymerase [Nicotiana attenuata]    1780   0.0  
dbj|BAF96019.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]   1779   0.0  
gb|ADI52625.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]    1777   0.0  
emb|CAR47810.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]   1774   0.0  
gb|AAU21242.1| putative RNA-dependent RNA polymerase SDE1 [Nicot...  1773   0.0  
ref|XP_006346784.1| PREDICTED: RNA-dependent RNA polymerase 6-li...  1749   0.0  
ref|XP_002308662.1| SILENCING DEFECTIVE 1 family protein [Populu...  1741   0.0  
ref|NP_001266205.1| RNA-dependent RNA polymerase 6 [Solanum lyco...  1733   0.0  
ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [V...  1726   0.0  
ref|XP_002324295.1| SILENCING DEFECTIVE 1 family protein [Populu...  1721   0.0  
ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Rici...  1701   0.0  
gb|EOY29490.1| RNA-dependent RNA polymerase 6 [Theobroma cacao]      1680   0.0  
gb|EXB88201.1| RNA-dependent RNA polymerase 6 [Morus notabilis]      1665   0.0  
gb|EMJ26639.1| hypothetical protein PRUPE_ppa000422mg [Prunus pe...  1658   0.0  
ref|XP_006483356.1| PREDICTED: RNA-dependent RNA polymerase 6-li...  1650   0.0  
ref|XP_004291459.1| PREDICTED: RNA-dependent RNA polymerase 6-li...  1648   0.0  
ref|XP_003526410.1| PREDICTED: RNA-dependent RNA polymerase 6-li...  1640   0.0  
gb|ADG57590.1| RNA-dependent RNA polymerase 6 [Gossypium hirsutu...  1638   0.0  
ref|XP_003522618.1| PREDICTED: RNA-dependent RNA polymerase 6-li...  1636   0.0  

>gb|ACO72600.1| RNA-dependent RNA polymerase 6 [Nicotiana glutinosa]
          Length = 1197

 Score = 1787 bits (4629), Expect = 0.0
 Identities = 860/1198 (71%), Positives = 1009/1198 (84%)
 Frame = +1

Query: 307  MGSDRSEMNLIVTQISVGGFDSSVTAKKLLEYFEETIGIVWRCRLKTSSTPLDSYPAYNI 486
            MGS+ SE  L+VTQISVGGFD+ V AK L EY EE +G VWRCRLK SSTP DSYP Y+I
Sbjct: 1    MGSEGSEKELVVTQISVGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISSTPPDSYPTYDI 60

Query: 487  DVSSVQRKNDYRRVEPHAFVHFXXXXXXXXXXXXXXRGELILGNRSLKVSLGPENPHRMN 666
            D   VQR N+Y +V PHAFVHF                EL+LG + L VSLGPENP+R+N
Sbjct: 61   DAERVQRMNNYEKVVPHAFVHFASSESAKHALAAAGGNELVLGKKPLIVSLGPENPYRLN 120

Query: 667  ERRRTMRPFKLSNIQIEIGVLVSRDTFLLSWKGPPTGVDFLVDPFNDTCILLFSKDTAFA 846
            +RRRT  PFK S++ +E+GVLVS+  F++ W+GP TGVDFLVDPFN TC +LF+KDT F+
Sbjct: 121  QRRRTTMPFKFSDVSVEMGVLVSKHDFVVGWRGPRTGVDFLVDPFNGTCKILFTKDTVFS 180

Query: 847  FKGEVKCAVIRCNFKVEFKVREINEIKQYKDSSGYIILLQLASSPLVYYRTADDDIEESV 1026
            F+GE + A+I+CNFK+EF VREINEIK+ KD    +ILLQLASSPLV+YRTADDDIEESV
Sbjct: 181  FRGEARHAIIKCNFKIEFLVREINEIKKCKDFMSLVILLQLASSPLVFYRTADDDIEESV 240

Query: 1027 PYDLLDDDDPWIRTTDFTASGAIGRCNTYRLSIPPRNGATLKKALAYLKERRVNTHDMRL 1206
             +DLLDDDD WIRTTD T SGAIGRCNTYR+SI PRNG + +KA+AY    RV   +M  
Sbjct: 241  AFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFHRVPMVEMCN 300

Query: 1207 GEKLLIKHEPEFGIPLQDHFFCIQYQKDLAFKVLFLVNAIMHKGIINQHQMCNKFFDLLR 1386
             + L ++ EP+FG+ + D FFC Q  + ++FKVLFL NA++HKGI+NQHQM N+FF LLR
Sbjct: 301  RKMLRVRDEPDFGVSMSDPFFCFQ-NEGISFKVLFLANAVLHKGIVNQHQMINEFFYLLR 359

Query: 1387 IQPEEVNLAALQHIYSYKRPMYDAPKRLELVQKWLIRNPKLIERPRQLDDIIEVRRLIIT 1566
               EEVNLAAL+H++SYK P+ DA ++L  +QKWL++NPKL+ER  +LDDI+EVRRL+IT
Sbjct: 360  SHQEEVNLAALKHMFSYKWPVNDAIQKLAGIQKWLLKNPKLLERTGELDDIVEVRRLVIT 419

Query: 1567 PTRAYCVPPEMELSNRVLRHYRNVADRFLRVTFMDEGMQTMNKNVLDYYAASIVRDVTAN 1746
            PT+AYC+PP +ELSNRVLR+Y++VADRFLRVTFMDEGM+ +N+NVL YYAA+IVR++T+N
Sbjct: 420  PTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSN 479

Query: 1747 SKLQRTTMFQRVKSILSLGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDRDIGVANVKSWM 1926
            S  QRT +FQRVKSILS GF+LCGRKYSFLAFS+NQLRDRSAWFFAED  I V  + SWM
Sbjct: 480  SNPQRTAIFQRVKSILSKGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWM 539

Query: 1927 GRFTNRNVAKCAARMGQCFSSTYATVEVPISEVDWEVPDIERNGYVFSDGIGMISPDLAA 2106
            GRF+NRNVAKCAARMGQCFSSTYATVEVP SEV+ E+PDIERNGYVFSDGIGMIS DLA 
Sbjct: 540  GRFSNRNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSDGIGMISADLAI 599

Query: 2107 EVAERLQLSEDPPCAYQIRFAGCKGVIACWPPKYDGIRLYLRPSMNKFESNHKILEICSW 2286
            EVAE+L LS +PP AYQIR+AGCKGV+ACWP K DGIRL LRPSM KF+SNH ILEICSW
Sbjct: 600  EVAEKLHLSVNPPAAYQIRYAGCKGVVACWPTKNDGIRLSLRPSMKKFDSNHTILEICSW 659

Query: 2287 ARFQPGFLNRQIITLLSALDVQDNIFWKMQEMMIYKLNQMLVDTDVAFDVLTASCAEQGN 2466
             RFQPGFLNRQI+TLLS+LDV+D IFW+MQ+ MI  L++MLVD+DVAFDV+TASCAE GN
Sbjct: 660  TRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMIAGLDKMLVDSDVAFDVITASCAEAGN 719

Query: 2467 TAAIMLTAGFKPKTEPHLQGMLTTIRAAQLGDLRERARIFVSSGRWLMGCLDELAVLEQG 2646
            TAA+ML+AGFKP++EPHL+GML++IRA+QLGDLR +ARIFV SGRWLMGCLDEL  LEQG
Sbjct: 720  TAALMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQG 779

Query: 2647 QCFIQVSHPSLENCFSNHGSKFSDTRKNLQVIEGYVAVAKNPCLHPGDVRILKAVQAPQL 2826
            QCFIQVS PSLENCF  HGSKFSD +KNLQV++G V +AKNPCLHPGDVRIL+AV  P L
Sbjct: 780  QCFIQVSSPSLENCFVKHGSKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPSL 839

Query: 2827 QHLYDCIVFPQKGDRPHTNEASGSDLDGDLYFVTWDEKLIPPSQKSWPPMDYSPAEIKSL 3006
             HLYDC+VFPQKGDRPH+NEASGSDLDGDLYFVTWDE +IPPS+KSW PM+Y PAE+K L
Sbjct: 840  SHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENIIPPSKKSWIPMNYEPAEVKQL 899

Query: 3007 PREVKHTDIIEFFTKNMVTESLGAICNAHVVHADLSDKGALDDKCIKLAELAATAVDFPK 3186
             R+V H DII+FF+KNMV ESLG ICNAHVVHADLS+ GALD+KC+KLAELAA AVDFPK
Sbjct: 900  GRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFPK 959

Query: 3187 TGKIVTMPAEYKPKMYPDFMGKEEFQTYRSKKILGKLYRQVKDACDEEKVDTSGLAFVAK 3366
            TGK+VTMP + KPKMYPDFMGKEEFQ+Y+SKKILGKLYRQVKD CD E   ++GL  V K
Sbjct: 960  TGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDAEGEVSAGLEVVPK 1019

Query: 3367 DIPYDKDLEIAGSEAFIEEAWNFKCSYDGQLNGLLGQYKVNNEEEVVTGHIWSMPKYSSK 3546
            DIPYD  LEI GS  FI++AWN KCSYDGQLNGLLGQYKVN EEEVVTGHIWSMPKYS+K
Sbjct: 1020 DIPYDTTLEILGSTTFIDDAWNSKCSYDGQLNGLLGQYKVNREEEVVTGHIWSMPKYSAK 1079

Query: 3547 KLGDLKERLKHAYNNLRKDFRKVFEQMGTDFNLLSDEEKNVLYERKASAWYHVTYHPTWV 3726
            K G+LKERLKHAYN LRK+FR VFE+M  DF+LL D+EKN +YERKASAWY VTYHP WV
Sbjct: 1080 KQGELKERLKHAYNTLRKEFRNVFERMEPDFDLLPDDEKNDMYERKASAWYQVTYHPHWV 1139

Query: 3727 MKSLELQVPEGVGETVMLSFGWIAADYLARIKIRRKGIENANSLKPIDSLRKYVADRI 3900
             +SLELQ+P+ V  TVMLSF WIAADYLARIKIR +G+  ++S KPI+SL +Y+AD+I
Sbjct: 1140 ARSLELQIPDAVSSTVMLSFAWIAADYLARIKIRHRGLPYSDSTKPINSLGRYLADKI 1197


>gb|ACA13601.1| RNA-dependent RNA polymerase [Nicotiana attenuata]
          Length = 1197

 Score = 1780 bits (4611), Expect = 0.0
 Identities = 857/1198 (71%), Positives = 1010/1198 (84%)
 Frame = +1

Query: 307  MGSDRSEMNLIVTQISVGGFDSSVTAKKLLEYFEETIGIVWRCRLKTSSTPLDSYPAYNI 486
            MGS+ SE +L+VTQISVGGFD+ V AK L EY EE +G VWRCRLK SSTP DSYP +++
Sbjct: 1    MGSEGSEKDLVVTQISVGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISSTPPDSYPTFDV 60

Query: 487  DVSSVQRKNDYRRVEPHAFVHFXXXXXXXXXXXXXXRGELILGNRSLKVSLGPENPHRMN 666
            D   VQR  DY +V PHAFVHF                ELILG + L VSLGPENP+R+N
Sbjct: 61   DAERVQRMKDYEKVVPHAFVHFASSESAKHALAAAGGNELILGKKPLIVSLGPENPYRLN 120

Query: 667  ERRRTMRPFKLSNIQIEIGVLVSRDTFLLSWKGPPTGVDFLVDPFNDTCILLFSKDTAFA 846
            +RRRT  PFK S++ IE+GVLVS+D F++ W+GP TGVDFLVDPFN  C +LF+KDTAF+
Sbjct: 121  QRRRTTMPFKFSDVSIEMGVLVSKDDFVVGWRGPRTGVDFLVDPFNGACKILFTKDTAFS 180

Query: 847  FKGEVKCAVIRCNFKVEFKVREINEIKQYKDSSGYIILLQLASSPLVYYRTADDDIEESV 1026
            F+GE + A+I+CNFK+EF VREINEIK+ KD +  +ILLQLASSPLV+YRTADDDIEESV
Sbjct: 181  FRGEARHAIIKCNFKIEFLVREINEIKKCKDFTSLVILLQLASSPLVFYRTADDDIEESV 240

Query: 1027 PYDLLDDDDPWIRTTDFTASGAIGRCNTYRLSIPPRNGATLKKALAYLKERRVNTHDMRL 1206
             +DLLDDDD WIRTTD T SGAIGRCNTYR+SI PRNG + +KA+AY    RV   +M  
Sbjct: 241  AFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFHRVPMVEMCN 300

Query: 1207 GEKLLIKHEPEFGIPLQDHFFCIQYQKDLAFKVLFLVNAIMHKGIINQHQMCNKFFDLLR 1386
             + L ++ EP+FG+ + D FFC Q  + ++FKV+FLVNA++HKGI+NQHQM N+FF LLR
Sbjct: 301  RKMLRVRDEPDFGVSMSDPFFCFQ-NEGISFKVMFLVNAVLHKGIVNQHQMTNEFFYLLR 359

Query: 1387 IQPEEVNLAALQHIYSYKRPMYDAPKRLELVQKWLIRNPKLIERPRQLDDIIEVRRLIIT 1566
               EEVNLAAL+H++SYK P+ DA ++L  ++KWL++NPKL+ER  +LDDI+EVRRL+IT
Sbjct: 360  SHQEEVNLAALKHMFSYKWPVNDAIQKLVGIRKWLLKNPKLLERTGELDDIVEVRRLVIT 419

Query: 1567 PTRAYCVPPEMELSNRVLRHYRNVADRFLRVTFMDEGMQTMNKNVLDYYAASIVRDVTAN 1746
            PT+AYC+PP +ELSNRVLR+Y++VADRFLRVTFMDEGM+ +N+NVL YYAA+IVR++T+N
Sbjct: 420  PTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSN 479

Query: 1747 SKLQRTTMFQRVKSILSLGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDRDIGVANVKSWM 1926
            S  QRT +FQRVKSILS GF+LCGRKYSFLAFS+NQLRDRSAWFFAED  I V  + SWM
Sbjct: 480  SNPQRTAIFQRVKSILSRGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWM 539

Query: 1927 GRFTNRNVAKCAARMGQCFSSTYATVEVPISEVDWEVPDIERNGYVFSDGIGMISPDLAA 2106
            GRF+NRNVAKCAARMGQCFSSTYATVEVP SEV+ E+PDIERNGYVFSDGIGMIS DLA 
Sbjct: 540  GRFSNRNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSDGIGMISADLAV 599

Query: 2107 EVAERLQLSEDPPCAYQIRFAGCKGVIACWPPKYDGIRLYLRPSMNKFESNHKILEICSW 2286
            EVAE+L LS +PP AYQIR+AGCKGV+ACWP K DGIRL LRPSM KF+SNH ILEICSW
Sbjct: 600  EVAEKLHLSVNPPSAYQIRYAGCKGVVACWPTKNDGIRLSLRPSMKKFDSNHTILEICSW 659

Query: 2287 ARFQPGFLNRQIITLLSALDVQDNIFWKMQEMMIYKLNQMLVDTDVAFDVLTASCAEQGN 2466
             RFQPGFLNRQI+TLLS+LDV+D IFW+MQ+ MI  L++MLVD+DVAFDV+TASCAE GN
Sbjct: 660  TRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLDKMLVDSDVAFDVITASCAEAGN 719

Query: 2467 TAAIMLTAGFKPKTEPHLQGMLTTIRAAQLGDLRERARIFVSSGRWLMGCLDELAVLEQG 2646
            TAAIML+AGFKP++EPHL+GML++IRA+QLGDLR +ARIFV SGRWLMGCLDEL  LEQG
Sbjct: 720  TAAIMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQG 779

Query: 2647 QCFIQVSHPSLENCFSNHGSKFSDTRKNLQVIEGYVAVAKNPCLHPGDVRILKAVQAPQL 2826
            QCFIQVS PSLENCF  HG KFSD +KNLQV++G V +AKNPCLHPGDVRIL+AV  P L
Sbjct: 780  QCFIQVSSPSLENCFIKHGPKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPGL 839

Query: 2827 QHLYDCIVFPQKGDRPHTNEASGSDLDGDLYFVTWDEKLIPPSQKSWPPMDYSPAEIKSL 3006
             HLYDC+VFPQKGDRPH+NEASGSDLDGDLYFVTWDE LIPPS+KSW PM+Y PAE+K +
Sbjct: 840  HHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMNYEPAEVKQM 899

Query: 3007 PREVKHTDIIEFFTKNMVTESLGAICNAHVVHADLSDKGALDDKCIKLAELAATAVDFPK 3186
             R+V H DII+FF+KNMV ESLG ICNAHVVHADLS+ GALD+KC+KLAELAA AVDFPK
Sbjct: 900  GRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFPK 959

Query: 3187 TGKIVTMPAEYKPKMYPDFMGKEEFQTYRSKKILGKLYRQVKDACDEEKVDTSGLAFVAK 3366
            TGK+VTMP + KPKMYPDFMGKEEFQ+Y+SKKILGKLYRQVKD CD E   ++GL  V  
Sbjct: 960  TGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDTEGEVSAGLELVPN 1019

Query: 3367 DIPYDKDLEIAGSEAFIEEAWNFKCSYDGQLNGLLGQYKVNNEEEVVTGHIWSMPKYSSK 3546
            DIPYD  LEI GS AFI++AWN KCSYDGQL+GLLGQYKVN EEEVVTGHIWSMPKYS+K
Sbjct: 1020 DIPYDSSLEIPGSTAFIDDAWNSKCSYDGQLHGLLGQYKVNREEEVVTGHIWSMPKYSAK 1079

Query: 3547 KLGDLKERLKHAYNNLRKDFRKVFEQMGTDFNLLSDEEKNVLYERKASAWYHVTYHPTWV 3726
            K G+LKERLKHAYN LRK+FR VFE+M  DF+LL D+EKN +YERKASAWY VTY+P WV
Sbjct: 1080 KQGELKERLKHAYNTLRKEFRNVFERMEPDFDLLPDDEKNDMYERKASAWYQVTYNPHWV 1139

Query: 3727 MKSLELQVPEGVGETVMLSFGWIAADYLARIKIRRKGIENANSLKPIDSLRKYVADRI 3900
             +SLELQ+P+ V  TVMLSF WIAADYLARIKIR +G++ ++S KPI+SL +Y+ D I
Sbjct: 1140 ARSLELQLPDAVSSTVMLSFAWIAADYLARIKIRHRGLQYSDSTKPINSLGRYLVDNI 1197


>dbj|BAF96019.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
          Length = 1197

 Score = 1779 bits (4607), Expect = 0.0
 Identities = 857/1198 (71%), Positives = 1008/1198 (84%)
 Frame = +1

Query: 307  MGSDRSEMNLIVTQISVGGFDSSVTAKKLLEYFEETIGIVWRCRLKTSSTPLDSYPAYNI 486
            MGS+ SE  L+VTQIS GGFD+ V AK L EY EE +G VWRCRLK SSTP DSYP Y+I
Sbjct: 1    MGSEGSEKELVVTQISGGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISSTPPDSYPTYDI 60

Query: 487  DVSSVQRKNDYRRVEPHAFVHFXXXXXXXXXXXXXXRGELILGNRSLKVSLGPENPHRMN 666
            D   VQR N+Y +V PHAFVHF                ELILG + L VSLGPENP+R+N
Sbjct: 61   DAEKVQRMNNYEKVVPHAFVHFASSESAKHALAAAGGNELILGKKPLIVSLGPENPYRLN 120

Query: 667  ERRRTMRPFKLSNIQIEIGVLVSRDTFLLSWKGPPTGVDFLVDPFNDTCILLFSKDTAFA 846
            +RRRT  PFK S++ +E+GVLVS+D F++ W+GP TGVDF VDPFN TC +LF+KDTAF+
Sbjct: 121  QRRRTTMPFKFSDVSVEMGVLVSKDDFVVGWRGPRTGVDFFVDPFNGTCKILFTKDTAFS 180

Query: 847  FKGEVKCAVIRCNFKVEFKVREINEIKQYKDSSGYIILLQLASSPLVYYRTADDDIEESV 1026
            F+GE + A+I+CNFK+EF VREINEIK+ KD +  +ILLQLASSPLV+YRTADDDIEESV
Sbjct: 181  FRGEARHAIIKCNFKIEFMVREINEIKKCKDFTSLVILLQLASSPLVFYRTADDDIEESV 240

Query: 1027 PYDLLDDDDPWIRTTDFTASGAIGRCNTYRLSIPPRNGATLKKALAYLKERRVNTHDMRL 1206
             +DLLDDDD WIRTTD T SGAIGRCNTYR+SI PRNG + +KA+AY    RV   +M  
Sbjct: 241  AFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFHRVPMVEMCN 300

Query: 1207 GEKLLIKHEPEFGIPLQDHFFCIQYQKDLAFKVLFLVNAIMHKGIINQHQMCNKFFDLLR 1386
             + L +K EP+FG+ + D FFC Q  + ++FKV+FLVNA++HKGI+NQHQM N+FF LLR
Sbjct: 301  RKMLRVKDEPDFGVSMSDPFFCFQ-NEGISFKVMFLVNAVLHKGIVNQHQMTNEFFYLLR 359

Query: 1387 IQPEEVNLAALQHIYSYKRPMYDAPKRLELVQKWLIRNPKLIERPRQLDDIIEVRRLIIT 1566
             + EEVN AAL+H++SYK P+ DA ++L  +QKWL++NPKL++R  +LDDI+EVRRL+IT
Sbjct: 360  SRQEEVNSAALKHMFSYKWPVNDAIQKLVGIQKWLLKNPKLLDRTGELDDIVEVRRLVIT 419

Query: 1567 PTRAYCVPPEMELSNRVLRHYRNVADRFLRVTFMDEGMQTMNKNVLDYYAASIVRDVTAN 1746
            PT+AYC+PP +ELSNRVLR+Y++VADRFLRVTFMDEGM+ +N+NVL YYAA+IVR++T+N
Sbjct: 420  PTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSN 479

Query: 1747 SKLQRTTMFQRVKSILSLGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDRDIGVANVKSWM 1926
            S  QRT +FQRVKSILS GF+LCGRKYSFLAFS+NQLRDRSAWFFAED  I V  + SWM
Sbjct: 480  SNPQRTAIFQRVKSILSKGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWM 539

Query: 1927 GRFTNRNVAKCAARMGQCFSSTYATVEVPISEVDWEVPDIERNGYVFSDGIGMISPDLAA 2106
            GRF+NRNVAKCAARMGQCFSSTYATVEVP  EV+ E+PDIERNGYVFSDGIGMIS DLA 
Sbjct: 540  GRFSNRNVAKCAARMGQCFSSTYATVEVPSREVNSELPDIERNGYVFSDGIGMISADLAI 599

Query: 2107 EVAERLQLSEDPPCAYQIRFAGCKGVIACWPPKYDGIRLYLRPSMNKFESNHKILEICSW 2286
            EVAE+L LS +PP AYQIR+AGCKGV+ACWP K DGIRL LRPSM KF+SNH ILEICSW
Sbjct: 600  EVAEKLHLSVNPPSAYQIRYAGCKGVVACWPTKNDGIRLSLRPSMKKFDSNHTILEICSW 659

Query: 2287 ARFQPGFLNRQIITLLSALDVQDNIFWKMQEMMIYKLNQMLVDTDVAFDVLTASCAEQGN 2466
             RFQPGFLNRQI+TLLS+LDV+D IFW+MQ+ MI  L++MLVD+DVAFDV+TASCAE GN
Sbjct: 660  TRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLDKMLVDSDVAFDVITASCAEAGN 719

Query: 2467 TAAIMLTAGFKPKTEPHLQGMLTTIRAAQLGDLRERARIFVSSGRWLMGCLDELAVLEQG 2646
            TAAIML+AGFKP++EPHL+GML++IRA+QLGDLR +ARIFV SGRWLMGCLDEL  LEQG
Sbjct: 720  TAAIMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQG 779

Query: 2647 QCFIQVSHPSLENCFSNHGSKFSDTRKNLQVIEGYVAVAKNPCLHPGDVRILKAVQAPQL 2826
            QCFIQVS PSLENCF  HG KFSD ++NLQV++G V +AKNPCLHPGDVRIL+AV  P L
Sbjct: 780  QCFIQVSSPSLENCFVKHGPKFSDIKQNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPSL 839

Query: 2827 QHLYDCIVFPQKGDRPHTNEASGSDLDGDLYFVTWDEKLIPPSQKSWPPMDYSPAEIKSL 3006
             HLYDC+VFPQKGDRPH+NEASGSDLDGDLYFVTWDE LIPPS+KSW PM+Y PAE+K L
Sbjct: 840  SHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMNYEPAEVKQL 899

Query: 3007 PREVKHTDIIEFFTKNMVTESLGAICNAHVVHADLSDKGALDDKCIKLAELAATAVDFPK 3186
             R+V H DII+FF+KNMV ESLG ICNAHVVHADLS+ GALD+KC+KLAELAA AVDFPK
Sbjct: 900  GRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFPK 959

Query: 3187 TGKIVTMPAEYKPKMYPDFMGKEEFQTYRSKKILGKLYRQVKDACDEEKVDTSGLAFVAK 3366
            TGK+VTMP + KPKMYPDFMGKEEFQ+Y+SKKILGKLYRQVKD CD E   ++GL  V K
Sbjct: 960  TGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDAEGEVSAGLEVVPK 1019

Query: 3367 DIPYDKDLEIAGSEAFIEEAWNFKCSYDGQLNGLLGQYKVNNEEEVVTGHIWSMPKYSSK 3546
            DIPYD  LEI GS AFI++AWN KCSYDGQL+GLLGQYKVN EEEVVTGHIWSMPKYS+K
Sbjct: 1020 DIPYDSTLEILGSTAFIDDAWNSKCSYDGQLHGLLGQYKVNREEEVVTGHIWSMPKYSAK 1079

Query: 3547 KLGDLKERLKHAYNNLRKDFRKVFEQMGTDFNLLSDEEKNVLYERKASAWYHVTYHPTWV 3726
            K G+LKERLKHAYN LRK+FR VFE+M  DF+LL D+EKN +YERKASAWY VTYHP WV
Sbjct: 1080 KQGELKERLKHAYNTLRKEFRNVFERMDPDFDLLPDDEKNDMYERKASAWYQVTYHPHWV 1139

Query: 3727 MKSLELQVPEGVGETVMLSFGWIAADYLARIKIRRKGIENANSLKPIDSLRKYVADRI 3900
             +SLELQ+P+ V  TVMLSF WIAADYLARIKIR + ++ ++S KPI+SL +Y+ D I
Sbjct: 1140 ARSLELQLPDAVSNTVMLSFAWIAADYLARIKIRHRRLQYSDSTKPINSLGRYLVDNI 1197


>gb|ADI52625.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
          Length = 1197

 Score = 1777 bits (4602), Expect = 0.0
 Identities = 856/1198 (71%), Positives = 1007/1198 (84%)
 Frame = +1

Query: 307  MGSDRSEMNLIVTQISVGGFDSSVTAKKLLEYFEETIGIVWRCRLKTSSTPLDSYPAYNI 486
            MGS+  E  L+VTQISVGGFD+ V AK L EY EE +G VWRCRLK SSTP DSYP Y+I
Sbjct: 1    MGSEGCEKELVVTQISVGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISSTPPDSYPTYDI 60

Query: 487  DVSSVQRKNDYRRVEPHAFVHFXXXXXXXXXXXXXXRGELILGNRSLKVSLGPENPHRMN 666
            D   VQR N+Y +V PHAFVHF                ELILG + L VSLGPENP+R+N
Sbjct: 61   DAEKVQRMNNYEKVVPHAFVHFASSESAKHALAAAGGNELILGKKPLIVSLGPENPYRLN 120

Query: 667  ERRRTMRPFKLSNIQIEIGVLVSRDTFLLSWKGPPTGVDFLVDPFNDTCILLFSKDTAFA 846
            +RRRT  PFK S++ +E+GVLVS+D F++ W+GP TGVDFLVDPFN TC +LF+KDTAF+
Sbjct: 121  QRRRTTMPFKFSDVSVEMGVLVSKDDFVVGWRGPRTGVDFLVDPFNGTCKILFTKDTAFS 180

Query: 847  FKGEVKCAVIRCNFKVEFKVREINEIKQYKDSSGYIILLQLASSPLVYYRTADDDIEESV 1026
            F+GE + A+I+CNFK+EF VREINEIK+ KD +  +IL QLASSPLV+YRTADDDIEESV
Sbjct: 181  FRGEARHAIIKCNFKIEFLVREINEIKKCKDFTSLVILFQLASSPLVFYRTADDDIEESV 240

Query: 1027 PYDLLDDDDPWIRTTDFTASGAIGRCNTYRLSIPPRNGATLKKALAYLKERRVNTHDMRL 1206
             +DLLDDDD WIRTTD T SGAIGRCNTYR+SI PRNG + +KA+AY   RRV   +M  
Sbjct: 241  AFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFRRVPMVEMCN 300

Query: 1207 GEKLLIKHEPEFGIPLQDHFFCIQYQKDLAFKVLFLVNAIMHKGIINQHQMCNKFFDLLR 1386
             + L +K EP+FG+ + D FFC Q  + ++F+VLFLVNA++HKGI+NQHQM N+FF LLR
Sbjct: 301  RKMLRVKDEPDFGVSMSDPFFCFQ-NEGISFRVLFLVNAVLHKGIVNQHQMANEFFYLLR 359

Query: 1387 IQPEEVNLAALQHIYSYKRPMYDAPKRLELVQKWLIRNPKLIERPRQLDDIIEVRRLIIT 1566
               EEVN AAL+H++SYK P+ DA ++L  +QKWL++NPKL++R  +LDDI+EVRRL+IT
Sbjct: 360  SHQEEVNSAALKHMFSYKWPVNDAIQKLAGIQKWLLKNPKLLDRTGELDDIVEVRRLVIT 419

Query: 1567 PTRAYCVPPEMELSNRVLRHYRNVADRFLRVTFMDEGMQTMNKNVLDYYAASIVRDVTAN 1746
            PT+AYC+PP +ELSNRVLR+Y++VADRFLRVTFMDEGM+ +N+NVL YYAA+IVR++T+N
Sbjct: 420  PTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSN 479

Query: 1747 SKLQRTTMFQRVKSILSLGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDRDIGVANVKSWM 1926
            S  QRT +FQRVKSILS GF+LCGRKYSFLAFS+NQLRDRSAWFFAED  I V  + SWM
Sbjct: 480  SNPQRTAIFQRVKSILSKGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWM 539

Query: 1927 GRFTNRNVAKCAARMGQCFSSTYATVEVPISEVDWEVPDIERNGYVFSDGIGMISPDLAA 2106
            GRF+NRNVAKCAARMGQCFSSTYATVEVP SEV+ E+PDIERNGYVFSDGIGMIS DLA 
Sbjct: 540  GRFSNRNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSDGIGMISADLAI 599

Query: 2107 EVAERLQLSEDPPCAYQIRFAGCKGVIACWPPKYDGIRLYLRPSMNKFESNHKILEICSW 2286
            EVAE+L LS +PP AYQIR+AGCKGV+ACWP K DGIRL LRPSM KF+SNH ILEICSW
Sbjct: 600  EVAEKLHLSVNPPSAYQIRYAGCKGVVACWPTKNDGIRLSLRPSMKKFDSNHTILEICSW 659

Query: 2287 ARFQPGFLNRQIITLLSALDVQDNIFWKMQEMMIYKLNQMLVDTDVAFDVLTASCAEQGN 2466
             RFQPGFLNRQI+TLLS+LDV+D IFW+MQ+ MI  L++MLVD+DVAFDV+TASCAE GN
Sbjct: 660  TRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLDKMLVDSDVAFDVITASCAEAGN 719

Query: 2467 TAAIMLTAGFKPKTEPHLQGMLTTIRAAQLGDLRERARIFVSSGRWLMGCLDELAVLEQG 2646
            TAA+ML+AGFKP++EPHL+GML++IRA+QLGDLR +ARIFV SGRWLMGCLDEL  LEQG
Sbjct: 720  TAALMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQG 779

Query: 2647 QCFIQVSHPSLENCFSNHGSKFSDTRKNLQVIEGYVAVAKNPCLHPGDVRILKAVQAPQL 2826
            QCFIQVS PSLENCF  HG KFSD +KNLQV++G V +AKNPCLHPGDVRIL+AV  P L
Sbjct: 780  QCFIQVSSPSLENCFVKHGPKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPSL 839

Query: 2827 QHLYDCIVFPQKGDRPHTNEASGSDLDGDLYFVTWDEKLIPPSQKSWPPMDYSPAEIKSL 3006
             HLYDC+VFPQKGDRPH+NEASGSDLDGDLYFVTWDE LIPPS+KSW PM+Y PAE+K L
Sbjct: 840  SHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMNYEPAEVKQL 899

Query: 3007 PREVKHTDIIEFFTKNMVTESLGAICNAHVVHADLSDKGALDDKCIKLAELAATAVDFPK 3186
             R+V H DII+FF+KNMV ESLG ICNAHVVHADLS+ GALD+KC+KLAELAA AVDFPK
Sbjct: 900  GRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFPK 959

Query: 3187 TGKIVTMPAEYKPKMYPDFMGKEEFQTYRSKKILGKLYRQVKDACDEEKVDTSGLAFVAK 3366
            TGK+VTMP + KPKMYPDFMGKEEFQ+Y+SKKILGKLYRQVKD CD E   ++GL  V K
Sbjct: 960  TGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDAEGEVSAGLEVVPK 1019

Query: 3367 DIPYDKDLEIAGSEAFIEEAWNFKCSYDGQLNGLLGQYKVNNEEEVVTGHIWSMPKYSSK 3546
            DIPYD  LEI GS  FI++AWN KCSYDGQLNGLLGQYKVN EEEVVTG+IWSMPKY++K
Sbjct: 1020 DIPYDTTLEILGSTTFIDDAWNSKCSYDGQLNGLLGQYKVNREEEVVTGYIWSMPKYNAK 1079

Query: 3547 KLGDLKERLKHAYNNLRKDFRKVFEQMGTDFNLLSDEEKNVLYERKASAWYHVTYHPTWV 3726
            K G+LKERLKHAYN LRK+FR VFE+M  DF+LL D+EKN +YERKASAWY VTYHP WV
Sbjct: 1080 KQGELKERLKHAYNTLRKEFRNVFERMEPDFDLLPDDEKNDMYERKASAWYQVTYHPHWV 1139

Query: 3727 MKSLELQVPEGVGETVMLSFGWIAADYLARIKIRRKGIENANSLKPIDSLRKYVADRI 3900
             +SLELQ+ + V  TVMLSF WIAADYLARIKIR + ++ ++S KPI+SL +Y+ D I
Sbjct: 1140 ARSLELQLADAVSNTVMLSFAWIAADYLARIKIRHRRLQYSDSTKPINSLGRYLVDNI 1197


>emb|CAR47810.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
          Length = 1197

 Score = 1774 bits (4594), Expect = 0.0
 Identities = 854/1198 (71%), Positives = 1009/1198 (84%)
 Frame = +1

Query: 307  MGSDRSEMNLIVTQISVGGFDSSVTAKKLLEYFEETIGIVWRCRLKTSSTPLDSYPAYNI 486
            MGS+ SE +L+VTQISVGGFD+ V AK L EY EE +G VWRCRLK S+TP DSYP Y+I
Sbjct: 1    MGSEGSEKDLVVTQISVGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISATPPDSYPTYDI 60

Query: 487  DVSSVQRKNDYRRVEPHAFVHFXXXXXXXXXXXXXXRGELILGNRSLKVSLGPENPHRMN 666
            D   V R  DY +V PHAFVHF                ELILG + L VSLGPENP+R+N
Sbjct: 61   DAERVHRMKDYEKVVPHAFVHFASSESAKHALAAAGGNELILGKKPLIVSLGPENPYRLN 120

Query: 667  ERRRTMRPFKLSNIQIEIGVLVSRDTFLLSWKGPPTGVDFLVDPFNDTCILLFSKDTAFA 846
            +RRRT  PFK S++ +E+GVLVS+D F++ W+GP TGVDFLVDPFN TC +LF+KDTAF+
Sbjct: 121  QRRRTTMPFKFSDVSVEMGVLVSKDDFVVGWRGPRTGVDFLVDPFNGTCKILFTKDTAFS 180

Query: 847  FKGEVKCAVIRCNFKVEFKVREINEIKQYKDSSGYIILLQLASSPLVYYRTADDDIEESV 1026
            F+GE + A+I+CNFK+EF VREINEIK+ KD +  +IL QLASSPLV+YRTADDDIEESV
Sbjct: 181  FRGEARHAIIKCNFKIEFLVREINEIKKCKDFTSLVILFQLASSPLVFYRTADDDIEESV 240

Query: 1027 PYDLLDDDDPWIRTTDFTASGAIGRCNTYRLSIPPRNGATLKKALAYLKERRVNTHDMRL 1206
             +DLLDDDD WIRTTD T SGAIGRCNTYR+SI PRNG + +KA+AY   RRV   +M  
Sbjct: 241  AFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFRRVPMVEMCN 300

Query: 1207 GEKLLIKHEPEFGIPLQDHFFCIQYQKDLAFKVLFLVNAIMHKGIINQHQMCNKFFDLLR 1386
             + L +K EP+FG+ + D FFC Q  + ++FKV+FLVNA++HKGI+NQHQM N+FF LLR
Sbjct: 301  RKMLRVKDEPDFGVSMSDPFFCFQ-NEGISFKVMFLVNAVLHKGIVNQHQMTNEFFYLLR 359

Query: 1387 IQPEEVNLAALQHIYSYKRPMYDAPKRLELVQKWLIRNPKLIERPRQLDDIIEVRRLIIT 1566
             + EEVNLAAL+H++SYK P+ DA ++L  +QKWL++NPKL+ER  +LDDI+EVRRL+IT
Sbjct: 360  SRQEEVNLAALKHMFSYKWPVNDAIQKLVGIQKWLLKNPKLLERTGELDDIVEVRRLVIT 419

Query: 1567 PTRAYCVPPEMELSNRVLRHYRNVADRFLRVTFMDEGMQTMNKNVLDYYAASIVRDVTAN 1746
            PT+AYC+PP +ELSNRVLR+Y++VADRFLRVTFMDEGM+ +N+NVL YYAA+IVR++T+N
Sbjct: 420  PTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSN 479

Query: 1747 SKLQRTTMFQRVKSILSLGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDRDIGVANVKSWM 1926
            S  QRT +FQRVKSILS GF+LCGRKYSFLAFS+NQLRDRSAWFFAED  I V  + SWM
Sbjct: 480  SNPQRTAIFQRVKSILSRGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWM 539

Query: 1927 GRFTNRNVAKCAARMGQCFSSTYATVEVPISEVDWEVPDIERNGYVFSDGIGMISPDLAA 2106
            GRF+NRNVAKCAARMGQCFSSTYATVEVP SEV+ E+PDIERNGYVFSDGIGMIS DLA 
Sbjct: 540  GRFSNRNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSDGIGMISADLAI 599

Query: 2107 EVAERLQLSEDPPCAYQIRFAGCKGVIACWPPKYDGIRLYLRPSMNKFESNHKILEICSW 2286
            EVAE+L L+ +PP AYQIR+AG KGV+ACWP K DGI L LRPSM KF+SNH ILEICSW
Sbjct: 600  EVAEKLHLNVNPPSAYQIRYAGYKGVVACWPTKNDGILLSLRPSMKKFDSNHTILEICSW 659

Query: 2287 ARFQPGFLNRQIITLLSALDVQDNIFWKMQEMMIYKLNQMLVDTDVAFDVLTASCAEQGN 2466
             RFQPGFLNRQI+TLLS+LDV+D IFW+MQ+ MI  L++MLVD+DVAFDV+TASCAE GN
Sbjct: 660  TRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLDKMLVDSDVAFDVITASCAEAGN 719

Query: 2467 TAAIMLTAGFKPKTEPHLQGMLTTIRAAQLGDLRERARIFVSSGRWLMGCLDELAVLEQG 2646
            TAA+ML+AGFKP++EPHL+GML++IRA+QLGDLR +ARIFV SGRWLMGCLDEL  LEQG
Sbjct: 720  TAALMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQG 779

Query: 2647 QCFIQVSHPSLENCFSNHGSKFSDTRKNLQVIEGYVAVAKNPCLHPGDVRILKAVQAPQL 2826
            QCFIQVS PSLENCF  HG KFSD +KNLQV++G V +AKNPCLHPGDVRIL+AV  P L
Sbjct: 780  QCFIQVSSPSLENCFVKHGPKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPSL 839

Query: 2827 QHLYDCIVFPQKGDRPHTNEASGSDLDGDLYFVTWDEKLIPPSQKSWPPMDYSPAEIKSL 3006
             HLYDC+VFPQKGDRPH+NEASGSDLDGDLYFVTWDE LIPPS+KSW PM+Y PAE+K L
Sbjct: 840  SHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMNYEPAEVKQL 899

Query: 3007 PREVKHTDIIEFFTKNMVTESLGAICNAHVVHADLSDKGALDDKCIKLAELAATAVDFPK 3186
             R+V H DII+FF+KNMV ESLG ICNAHVVHADLS+ GALD+KC+KLAELAA AVDFPK
Sbjct: 900  GRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFPK 959

Query: 3187 TGKIVTMPAEYKPKMYPDFMGKEEFQTYRSKKILGKLYRQVKDACDEEKVDTSGLAFVAK 3366
            TGK+VTMP + KPKMYPDFMGKEEFQ+Y+SKKILGKLYRQVKD CD E   ++GL  V K
Sbjct: 960  TGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDAEGEVSAGLEVVPK 1019

Query: 3367 DIPYDKDLEIAGSEAFIEEAWNFKCSYDGQLNGLLGQYKVNNEEEVVTGHIWSMPKYSSK 3546
            DIPYD  L I GS  FI++AWN KCSYDGQL+GLLGQYKVN EEEVVTGHIWSMPKYS+K
Sbjct: 1020 DIPYDTTLVIPGSTVFIDDAWNSKCSYDGQLHGLLGQYKVNREEEVVTGHIWSMPKYSAK 1079

Query: 3547 KLGDLKERLKHAYNNLRKDFRKVFEQMGTDFNLLSDEEKNVLYERKASAWYHVTYHPTWV 3726
            K G+LKERLKHAYN LRK+FR VFE+M  DF+LL D+EKN +YERKASAWY VTY+P WV
Sbjct: 1080 KQGELKERLKHAYNTLRKEFRNVFERMDPDFDLLPDDEKNDMYERKASAWYQVTYNPHWV 1139

Query: 3727 MKSLELQVPEGVGETVMLSFGWIAADYLARIKIRRKGIENANSLKPIDSLRKYVADRI 3900
             +SLELQ+P+ +  TVMLSF WIAADYLARIKIR +G++ ++S KPI+SL +Y+ D+I
Sbjct: 1140 ARSLELQLPDAISSTVMLSFAWIAADYLARIKIRHRGLQYSDSTKPINSLGRYLVDKI 1197


>gb|AAU21242.1| putative RNA-dependent RNA polymerase SDE1 [Nicotiana benthamiana]
          Length = 1197

 Score = 1773 bits (4591), Expect = 0.0
 Identities = 853/1198 (71%), Positives = 1005/1198 (83%)
 Frame = +1

Query: 307  MGSDRSEMNLIVTQISVGGFDSSVTAKKLLEYFEETIGIVWRCRLKTSSTPLDSYPAYNI 486
            MGS+ SE +L+VTQISVGGFD+ V AK L EY EE +G VWRCRLK S+TP DSYP Y++
Sbjct: 1    MGSEGSEKDLVVTQISVGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISATPPDSYPTYDV 60

Query: 487  DVSSVQRKNDYRRVEPHAFVHFXXXXXXXXXXXXXXRGELILGNRSLKVSLGPENPHRMN 666
            D + V R  DY +V PHAFVHF                 LILG + L VSLGPENP+R+N
Sbjct: 61   DAARVHRMKDYEKVVPHAFVHFASSESAKYALAAAGGNGLILGKKPLIVSLGPENPYRLN 120

Query: 667  ERRRTMRPFKLSNIQIEIGVLVSRDTFLLSWKGPPTGVDFLVDPFNDTCILLFSKDTAFA 846
            +RRRT  PFK S++ +E+GVLVS+D F++ W+GP TGVDF VDPFN  C +LF+KDTAF+
Sbjct: 121  QRRRTTMPFKFSDVSVEMGVLVSKDDFVVGWRGPRTGVDFFVDPFNGACKILFTKDTAFS 180

Query: 847  FKGEVKCAVIRCNFKVEFKVREINEIKQYKDSSGYIILLQLASSPLVYYRTADDDIEESV 1026
            F+GE K A+I+CNFK+EF VREINEIK++KD +  +ILLQLASSPLV+YRTADDDIEESV
Sbjct: 181  FRGEAKHAIIKCNFKIEFMVREINEIKKFKDFTSLVILLQLASSPLVFYRTADDDIEESV 240

Query: 1027 PYDLLDDDDPWIRTTDFTASGAIGRCNTYRLSIPPRNGATLKKALAYLKERRVNTHDMRL 1206
             +DLLDDDD WIRTTD T SGAIGRCNTYR+SI PRNG + +KA+AY    RV   +M  
Sbjct: 241  AFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFHRVPMVEMCN 300

Query: 1207 GEKLLIKHEPEFGIPLQDHFFCIQYQKDLAFKVLFLVNAIMHKGIINQHQMCNKFFDLLR 1386
             + L ++ EP+FG+ + D FFC Q  + ++FKV+FLVNA++HKGI+NQHQM N+FF LLR
Sbjct: 301  RKMLRVRDEPDFGVSMSDPFFCFQ-NEGISFKVMFLVNAVLHKGIVNQHQMTNEFFYLLR 359

Query: 1387 IQPEEVNLAALQHIYSYKRPMYDAPKRLELVQKWLIRNPKLIERPRQLDDIIEVRRLIIT 1566
               EEVNLAAL+H++SYK P+ DA ++L  +QKWL++NPKL+ER  +LDDI+EVRRL+IT
Sbjct: 360  SHQEEVNLAALKHMFSYKWPVNDAIQKLVGIQKWLLKNPKLLERTGELDDIVEVRRLVIT 419

Query: 1567 PTRAYCVPPEMELSNRVLRHYRNVADRFLRVTFMDEGMQTMNKNVLDYYAASIVRDVTAN 1746
            PT+AYC+PP +ELSNRVLR+Y++VADRFLRVTFMDEGM+ +N+NVL YYAA+IVR++T+N
Sbjct: 420  PTKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSN 479

Query: 1747 SKLQRTTMFQRVKSILSLGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDRDIGVANVKSWM 1926
            S  QRT +FQRVKSILS GF+LCGRKYSFLAFS+NQLRDRSAWFFAED  I V  + SWM
Sbjct: 480  SNPQRTAIFQRVKSILSRGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWM 539

Query: 1927 GRFTNRNVAKCAARMGQCFSSTYATVEVPISEVDWEVPDIERNGYVFSDGIGMISPDLAA 2106
            GRF+NRNVAKCAARMGQCFSSTYATVEVP SEV+ E+PDIERNGYVFSDGIGMIS DLA 
Sbjct: 540  GRFSNRNVAKCAARMGQCFSSTYATVEVPSSEVNSELPDIERNGYVFSDGIGMISADLAL 599

Query: 2107 EVAERLQLSEDPPCAYQIRFAGCKGVIACWPPKYDGIRLYLRPSMNKFESNHKILEICSW 2286
            EVAE+L LS +PP AYQIR+AGCKGV+ACWP K DGI L LRPSM KF+SNH ILEICSW
Sbjct: 600  EVAEKLHLSVNPPSAYQIRYAGCKGVVACWPTKNDGILLSLRPSMKKFDSNHTILEICSW 659

Query: 2287 ARFQPGFLNRQIITLLSALDVQDNIFWKMQEMMIYKLNQMLVDTDVAFDVLTASCAEQGN 2466
             RFQPGFLNRQI+TLLS+LDV+D IFW+MQ+ MI  LN+MLVD+DVAFDV+TASCAE GN
Sbjct: 660  TRFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLNKMLVDSDVAFDVITASCAEAGN 719

Query: 2467 TAAIMLTAGFKPKTEPHLQGMLTTIRAAQLGDLRERARIFVSSGRWLMGCLDELAVLEQG 2646
            TAAIML+AGFKP++EPHL+GML++IRA+QLGDLR +ARIFV SGRWLMGCLDEL  LEQG
Sbjct: 720  TAAIMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQG 779

Query: 2647 QCFIQVSHPSLENCFSNHGSKFSDTRKNLQVIEGYVAVAKNPCLHPGDVRILKAVQAPQL 2826
            QCFIQVS PSLENCF  HG KFSD +KNLQV++G V +AKNPCLHPGDVRIL+AV  P L
Sbjct: 780  QCFIQVSSPSLENCFIKHGPKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPGL 839

Query: 2827 QHLYDCIVFPQKGDRPHTNEASGSDLDGDLYFVTWDEKLIPPSQKSWPPMDYSPAEIKSL 3006
             HLYDC+VFPQKGDRPH+NEASGSDLDGDLYFVTWDE LIPPS+KSW PM+Y PAE+K L
Sbjct: 840  HHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMNYEPAEVKQL 899

Query: 3007 PREVKHTDIIEFFTKNMVTESLGAICNAHVVHADLSDKGALDDKCIKLAELAATAVDFPK 3186
             R+V H DII+FF+KNMV ESLG ICNAHVVHADLS+ GALD+KC+KLAELAA AVDFPK
Sbjct: 900  GRQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFPK 959

Query: 3187 TGKIVTMPAEYKPKMYPDFMGKEEFQTYRSKKILGKLYRQVKDACDEEKVDTSGLAFVAK 3366
            TGK+VTMP + KPKMYPDFMGKEEFQ+Y+SKKILGKLYRQVKD CD E   ++GL  V  
Sbjct: 960  TGKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDTEGEVSAGLELVPN 1019

Query: 3367 DIPYDKDLEIAGSEAFIEEAWNFKCSYDGQLNGLLGQYKVNNEEEVVTGHIWSMPKYSSK 3546
            DIPYD  LEI GS  F+ +AWN KCSYDGQL+GLLGQYKVN EEEVVTGHIWSMPKYS+K
Sbjct: 1020 DIPYDSSLEIPGSTVFMGDAWNCKCSYDGQLHGLLGQYKVNREEEVVTGHIWSMPKYSAK 1079

Query: 3547 KLGDLKERLKHAYNNLRKDFRKVFEQMGTDFNLLSDEEKNVLYERKASAWYHVTYHPTWV 3726
            K G+LKERLKHAYN LRK+FR VFE+M  DF+LL D+EKN +YERKASAWY VTY+P WV
Sbjct: 1080 KQGELKERLKHAYNMLRKEFRNVFERMDPDFDLLPDDEKNDMYERKASAWYQVTYNPHWV 1139

Query: 3727 MKSLELQVPEGVGETVMLSFGWIAADYLARIKIRRKGIENANSLKPIDSLRKYVADRI 3900
             +SLELQ+P+ V  TVMLSF WIAADYLARI IR +G++ ++S KPI+SL +Y+ D I
Sbjct: 1140 ARSLELQLPDAVSSTVMLSFAWIAADYLARINIRHRGLQYSDSTKPINSLGRYLVDNI 1197


>ref|XP_006346784.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X1 [Solanum
            tuberosum] gi|565360032|ref|XP_006346785.1| PREDICTED:
            RNA-dependent RNA polymerase 6-like isoform X2 [Solanum
            tuberosum]
          Length = 1198

 Score = 1749 bits (4529), Expect = 0.0
 Identities = 844/1198 (70%), Positives = 1002/1198 (83%)
 Frame = +1

Query: 307  MGSDRSEMNLIVTQISVGGFDSSVTAKKLLEYFEETIGIVWRCRLKTSSTPLDSYPAYNI 486
            MGS+ SE +L+VTQISVGGF + V AK L E  E+ +G VWRCRLKTSSTP DSYP Y+I
Sbjct: 1    MGSEGSEKDLVVTQISVGGFSNDVNAKMLSECLEDQVGQVWRCRLKTSSTPPDSYPTYDI 60

Query: 487  DVSSVQRKNDYRRVEPHAFVHFXXXXXXXXXXXXXXRGELILGNRSLKVSLGPENPHRMN 666
            DV +V+R N+Y +VEPHAFVHF              R EL L  + LKVSLGPENP  MN
Sbjct: 61   DVENVRRMNNYIKVEPHAFVHFASSESAQNALAAARRDELFLEEKPLKVSLGPENPFNMN 120

Query: 667  ERRRTMRPFKLSNIQIEIGVLVSRDTFLLSWKGPPTGVDFLVDPFNDTCILLFSKDTAFA 846
            +RRRT+ PFK S++ +EIGVLVS D F++ W+GP +GV+FLVDPFN TC +LF++DTAF 
Sbjct: 121  KRRRTIMPFKFSDVGVEIGVLVSNDDFVVGWRGPHSGVNFLVDPFNGTCKILFTRDTAFC 180

Query: 847  FKGEVKCAVIRCNFKVEFKVREINEIKQYKDSSGYIILLQLASSPLVYYRTADDDIEESV 1026
            FKGE K AVI+CNFK+EF +REINEI + KD +  ++LLQL SSPLV+YRTADDDIEESV
Sbjct: 181  FKGEGKHAVIKCNFKIEFLLREINEINECKDFASLVLLLQLTSSPLVFYRTADDDIEESV 240

Query: 1027 PYDLLDDDDPWIRTTDFTASGAIGRCNTYRLSIPPRNGATLKKALAYLKERRVNTHDMRL 1206
             +DLLDDDD WIRTTD T SGAIGR NTYR+SI PRNG +LKKA+ Y +E RV   +   
Sbjct: 241  AFDLLDDDDQWIRTTDITCSGAIGRFNTYRISIRPRNGPSLKKAMNYFRESRVPVVEQGN 300

Query: 1207 GEKLLIKHEPEFGIPLQDHFFCIQYQKDLAFKVLFLVNAIMHKGIINQHQMCNKFFDLLR 1386
             + L ++ EP+FG+ L + FFC Q  + ++FKVLFLVNA++ KGI+NQHQM  +FF LLR
Sbjct: 301  RQMLRVRDEPDFGVSLSEPFFCFQNHEGISFKVLFLVNAVLQKGIVNQHQMTAEFFSLLR 360

Query: 1387 IQPEEVNLAALQHIYSYKRPMYDAPKRLELVQKWLIRNPKLIERPRQLDDIIEVRRLIIT 1566
               E VNLAAL+HI+SYKRP+ DA ++L  VQKWL +NP L+ER  QLDD++EVRRL+IT
Sbjct: 361  KHQEGVNLAALKHIFSYKRPVNDAIQKLASVQKWLFKNPNLLERTGQLDDVVEVRRLVIT 420

Query: 1567 PTRAYCVPPEMELSNRVLRHYRNVADRFLRVTFMDEGMQTMNKNVLDYYAASIVRDVTAN 1746
            PT+AYC+PP +ELSNRVLR Y++V+DRFLRVTFMDEGM+ +N+NVL YYAA+IVR++T++
Sbjct: 421  PTKAYCLPPTVELSNRVLRKYKHVSDRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSS 480

Query: 1747 SKLQRTTMFQRVKSILSLGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDRDIGVANVKSWM 1926
            S  QRT +FQRVKSILS GFYLCGR+YSFLAFS+NQLRDRSAWFFAE  +I V N+ +WM
Sbjct: 481  SNPQRTGIFQRVKSILSKGFYLCGRRYSFLAFSANQLRDRSAWFFAEAPEIRVPNIINWM 540

Query: 1927 GRFTNRNVAKCAARMGQCFSSTYATVEVPISEVDWEVPDIERNGYVFSDGIGMISPDLAA 2106
            G+F NRNVAKCAARMGQCFSSTYATVEV  SEV+ E+PDIERNGYVFSDGIGM+S DL+ 
Sbjct: 541  GKFGNRNVAKCAARMGQCFSSTYATVEVLPSEVNSELPDIERNGYVFSDGIGMMSADLSI 600

Query: 2107 EVAERLQLSEDPPCAYQIRFAGCKGVIACWPPKYDGIRLYLRPSMNKFESNHKILEICSW 2286
            EVA +LQLS +PPCAYQIR+AGCKGV+ACWP + DGIRL LRPSM KF+SNH ILEICSW
Sbjct: 601  EVAAKLQLSVNPPCAYQIRYAGCKGVVACWPAEKDGIRLSLRPSMKKFDSNHTILEICSW 660

Query: 2287 ARFQPGFLNRQIITLLSALDVQDNIFWKMQEMMIYKLNQMLVDTDVAFDVLTASCAEQGN 2466
             R QPGFLNRQIITLLS+L+V+D +FW+MQ+ M+ KL+++LVD+DVAFDV+TASCAE GN
Sbjct: 661  TRLQPGFLNRQIITLLSSLEVKDEMFWEMQKEMLSKLDKILVDSDVAFDVITASCAEAGN 720

Query: 2467 TAAIMLTAGFKPKTEPHLQGMLTTIRAAQLGDLRERARIFVSSGRWLMGCLDELAVLEQG 2646
            TAAIML+AGFKP++EPHL+GML +IRAAQLGDLR + R+FV SGRWLMGCLDEL  LEQG
Sbjct: 721  TAAIMLSAGFKPQSEPHLRGMLASIRAAQLGDLRNKTRMFVPSGRWLMGCLDELRKLEQG 780

Query: 2647 QCFIQVSHPSLENCFSNHGSKFSDTRKNLQVIEGYVAVAKNPCLHPGDVRILKAVQAPQL 2826
            QCFIQVS PSLE CF  HG KFS+ +KNLQVI+G V +AKNPCLHPGDVRIL+AV  P L
Sbjct: 781  QCFIQVSSPSLETCFVKHGPKFSEIKKNLQVIKGLVVIAKNPCLHPGDVRILEAVDVPGL 840

Query: 2827 QHLYDCIVFPQKGDRPHTNEASGSDLDGDLYFVTWDEKLIPPSQKSWPPMDYSPAEIKSL 3006
             HLYDC+VFPQKGDRPH+NEASGSDLDGDLYFVTWDE LIPPS+KSW PMDY+PAE K L
Sbjct: 841  HHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWMPMDYAPAEAKQL 900

Query: 3007 PREVKHTDIIEFFTKNMVTESLGAICNAHVVHADLSDKGALDDKCIKLAELAATAVDFPK 3186
             R+V+HTDII+FF+KNMV ESLG ICNAHVVHADLS+ GALD+KC+KLAELAA AVDFPK
Sbjct: 901  GRQVQHTDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFPK 960

Query: 3187 TGKIVTMPAEYKPKMYPDFMGKEEFQTYRSKKILGKLYRQVKDACDEEKVDTSGLAFVAK 3366
            TGK+VTMP + KPKMYPDFMGKE FQTY SKKILGKLYRQV D  D E  ++SGL FV K
Sbjct: 961  TGKLVTMPFDLKPKMYPDFMGKEPFQTYESKKILGKLYRQVIDVYDAEGGESSGLEFVPK 1020

Query: 3367 DIPYDKDLEIAGSEAFIEEAWNFKCSYDGQLNGLLGQYKVNNEEEVVTGHIWSMPKYSSK 3546
            DIPYD ++EI G E FI++AWN KCSYDGQLNGLLGQYKVN EEEVVTGHIWSMPKYS+K
Sbjct: 1021 DIPYDTNIEILGYEDFIDDAWNHKCSYDGQLNGLLGQYKVNGEEEVVTGHIWSMPKYSAK 1080

Query: 3547 KLGDLKERLKHAYNNLRKDFRKVFEQMGTDFNLLSDEEKNVLYERKASAWYHVTYHPTWV 3726
            K G+LKERLKHAYN LRK+FR VFEQM  DF++L  +EKN +YERKASAWY VTYHP WV
Sbjct: 1081 KQGELKERLKHAYNTLRKEFRNVFEQMEPDFDMLPVDEKNDMYERKASAWYRVTYHPHWV 1140

Query: 3727 MKSLELQVPEGVGETVMLSFGWIAADYLARIKIRRKGIENANSLKPIDSLRKYVADRI 3900
             +SLELQ+P+ V   VMLSF WIAADY+ARIKIR++G++N++S KPI+ L +Y+ ++I
Sbjct: 1141 TRSLELQLPDAVSNGVMLSFAWIAADYIARIKIRQRGMQNSDSTKPINFLGRYLVNKI 1198


>ref|XP_002308662.1| SILENCING DEFECTIVE 1 family protein [Populus trichocarpa]
            gi|222854638|gb|EEE92185.1| SILENCING DEFECTIVE 1 family
            protein [Populus trichocarpa]
          Length = 1198

 Score = 1741 bits (4509), Expect = 0.0
 Identities = 837/1200 (69%), Positives = 997/1200 (83%), Gaps = 2/1200 (0%)
 Frame = +1

Query: 307  MGSDRSEMNLIVTQISVGGFDSSVTAKKLLEYFEETIGIVWRCRLKTSSTPLDSYPAYNI 486
            M ++ S    +VTQ+S+GGFD  VTAK LLEY E  IG+VWRCRLKTS TP +SYP + I
Sbjct: 1    METEGSAKETVVTQVSLGGFDIHVTAKDLLEYLEREIGLVWRCRLKTSWTPPESYPNFEI 60

Query: 487  -DVSSVQRKNDYRRVEPHAFVHFXXXXXXXXXXXXXXRGELILGNRSLKVSLGPENPHRM 663
             D++ + R  DYRRVEPHAFVHF              R EL L N+ LK SLGPENP  +
Sbjct: 61   TDITKITRTEDYRRVEPHAFVHFALPQSATCAIDAADRCELFLNNKGLKASLGPENPFTL 120

Query: 664  NERRRTMRPFKLSNIQIEIGVLVSRDTFLLSWKGPPTGVDFLVDPFNDTCILLFSKDTAF 843
            N+RRR   PFKLS + +EIG LVSRD F + W+GPPTGVDFLVDPF+ TC   FS++TAF
Sbjct: 121  NQRRRKTTPFKLSGVGVEIGTLVSRDEFFVGWRGPPTGVDFLVDPFDGTCRFCFSRNTAF 180

Query: 844  AFKGEVKCAVIRCNFKVEFKVREINEIKQYKDSSGYIILLQLASSPLVYYRTADDDIEES 1023
            +FK   + AVI+C+FKVEF VR+INEIKQY ++S  ++LLQLAS+P V+YRTADDDIE S
Sbjct: 181  SFKSTAEHAVIKCDFKVEFLVRDINEIKQYTETSCLVLLLQLASAPRVWYRTADDDIEVS 240

Query: 1024 VPYDLLDDDDPWIRTTDFTASGAIGRCNTYRLSIPPRNGATLKKALAYLKERRVNTHDMR 1203
            VP+DLLDDDDPWIRTTDFTASGAIGRC++YR+SIPPR+G  L+KA+ +LKERRV    +R
Sbjct: 241  VPFDLLDDDDPWIRTTDFTASGAIGRCHSYRVSIPPRHGPKLRKAVDFLKERRVQEEYLR 300

Query: 1204 LGEKLLIKHEPEFGIPLQDHFFCIQYQKDLAFKVLFLVNAIMHKGIINQHQMCNKFFDLL 1383
                + I+ EP+FG+P+ D FFCI +++ +AF VLFLVNA+MHKGI NQHQ+ N FFDLL
Sbjct: 301  --RPIRIRDEPDFGMPMTDPFFCIHHKEGIAFDVLFLVNAVMHKGIFNQHQLSNDFFDLL 358

Query: 1384 RIQPEEVNLAALQHIYSYKRPMYDAPKRLELVQKWLIRNPKLIERPRQLDDIIEVRRLII 1563
            R QP EVN+AAL+HIY Y+RP++DA K+L++ Q+WL++NPK  +  ++LDDI E+RRL+I
Sbjct: 359  RNQPTEVNVAALKHIYPYRRPVFDAYKKLKVAQEWLLKNPKFFKNQKKLDDIAEIRRLVI 418

Query: 1564 TPTRAYCVPPEMELSNRVLRHYRNVADRFLRVTFMDEGMQTMNKNVLDYYAASIVRDVTA 1743
            TPT+AYC+PPE+ELSNRVLR Y++VADRFLRVTFMDEG+QTMN N L+Y+AA IVR +T+
Sbjct: 419  TPTKAYCLPPEVELSNRVLRKYKDVADRFLRVTFMDEGLQTMNSNALNYFAAPIVRAITS 478

Query: 1744 NSKLQRTTMFQRVKSILSLGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDRDIGVANVKSW 1923
             S  Q+T +F+RV+SIL+ GFYLCGR+YSFLAFSSNQLRDRSAWFFAEDR+I V  +KSW
Sbjct: 479  YSFPQKTRIFKRVRSILTEGFYLCGRRYSFLAFSSNQLRDRSAWFFAEDRNINVMAIKSW 538

Query: 1924 MGRFTNRNVAKCAARMGQCFSSTYATVEVPISEVDWEVPDIERNGYVFSDGIGMISPDLA 2103
            MG+FTN+N+AKCAARMGQCFSSTYAT+EVP  EV+ ++PDI+RNGY FSDGIGMI+PDLA
Sbjct: 539  MGKFTNKNIAKCAARMGQCFSSTYATIEVPPEEVNSDLPDIKRNGYDFSDGIGMITPDLA 598

Query: 2104 AEVAERLQLSEDPPCAYQIRFAGCKGVIACWPPKYDGIRLYLRPSMNKFESNHKILEICS 2283
             EVAE+L+   DPPCAYQIR+AGCKGV+ACWP + DGIRL LR SMNKF+SNH ILEICS
Sbjct: 599  REVAEKLKFDFDPPCAYQIRYAGCKGVVACWPEQGDGIRLSLRSSMNKFQSNHTILEICS 658

Query: 2284 WARFQPGFLNRQIITLLSALDVQDNIFWKMQEMMIYKLNQMLVDTDVAFDVLTASCAEQG 2463
            W RFQPGFLNRQIITLLSAL+V D +FWKMQE+M+ KLNQMLVD+DVAFDVLTASCAEQG
Sbjct: 659  WTRFQPGFLNRQIITLLSALNVPDAVFWKMQELMVSKLNQMLVDSDVAFDVLTASCAEQG 718

Query: 2464 NTAAIMLTAGFKPKTEPHLQGMLTTIRAAQLGDLRERARIFVSSGRWLMGCLDELAVLEQ 2643
            N AAIML+AGFKP+ EPHL+GMLT +RAAQL  LRE+ARIFV SGRWLMGCLDEL VLEQ
Sbjct: 719  NVAAIMLSAGFKPQKEPHLRGMLTCVRAAQLWGLREKARIFVPSGRWLMGCLDELGVLEQ 778

Query: 2644 GQCFIQVSHPSLENCFSNHGSKFSDTRKNLQVIEGYVAVAKNPCLHPGDVRILKAVQAPQ 2823
            GQCFIQVS+  LENCF  HGSKFS+T+KNLQV++G V +AKNPCLHPGD+RIL+AV AP 
Sbjct: 779  GQCFIQVSNSYLENCFVKHGSKFSETKKNLQVVKGTVVIAKNPCLHPGDIRILEAVDAPG 838

Query: 2824 LQHLYDCIVFPQKGDRPHTNEASGSDLDGDLYFVTWDEKLIPPSQKSWPPMDYSPAEIKS 3003
            L HLYDC+VFPQKG+RPH NEASGSDLDGDLYFVTWDE LIPPS++SW PM Y  AE K 
Sbjct: 839  LHHLYDCLVFPQKGERPHANEASGSDLDGDLYFVTWDENLIPPSKRSWIPMQYDAAEAKQ 898

Query: 3004 LPREVKHTDIIEFFTKNMVTESLGAICNAHVVHADLSDKGALDDKCIKLAELAATAVDFP 3183
            L R V H DI+EFF KNM  E+LGAICNAHVV ADLS+ GALD+KC+ LAELAATAVDFP
Sbjct: 899  LTRPVNHQDIVEFFAKNMANENLGAICNAHVVRADLSEYGALDEKCLTLAELAATAVDFP 958

Query: 3184 KTGKIVTMPAEYKPKMYPDFMGKEEFQTYRSKKILGKLYRQVKDACDEEKVDTSG-LAFV 3360
            KTGKIV+MP++ KPK+YPDFMGKEE Q+Y+SKKILG+LYRQ+KDA D++ V  S  L FV
Sbjct: 959  KTGKIVSMPSDLKPKIYPDFMGKEEHQSYKSKKILGRLYRQIKDAYDDDDVAASSELNFV 1018

Query: 3361 AKDIPYDKDLEIAGSEAFIEEAWNFKCSYDGQLNGLLGQYKVNNEEEVVTGHIWSMPKYS 3540
              DIPYD DLE+ G+  FI +AW+ KCSYDGQLNGLL QYKV  EEEVVTGH+WSMPK S
Sbjct: 1019 RGDIPYDLDLEVLGATDFISDAWDRKCSYDGQLNGLLAQYKVKREEEVVTGHVWSMPKGS 1078

Query: 3541 SKKLGDLKERLKHAYNNLRKDFRKVFEQMGTDFNLLSDEEKNVLYERKASAWYHVTYHPT 3720
            S+K GDLKERLKH+YN L+++FR+VFE+M  DF  L D+EKN+LYERKASAWY VTYHP 
Sbjct: 1079 SRKQGDLKERLKHSYNCLKREFRQVFEKMDLDFGQLDDDEKNMLYERKASAWYQVTYHPH 1138

Query: 3721 WVMKSLELQVPEGVGETVMLSFGWIAADYLARIKIRRKGIENANSLKPIDSLRKYVADRI 3900
            W+ KSLELQ  +G G +VMLSF WIAADYLARIKIR   I N +S KP++SL KY+ADR+
Sbjct: 1139 WIQKSLELQDSDGAGISVMLSFAWIAADYLARIKIRHSRIGNVDSAKPVNSLAKYLADRM 1198


>ref|NP_001266205.1| RNA-dependent RNA polymerase 6 [Solanum lycopersicum]
            gi|397529811|gb|AFO53516.1| RNA-dependent RNA polymerase
            6 [Solanum lycopersicum]
          Length = 1197

 Score = 1733 bits (4489), Expect = 0.0
 Identities = 837/1199 (69%), Positives = 999/1199 (83%), Gaps = 1/1199 (0%)
 Frame = +1

Query: 307  MGSDRSEMNLIVTQISVGGFDSSVTAKKLLEYFEETIGIVWRCRLKTSSTPLDSYPAYNI 486
            MGS+ S+MN++VTQISVGGF + V AK L EY EE +G VWRCRLKTSSTP DSYP Y+I
Sbjct: 1    MGSEDSDMNIVVTQISVGGFSNDVNAKMLSEYLEEQVGQVWRCRLKTSSTPPDSYPTYDI 60

Query: 487  DVSSVQRKNDYRRVEPHAFVHFXXXXXXXXXXXXXXRGELILGNRSLKVSLGPENPHRMN 666
            DV  V+R N+Y +VEPHAFVHF              R EL L  + LKVSLGPEN   MN
Sbjct: 61   DVEKVRRMNNYIKVEPHAFVHFASSESAQNALAAARRDELFLEEKPLKVSLGPENTFNMN 120

Query: 667  ERRRTMRPFKLSNIQIEIGVLVSRDTFLLSWKGPPTGVDFLVDPFNDTCILLFSKDTAFA 846
            ERRRT  P+K S++ +EIGVLVS D F++ W+GP +GV+FLVDPFN  C +LF++DTAF 
Sbjct: 121  ERRRTFMPYKFSDVGVEIGVLVSNDDFVVGWRGPHSGVNFLVDPFNGKCKILFTRDTAFC 180

Query: 847  FKGEVKCAVIRCNFKVEFKVREINEIKQYKDSSGYIILLQLASSPLVYYRTADDDIEESV 1026
            FKGE K AVI+CNFK+EF +REINEI + KD S  ++LLQLASSPLV+YRTADDDIEESV
Sbjct: 181  FKGEGKHAVIKCNFKIEFLLREINEINECKDFSSLVLLLQLASSPLVFYRTADDDIEESV 240

Query: 1027 PYDLLDDDDPWIRTTDFTASGAIGRCNTYRLSIPPRNGATLKKALAYLKERRVNTHDMRL 1206
             +DLLDDDD WIRTTD T SGAIGR NTYR+SI PRNG + KKA+ Y +E RV   +   
Sbjct: 241  AFDLLDDDDQWIRTTDITFSGAIGRFNTYRVSIRPRNGPSFKKAMNYFRESRVPVVEQ-- 298

Query: 1207 GEKLL-IKHEPEFGIPLQDHFFCIQYQKDLAFKVLFLVNAIMHKGIINQHQMCNKFFDLL 1383
            GE++L +++EP+FG  + + FFC Q  + ++FKVLFLVNA++HKGI+NQHQM  +FF LL
Sbjct: 299  GEQMLRVRNEPDFGESVSEPFFCFQNHEGISFKVLFLVNAVLHKGIVNQHQMTAEFFSLL 358

Query: 1384 RIQPEEVNLAALQHIYSYKRPMYDAPKRLELVQKWLIRNPKLIERPRQLDDIIEVRRLII 1563
            R   E VNLAAL+HI+SYKRP+ DA ++L  VQKWL  NP L+ER  QLDD++EVRRL+I
Sbjct: 359  RKHQEGVNLAALKHIFSYKRPVNDAIRKLASVQKWLFNNPNLLERTGQLDDVVEVRRLVI 418

Query: 1564 TPTRAYCVPPEMELSNRVLRHYRNVADRFLRVTFMDEGMQTMNKNVLDYYAASIVRDVTA 1743
            TPT+AYC+PP +ELSNRVLR Y++++DRFLRVTFMDEGM+ +N+N L YYAA+IVR++T+
Sbjct: 419  TPTKAYCLPPTVELSNRVLRKYKHISDRFLRVTFMDEGMRNLNRNALTYYAANIVREITS 478

Query: 1744 NSKLQRTTMFQRVKSILSLGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDRDIGVANVKSW 1923
            +S  QRT +FQRVK I++ GFYLCGR+YSFLAFS+NQLRDRSAWFFAE  +I V ++ +W
Sbjct: 479  SSNPQRTGIFQRVKIIVNKGFYLCGRRYSFLAFSANQLRDRSAWFFAETPEIRVTSIINW 538

Query: 1924 MGRFTNRNVAKCAARMGQCFSSTYATVEVPISEVDWEVPDIERNGYVFSDGIGMISPDLA 2103
            MG+F NRNVAKCAARMGQCFSSTYATVEV  SEV+ E+PDIERNGYVFSDGIGM++ DL+
Sbjct: 539  MGKFGNRNVAKCAARMGQCFSSTYATVEVLPSEVNSELPDIERNGYVFSDGIGMMTADLS 598

Query: 2104 AEVAERLQLSEDPPCAYQIRFAGCKGVIACWPPKYDGIRLYLRPSMNKFESNHKILEICS 2283
             EVA +LQLS +PPCAYQIR+AGCKGV+ACWP + DGIRL LRPSM KF+SNH ILEICS
Sbjct: 599  IEVAAKLQLSVNPPCAYQIRYAGCKGVVACWPAEKDGIRLSLRPSMKKFDSNHTILEICS 658

Query: 2284 WARFQPGFLNRQIITLLSALDVQDNIFWKMQEMMIYKLNQMLVDTDVAFDVLTASCAEQG 2463
            W R QPGFLNRQIITLLS+L+V+D +FW+MQ+ M+ KL+++LVD+DVAFDV+TASCAE G
Sbjct: 659  WTRLQPGFLNRQIITLLSSLEVKDEMFWEMQKEMLSKLDKILVDSDVAFDVITASCAEAG 718

Query: 2464 NTAAIMLTAGFKPKTEPHLQGMLTTIRAAQLGDLRERARIFVSSGRWLMGCLDELAVLEQ 2643
            NTAAIML+AGFKP++EPHL+GML +IRAAQLGDLR + R+FV+SGRWLMGCLDEL  LEQ
Sbjct: 719  NTAAIMLSAGFKPQSEPHLRGMLASIRAAQLGDLRNKTRMFVTSGRWLMGCLDELGELEQ 778

Query: 2644 GQCFIQVSHPSLENCFSNHGSKFSDTRKNLQVIEGYVAVAKNPCLHPGDVRILKAVQAPQ 2823
            GQCFIQVS PSLE CF  HG +FS+ +KNLQV++G V +AKNPCLHPGDVRIL+AV  P 
Sbjct: 779  GQCFIQVSSPSLETCFVKHGPEFSEIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPG 838

Query: 2824 LQHLYDCIVFPQKGDRPHTNEASGSDLDGDLYFVTWDEKLIPPSQKSWPPMDYSPAEIKS 3003
            L HLYDC+VFPQKGDRPH+NEASGSDLDGDLYFVTWDE LIPPS+KSW PM Y+PAE K 
Sbjct: 839  LHHLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWMPMAYAPAEAKQ 898

Query: 3004 LPREVKHTDIIEFFTKNMVTESLGAICNAHVVHADLSDKGALDDKCIKLAELAATAVDFP 3183
            L R+V+HTDII+FF KNMV ESLG ICNAHVVHADLS+ GA+D+KC+KLAELAA AVDFP
Sbjct: 899  LGRQVQHTDIIDFFLKNMVQESLGEICNAHVVHADLSEFGAMDEKCLKLAELAALAVDFP 958

Query: 3184 KTGKIVTMPAEYKPKMYPDFMGKEEFQTYRSKKILGKLYRQVKDACDEEKVDTSGLAFVA 3363
            KTGK+VTMP + KPKMYPDFMGKE FQ+Y SKKILGKLYRQV D  D E  ++SGL +V 
Sbjct: 959  KTGKLVTMPFDLKPKMYPDFMGKEPFQSYESKKILGKLYRQVIDVYDAEGGESSGLEYVP 1018

Query: 3364 KDIPYDKDLEIAGSEAFIEEAWNFKCSYDGQLNGLLGQYKVNNEEEVVTGHIWSMPKYSS 3543
            KDIPYD +LEI G E FI++AWN KCSYDGQLNGLLGQYKVN EEEVVTGHIWSMPKYS+
Sbjct: 1019 KDIPYDTNLEIPGYEDFIDDAWNHKCSYDGQLNGLLGQYKVNGEEEVVTGHIWSMPKYSA 1078

Query: 3544 KKLGDLKERLKHAYNNLRKDFRKVFEQMGTDFNLLSDEEKNVLYERKASAWYHVTYHPTW 3723
            KK G+LKERLKHAYN LRK+FR VFEQM  DF+LL  +EKN +YERKA AWY VTYHP W
Sbjct: 1079 KKQGELKERLKHAYNMLRKEFRNVFEQMEPDFDLLPIDEKNDMYERKAFAWYRVTYHPHW 1138

Query: 3724 VMKSLELQVPEGVGETVMLSFGWIAADYLARIKIRRKGIENANSLKPIDSLRKYVADRI 3900
            V +SLELQ+P+ V   VMLSF WIAADY+ARIKIR++G++N +S KPIDSL +Y+ ++I
Sbjct: 1139 VTRSLELQLPDAVSNGVMLSFAWIAADYIARIKIRQRGMQNFDSTKPIDSLGRYLVNKI 1197


>ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [Vitis vinifera]
          Length = 1197

 Score = 1726 bits (4470), Expect = 0.0
 Identities = 842/1200 (70%), Positives = 1000/1200 (83%), Gaps = 2/1200 (0%)
 Frame = +1

Query: 307  MGSDRSEMNLIVTQISVGGFDSSVTAKKLLEYFEETIGIVWRCRLKTSSTPLDSYPAYNI 486
            M S+ SE +++VTQIS+GGFD  VTA +L  Y E+TIG V RCRLKTSSTP +SYP + I
Sbjct: 1    MESEGSEKDMVVTQISIGGFDQYVTATELTYYLEDTIGSVDRCRLKTSSTPPESYPDFEI 60

Query: 487  -DVSSVQRKNDYRRVEPHAFVHFXXXXXXXXXXXXXXRGELILGNRSLKVSLGPENPHRM 663
             D + ++R  DY++VEPHAFVHF              + EL L  + LKVSLGPE P  +
Sbjct: 61   IDTAKIERTEDYKKVEPHAFVHFVSPEAATWALDAAGKSELFLHGKPLKVSLGPETPFHL 120

Query: 664  NERRRTMRPFKLSNIQIEIGVLVSRDTFLLSWKGPPTGVDFLVDPFNDTCILLFSKDTAF 843
            N+RRRT  PFK  ++++EIG+LVSRD +   W+GP +GVDFLVDPF+ TC  LF+KDTAF
Sbjct: 121  NQRRRTTFPFKFPDVRLEIGILVSRDEYFAGWRGPSSGVDFLVDPFDGTCKFLFTKDTAF 180

Query: 844  AFKGEVKCAVIRCNFKVEFKVREINEIKQYKDSSGYIILLQLASSPLVYYRTADDDIEES 1023
            +FKG  K AVI+CNFKVEF VREINE++Q +D S  I+LLQL+SSP VYYRTADDDIEE+
Sbjct: 181  SFKGMPKHAVIKCNFKVEFLVREINEVRQRRDMSSLILLLQLSSSPFVYYRTADDDIEET 240

Query: 1024 VPYDLLDDDDPWIRTTDFTASGAIGRCNTYRLSIPPRNGATLKKALAYLKERRVNTHDMR 1203
            VP+DLLDDDDPWIRTTDFT SGAIGRCN+YR+SIPPR GA LKKA+ YL+ RRVN  +  
Sbjct: 241  VPFDLLDDDDPWIRTTDFTVSGAIGRCNSYRISIPPRYGAKLKKAMDYLRARRVNVLEDS 300

Query: 1204 LGEKLLIKHEPEFGIPLQDHFFCIQYQKDLAFKVLFLVNAIMHKGIINQHQMCNKFFDLL 1383
               +L ++ EP+FG+P+ D FFCIQ+++ + F+V+FLVNA+MHKGIINQHQ+ +KFFDLL
Sbjct: 301  PKWQLRVRDEPDFGLPMSDPFFCIQHKEGIDFRVMFLVNAVMHKGIINQHQLSDKFFDLL 360

Query: 1384 RIQPEEVNLAALQHIYSYKRPMYDAPKRLELVQKWLIRNPKLIERPRQLDDIIEVRRLII 1563
            R Q +++N+AAL+HI SY+ P++DA +RL+LV KWL++NPKL++ P++LDDI+EVRRL+I
Sbjct: 361  RSQQKDINIAALKHICSYRHPVFDAYQRLKLVHKWLLKNPKLLKSPKELDDIVEVRRLVI 420

Query: 1564 TPTRAYCVPPEMELSNRVLRHYRNVADRFLRVTFMDEGMQTMNKNVLDYYAASIVRDVTA 1743
            TP++AYC+PPE+ELSNRVLR+Y+ V+DRFLRVTFMDEGMQT+N NVL+YY A IV+ +T+
Sbjct: 421  TPSKAYCLPPEVELSNRVLRNYKEVSDRFLRVTFMDEGMQTINANVLNYYVAPIVKVITS 480

Query: 1744 NSKLQRTTMFQRVKSILSLGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDRDIGVANVKSW 1923
            NS  Q+T +F+RVK+IL+ GFYLCGRKYSFLAFSSNQLRDRSAWFFAED+   V  +KSW
Sbjct: 481  NSFPQKTRVFKRVKTILTDGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKKTSVRAIKSW 540

Query: 1924 MGRFTNRNVAKCAARMGQCFSSTYATVEVPISEVDWEVPDIERNGYVFSDGIGMISPDLA 2103
            MG+FTNRNVAKCAARMGQCFSSTYATVEVP  EV  E+PDI+RNGY FSDGIG I PDLA
Sbjct: 541  MGKFTNRNVAKCAARMGQCFSSTYATVEVPSWEVK-ELPDIKRNGYDFSDGIGKIVPDLA 599

Query: 2104 AEVAERLQLSEDPPCAYQIRFAGCKGVIACWPPKYDGIRLYLRPSMNKFESNHKILEICS 2283
             EVAE+L+L E  P AYQIR+AGCKGV+ACWP   DGIRL  RPSMNKF S+H ILEICS
Sbjct: 600  MEVAEKLKL-EGTPSAYQIRYAGCKGVVACWPSDNDGIRLSWRPSMNKFLSDHTILEICS 658

Query: 2284 WARFQPGFLNRQIITLLSALDVQDNIFWKMQEMMIYKLNQMLVDTDVAFDVLTASCAEQG 2463
            W RFQPGFLNRQI+TLLSAL+V D IFWKMQE MI KLNQML DTDVAFDVL ASCAEQG
Sbjct: 659  WTRFQPGFLNRQIVTLLSALNVPDKIFWKMQESMISKLNQMLTDTDVAFDVLIASCAEQG 718

Query: 2464 NTAAIMLTAGFKPKTEPHLQGMLTTIRAAQLGDLRERARIFVSSGRWLMGCLDELAVLEQ 2643
            NTAAIML+AGFKP+TEPHLQGMLT IRAAQ   LRE+ARIFV SGRWLMGCLDEL VLEQ
Sbjct: 719  NTAAIMLSAGFKPQTEPHLQGMLTCIRAAQFWGLREKARIFVPSGRWLMGCLDELGVLEQ 778

Query: 2644 GQCFIQVSHPSLENCFSNHGSKFSDTRKNLQVIEGYVAVAKNPCLHPGDVRILKAVQAPQ 2823
            GQCFIQVS PSLENCF  HGS+FS  +KNL+VI+G VA+AKNPCLHPGDVRIL+AV AP 
Sbjct: 779  GQCFIQVSSPSLENCFLKHGSRFS-AQKNLKVIKGIVAIAKNPCLHPGDVRILEAVDAPG 837

Query: 2824 LQHLYDCIVFPQKGDRPHTNEASGSDLDGDLYFVTWDEKLIPPSQKSWPPMDYSPAEIKS 3003
            L+HL DC+VFPQKGDRPH+NEASGSDLDGDLYFVTW+E LIPPS++SWPPM Y  AE K+
Sbjct: 838  LEHLVDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWEETLIPPSKQSWPPMQYDSAEAKA 897

Query: 3004 LPREVKHTDIIEFFTKNMVTESLGAICNAHVVHADLSDKGALDDKCIKLAELAATAVDFP 3183
            L REV   DII+FFTKNMV E+LGAICNAHVVHAD S+ GALD+ C+ LAE AATAVDFP
Sbjct: 898  LAREVTSLDIIDFFTKNMVNENLGAICNAHVVHADRSEYGALDEACLDLAERAATAVDFP 957

Query: 3184 KTGKIVTMPAEYKPKMYPDFMGKEEFQTYRSKKILGKLYRQVKDACDEEKVDTSGLAFVA 3363
            KTGK+VT+P   KPKMYPDFMGKEEFQTYRS KILGK+YRQ+KDA +E+  ++S   F A
Sbjct: 958  KTGKLVTLPPYLKPKMYPDFMGKEEFQTYRSNKILGKMYRQIKDAYNEDVSESSEQIFGA 1017

Query: 3364 KDIPYDKDLEIAGSEAFIEEAWNFKCSYDGQLNGLLGQYKVNNEEEVVTGHIWSMPKYSS 3543
              +P+D+DL I GS  FI +AW  KCSYDGQLNGLLGQYKV  EEEVVTGH+WSMPKY S
Sbjct: 1018 DKVPFDEDLGIPGSADFINDAWIHKCSYDGQLNGLLGQYKVKREEEVVTGHVWSMPKYKS 1077

Query: 3544 KKLGDLKERLKHAYNNLRKDFRKVFEQMGTDFNLLSDEEKNVLYERKASAWYHVTYHPTW 3723
            +K G+L ERLKHAY++L+K+FR++FE+M +DF+ L+D+EKN LYE+KASAWY VTYHPTW
Sbjct: 1078 RKQGELTERLKHAYSSLKKEFRQIFEKMNSDFDQLTDDEKNRLYEQKASAWYQVTYHPTW 1137

Query: 3724 VMKSLELQVPEGV-GETVMLSFGWIAADYLARIKIRRKGIENANSLKPIDSLRKYVADRI 3900
            V KSLELQ P+ V GE VMLSF WI ADYLARIKIRRKG  N +S KPI+SL +++ DRI
Sbjct: 1138 VKKSLELQNPDEVFGERVMLSFAWITADYLARIKIRRKGTGNVDSSKPINSLARFLVDRI 1197


>ref|XP_002324295.1| SILENCING DEFECTIVE 1 family protein [Populus trichocarpa]
            gi|222865729|gb|EEF02860.1| SILENCING DEFECTIVE 1 family
            protein [Populus trichocarpa]
          Length = 1200

 Score = 1721 bits (4457), Expect = 0.0
 Identities = 821/1200 (68%), Positives = 993/1200 (82%), Gaps = 2/1200 (0%)
 Frame = +1

Query: 307  MGSDRSEMNLIVTQISVGGFDSSVTAKKLLEYFEETIGIVWRCRLKTSSTPLDSYPAYNI 486
            M ++ S    +VTQ+SVGGFD  VTAK LLEY +  IG+VWRCRLKTS TP +SYP + I
Sbjct: 1    MEAEGSAKETVVTQVSVGGFDIHVTAKDLLEYLDRAIGLVWRCRLKTSWTPPESYPNFEI 60

Query: 487  -DVSSVQRKNDYRRVEPHAFVHFXXXXXXXXXXXXXXRGELILGNRSLKVSLGPENPHRM 663
             D++ ++R  DYRRV PHAFVHF              R EL L N++LKVSLGP+NP  +
Sbjct: 61   TDITKIERTEDYRRVVPHAFVHFALPQSATLAMNASGRCELFLNNKALKVSLGPKNPFTL 120

Query: 664  NERRRTMRPFKLSNIQIEIGVLVSRDTFLLSWKGPPTGVDFLVDPFNDTCILLFSKDTAF 843
            N+RRRT  PFKLS++  EIG LVSRD F + W+GPP+GVDFLVDPF+ TC   FS++TAF
Sbjct: 121  NQRRRTTTPFKLSDVGFEIGNLVSRDEFFVGWRGPPSGVDFLVDPFDGTCKFCFSRNTAF 180

Query: 844  AFKGEVKCAVIRCNFKVEFKVREINEIKQYKDSSGYIILLQLASSPLVYYRTADDDIEES 1023
            + K   + AVI+C+FKVEF VR+INEI QY ++S  ++LLQLAS+P V+YRTADDDIE  
Sbjct: 181  SLKSTSEHAVIKCDFKVEFLVRDINEIIQYTETSCLVLLLQLASAPWVWYRTADDDIEAW 240

Query: 1024 VPYDLLDDDDPWIRTTDFTASGAIGRCNTYRLSIPPRNGATLKKALAYLKERRVNT-HDM 1200
            VP+DLLDDDDPWIRTTDFTASGAIGRC++YR+SIPPR+G+ L+KA+ YLKERRV    + 
Sbjct: 241  VPFDLLDDDDPWIRTTDFTASGAIGRCHSYRVSIPPRHGSKLRKAVKYLKERRVQVLQEE 300

Query: 1201 RLGEKLLIKHEPEFGIPLQDHFFCIQYQKDLAFKVLFLVNAIMHKGIINQHQMCNKFFDL 1380
                ++ I  EP+FG+P+ D FFCI +++ +AF+VLFLVNA+MHKGI NQHQ+ N FFDL
Sbjct: 301  NHRRRIRILDEPDFGMPMSDPFFCIHHKEGIAFEVLFLVNAVMHKGIFNQHQLSNDFFDL 360

Query: 1381 LRIQPEEVNLAALQHIYSYKRPMYDAPKRLELVQKWLIRNPKLIERPRQLDDIIEVRRLI 1560
            LR Q  EVN++AL+HI +Y+RP+++A +RL+ VQ+WL++NP L + P+QL D++E+RRL+
Sbjct: 361  LRNQHTEVNVSALKHICTYRRPVFNAYRRLKAVQEWLLKNPNLFKNPKQLGDVVEIRRLV 420

Query: 1561 ITPTRAYCVPPEMELSNRVLRHYRNVADRFLRVTFMDEGMQTMNKNVLDYYAASIVRDVT 1740
            ITPT+AYC+PPE+ELSNRVLR Y++VADRFLRVTFMDEG+Q MN NVL+YY A IVRD+T
Sbjct: 421  ITPTKAYCLPPEVELSNRVLRKYKDVADRFLRVTFMDEGLQRMNSNVLNYYVAPIVRDIT 480

Query: 1741 ANSKLQRTTMFQRVKSILSLGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDRDIGVANVKS 1920
            +NS  Q+T +F+RV+SIL+ GFYLCGR+YSFLAFS+NQLRD+SAWFF+E+R+I V +VKS
Sbjct: 481  SNSFPQKTRIFKRVRSILTEGFYLCGRRYSFLAFSANQLRDQSAWFFSEERNISVLDVKS 540

Query: 1921 WMGRFTNRNVAKCAARMGQCFSSTYATVEVPISEVDWEVPDIERNGYVFSDGIGMISPDL 2100
            WMG+FTNRN+AKCAARMGQCFSSTYAT+EVP  EV+ ++PDIERNGYVFSDGIG+I+PDL
Sbjct: 541  WMGKFTNRNIAKCAARMGQCFSSTYATIEVPPEEVNSDLPDIERNGYVFSDGIGIITPDL 600

Query: 2101 AAEVAERLQLSEDPPCAYQIRFAGCKGVIACWPPKYDGIRLYLRPSMNKFESNHKILEIC 2280
            A EVAE+L+L  DPPCAYQIR+AGCKGV+ACWP K DG+RL LRPSMNKF+SNH  LEIC
Sbjct: 601  AREVAEKLKLDIDPPCAYQIRYAGCKGVVACWPGKGDGVRLSLRPSMNKFQSNHTTLEIC 660

Query: 2281 SWARFQPGFLNRQIITLLSALDVQDNIFWKMQEMMIYKLNQMLVDTDVAFDVLTASCAEQ 2460
            SW RFQPGFLNRQIITLLS L+V D +FWKMQE M+ KLNQM V++DVAFDVLTASCA+Q
Sbjct: 661  SWTRFQPGFLNRQIITLLSTLNVPDAVFWKMQETMVSKLNQMFVNSDVAFDVLTASCADQ 720

Query: 2461 GNTAAIMLTAGFKPKTEPHLQGMLTTIRAAQLGDLRERARIFVSSGRWLMGCLDELAVLE 2640
            GN AAIML+AGFKP  EPHL+GMLT +RAAQL DLRE+ RIFV SGRWLMGCLDEL +LE
Sbjct: 721  GNVAAIMLSAGFKPDREPHLRGMLTCVRAAQLWDLREKTRIFVPSGRWLMGCLDELGMLE 780

Query: 2641 QGQCFIQVSHPSLENCFSNHGSKFSDTRKNLQVIEGYVAVAKNPCLHPGDVRILKAVQAP 2820
            QGQCFIQVS+ SLE CF  HG+KFS+  KNLQVI+G V +AKNPCLHPGDVR+L+AV  P
Sbjct: 781  QGQCFIQVSNSSLEKCFMKHGAKFSEAEKNLQVIKGTVVIAKNPCLHPGDVRVLEAVDVP 840

Query: 2821 QLQHLYDCIVFPQKGDRPHTNEASGSDLDGDLYFVTWDEKLIPPSQKSWPPMDYSPAEIK 3000
             L HLYDC+VFPQKG+RPHTNEASGSDLDGDLYFVTWDE LIPPS++SW PM Y  AE K
Sbjct: 841  GLHHLYDCLVFPQKGERPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWIPMQYDAAEAK 900

Query: 3001 SLPREVKHTDIIEFFTKNMVTESLGAICNAHVVHADLSDKGALDDKCIKLAELAATAVDF 3180
             L R V H DIIEFF KNMV ++LGAICNAHVVHADLS+ GA D  C+ LAELAATAVDF
Sbjct: 901  LLARPVNHQDIIEFFAKNMVNDNLGAICNAHVVHADLSEYGATDKNCLTLAELAATAVDF 960

Query: 3181 PKTGKIVTMPAEYKPKMYPDFMGKEEFQTYRSKKILGKLYRQVKDACDEEKVDTSGLAFV 3360
            PKTGK+V+MP   KPKMYPDFMGKEE+Q+Y+S+KILG+LYRQ+KDA DE+   +S L  V
Sbjct: 961  PKTGKVVSMPPYLKPKMYPDFMGKEEYQSYKSEKILGRLYRQIKDAYDEDVAASSELNLV 1020

Query: 3361 AKDIPYDKDLEIAGSEAFIEEAWNFKCSYDGQLNGLLGQYKVNNEEEVVTGHIWSMPKYS 3540
              DIPYD DLE+ G+  +I +AW+ KCSYDGQLNGLL QYKV  EEEVVTGHIWSMPKYS
Sbjct: 1021 PGDIPYDSDLEVVGASDYISDAWDQKCSYDGQLNGLLSQYKVKREEEVVTGHIWSMPKYS 1080

Query: 3541 SKKLGDLKERLKHAYNNLRKDFRKVFEQMGTDFNLLSDEEKNVLYERKASAWYHVTYHPT 3720
            S+K G+LK+RLKH+YN+L+K+FR++FE+M  +F  L D EKN LYE+KASAWY V YHP 
Sbjct: 1081 SRKQGELKDRLKHSYNSLKKEFRQIFEKMDLEFEQLEDGEKNKLYEQKASAWYQVVYHPH 1140

Query: 3721 WVMKSLELQVPEGVGETVMLSFGWIAADYLARIKIRRKGIENANSLKPIDSLRKYVADRI 3900
            WV KSLELQ P+G G +VMLSF WIAADYLARIKIR +   N +S KP++SL KY+ADR+
Sbjct: 1141 WVKKSLELQDPDGAGTSVMLSFAWIAADYLARIKIRHRETGNVDSAKPVNSLAKYLADRM 1200


>ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
            gi|223545464|gb|EEF46969.1| RNA-dependent RNA polymerase,
            putative [Ricinus communis]
          Length = 1203

 Score = 1701 bits (4406), Expect = 0.0
 Identities = 822/1205 (68%), Positives = 980/1205 (81%), Gaps = 7/1205 (0%)
 Frame = +1

Query: 307  MGSDRSEMNLIVTQISVGGFDSSVTAKKLLEYFEETIGIVWRCRLKTSSTPLDSYPAYNI 486
            M + R E   +VTQ+S GGFD  VTA+ L+ Y +  IG VWRCRLKTS TP +SYP + I
Sbjct: 1    METKRREKETVVTQVSFGGFDKDVTARDLVAYLDNEIGQVWRCRLKTSWTPPESYPNFEI 60

Query: 487  -DVSSVQRKNDYRRVEPHAFVHFXXXXXXXXXXXXXXRGELILGNRSLKVSLGPENPHRM 663
             D + +QR + YRRVEPHAFVHF                EL    R +KVSLGPENP  +
Sbjct: 61   TDTAVIQRVDAYRRVEPHAFVHFASPDSATWAKNAAGHCELFFNGRPVKVSLGPENPFHL 120

Query: 664  NERRRTMRPFKLSNIQIEIGVLVSRDTFLLSWKGPPTGVDFLVDPFNDTCILLFSKDTAF 843
            N+RRRT  PFKLS++ +EIG LVSRD FL+ W+GPP+GVDFLVDPF+  C   F++DTAF
Sbjct: 121  NQRRRTTIPFKLSDVHVEIGTLVSRDEFLVGWRGPPSGVDFLVDPFDGKCKFCFTRDTAF 180

Query: 844  AFKGEVKCAVIRCNFKVEFKVREINEIKQYKDSSGYIILLQLASSPLVYYRTADDDIEES 1023
            +FKG  + AVIRC+FK+EF VR+INEIKQY D+S  +ILLQLAS+P V+YRTADDDIE  
Sbjct: 181  SFKGTTEHAVIRCDFKLEFLVRDINEIKQYTDTSCLVILLQLASAPSVWYRTADDDIEVL 240

Query: 1024 VPYDLLDDDDPWIRTTDFTASGAIGRCNTYRLSIPPRNGATLKKALAYLKERRVNTHDMR 1203
            VP+DLLDDDDPWIRTTDFT SGAIGRCN+YR+SIPPR+GA LK+AL +L+ERRV    +R
Sbjct: 241  VPFDLLDDDDPWIRTTDFTPSGAIGRCNSYRVSIPPRHGAKLKRALNFLRERRVQEDCLR 300

Query: 1204 LGEKLLIKHEPEFGIPLQDHFFCIQYQKDLAFKVLFLVNAIMHKGIINQHQMCNKFFDLL 1383
                L +  EPE+ +P+ D FFCI +++ + F ++FLVNA+MHKGI NQHQ+ + FFDLL
Sbjct: 301  --RPLHVTAEPEYEMPMSDPFFCIHHEEGVDFNLMFLVNAVMHKGIFNQHQLSDSFFDLL 358

Query: 1384 RIQPEEVNLAALQHIYSYKRPMYDAPKRLELVQKWLIRNPKLIERPRQLDDIIEVRRLII 1563
            R QP +VN+AAL+HI SYK P++DA KRL+ VQ+WL++NPKL    +QLDDI+E+RRL I
Sbjct: 359  RNQPLDVNIAALRHICSYKHPVFDAHKRLKAVQQWLLKNPKLFRSSKQLDDIVEIRRLAI 418

Query: 1564 TPTRAYCVPPEMELSNRVLRHYRNVADRFLRVTFMDEGMQTMNKNVLDYYAASIVRDVTA 1743
            TPTRAYC+PPE+ELSNRVLR Y+++AD+FLRVTFMDEG+QTMN N L YY A IVRD+T+
Sbjct: 419  TPTRAYCLPPEVELSNRVLRRYKDIADQFLRVTFMDEGLQTMNANTLTYYCAPIVRDITS 478

Query: 1744 NSKLQRTTMFQRVKSILSLGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDRDIGVANVKSW 1923
            NS  Q+T +F+RVKSIL+ GFYLCGRKYSFLAFSSNQLRDRSAWFFAED    V+ +++W
Sbjct: 479  NSFSQKTRIFKRVKSILTDGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDGKTSVSKIRNW 538

Query: 1924 MGRFTNRNVAKCAARMGQCFSSTYATVEVPISEVDWEVPDIERNGYVFSDGIGMISPDLA 2103
            MG+FTNRN+AKCAARMGQCFSSTYATVEVP +E   ++PDIERN Y+FSDGIGMI+PDLA
Sbjct: 539  MGKFTNRNIAKCAARMGQCFSSTYATVEVPSAEAILDLPDIERNNYIFSDGIGMITPDLA 598

Query: 2104 AEVAERLQLSEDPPCAYQIRFAGCKGVIACWPPKYDGIRLYLRPSMNKFESNHKILEICS 2283
             EVAE+L+L  +PPCAYQIR+AGCKGV+ACWP   DGIRL LR SMNKF SNH  LEICS
Sbjct: 599  KEVAEKLKLEVNPPCAYQIRYAGCKGVVACWPAHIDGIRLSLRVSMNKFHSNHTTLEICS 658

Query: 2284 WARFQPGFLNRQIITLLSALDVQDNIFWKMQEMMIYKLNQMLVDTDVAFDVLTASCAEQG 2463
            W RFQPGFLNRQIITLLS LDV D IFWKMQ +M+ KLNQM +D DVAFDV+TASCAEQG
Sbjct: 659  WTRFQPGFLNRQIITLLSTLDVPDEIFWKMQIVMVSKLNQMFMDADVAFDVVTASCAEQG 718

Query: 2464 NTAAIMLTAGFKPKTEPHLQGMLTTIRAAQLGDLRERARIFVSSGRWLMGCLDELAVLEQ 2643
            NTAAIML+AGF PKTEPHL GMLT IRAAQL  LRE+ RIFV SGRWLMGCLDEL VLE 
Sbjct: 719  NTAAIMLSAGFNPKTEPHLCGMLTCIRAAQLWGLREKTRIFVPSGRWLMGCLDELGVLEH 778

Query: 2644 GQCFIQVSHPSLENCFSNHGSKFSDTRKNLQVIEGYVAVAKNPCLHPGDVRILKAVQAPQ 2823
            GQCFIQVS+PSLE+CF  HGS+FS+++K LQV++G V VAKNPCLHPGD+RIL+AV AP+
Sbjct: 779  GQCFIQVSNPSLESCFWKHGSRFSESKKKLQVVKGTVVVAKNPCLHPGDIRILEAVDAPE 838

Query: 2824 LQHLYDCIVFPQKGDRPHTNEASGSDLDGDLYFVTWDEKLIPPSQKSWPPMDYSPAEIKS 3003
            L HL+DC+VFPQKGDRPHTNEASGSDLDGDLYFVTWDE LIPPS++SW PM Y  AE K 
Sbjct: 839  LHHLHDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWLPMQYDAAEAKQ 898

Query: 3004 LPREVKHTDIIEFFTKNMVTESLGAICNAHVVHADLSDKGALDDKCIKLAELAATAVDFP 3183
            L R V H DII+FF KNMV E+LGAICNAHVVHADLS+ GALD+ CIKLAELAATAVDFP
Sbjct: 899  LNRPVNHQDIIDFFAKNMVNENLGAICNAHVVHADLSEYGALDENCIKLAELAATAVDFP 958

Query: 3184 KTGKIVTMPAEYKPKMYPDFMGKEEFQTYRSKKILGKLYRQVKDAC------DEEKVDTS 3345
            KTGK+VTMP   KPK+YPDFMGKE++Q+Y S KILG+LYRQVKD        D++   +S
Sbjct: 959  KTGKLVTMPPHLKPKLYPDFMGKEDYQSYNSNKILGRLYRQVKDDYNDDDDDDDDAATSS 1018

Query: 3346 GLAFVAKDIPYDKDLEIAGSEAFIEEAWNFKCSYDGQLNGLLGQYKVNNEEEVVTGHIWS 3525
             L  V  DIPYDKDLE++GS  +I +AW+ KCSYDGQL GLL QYKV  EEEVVTGHIWS
Sbjct: 1019 ELNLVRGDIPYDKDLEVSGSSDYILDAWDQKCSYDGQLKGLLAQYKVKREEEVVTGHIWS 1078

Query: 3526 MPKYSSKKLGDLKERLKHAYNNLRKDFRKVFEQMGTDFNLLSDEEKNVLYERKASAWYHV 3705
            MPK +S+K G+LKERLK +Y++L+K+FR+VFE+M +DF  L+++EKN+LYE+KASAWY V
Sbjct: 1079 MPKCNSRKQGELKERLKQSYHSLKKEFRQVFEKMDSDFEQLTEDEKNLLYEQKASAWYQV 1138

Query: 3706 TYHPTWVMKSLELQVPEGVGETVMLSFGWIAADYLARIKIRRKGIENANSLKPIDSLRKY 3885
             YHP WV KS+ELQ P+  G   MLSF WIAADYLARIKIR +G +  ++ KP++SL KY
Sbjct: 1139 AYHPKWVNKSMELQEPDAAGCASMLSFAWIAADYLARIKIRCRGFDGVDTSKPVNSLVKY 1198

Query: 3886 VADRI 3900
            +ADRI
Sbjct: 1199 LADRI 1203


>gb|EOY29490.1| RNA-dependent RNA polymerase 6 [Theobroma cacao]
          Length = 1197

 Score = 1680 bits (4351), Expect = 0.0
 Identities = 808/1199 (67%), Positives = 976/1199 (81%), Gaps = 1/1199 (0%)
 Frame = +1

Query: 307  MGSDRSEMNLIVTQISVGGFDSSVTAKKLLEYFEETIGIVWRCRLKTSSTPLDSYPAYNI 486
            M S  SE + +VTQ+SVGGF   V AK L+EYF+  +G+VWRCRLKTS TP +SYP + I
Sbjct: 1    MESQGSEKDTVVTQVSVGGFGRHVAAKDLMEYFDNEVGVVWRCRLKTSWTPPESYPNFEI 60

Query: 487  -DVSSVQRKNDYRRVEPHAFVHFXXXXXXXXXXXXXXRGELILGNRSLKVSLGPENPHRM 663
             D + +QR +DY++VEPHAFVHF              R EL+  N+ LKVSLGPENP+ +
Sbjct: 61   LDSTVIQRTDDYKKVEPHAFVHFASPLTATWAVDAAGRTELVFNNQLLKVSLGPENPYYL 120

Query: 664  NERRRTMRPFKLSNIQIEIGVLVSRDTFLLSWKGPPTGVDFLVDPFNDTCILLFSKDTAF 843
            N RRR   PFKLS++ ++IG +VSRD F + W+GPP GVDFLVDPF+ TC   FS+DTAF
Sbjct: 121  NRRRRNTTPFKLSDVCLDIGGMVSRDEFFVGWRGPPFGVDFLVDPFDGTCKFCFSRDTAF 180

Query: 844  AFKGEVKCAVIRCNFKVEFKVREINEIKQYKDSSGYIILLQLASSPLVYYRTADDDIEES 1023
            +FKG  + AVI+C+FKVEF VR+INEIKQY + SG ++ LQLASSP V+YRTADD+IEES
Sbjct: 181  SFKGTTEYAVIKCDFKVEFLVRDINEIKQYTEPSGLVVFLQLASSPRVWYRTADDEIEES 240

Query: 1024 VPYDLLDDDDPWIRTTDFTASGAIGRCNTYRLSIPPRNGATLKKALAYLKERRVNTHDMR 1203
            VP+DLLDDDD WIRTTDFT SGAIGRCNTYR+ I PR+GA LKKAL YL+E+RV    +R
Sbjct: 241  VPFDLLDDDDQWIRTTDFTPSGAIGRCNTYRVVIRPRHGAKLKKALDYLREQRVPMDYVR 300

Query: 1204 LGEKLLIKHEPEFGIPLQDHFFCIQYQKDLAFKVLFLVNAIMHKGIINQHQMCNKFFDLL 1383
                L I  EP+FG  + D F+CI Y++ + F+++FLVNA+MHKGI NQHQ+   FF+LL
Sbjct: 301  W--PLRISDEPDFGRSMSDPFYCIDYKEGIPFEIMFLVNAVMHKGIFNQHQLSEDFFNLL 358

Query: 1384 RIQPEEVNLAALQHIYSYKRPMYDAPKRLELVQKWLIRNPKLIERPRQLDDIIEVRRLII 1563
            R QP EVN+AAL+HIYSY+RP++DA KRL+ V  WL+RNP L + P+QLDDI+E+RRL+I
Sbjct: 359  RDQPREVNVAALKHIYSYRRPVFDAYKRLKTVHDWLLRNPILFKSPKQLDDIVEIRRLVI 418

Query: 1564 TPTRAYCVPPEMELSNRVLRHYRNVADRFLRVTFMDEGMQTMNKNVLDYYAASIVRDVTA 1743
            TPT+A+C+ PE+ELSNRVLR Y+ VADRFLRVTFMDEGMQT+N NVL YYAASIVRDVT+
Sbjct: 419  TPTKAHCLLPEVELSNRVLRKYKEVADRFLRVTFMDEGMQTINANVLTYYAASIVRDVTS 478

Query: 1744 NSKLQRTTMFQRVKSILSLGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDRDIGVANVKSW 1923
                Q+T +F+RV+SIL+ GFYLCGRKYSFLAFS+NQLRD SAWFFAED    V  +  W
Sbjct: 479  TFFSQKTGVFKRVRSILTDGFYLCGRKYSFLAFSANQLRDSSAWFFAEDGKTSVLQILRW 538

Query: 1924 MGRFTNRNVAKCAARMGQCFSSTYATVEVPISEVDWEVPDIERNGYVFSDGIGMISPDLA 2103
            MG+FTNRN+AKCAARMGQCFSSTYATVEVP +EV+  +PDIERNGYVFSDGIG I+PDLA
Sbjct: 539  MGKFTNRNIAKCAARMGQCFSSTYATVEVPSTEVNPFLPDIERNGYVFSDGIGKITPDLA 598

Query: 2104 AEVAERLQLSEDPPCAYQIRFAGCKGVIACWPPKYDGIRLYLRPSMNKFESNHKILEICS 2283
             EVA++L+L  +PPCAYQIR+AGCKGV+ACWP + DG+RL LR SMNKF S+H  LEICS
Sbjct: 599  KEVAQKLKLDLNPPCAYQIRYAGCKGVVACWPEEGDGVRLSLRCSMNKFFSDHTTLEICS 658

Query: 2284 WARFQPGFLNRQIITLLSALDVQDNIFWKMQEMMIYKLNQMLVDTDVAFDVLTASCAEQG 2463
            W RFQPGFLNRQIITLLS   V D +FW+MQ  M+ KLN++LVDTDVAF+VLT+SC+EQG
Sbjct: 659  WTRFQPGFLNRQIITLLSTQYVPDEVFWEMQNTMVSKLNKILVDTDVAFEVLTSSCSEQG 718

Query: 2464 NTAAIMLTAGFKPKTEPHLQGMLTTIRAAQLGDLRERARIFVSSGRWLMGCLDELAVLEQ 2643
            N AAIML+AGFKP+TEPHL+G+LT +RA+QL  LRE+ARIFV SGRWLMG LDEL VLEQ
Sbjct: 719  NAAAIMLSAGFKPQTEPHLRGILTCVRASQLCGLREKARIFVPSGRWLMGVLDELGVLEQ 778

Query: 2644 GQCFIQVSHPSLENCFSNHGSKFSDTRKNLQVIEGYVAVAKNPCLHPGDVRILKAVQAPQ 2823
            GQCFIQVS+PS+ENCF  HGS+F++T+KN +VI+G V +AKNPCLHPGD+RIL+AV AP 
Sbjct: 779  GQCFIQVSNPSVENCFLKHGSRFAETKKNFEVIQGLVVIAKNPCLHPGDIRILEAVDAPG 838

Query: 2824 LQHLYDCIVFPQKGDRPHTNEASGSDLDGDLYFVTWDEKLIPPSQKSWPPMDYSPAEIKS 3003
            L HLYDC+VFPQKG+RPHTNEASGSDLDGDLYFVTW++ LIPP +KSWPPM Y P E K 
Sbjct: 839  LHHLYDCLVFPQKGERPHTNEASGSDLDGDLYFVTWEDLLIPPGKKSWPPMQYDPGETKE 898

Query: 3004 LPREVKHTDIIEFFTKNMVTESLGAICNAHVVHADLSDKGALDDKCIKLAELAATAVDFP 3183
            + REV H DII+FF KNMV E LG ICNAHVVHADLS+ GALD+KCI LAELAATAVDFP
Sbjct: 899  IQREVNHKDIIDFFAKNMVNEHLGTICNAHVVHADLSEYGALDEKCIHLAELAATAVDFP 958

Query: 3184 KTGKIVTMPAEYKPKMYPDFMGKEEFQTYRSKKILGKLYRQVKDACDEEKVDTSGLAFVA 3363
            KTGKIV+MPA  KPK+YPDFMGKEE+Q+Y+S+KILG+LYR +KD  DE+  ++S +   +
Sbjct: 959  KTGKIVSMPANLKPKLYPDFMGKEEYQSYKSRKILGRLYRHIKDVYDEDLSESSEINLDS 1018

Query: 3364 KDIPYDKDLEIAGSEAFIEEAWNFKCSYDGQLNGLLGQYKVNNEEEVVTGHIWSMPKYSS 3543
             DI YD DLE+ GS  +I++AW  KCSYD QL GLLGQYKV  EEEVVTGHIWSMPKY+S
Sbjct: 1019 PDINYDTDLEVTGSADYIDDAWVKKCSYDRQLIGLLGQYKVKREEEVVTGHIWSMPKYTS 1078

Query: 3544 KKLGDLKERLKHAYNNLRKDFRKVFEQMGTDFNLLSDEEKNVLYERKASAWYHVTYHPTW 3723
            +KLGDLKE+L H+Y  LRK+FR++FE M ++   L+++E+N LYERKASAWY VTYHP W
Sbjct: 1079 RKLGDLKEKLGHSYGALRKEFRQIFESMDSEIEQLNEDERNELYERKASAWYQVTYHPKW 1138

Query: 3724 VMKSLELQVPEGVGETVMLSFGWIAADYLARIKIRRKGIENANSLKPIDSLRKYVADRI 3900
            V K LELQ  +G    VMLSF WIAADYLARIKIR +G  N +  KP++SL KY+AD+I
Sbjct: 1139 VEKKLELQKSDGADPVVMLSFAWIAADYLARIKIRSQGTGNVDFSKPVNSLVKYLADKI 1197


>gb|EXB88201.1| RNA-dependent RNA polymerase 6 [Morus notabilis]
          Length = 1194

 Score = 1665 bits (4311), Expect = 0.0
 Identities = 804/1200 (67%), Positives = 982/1200 (81%), Gaps = 2/1200 (0%)
 Frame = +1

Query: 307  MGSDRSEMNLIVTQISVGGFDSSVTAKKLLEYFEETIGIVWRCRLKTSSTPLDSYPAY-N 483
            M  + SE + +VTQIS+GGFD  V AK L+++ E  +GIV+RCRLKTS T  +SYP + N
Sbjct: 1    MELEGSEKDTVVTQISIGGFDRHVKAKDLMDFLEYEVGIVYRCRLKTSCTARESYPTFEN 60

Query: 484  IDVSSVQRKNDYRRVEPHAFVHFXXXXXXXXXXXXXXRGELILGNRSLKVSLGPENPHRM 663
            I+  ++    D R+VEPHAFVHF                 L+L N++LKV+LGPE  +RM
Sbjct: 61   INSENIMESIDIRQVEPHAFVHFASPESVNWTLS----NPLMLNNQTLKVTLGPETLYRM 116

Query: 664  NERRRTMRPFKLSNIQIEIGVLVSRDTFLLSWKGPPTGVDFLVDPFNDTCILLFSKDTAF 843
            N+RRRT  P KL+++ +EIG LV RD F ++W+GP  GVDFLVDPF+  C   F++DTAF
Sbjct: 117  NQRRRTTTPIKLADVIVEIGNLVRRDEFFVAWRGPSYGVDFLVDPFDGLCKFCFTRDTAF 176

Query: 844  AFKGEVKCAVIRCNFKVEFKVREINEIKQYKDSSGYIILLQLASSPLVYYRTADDDIEES 1023
            +FK   K A+++C+FKVEF VR+INEIKQY D+S  ++LL LASSP V+YRTADDDIE S
Sbjct: 177  SFKDMAKLAMMKCDFKVEFLVRDINEIKQYTDTSHLVVLLLLASSPRVWYRTADDDIEVS 236

Query: 1024 VPYDLLDDDDPWIRTTDFTASGAIGRCNTYRLSIPPRNGATLKKALAYLKERRVNTHDMR 1203
            VP+DLLDDDDPWIRTTDFT SGAIGRCN+YR+SIPPR+G+ LKKA++YL+ERRV    +R
Sbjct: 237  VPFDLLDDDDPWIRTTDFTPSGAIGRCNSYRVSIPPRHGSKLKKAMSYLRERRVQETPLR 296

Query: 1204 LGEKLLIKHEPEFGIPLQDHFFCIQYQKDLAFKVLFLVNAIMHKGIINQHQMCNKFFDLL 1383
              + L I+ EP+F +P+ D  F +  +  + F+++FL+N I+HKGI NQH + +  FDL 
Sbjct: 297  --KALRIQSEPDFAVPMSDPIFYVHGKHGIPFEIMFLLNVIVHKGIFNQHNISDGLFDLF 354

Query: 1384 RIQPEEVNLAALQHIYSYKRPMYDAPKRLELVQKWLIRNPKLIERPRQLDDIIEVRRLII 1563
            R QP E+NLAAL+HI SYKRP++DA  +L+ VQ+WL+RNPKL++ PRQLDDI EVRRL+I
Sbjct: 355  RNQPREINLAALKHISSYKRPVFDAYAKLKNVQEWLLRNPKLLKIPRQLDDIAEVRRLVI 414

Query: 1564 TPTRAYCVPPEMELSNRVLRHYRNVADRFLRVTFMDEGMQTMNKNVLDYYAASIVRDVTA 1743
            TPTRAYC+PPE+ELSNRVLR Y+ V+DRFLRVTFMDEGMQTMN NVL YY A IV+++T+
Sbjct: 415  TPTRAYCLPPEVELSNRVLRKYKEVSDRFLRVTFMDEGMQTMNLNVLTYYPAPIVKELTS 474

Query: 1744 NSKLQRTTMFQRVKSILSLGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDRDIGVANVKSW 1923
            NS  Q+T +F+RVKS+L+ GFYLCG++YSFLAFSSNQLRDRSAWFFAED  I V  +K W
Sbjct: 475  NSTSQKTKVFKRVKSLLTDGFYLCGQRYSFLAFSSNQLRDRSAWFFAEDGKITVNGIKKW 534

Query: 1924 MGRFTNRNVAKCAARMGQCFSSTYATVEVPISEVDWEVPDIERNGYVFSDGIGMISPDLA 2103
            MGRF NRN+AKCAARMGQCFSSTYATVEVP++EV++++ +IERN YVFSDGIGMI+PDLA
Sbjct: 535  MGRFNNRNIAKCAARMGQCFSSTYATVEVPLTEVNFDLEEIERNTYVFSDGIGMITPDLA 594

Query: 2104 AEVAERLQLSEDPPCAYQIRFAGCKGVIACWPPKYDGIRLYLRPSMNKFESNHKILEICS 2283
             EVAE+L+L  +PP AYQIR+AGCKGV+ACWPPK DGIRL LR SMNKF+S H ILEICS
Sbjct: 595  KEVAEKLKLDINPPSAYQIRYAGCKGVVACWPPKGDGIRLSLRRSMNKFDSKHTILEICS 654

Query: 2284 WARFQPGFLNRQIITLLSALDVQDNIFWKMQEMMIYKLNQMLVDTDVAFDVLTASCAEQG 2463
            W RFQPGFLNRQI+TLLS L+V+D IFWKMQE M++KLNQML D DVAF+VLTASC EQG
Sbjct: 655  WTRFQPGFLNRQIVTLLSTLNVRDEIFWKMQETMLFKLNQMLTDADVAFNVLTASCPEQG 714

Query: 2464 NTAAIMLTAGFKPKTEPHLQGMLTTIRAAQLGDLRERARIFVSSGRWLMGCLDELAVLEQ 2643
            N  AIML+AGFKP++EPHLQGMLT IRAAQL  LRE+ARIFV  GRWLMGCLDEL VLEQ
Sbjct: 715  NVGAIMLSAGFKPQSEPHLQGMLTCIRAAQLWGLREKARIFVPLGRWLMGCLDELGVLEQ 774

Query: 2644 GQCFIQVSHPSLENCFSNHGSKFSDTRKNLQVIEGYVAVAKNPCLHPGDVRILKAVQAPQ 2823
            GQCFIQVS PSLENCFS HGS+FS+T+ NL+VI+G+V +AKNPCLHPGD+RIL+AV  P 
Sbjct: 775  GQCFIQVSTPSLENCFSKHGSRFSETKNNLEVIKGFVVIAKNPCLHPGDIRILEAVDVPG 834

Query: 2824 LQHLYDCIVFPQKGDRPHTNEASGSDLDGDLYFVTWDEKLIPPSQKSWPPMDYSPAEIKS 3003
            L HLYDC+VFPQKGDRPH NEASGSDLDGDLYFVTWDE LIPPS+KSW PM Y PA+ ++
Sbjct: 835  LHHLYDCLVFPQKGDRPHANEASGSDLDGDLYFVTWDENLIPPSKKSWNPMQYDPAKPRT 894

Query: 3004 LPREVKHTDIIEFFTKNMVTESLGAICNAHVVHADLSDKGALDDKCIKLAELAATAVDFP 3183
            LPR+V   DII+FF++NMV ESLGAICNAHVVHADLSD GALD+KC+ LAELAA AVDFP
Sbjct: 895  LPRDVTQKDIIDFFSRNMVNESLGAICNAHVVHADLSDYGALDEKCLSLAELAAIAVDFP 954

Query: 3184 KTGKIVTMPAEYKPKMYPDFMGKEEFQTYRSKKILGKLYRQVKDACDEEKVDTSGLAFVA 3363
            KTG IVTMPA  KPK+YPDFMGKEE+Q+Y+S KI+G+LYRQ+KD   ++   +S L  V+
Sbjct: 955  KTGIIVTMPAHLKPKIYPDFMGKEEYQSYKSTKIMGRLYRQIKDEYSDDVSPSSELNIVS 1014

Query: 3364 KDIPYDKDLEIAGSEAFIEEAWNFKCSYDGQLNGLLGQYKVNNEEEVVTGHIWSMPKYSS 3543
             +IP+D DLE+ G+  F+++AW  KCSYDGQL GL+ QYKV  EEEVVTG IWSMPK++S
Sbjct: 1015 SNIPFDTDLEVPGAADFLDDAWEKKCSYDGQLKGLMIQYKVKREEEVVTGQIWSMPKHNS 1074

Query: 3544 KKLGDLKERLKHAYNNLRKDFRKVFEQMGTDFNLLSDEEKNVLYERKASAWYHVTYHPTW 3723
            +K GDLKERLKH+Y  LRK+FR+VFE++ +DF  L+D+EKNVLYE++ASAWY +TYHP W
Sbjct: 1075 RKEGDLKERLKHSYTGLRKEFRQVFEKVDSDFEQLTDDEKNVLYEKRASAWYQITYHPKW 1134

Query: 3724 VMKSLELQVP-EGVGETVMLSFGWIAADYLARIKIRRKGIENANSLKPIDSLRKYVADRI 3900
            V KS ++    E V   VMLSF WIAADYLARIKIR +G+ +A+S KPI+SL KY+ADRI
Sbjct: 1135 VKKSQDMHDQLEEVKNVVMLSFAWIAADYLARIKIRCRGVGDADSTKPINSLGKYLADRI 1194


>gb|EMJ26639.1| hypothetical protein PRUPE_ppa000422mg [Prunus persica]
          Length = 1196

 Score = 1658 bits (4293), Expect = 0.0
 Identities = 798/1199 (66%), Positives = 974/1199 (81%), Gaps = 1/1199 (0%)
 Frame = +1

Query: 307  MGSDRSEMNLIVTQISVGGFDSSVTAKKLLEYFEETIGIVWRCRLKTSSTPLDSYPAYNI 486
            M  + SE   +VTQ+S GGF     AK L+ Y E+ IG+V+RCRLKTS TP +S+P + I
Sbjct: 1    MEFEGSENGSVVTQVSFGGFQHHARAKDLVTYLEDEIGLVYRCRLKTSWTPPESFPNFEI 60

Query: 487  DVSSVQRKNDYRRVEPHAFVHFXXXXXXXXXXXXXXRGELILGNRSLKVSLGPENPHRMN 666
            + + V+R +DY RVEPHAFVHF              R EL   N  LKVSLGPENP+ +N
Sbjct: 61   NTADVKRTDDYSRVEPHAFVHFVSPDSVTFAMDAAGRCELFFNNEPLKVSLGPENPYFLN 120

Query: 667  ERRRTMRPFKLSNIQIEIGVLVSRDTFLLSWKGPPTGVDFLVDPFNDTCILLFSKDTAFA 846
             RRRT  PFKLS++ +EIG LV +D F  SW+GPP GVDF+VDPF+ TC   F+ DTAF+
Sbjct: 121  RRRRTKTPFKLSDVHVEIGSLVRQDEFFASWRGPPYGVDFIVDPFDGTCKFCFTMDTAFS 180

Query: 847  FKGEVKCAVIRCNFKVEFKVREINEIKQYKDSSGYIILLQLASSPLVYYRTADDDIEESV 1026
            FKG  K AVI+C+FKVEF VREI EIKQY D+S  +ILL+L SSP V YRTADDDI++SV
Sbjct: 181  FKGTKKHAVIKCDFKVEFLVREIAEIKQYTDTSYLVILLRLTSSPWVSYRTADDDIDQSV 240

Query: 1027 PYDLLDDDDPWIRTTDFTASGAIGRCNTYRLSIPPRNGATLKKALAYLKERRVNTHDMRL 1206
            P+DLLDDDDPWIRTTDFT SGAIGRCN+YR+ IPPR+GA LKKA+ YL+ERRV    ++ 
Sbjct: 241  PFDLLDDDDPWIRTTDFTPSGAIGRCNSYRVLIPPRHGAKLKKAMNYLRERRVKEVCIKW 300

Query: 1207 GEKLLIKHEPEFGIPLQDHFFCIQYQKDLAFKVLFLVNAIMHKGIINQHQMCNKFFDLLR 1386
              K  I+ EP+FG+   + FF IQY++ ++F+++FLVNA+MHKG +NQHQ+ + FF LLR
Sbjct: 301  PPK--IQDEPDFGMSNTEPFFSIQYEEGISFEIMFLVNAVMHKGTVNQHQLSDSFFHLLR 358

Query: 1387 IQPEEVNLAALQHIYSYKRPMYDAPKRLELVQKWLIRNPKLIERPRQLDDIIEVRRLIIT 1566
             QP+E+N+AAL+H+ SY+ P++DA +RL++VQ WL++NPKL++ P++LDDI EVRRL+IT
Sbjct: 359  SQPKEINVAALKHLCSYRSPVFDACERLKVVQDWLLKNPKLVKDPKRLDDIAEVRRLVIT 418

Query: 1567 PTRAYCVPPEMELSNRVLRHYRNVADRFLRVTFMDEGMQTMNKNVLDYYAASIVRDVTAN 1746
            PT+AYC+PPE+ELSNRVLR Y+ VADRFLRVTFMDEGMQ +N NVL+YY A IV+++T+N
Sbjct: 419  PTKAYCLPPEVELSNRVLRKYKEVADRFLRVTFMDEGMQKINSNVLNYYVAPIVKEITSN 478

Query: 1747 SKLQRTTMFQRVKSILSLGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDRDIGVANVKSWM 1926
            S LQ+T +F+R ++IL+ GFYLCGRKY+FLAFSSNQLRDRSAWFFAE  +I V  + SWM
Sbjct: 479  SFLQKTNVFKRFRTILNDGFYLCGRKYTFLAFSSNQLRDRSAWFFAECVNISVGKITSWM 538

Query: 1927 GRFTNRNVAKCAARMGQCFSSTYATVEVPISEVDWEVPDIERNGYVFSDGIGMISPDLAA 2106
            G+F N+NVAKCAARMGQCFSSTYATVEV  SEV+ ++PDI+RNGYVFSDGIGMI+PDLA 
Sbjct: 539  GKFNNKNVAKCAARMGQCFSSTYATVEVTSSEVN-DIPDIKRNGYVFSDGIGMITPDLAL 597

Query: 2107 EVAERLQLSEDPPCAYQIRFAGCKGVIACWPPKYDGIRLYLRPSMNKFESNHKILEICSW 2286
            EVAE+L+L  +PPCAYQIRFAGCKGV+ACWP K DG RL LR SMNKFES H  LEICSW
Sbjct: 598  EVAEKLKLDRNPPCAYQIRFAGCKGVVACWPSKGDGFRLSLRTSMNKFESKHTTLEICSW 657

Query: 2287 ARFQPGFLNRQIITLLSALDVQDNIFWKMQEMMIYKLNQMLVDTDVAFDVLTASCAEQGN 2466
             R+QPGFLNRQIITLLS L+V+D IFW+MQE M+ KLNQMLVDTDVAFDVLTASCAEQGN
Sbjct: 658  TRYQPGFLNRQIITLLSTLNVEDEIFWRMQEKMVLKLNQMLVDTDVAFDVLTASCAEQGN 717

Query: 2467 TAAIMLTAGFKPKTEPHLQGMLTTIRAAQLGDLRERARIFVSSGRWLMGCLDELAVLEQG 2646
             AAIML+AGFKP+TEPHL+GMLT I+AAQL  LRE+ARIFV SGRWLMG LDEL VLEQG
Sbjct: 718  AAAIMLSAGFKPQTEPHLRGMLTCIQAAQLWGLREKARIFVHSGRWLMGVLDELGVLEQG 777

Query: 2647 QCFIQVSHPSLENCFSNHGSKFSDTRKNLQVIEGYVAVAKNPCLHPGDVRILKAVQAPQL 2826
            QCF+QVS P LE+CF+ HGS F+   +NLQVI+G+V +AKNPCLHPGD+RIL+AV AP L
Sbjct: 778  QCFVQVSTPLLESCFAKHGSSFAQIERNLQVIKGHVVIAKNPCLHPGDIRILEAVDAPGL 837

Query: 2827 QHLYDCIVFPQKGDRPHTNEASGSDLDGDLYFVTWDEKLIPPSQKSWPPMDYSPAEIKSL 3006
             HLYDC+VFPQKGDRPHT+EASGSDLDGDLYFVTWDE LIPPS+KSW PM Y PAE K  
Sbjct: 838  HHLYDCLVFPQKGDRPHTDEASGSDLDGDLYFVTWDENLIPPSKKSWMPMQYDPAEAKLQ 897

Query: 3007 PREVKHTDIIEFFTKNMVTESLGAICNAHVVHADLSDKGALDDKCIKLAELAATAVDFPK 3186
             R V   DII+FF KNM  E+LG ICNAHVVHAD SD GALD  C+KLAELAA AVDFPK
Sbjct: 898  GRPVTQQDIIDFFVKNMTNENLGPICNAHVVHADRSDYGALDVNCLKLAELAALAVDFPK 957

Query: 3187 TGKIVTMPAEYKPKMYPDFMGKEEFQTYRSKKILGKLYRQVKDACDEEKVDTSGLAFVAK 3366
            TGKIV++P   KP++YPDF+GKE+ Q+Y+S KILG+LYR+V+DA DE+   +S L +   
Sbjct: 958  TGKIVSLPQHLKPRLYPDFLGKEDNQSYKSTKILGRLYRKVRDAYDEDAATSSELHYFPS 1017

Query: 3367 DIPYDKDLEIAGSEAFIEEAWNFKCSYDGQLNGLLGQYKVNNEEEVVTGHIWSMPKYSSK 3546
            DIPYD DLE+ G+  F+ +AW  KCSYDGQL GL+GQYKV  EEE+VTGH+WS+PK +SK
Sbjct: 1018 DIPYDMDLEVPGAADFVFDAWEKKCSYDGQLKGLMGQYKVKREEEIVTGHVWSIPKSNSK 1077

Query: 3547 KLGDLKERLKHAYNNLRKDFRKVFEQMGTDFNLLSDEEKNVLYERKASAWYHVTYHPTWV 3726
            K G+LKERL H+YN L+K+FR++FE + ++   L+D+EKN+L E+KASAWY VTYHP WV
Sbjct: 1078 KQGELKERLSHSYNALKKEFRQMFENLDSNLEALTDDEKNLLCEKKASAWYQVTYHPKWV 1137

Query: 3727 MKSLELQVPEGVGE-TVMLSFGWIAADYLARIKIRRKGIENANSLKPIDSLRKYVADRI 3900
             +S  LQ P+G G+  VMLSF WIAADYLARIKI+  G+E+ +S KPI+SL++Y+ADRI
Sbjct: 1138 KQSPPLQEPDGPGDVVVMLSFAWIAADYLARIKIKCHGVEHIDSTKPINSLKRYLADRI 1196


>ref|XP_006483356.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X1 [Citrus
            sinensis] gi|568859664|ref|XP_006483357.1| PREDICTED:
            RNA-dependent RNA polymerase 6-like isoform X2 [Citrus
            sinensis]
          Length = 1197

 Score = 1650 bits (4273), Expect = 0.0
 Identities = 801/1200 (66%), Positives = 972/1200 (81%), Gaps = 2/1200 (0%)
 Frame = +1

Query: 307  MGSDRSEMNLIVTQISVGGFDSSVTAKKLLEYFEETIGIVWRCRLKTSSTPLDSYPAYNI 486
            M  +  E  L+  Q+S GGFD +V A +L++Y E  +G VWRCRLKTS TP +SYP +++
Sbjct: 1    MEPEGREKLLVDAQVSFGGFDRNVKAAELVKYLENEVGGVWRCRLKTSCTPSESYPDFSV 60

Query: 487  -DVSSVQRKNDYRRVEPHAFVHFXXXXXXXXXXXXXXRGELILGNRSLKVSLGPENPHRM 663
             + + V++ +DY +VEPHAFVHF              R EL L  ++LKVSLGPENP R+
Sbjct: 61   TNTAEVRKTDDYEKVEPHAFVHFAMPTYVTRAVDAAGRTELFLNGQALKVSLGPENPFRL 120

Query: 664  NERRRTMRPFKLSNIQIEIGVLVSRDTFLLSWKGPPTGVDFLVDPFNDTCILLFSKDTAF 843
            N+R RT  PFKL ++ +EIG LVSRD F ++W+GP +G DFLVDPF+ TC   F++D AF
Sbjct: 121  NQRGRTSTPFKLPDVCVEIGTLVSRDEFFVAWRGPASGTDFLVDPFDGTCKFCFTRDIAF 180

Query: 844  AFKGEVKCAVIRCNFKVEFKVREINEIKQYKDSSGYIILLQLASSPLVYYRTADDDIEES 1023
            A K   + AVI+C FKVEF VREIN +KQY + S   ILLQLASSP V+YRTADDDI   
Sbjct: 181  ALKSSTEHAVIKCEFKVEFLVREINLVKQYSEFSCVAILLQLASSPRVWYRTADDDILVL 240

Query: 1024 VPYDLLDDDDPWIRTTDFTASGAIGRCNTYRLSIPPRNGATLKKALAYLKERRVNTHDMR 1203
            VP+D+LDDDDPWIRTTDFT SGAIGRCN+YR+SI  R+   L K + YL ERRV      
Sbjct: 241  VPFDMLDDDDPWIRTTDFTPSGAIGRCNSYRISISSRHRGKLSKVITYLGERRVQVDS-- 298

Query: 1204 LGEKLLIKHEPEFGIPLQDHFFCIQYQKDLAFKVLFLVNAIMHKGIINQHQMCNKFFDLL 1383
            L   + I+ EP+F +P+ D FFCI Y++ ++F+++FLVNA+MHKGIINQHQ+ + FFDLL
Sbjct: 299  LSRPITIREEPDFEVPMSDPFFCIHYEEGISFEIMFLVNAVMHKGIINQHQLSDSFFDLL 358

Query: 1384 RIQPEEVNLAALQHIYSYKRPMYDAPKRLELVQKWLIRNPKLIERPRQLDDIIEVRRLII 1563
            R Q  EVN+AAL+HIYSYK P++DA KRL+LVQ+WL+++P+L + P+Q+DDI+EVRRL+I
Sbjct: 359  RGQSREVNVAALKHIYSYKWPVFDACKRLKLVQEWLLKDPELYKGPKQIDDIVEVRRLVI 418

Query: 1564 TPTRAYCVPPEMELSNRVLRHYRNVADRFLRVTFMDEGMQTMNKNVLDYYAASIVRDVTA 1743
            TPT+AYC+PPE+ELSNRVLR Y+++ADRFLRVTFMDEG+QTMN NVL Y+ A IVRD+T 
Sbjct: 419  TPTKAYCLPPEVELSNRVLRKYKDLADRFLRVTFMDEGLQTMNANVLSYFIAPIVRDITL 478

Query: 1744 NSKLQRTTMFQRVKSILSLGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDRDIGVANVKSW 1923
            NS  Q+T +F+RV+SILS GFYLCGRK+SFLAFSS+QLRD SAWFF+ED    V ++K W
Sbjct: 479  NSFSQKTRVFKRVRSILSGGFYLCGRKFSFLAFSSSQLRDCSAWFFSEDGKTSVLDIKKW 538

Query: 1924 MGRFTNRNVAKCAARMGQCFSSTYATVEVPISEVDWEVPDIERNGYVFSDGIGMISPDLA 2103
            MGRFT++N+AKCAARMGQCFSSTYATVEVP +EVD E+PDI+RNGYVFSDGIG I+PDLA
Sbjct: 539  MGRFTDKNIAKCAARMGQCFSSTYATVEVPPTEVDPELPDIKRNGYVFSDGIGKITPDLA 598

Query: 2104 AEVAERLQLSEDPP-CAYQIRFAGCKGVIACWPPKYDGIRLYLRPSMNKFESNHKILEIC 2280
             EVA++L+L  +PP CAYQIR+AGCKGV+ACWP K DGIR+ LR SMNKF+S+H  LEIC
Sbjct: 599  MEVAQKLKLDVNPPPCAYQIRYAGCKGVVACWPAKGDGIRMSLRESMNKFQSHHTTLEIC 658

Query: 2281 SWARFQPGFLNRQIITLLSALDVQDNIFWKMQEMMIYKLNQMLVDTDVAFDVLTASCAEQ 2460
            SW RFQPGFLNRQIITLLS L+V D +FW MQ+ M+ KLNQMLVD+DVAF+VLTA+CAEQ
Sbjct: 659  SWTRFQPGFLNRQIITLLSTLNVPDEMFWSMQDSMLSKLNQMLVDSDVAFEVLTAACAEQ 718

Query: 2461 GNTAAIMLTAGFKPKTEPHLQGMLTTIRAAQLGDLRERARIFVSSGRWLMGCLDELAVLE 2640
            GNTAAIML+AGF P+TEPHL+GMLT IRAAQL  LRE+ARIFV +GRWLMGCLDEL VLE
Sbjct: 719  GNTAAIMLSAGFNPQTEPHLRGMLTCIRAAQLWGLREKARIFVPAGRWLMGCLDELGVLE 778

Query: 2641 QGQCFIQVSHPSLENCFSNHGSKFSDTRKNLQVIEGYVAVAKNPCLHPGDVRILKAVQAP 2820
             GQCFIQVS P L NCFS HGS+F++T+K LQVI+G+V +AKNPCLHPGD+RIL+AV  P
Sbjct: 779  GGQCFIQVSEPFLGNCFSKHGSRFAETKK-LQVIKGFVVIAKNPCLHPGDIRILEAVDHP 837

Query: 2821 QLQHLYDCIVFPQKGDRPHTNEASGSDLDGDLYFVTWDEKLIPPSQKSWPPMDYSPAEIK 3000
            +L HLYDC+VFPQKGDRPHTNEASGSDLDGDLYFVTWDE LIPPS+KSWPPM+Y+ AE K
Sbjct: 838  ELHHLYDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKKSWPPMEYNAAEAK 897

Query: 3001 SLPREVKHTDIIEFFTKNMVTESLGAICNAHVVHADLSDKGALDDKCIKLAELAATAVDF 3180
            +L R V   DIIEFF K+MV E+LG ICNAHVVHAD S+ GALD+ CI LAELAATAVDF
Sbjct: 898  TLTRPVDQRDIIEFFAKHMVNENLGTICNAHVVHADHSEYGALDENCILLAELAATAVDF 957

Query: 3181 PKTGKIVTMPAEYKPKMYPDFMGKEEFQTYRSKKILGKLYRQVKDACDEEKVDTSGLAFV 3360
            PKTGKIVTMPA  KPK+YPDFMGKE +Q+Y+S KILG+LYRQ KDA DE+   +S +   
Sbjct: 958  PKTGKIVTMPAHLKPKLYPDFMGKEAYQSYKSNKILGRLYRQSKDAYDEDISVSSEVDIN 1017

Query: 3361 AKDIPYDKDLEIAGSEAFIEEAWNFKCSYDGQLNGLLGQYKVNNEEEVVTGHIWSMPKYS 3540
              DI YD DLE+  S  FI +AWN KCSYDGQLNGLL QYKVN EEE+VTGHIWSMPKY+
Sbjct: 1018 PVDIHYDTDLEVPESVDFIADAWNQKCSYDGQLNGLLEQYKVNREEELVTGHIWSMPKYN 1077

Query: 3541 SKKLGDLKERLKHAYNNLRKDFRKVFEQMGTDFNLLSDEEKNVLYERKASAWYHVTYHPT 3720
            S+K G+LKERLKH+Y+ LRK+FR+VFE+M +D  LLS++EKN L+ERKASAWY VTYHP 
Sbjct: 1078 SRKQGELKERLKHSYSALRKEFRQVFEKMDSDCELLSEDEKNALFERKASAWYQVTYHPE 1137

Query: 3721 WVMKSLELQVPEGVGETVMLSFGWIAADYLARIKIRRKGIENANSLKPIDSLRKYVADRI 3900
            WV KSL+LQ  +     V+LSF WIA DYLARIKIR + + N ++ KP++ L +YVADRI
Sbjct: 1138 WVKKSLDLQEQDSARSVVLLSFAWIANDYLARIKIRCREMANIDTSKPVNYLARYVADRI 1197


>ref|XP_004291459.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Fragaria vesca subsp.
            vesca]
          Length = 1197

 Score = 1648 bits (4268), Expect = 0.0
 Identities = 793/1199 (66%), Positives = 964/1199 (80%), Gaps = 1/1199 (0%)
 Frame = +1

Query: 307  MGSDRSEMNLIVTQISVGGFDSSVTAKKLLEYFEETIGIVWRCRLKTSSTPLDSYPAYNI 486
            M  +  E + +VTQ+S GGF S VTAK+L+ Y E+ IG+V+RCRLKTS TP +S P + I
Sbjct: 1    MELEERENDTVVTQVSFGGFGSHVTAKELVSYLEDEIGLVFRCRLKTSWTPPESVPNFEI 60

Query: 487  -DVSSVQRKNDYRRVEPHAFVHFXXXXXXXXXXXXXXRGELILGNRSLKVSLGPENPHRM 663
             D + ++  +DYR+VEPHAFVHF              R +L   N++LK SLGPEN   M
Sbjct: 61   SDAADIETTDDYRKVEPHAFVHFASPESVTAVMDAVGRCQLFFNNQALKASLGPENLFNM 120

Query: 664  NERRRTMRPFKLSNIQIEIGVLVSRDTFLLSWKGPPTGVDFLVDPFNDTCILLFSKDTAF 843
            N+RRRT  PFKL+++++EIG LV  D F ++WKGP  GVDF+VDPF+ TC   F +DTAF
Sbjct: 121  NKRRRTKIPFKLADVRLEIGSLVRLDEFFVAWKGPDHGVDFVVDPFDGTCKFCFRRDTAF 180

Query: 844  AFKGEVKCAVIRCNFKVEFKVREINEIKQYKDSSGYIILLQLASSPLVYYRTADDDIEES 1023
            +FKG  K AVI C+FK EF+VREI E K Y +   +++LL+L SSP V YRTADDDI++S
Sbjct: 181  SFKGLNKHAVITCDFKAEFQVREIGEFKHYTEPLYHVLLLRLVSSPWVSYRTADDDIDQS 240

Query: 1024 VPYDLLDDDDPWIRTTDFTASGAIGRCNTYRLSIPPRNGATLKKALAYLKERRVNTHDMR 1203
            V +DLLDDDDPWIRTTDFT +GAIGRCN YR+ IPPR+GA LKKA+ YLKERRV   ++ 
Sbjct: 241  VLFDLLDDDDPWIRTTDFTPTGAIGRCNYYRVLIPPRHGAKLKKAMIYLKERRVQ--ELF 298

Query: 1204 LGEKLLIKHEPEFGIPLQDHFFCIQYQKDLAFKVLFLVNAIMHKGIINQHQMCNKFFDLL 1383
            + +   I+ EP FG P+ D  F I YQK+++F +LFLVNA+MHKGI+NQHQ+   FFDLL
Sbjct: 299  IKKPPRIQDEPGFGNPMSDALFSIHYQKNISFDILFLVNAVMHKGILNQHQLSESFFDLL 358

Query: 1384 RIQPEEVNLAALQHIYSYKRPMYDAPKRLELVQKWLIRNPKLIERPRQLDDIIEVRRLII 1563
            R QPEE+N+AAL+H+ SYK P++DA KRL+LVQ+WL+RNPKLI+ P++LDDI EVRRL+I
Sbjct: 359  RNQPEEINVAALKHLCSYKHPVFDASKRLKLVQEWLLRNPKLIKNPKRLDDIAEVRRLVI 418

Query: 1564 TPTRAYCVPPEMELSNRVLRHYRNVADRFLRVTFMDEGMQTMNKNVLDYYAASIVRDVTA 1743
            TPT+AYC+PPE+ELSNRVLR Y+ VADRFLRVTFMDEGMQTMN NV++ Y A IV+++T 
Sbjct: 419  TPTKAYCLPPEVELSNRVLRKYKEVADRFLRVTFMDEGMQTMNSNVMNSYVAPIVKEITE 478

Query: 1744 NSKLQRTTMFQRVKSILSLGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDRDIGVANVKSW 1923
            N+  Q+T ++ R+++IL  GF+LCGRKYSFLAFSSNQLRDRSAWFFAED+ I +  +K+W
Sbjct: 479  NTFPQKTKVYVRIRAILMNGFHLCGRKYSFLAFSSNQLRDRSAWFFAEDKTISIQGIKNW 538

Query: 1924 MGRFTNRNVAKCAARMGQCFSSTYATVEVPISEVDWEVPDIERNGYVFSDGIGMISPDLA 2103
            MGRFTNRNVAKCAARMGQCFSSTYATVEVP ++V+ E+PDIERNGYVFSDGIG I+PDLA
Sbjct: 539  MGRFTNRNVAKCAARMGQCFSSTYATVEVPSTQVNHELPDIERNGYVFSDGIGRITPDLA 598

Query: 2104 AEVAERLQLSEDPPCAYQIRFAGCKGVIACWPPKYDGIRLYLRPSMNKFESNHKILEICS 2283
             EVAE+L+L  DPP AYQIR+ GCKGV+ACWP   DG RL LR SMNKF S+H  LEICS
Sbjct: 599  MEVAEKLKLDRDPPSAYQIRYGGCKGVVACWPSTGDGFRLSLRRSMNKFASDHTTLEICS 658

Query: 2284 WARFQPGFLNRQIITLLSALDVQDNIFWKMQEMMIYKLNQMLVDTDVAFDVLTASCAEQG 2463
            W R QPGFLNRQIITLLSAL+V D IFW MQE M+ KL QMLVDTDVAFDVLTASCAEQG
Sbjct: 659  WTRLQPGFLNRQIITLLSALNVPDEIFWTMQETMVSKLKQMLVDTDVAFDVLTASCAEQG 718

Query: 2464 NTAAIMLTAGFKPKTEPHLQGMLTTIRAAQLGDLRERARIFVSSGRWLMGCLDELAVLEQ 2643
            N+AAIML+AGFKP+TEPHL+GMLT I+AAQL  LRE+ RIFV SGRWLMGCLDEL VLEQ
Sbjct: 719  NSAAIMLSAGFKPQTEPHLRGMLTCIQAAQLWGLREKTRIFVPSGRWLMGCLDELGVLEQ 778

Query: 2644 GQCFIQVSHPSLENCFSNHGSKFSDTRKNLQVIEGYVAVAKNPCLHPGDVRILKAVQAPQ 2823
            GQCF+QVS PSLENCF+ HGS+F  T KNLQVI+G+V VAKNPCLHPGD+RIL+AV AP 
Sbjct: 779  GQCFVQVSTPSLENCFAKHGSRFDQTDKNLQVIKGFVVVAKNPCLHPGDIRILEAVDAPG 838

Query: 2824 LQHLYDCIVFPQKGDRPHTNEASGSDLDGDLYFVTWDEKLIPPSQKSWPPMDYSPAEIKS 3003
            L HL+DC+VFPQKG RPHT+EASGSDLDGDLYFVTWDE LIPP +KSW PM+Y PAE K 
Sbjct: 839  LHHLHDCLVFPQKGHRPHTDEASGSDLDGDLYFVTWDENLIPPRKKSWQPMEYEPAEAKL 898

Query: 3004 LPREVKHTDIIEFFTKNMVTESLGAICNAHVVHADLSDKGALDDKCIKLAELAATAVDFP 3183
              R V   D+IEFF +NMV E+LGAICNAHVVH+D S+ GA D+ C+KLAELAA AVDFP
Sbjct: 899  SGRSVTSQDLIEFFVRNMVNENLGAICNAHVVHSDRSEYGAFDENCLKLAELAAVAVDFP 958

Query: 3184 KTGKIVTMPAEYKPKMYPDFMGKEEFQTYRSKKILGKLYRQVKDACDEEKVDTSGLAFVA 3363
            KTGKIVTMP   KPK+YPDFMGK+++Q+Y+S KILG+LYR++ DA DE+  ++S    V 
Sbjct: 959  KTGKIVTMPPHLKPKLYPDFMGKQDYQSYKSNKILGRLYRKICDAYDEDVANSSEQNHVP 1018

Query: 3364 KDIPYDKDLEIAGSEAFIEEAWNFKCSYDGQLNGLLGQYKVNNEEEVVTGHIWSMPKYSS 3543
             D+ YD DLE+  +  FI +AW  KCSYD QL GL+ QYK+  EEE+VTGH+WSMPKY+S
Sbjct: 1019 SDVKYDMDLEVPKAADFIADAWERKCSYDSQLRGLMTQYKIMREEEIVTGHVWSMPKYTS 1078

Query: 3544 KKLGDLKERLKHAYNNLRKDFRKVFEQMGTDFNLLSDEEKNVLYERKASAWYHVTYHPTW 3723
            +K G+L+ERLKH+Y+ L+K+FR+ FE+M T F  L D++KN  YE+KASAWY VTYHP W
Sbjct: 1079 RKQGELQERLKHSYSALKKEFRQFFEKMDTGFESLIDDQKNSFYEQKASAWYQVTYHPDW 1138

Query: 3724 VMKSLELQVPEGVGETVMLSFGWIAADYLARIKIRRKGIENANSLKPIDSLRKYVADRI 3900
            V KSL+L  P+G G+ VMLSF WIAADYLARIKI+R+ + N +  KPI+ L KY+ADRI
Sbjct: 1139 VKKSLDLHGPDGPGDVVMLSFAWIAADYLARIKIKRREVSNIDPKKPINILTKYLADRI 1197


>ref|XP_003526410.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X1 [Glycine
            max] gi|571459266|ref|XP_006581359.1| PREDICTED:
            RNA-dependent RNA polymerase 6-like isoform X2 [Glycine
            max]
          Length = 1204

 Score = 1640 bits (4247), Expect = 0.0
 Identities = 800/1208 (66%), Positives = 978/1208 (80%), Gaps = 10/1208 (0%)
 Frame = +1

Query: 307  MGSDRSEMNLIVTQISVGGFDSSVTAKKLLEYFEETIGIVWRCRLKTSSTPLDSYPAYNI 486
            M  + SE + +VTQIS+GGF S V A  L+ Y E+ IG+V+RCRLKTS TP +SYP +NI
Sbjct: 1    MDLEGSEKDSVVTQISIGGFGSEVKASDLVNYLEDKIGLVYRCRLKTSWTPPESYPEFNI 60

Query: 487  -DVSSVQRKNDYRRVEPHAFVHFXXXXXXXXXXXXXXRGELILGNRSLKVSLGPENPHRM 663
             D ++++R ++Y++VEPHAFVHF                +L L N+ LKVS GPENP+ +
Sbjct: 61   IDTANIRRTDNYKKVEPHAFVHFASPESVTAALNASGCCDLFLKNQPLKVSCGPENPYFL 120

Query: 664  NERRRTMRPFKLSNIQIEIGVLVSRDTFLLSWKGPPTGVDFLVDPFNDTCILLFSKDTAF 843
            N+RRRT  PFK+S++ +EIG LVS   F +SW+GP  GV FLVDPF+  C   FS+DTAF
Sbjct: 121  NQRRRTTTPFKMSDVLVEIGTLVSPGEFFVSWRGPDKGVKFLVDPFDGMCRFCFSRDTAF 180

Query: 844  AFKGEVKCAVIRCNFKVEFKVREINEIKQYKDSSGYIILLQLASSPLVYYRTADDDIEES 1023
            +FKG  K AVI+C+F+V F VR+INEIK+Y D+S  ++LL LASSP V+YRTADDDIEES
Sbjct: 181  SFKGIEKKAVIKCDFQVGFLVRDINEIKRYNDTSYLVVLLHLASSPWVWYRTADDDIEES 240

Query: 1024 VPYDLLDDDDPWIRTTDFTASGAIGRCNTYRLSIPPRNGATLKKALAYLKERRVNTHDMR 1203
            VP+DLLDDDDPWIRTTDFT SGAIGRCN YR+SIPPR+GA L KA+ YLK +RV   ++ 
Sbjct: 241  VPFDLLDDDDPWIRTTDFTPSGAIGRCNFYRISIPPRHGAKLMKAMLYLKGQRVQMQELA 300

Query: 1204 LGEKLLIKHEPEFGIPLQDHFFCIQYQKDLAFKVLFLVNAIMHKGIINQHQMCNKFFDLL 1383
            L + L   +EP+FG+P+ D FF I +QKD+AF ++FLVNAI+HKGI NQH++ ++FF+LL
Sbjct: 301  LKQTLRTLNEPDFGVPMSDAFFYIHFQKDIAFDIMFLVNAIVHKGIFNQHRLSDRFFELL 360

Query: 1384 RIQPEEVNLAALQHIYSYKRPMYDAPKRLELVQKWLIRNPKLIERPRQLDDIIEVRRLII 1563
            + QP+E+N+AAL+H+ SYKRP++DA KRL++VQ+WL+RNPKL +  +QLDDI+EVRRL+I
Sbjct: 361  KNQPKELNVAALKHLCSYKRPVFDATKRLKIVQEWLLRNPKLYQISKQLDDIVEVRRLVI 420

Query: 1564 TPTRAYCVPPEMELSNRVLRHYRNVADRFLRVTFMDEGMQTMNKNVLDYYAASIVRDVTA 1743
            TP++AYC+PPE+ELSNRVLR +R V+D FLRVTFMDEGMQT+N N L+YY A IV+++T+
Sbjct: 421  TPSKAYCIPPEVELSNRVLRKFREVSDCFLRVTFMDEGMQTINVNALNYYVAPIVKEITS 480

Query: 1744 NSKLQRTTMFQRVKSILSLGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDRDIGVANVKSW 1923
            NS  QRT +++RVK+IL  GFY CGRKYSFLAFSSNQLRDRSAWFFAED+ I   ++++W
Sbjct: 481  NSFSQRTKIYKRVKTILEQGFYFCGRKYSFLAFSSNQLRDRSAWFFAEDK-IRCDDIRNW 539

Query: 1924 MGRFTNRNVAKCAARMGQCFSSTYATVEVPISEVDWEVPDIERNGYVFSDGIGMISPDLA 2103
            MG+F  RNVAKCAARMGQCFSSTYATVEV  +EV+  +PD+ERN Y+FSDGIG+I+ DLA
Sbjct: 540  MGKFNQRNVAKCAARMGQCFSSTYATVEVAANEVNSMLPDVERNNYIFSDGIGVITHDLA 599

Query: 2104 AEVAERLQLSEDPPCAYQIRFAGCKGVIACWPPKYDGIRLYLRPSMNKFESNHKILEICS 2283
             EVAE+L+L ++ P AYQIR+AG KGV+A WP K DG+RL LRPSMNKF+S H ILEIC+
Sbjct: 600  REVAEKLKL-DNVPSAYQIRYAGFKGVVASWPAKGDGVRLSLRPSMNKFQSTHNILEICA 658

Query: 2284 WARFQPGFLNRQIITLLSALDVQDNIFWKMQEMMIYKLNQMLVDTDVAFDVLTASCAEQG 2463
            W RFQPGFLNRQIITLLSAL V D +FW+MQE M+ KLNQMLVD D+AFDVLT SCAE G
Sbjct: 659  WTRFQPGFLNRQIITLLSALGVPDEVFWQMQEAMLLKLNQMLVDADIAFDVLTKSCAEHG 718

Query: 2464 NTAAIMLTAGFKPKTEPHLQGMLTTIRAAQLGDLRERARIFVSSGRWLMGCLDELAVLEQ 2643
            N AAIML+ GF P TEPHL+GMLT+ RAAQL  LRE++RIFVSSGRWLMG LDE  VLEQ
Sbjct: 719  NAAAIMLSCGFSPLTEPHLRGMLTSTRAAQLWGLREKSRIFVSSGRWLMGVLDESGVLEQ 778

Query: 2644 GQCFIQVSHPSLENCFSNHGSKFSDTRKNLQVIEGYVAVAKNPCLHPGDVRILKAVQAPQ 2823
            GQCF+QVS PSLENCFS HGS+FS+T KNL V++G+V +AKNPCLHPGDVR+L+AV AP 
Sbjct: 779  GQCFVQVSTPSLENCFSKHGSRFSET-KNLHVVKGFVIIAKNPCLHPGDVRVLEAVDAPD 837

Query: 2824 LQHLYDCIVFPQKGDRPHTNEASGSDLDGDLYFVTWDEKLIPPSQKSWPPMDYSPAEIKS 3003
            L HL DC+VFPQKGDRPHTNEASGSDLDGDLYFVTWDE LIPPS++SW PM+Y+P E K 
Sbjct: 838  LHHLNDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWIPMEYAPQESKL 897

Query: 3004 LPREVKHTDIIEFFTKNMVTESLGAICNAHVVHADLSDKGALDDKCIKLAELAATAVDFP 3183
              R+V   DIIEFF +NMV E LGAICNAHVVHAD SD GALD+KCI LAELAATAVDFP
Sbjct: 898  KTRQVMTRDIIEFFVRNMVNEHLGAICNAHVVHADSSDYGALDEKCIHLAELAATAVDFP 957

Query: 3184 KTGKIVTMPAEYKPKMYPDFMGKEEFQTYRSKKILGKLYRQVKDACDEEKVDTSGLAFVA 3363
            KTGK+VTMP   KPK+YPDFMGKE  Q+YRSKKILG+LYR++KDA DE+ +D   L FV 
Sbjct: 958  KTGKLVTMPPHLKPKLYPDFMGKERHQSYRSKKILGRLYRRIKDAYDED-IDAPYLNFVT 1016

Query: 3364 KDIPYDKDLEIAGSEAFIEEAWNFKCSYDGQLNGLLGQYKVNNEEEVVTGHIWSMPKYSS 3543
             DIPYDKDLE+ GS  FI +AW  KCSYDGQL+GLLGQYKV  EEEVVTG IWSMPKY+S
Sbjct: 1017 GDIPYDKDLEVPGSADFIADAWEQKCSYDGQLSGLLGQYKVKREEEVVTGQIWSMPKYNS 1076

Query: 3544 KKLGDLKERLKHAYNNLRKDFRKVFEQMGTDFNLLSDEEKNVLYERKASAWYHVTYHPTW 3723
            +K G+LKERLKH+Y+ L+K+FR  FE++ +D   LS+EEKN+ YE+KASAWY VTYHP W
Sbjct: 1077 RKQGELKERLKHSYSALKKEFRHTFEKLNSDVGELSEEEKNLFYEQKASAWYQVTYHPEW 1136

Query: 3724 VMKSLEL-------QVPEGVGETVMLSFGWIAADYLARIKIRRK--GIENANSLKPIDSL 3876
            V KSL+L       Q  + +G TVMLSF WIA DYLAR KIR++     N +S KP+DSL
Sbjct: 1137 VKKSLDLQDKSSENQEADSLGSTVMLSFPWIAVDYLARTKIRQRHQRCGNFDSTKPVDSL 1196

Query: 3877 RKYVADRI 3900
             KY+++R+
Sbjct: 1197 AKYLSERL 1204


>gb|ADG57590.1| RNA-dependent RNA polymerase 6 [Gossypium hirsutum]
            gi|295885034|gb|ADG57592.1| RNA-dependent RNA polymerase
            6 [Gossypium hirsutum]
          Length = 1196

 Score = 1638 bits (4241), Expect = 0.0
 Identities = 792/1199 (66%), Positives = 967/1199 (80%), Gaps = 1/1199 (0%)
 Frame = +1

Query: 307  MGSDRSEMNLIVTQISVGGFDSSVTAKKLLEYFEETIGIVWRCRLKTSSTPLDSYPAYNI 486
            M  + S    +VTQ+SVGGFD  V A+ L++Y E  +G+VWRCRLKTS TP +SYP + I
Sbjct: 1    MELEGSVKETVVTQVSVGGFDRHVKARDLMKYLENEVGLVWRCRLKTSWTPPESYPNFEI 60

Query: 487  -DVSSVQRKNDYRRVEPHAFVHFXXXXXXXXXXXXXXRGELILGNRSLKVSLGPENPHRM 663
             D + +QRK++Y++VEPHAFVHF              R EL   N+ LKVSLGPENP+ +
Sbjct: 61   TDTTVIQRKDNYKKVEPHAFVHFASPQAVTWAVDAAGRTELAFNNQLLKVSLGPENPYYL 120

Query: 664  NERRRTMRPFKLSNIQIEIGVLVSRDTFLLSWKGPPTGVDFLVDPFNDTCILLFSKDTAF 843
            N RRR   PFKL ++ +EIG L S D F++ W+GPP+GV+FLVDPF+ TC   FS+DTAF
Sbjct: 121  NRRRRDTTPFKLPDVSLEIGTLASCDEFIVGWRGPPSGVEFLVDPFDCTCKFCFSRDTAF 180

Query: 844  AFKGEVKCAVIRCNFKVEFKVREINEIKQYKDSSGYIILLQLASSPLVYYRTADDDIEES 1023
            +FKG  + AVI+C+FKVEF VREINE+KQY + +G+++LLQLASSP V+YRTADDD E++
Sbjct: 181  SFKGTNEHAVIKCDFKVEFLVREINEVKQYSEPTGFVVLLQLASSPWVWYRTADDDFEKT 240

Query: 1024 VPYDLLDDDDPWIRTTDFTASGAIGRCNTYRLSIPPRNGATLKKALAYLKERRVNTHDMR 1203
            VP+ LLDDDD WIRTTDFTASGAIGRCNTYR+ + PR+G  LKKA+ YL+ERRV   D+R
Sbjct: 241  VPFGLLDDDDQWIRTTDFTASGAIGRCNTYRVLVRPRHGLKLKKAMDYLRERRVPVEDLR 300

Query: 1204 LGEKLLIKHEPEFGIPLQDHFFCIQYQKDLAFKVLFLVNAIMHKGIINQHQMCNKFFDLL 1383
               +L I+ EP+FG  + DHF+ I Y++ + F+++FLVNA++HKGI NQHQ+   FF LL
Sbjct: 301  --SQLRIRDEPDFGRSMSDHFYYI-YKEGIPFEIMFLVNAVLHKGIFNQHQLSMDFFRLL 357

Query: 1384 RIQPEEVNLAALQHIYSYKRPMYDAPKRLELVQKWLIRNPKLIERPRQLDDIIEVRRLII 1563
            R Q  EVN+AAL+HIYSY+ P+YDA +RL+ V  WL++NPKL + P QLDDI+E+RRL+I
Sbjct: 358  RNQSMEVNVAALKHIYSYRHPVYDAYERLKDVHDWLLKNPKLFKSPPQLDDIVEIRRLVI 417

Query: 1564 TPTRAYCVPPEMELSNRVLRHYRNVADRFLRVTFMDEGMQTMNKNVLDYYAASIVRDVTA 1743
            TPT+AYC+ PE+ELSNRVLR Y++VADRFLRVTFMDEGMQ MN NVL YY A+IVRDVT+
Sbjct: 418  TPTKAYCLLPEVELSNRVLRKYKDVADRFLRVTFMDEGMQIMNANVLTYYNAAIVRDVTS 477

Query: 1744 NSKLQRTTMFQRVKSILSLGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDRDIGVANVKSW 1923
             S  Q+T +F+RVKSIL+ GFYLCGRKYSFLAFS+NQLRDR+AWFFAED  I V  +  W
Sbjct: 478  TSFSQKTGVFKRVKSILTDGFYLCGRKYSFLAFSANQLRDRAAWFFAEDGKINVLQIIGW 537

Query: 1924 MGRFTNRNVAKCAARMGQCFSSTYATVEVPISEVDWEVPDIERNGYVFSDGIGMISPDLA 2103
            MG+FTNRN+AKCAARMGQCFSSTYATVEVP  +V+  +PDI+RNGY FSDGIG I+PDLA
Sbjct: 538  MGKFTNRNIAKCAARMGQCFSSTYATVEVPSGQVNMHLPDIKRNGYDFSDGIGKITPDLA 597

Query: 2104 AEVAERLQLSEDPPCAYQIRFAGCKGVIACWPPKYDGIRLYLRPSMNKFESNHKILEICS 2283
             EVA++L+L  +PPCAYQIR+AGCKGV+ACWP + D IRL LR SM KF S+H  LEICS
Sbjct: 598  MEVAQKLKLDLNPPCAYQIRYAGCKGVVACWPEEGDRIRLSLRSSMIKFFSHHTTLEICS 657

Query: 2284 WARFQPGFLNRQIITLLSALDVQDNIFWKMQEMMIYKLNQMLVDTDVAFDVLTASCAEQG 2463
            W RFQPGFLNRQIITLLS L V D +FW MQ  M+ KL+++LVDTD AF+V+ +SC EQG
Sbjct: 658  WTRFQPGFLNRQIITLLSTLGVPDEVFWGMQNSMVSKLDKVLVDTDAAFEVVISSCGEQG 717

Query: 2464 NTAAIMLTAGFKPKTEPHLQGMLTTIRAAQLGDLRERARIFVSSGRWLMGCLDELAVLEQ 2643
            +T AIML+AGFKP+TEPHL+GMLT +RA+QL  LRE++RIF+ SGRWLMG LDEL VLEQ
Sbjct: 718  HTPAIMLSAGFKPQTEPHLRGMLTCVRASQLWGLREKSRIFIHSGRWLMGVLDELGVLEQ 777

Query: 2644 GQCFIQVSHPSLENCFSNHGSKFSDTRKNLQVIEGYVAVAKNPCLHPGDVRILKAVQAPQ 2823
            GQCFIQVS+PSL+NCF  HGS+F++T+KN +VI+G V +AKNPCLHPGD+RIL+AV AP 
Sbjct: 778  GQCFIQVSNPSLQNCFLKHGSRFAETKKNFEVIKGLVVIAKNPCLHPGDIRILEAVDAPG 837

Query: 2824 LQHLYDCIVFPQKGDRPHTNEASGSDLDGDLYFVTWDEKLIPPSQKSWPPMDYSPAEIKS 3003
            L HLYDC+VFPQKG+RPHTNEASGSDLDGDLYFVTW+E LIPPS+KS  PM Y     + 
Sbjct: 838  LHHLYDCLVFPQKGERPHTNEASGSDLDGDLYFVTWEEALIPPSKKSSQPMQYDLDAPRE 897

Query: 3004 LPREVKHTDIIEFFTKNMVTESLGAICNAHVVHADLSDKGALDDKCIKLAELAATAVDFP 3183
            L R V H DIIEFF+KNMV E LG+ICNAHVVH+DLS+ GA D+KCI LAELAA AVDFP
Sbjct: 898  LNRSVTHKDIIEFFSKNMVNEHLGSICNAHVVHSDLSEHGASDEKCIHLAELAAIAVDFP 957

Query: 3184 KTGKIVTMPAEYKPKMYPDFMGKEEFQTYRSKKILGKLYRQVKDACDEEKVDTSGLAFVA 3363
            KTGKIV+MPA+ KPK+YPDFMGKEEFQ+Y+S KILG+LYR +KDA D++  ++S L F A
Sbjct: 958  KTGKIVSMPAQLKPKLYPDFMGKEEFQSYKSNKILGRLYRYIKDAYDKDVSESSELNFGA 1017

Query: 3364 KDIPYDKDLEIAGSEAFIEEAWNFKCSYDGQLNGLLGQYKVNNEEEVVTGHIWSMPKYSS 3543
             DI YD DLEI GS  +I +AW  KCSYDGQL GLL QYKV  EEEVVTG IWSMPKY+S
Sbjct: 1018 SDINYDADLEITGSADYITDAWAKKCSYDGQLIGLLKQYKVKREEEVVTGQIWSMPKYAS 1077

Query: 3544 KKLGDLKERLKHAYNNLRKDFRKVFEQMGTDFNLLSDEEKNVLYERKASAWYHVTYHPTW 3723
            KKLGDLKE+L H+Y +LRK+FR++FE M ++F  L+++EKN LYERKASAWY VTYHP W
Sbjct: 1078 KKLGDLKEKLGHSYGSLRKEFRQLFENMDSEFEQLNEDEKNKLYERKASAWYQVTYHPEW 1137

Query: 3724 VMKSLELQVPEGVGETVMLSFGWIAADYLARIKIRRKGIENANSLKPIDSLRKYVADRI 3900
            V K LE Q P+G    VMLSF WIAADYLARIK+R +G EN +  KP++SL +Y+ADRI
Sbjct: 1138 VQKKLEFQKPDGDEGVVMLSFAWIAADYLARIKVRHQGTENLDFAKPVNSLVRYLADRI 1196


>ref|XP_003522618.1| PREDICTED: RNA-dependent RNA polymerase 6-like isoform X1 [Glycine
            max] gi|571449461|ref|XP_006578148.1| PREDICTED:
            RNA-dependent RNA polymerase 6-like isoform X2 [Glycine
            max]
          Length = 1204

 Score = 1636 bits (4236), Expect = 0.0
 Identities = 797/1208 (65%), Positives = 975/1208 (80%), Gaps = 10/1208 (0%)
 Frame = +1

Query: 307  MGSDRSEMNLIVTQISVGGFDSSVTAKKLLEYFEETIGIVWRCRLKTSSTPLDSYPAYNI 486
            M  + SE   +VTQIS+GGF S V A  LL Y E+ IG+V+RCRLKTS TP +SYP + I
Sbjct: 1    MDLEGSEKGSVVTQISIGGFGSEVKASDLLNYLEDKIGLVYRCRLKTSWTPPESYPEFKI 60

Query: 487  -DVSSVQRKNDYRRVEPHAFVHFXXXXXXXXXXXXXXRGELILGNRSLKVSLGPENPHRM 663
             D + ++R  DY++VEPHAFVHF                +L L N+ LKVS GP+NP+ +
Sbjct: 61   IDTAKIRRTEDYKKVEPHAFVHFASPESVTAALNASGCCDLFLKNQPLKVSCGPKNPYFL 120

Query: 664  NERRRTMRPFKLSNIQIEIGVLVSRDTFLLSWKGPPTGVDFLVDPFNDTCILLFSKDTAF 843
            N+RRRT  PFK+S++ +EIG LVS   F +SW+GP  GV FLVDPF+  C   FS+DTAF
Sbjct: 121  NQRRRTTTPFKMSDVLVEIGTLVSPGEFFVSWRGPDKGVKFLVDPFDGMCRFCFSRDTAF 180

Query: 844  AFKGEVKCAVIRCNFKVEFKVREINEIKQYKDSSGYIILLQLASSPLVYYRTADDDIEES 1023
            +FKG  K AVI+C+F+V F VR+INEI++Y D+S  ++LL LASSP V+YRTADDDIEES
Sbjct: 181  SFKGIDKKAVIKCDFQVGFLVRDINEIRRYNDTSYLVVLLHLASSPWVWYRTADDDIEES 240

Query: 1024 VPYDLLDDDDPWIRTTDFTASGAIGRCNTYRLSIPPRNGATLKKALAYLKERRVNTHDMR 1203
            VP+DLLDDDDPWIRTTDFT SGAIGRCN YR+SIPPR+GA L KA+ YLK +RV   ++ 
Sbjct: 241  VPFDLLDDDDPWIRTTDFTPSGAIGRCNFYRISIPPRHGAKLMKAMLYLKGQRVQIQELP 300

Query: 1204 LGEKLLIKHEPEFGIPLQDHFFCIQYQKDLAFKVLFLVNAIMHKGIINQHQMCNKFFDLL 1383
            L + L  ++EP+FG+P+ D FF + +QKD+AF ++FLVNAI+HKGI NQH++ ++FF+LL
Sbjct: 301  LKQTLRTQNEPDFGMPMSDAFFYVHFQKDIAFDIMFLVNAIVHKGIFNQHRLSDRFFELL 360

Query: 1384 RIQPEEVNLAALQHIYSYKRPMYDAPKRLELVQKWLIRNPKLIERPRQLDDIIEVRRLII 1563
            R QP+E+N+AAL+H+ SYKRP++DA KRL++VQ+WL+RNPKL +  +QLDDI+EVRRL++
Sbjct: 361  RNQPKELNVAALKHLCSYKRPVFDATKRLKIVQEWLLRNPKLYQISKQLDDIVEVRRLVV 420

Query: 1564 TPTRAYCVPPEMELSNRVLRHYRNVADRFLRVTFMDEGMQTMNKNVLDYYAASIVRDVTA 1743
            TP++AYC+PPE+ELSNRVLR +R V+D FLRVTFMDEGMQT+N N L+YY A IV+++T+
Sbjct: 421  TPSKAYCIPPEVELSNRVLRKFREVSDCFLRVTFMDEGMQTINVNALNYYVAPIVKEITS 480

Query: 1744 NSKLQRTTMFQRVKSILSLGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDRDIGVANVKSW 1923
            NS  Q+T +++RVK+IL  GFY CGRKYSFLAFSSNQLRDRSAWFFAED+ I   ++++W
Sbjct: 481  NSFSQKTKIYKRVKTILEEGFYFCGRKYSFLAFSSNQLRDRSAWFFAEDK-IRCDDIRNW 539

Query: 1924 MGRFTNRNVAKCAARMGQCFSSTYATVEVPISEVDWEVPDIERNGYVFSDGIGMISPDLA 2103
            MG+F  RNVAKCAARMGQCFSSTYATVEV  +EV+  +PD+ERN Y+FSDGIG+I+ DLA
Sbjct: 540  MGKFNQRNVAKCAARMGQCFSSTYATVEVAANEVNSMLPDVERNNYIFSDGIGVITHDLA 599

Query: 2104 AEVAERLQLSEDPPCAYQIRFAGCKGVIACWPPKYDGIRLYLRPSMNKFESNHKILEICS 2283
             EVAE+L+L ++ P AYQIR+AG KGV+A WP K DG+RL LRPSMNKF+S H ILEIC+
Sbjct: 600  REVAEKLKL-DNVPSAYQIRYAGFKGVVASWPAKGDGVRLSLRPSMNKFQSTHNILEICA 658

Query: 2284 WARFQPGFLNRQIITLLSALDVQDNIFWKMQEMMIYKLNQMLVDTDVAFDVLTASCAEQG 2463
            W RFQPGFLNRQIITLLSAL V D IFW+MQE M+ KLNQMLVD D+AFDVLT SCAE G
Sbjct: 659  WTRFQPGFLNRQIITLLSALGVPDEIFWQMQEAMLLKLNQMLVDADIAFDVLTKSCAEHG 718

Query: 2464 NTAAIMLTAGFKPKTEPHLQGMLTTIRAAQLGDLRERARIFVSSGRWLMGCLDELAVLEQ 2643
            N AAIML+ GF P TEPHL+GMLT+ RAAQL  LRE++RIFVSSGRWLMG LDEL VLEQ
Sbjct: 719  NAAAIMLSCGFSPLTEPHLRGMLTSTRAAQLWGLREKSRIFVSSGRWLMGVLDELGVLEQ 778

Query: 2644 GQCFIQVSHPSLENCFSNHGSKFSDTRKNLQVIEGYVAVAKNPCLHPGDVRILKAVQAPQ 2823
            GQCF+QVS PSLENCFS HGS+FS+T KNL V++G+V +AKNPCLHPGDVR+L+AV AP 
Sbjct: 779  GQCFVQVSTPSLENCFSKHGSRFSET-KNLHVVKGFVVIAKNPCLHPGDVRVLEAVDAPD 837

Query: 2824 LQHLYDCIVFPQKGDRPHTNEASGSDLDGDLYFVTWDEKLIPPSQKSWPPMDYSPAEIKS 3003
            L HL DC+VFPQKGDRPHTNEASGSDLDGDLYFVTWDE LIPPS++SW PM+Y+P E K 
Sbjct: 838  LHHLNDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWIPMEYAPQESKL 897

Query: 3004 LPREVKHTDIIEFFTKNMVTESLGAICNAHVVHADLSDKGALDDKCIKLAELAATAVDFP 3183
            L R+V   DIIEFF +NMV E LGAICNAHVVHAD SD GALD+KCI LAELAATAVDFP
Sbjct: 898  LTRQVMTRDIIEFFVRNMVNEHLGAICNAHVVHADSSDYGALDEKCIHLAELAATAVDFP 957

Query: 3184 KTGKIVTMPAEYKPKMYPDFMGKEEFQTYRSKKILGKLYRQVKDACDEEKVDTSGLAFVA 3363
            KTGK+VTMP   KPK+YPDFMGKE  Q+YRS KILG+LYR +KDA DE+ ++   L FV 
Sbjct: 958  KTGKLVTMPPHLKPKLYPDFMGKERHQSYRSNKILGRLYRHIKDAYDED-IEAPYLNFVT 1016

Query: 3364 KDIPYDKDLEIAGSEAFIEEAWNFKCSYDGQLNGLLGQYKVNNEEEVVTGHIWSMPKYSS 3543
             DIPYDKDLE+ GS  FI +AW  KCSYDGQL+GL+GQYKV  EEEVVTG IWSMPKY+S
Sbjct: 1017 GDIPYDKDLEVPGSADFIADAWEQKCSYDGQLSGLIGQYKVKREEEVVTGQIWSMPKYNS 1076

Query: 3544 KKLGDLKERLKHAYNNLRKDFRKVFEQMGTDFNLLSDEEKNVLYERKASAWYHVTYHPTW 3723
            +K G+LKERLKH+Y+ L+K+FR  FE++ +D   LS+EEKN+LYE+KASAWY VTYHP W
Sbjct: 1077 RKQGELKERLKHSYSALKKEFRYTFEKLNSDVGELSEEEKNLLYEQKASAWYQVTYHPEW 1136

Query: 3724 VMKSLEL-------QVPEGVGETVMLSFGWIAADYLARIKIRRKGIENAN--SLKPIDSL 3876
            V KSL+L       Q  + +G TVMLSF WIA DYLAR KIR++   + N  S KP+D L
Sbjct: 1137 VKKSLDLQDKSSENQEADSLGSTVMLSFPWIAVDYLARTKIRQRHQRSGNFDSTKPVDYL 1196

Query: 3877 RKYVADRI 3900
             KY+++R+
Sbjct: 1197 AKYLSERL 1204