BLASTX nr result
ID: Catharanthus22_contig00007905
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus22_contig00007905
(4448 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera] 304 0.0
gb|AAM08562.1|AC092749_15 Putative retroelement [Oryza sativa Ja... 273 e-153
gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsi... 335 e-150
gb|AAP53216.2| retrotransposon protein, putative, Ty1-copia subc... 243 e-143
gb|AAD23690.1| putative retroelement pol polyprotein [Arabidopsi... 305 e-142
gb|AAF19226.1|AC007505_2 Highly similar to Ta1-3 polyprotein [Ar... 310 e-141
emb|CAB75481.1| copia-like polyprotein [Arabidopsis thaliana] 309 e-137
emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis] 322 e-132
emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera] 321 e-129
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118... 329 e-127
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-... 327 e-126
emb|CAN81238.1| hypothetical protein VITISV_031073 [Vitis vinifera] 156 e-123
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group] 326 e-123
gb|AFB73912.1| polyprotein [Citrus sinensis] 275 e-123
gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula] 288 e-123
gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula] 285 e-122
gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subc... 319 e-122
gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group] 319 e-122
gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula] 285 e-121
gb|AFB73911.1| polyprotein [Citrus sinensis] 276 e-121
>emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]
Length = 1643
Score = 304 bits (778), Expect(6) = 0.0
Identities = 152/348 (43%), Positives = 220/348 (63%)
Frame = -2
Query: 3805 EVLCVSLSPSCTDVVNLLVLDSGCSFHMTSNKHWFSDFKPLNQGKVFMGNN*VCDIKGIG 3626
+VL VS S S +LD+G S+HM ++ F+ FK N G V +G++ +KG G
Sbjct: 607 DVLTVSTSSSAES----WILDTGASYHMAYSRDLFTTFKEWN-GSVKLGDDGELGVKGSG 661
Query: 3625 NIFIKIHDGVTRKLIEVRYVPNLHRNLISLSYLDSLGLSFKSKNGILLVCKGNLVMLKGF 3446
++ IK++DG+ R L YVP L +NLIS+ LD G +F G+L V KG LV++KG
Sbjct: 662 SVQIKMYDGLVRTL-NAWYVPGLRKNLISVGTLDKNGYTFSGSGGVLRVSKGALVVMKGR 720
Query: 3445 KRETLYILLGKTVCNSTALISKIVPKKTMLWHQRIGHISEKGLYHLQKQNLLCGDKIDSL 3266
+ +Y L+G +V + A+ T LWH+R+GH+SEKGL L KQ LL G + L
Sbjct: 721 LQHGIYTLMGSSVLGTAAVEED---NCTELWHRRLGHMSEKGLSILSKQGLLSGAETGKL 777
Query: 3265 DFCDHCVLGKQHKISFSTSTHKSSAPLDYVHCDLWGLEKVPTYGGNVYLLSIVDDFSRHV 3086
FC+ CV+GKQ ++ FS +H ++ L+Y+H DLWG V ++ G Y ++ +DDFSR V
Sbjct: 778 KFCETCVMGKQRRVKFSMGSHTTNGVLEYIHSDLWGPSPVESHSGCRYYVTFIDDFSRKV 837
Query: 3085 WVFLLKTKDQTFEKFCEWKRLAENQSRNKLITIKTDNGLEFCYRKFSNLCASHGILHHRT 2906
WV+ LK KD+ F KF EWK + E ++ + T++TDNGLEFC + F C GI+ HRT
Sbjct: 838 WVYFLKAKDEVFGKFKEWKTMVEKRTGKVVKTLRTDNGLEFCNKDFDEFCRKEGIVRHRT 897
Query: 2905 VKYNPQQNGVAERMNRTIMDKVRCLMVSLGVPKPFWGEAVSMAVSLID 2762
V++ PQQNGVAERMN+T++ + RC+ + G+ K FW EAV+ A L++
Sbjct: 898 VRHTPQQNGVAERMNQTLVQRARCMRIDAGLSKKFWAEAVNTAAYLVN 945
Score = 199 bits (506), Expect(6) = 0.0
Identities = 101/159 (63%), Positives = 122/159 (76%)
Frame = -2
Query: 1894 IFSPVIKYKMIRIILALVSFYDLNLEQLDVKTAFLHGDLDETIYMCQPLGFEV*GKEHMT 1715
+FSPV+K+K IR++LA+VS ++L L+QLDVKTAFLHG+L+E IYM QP GF K
Sbjct: 1199 VFSPVVKHKSIRVLLAMVSVFNLELDQLDVKTAFLHGNLEEEIYMKQPEGFVDSEKSDHV 1258
Query: 1714 CLLKKSLYGLKQSPRQWSKRFDSFMLNVGFSKSSYDICLYFSGNNVDSVIYLLLYVDDML 1535
C LKKSLYGLKQSPRQW KRFD+FM++ F ++ YD C+YF S IYLLLYVDDML
Sbjct: 1259 CFLKKSLYGLKQSPRQWYKRFDAFMVSHEFMRNQYDSCVYFKTLPDGSFIYLLLYVDDML 1318
Query: 1534 IACKYKAKIDDLKSLLKSEFDMKDLGVASKILGMSIIRD 1418
IA K +A+I+ LK LL SEF+MKDLG A KILGM I RD
Sbjct: 1319 IAAKNRAEINKLKQLLSSEFEMKDLGAAKKILGMEIWRD 1357
Score = 196 bits (497), Expect(6) = 0.0
Identities = 97/211 (45%), Positives = 135/211 (63%)
Frame = -1
Query: 1403 LFLS*KPLLQKIFSKFSMYLCKPVITPLASHFKLSDKTCPKTENEKRDMANIPYRMAIAS 1224
L++S + ++K+ F M KPV TPLA HFK T P T+ E M ++PY + S
Sbjct: 1363 LYVSQQKYIEKLMQAFHMDHSKPVSTPLAQHFKFDHSTLPSTDEEVEYMKSVPYSSVVGS 1422
Query: 1223 VMYSMISTRPDIAFSISLLSRFMSNPGRDHWAALKWLLHYLNGTLGRGLHYYNWSGVFEL 1044
+MY+M+ TRPD+AF++S++SRFMSNPG+ HW A+KW++ YL G+ L Y N L
Sbjct: 1423 LMYAMVCTRPDLAFAVSVVSRFMSNPGKAHWEAVKWIMRYLKGSSSVCLVYGNGDVSSGL 1482
Query: 1043 IGYVDSDFAGDKDGRKSTTSYFFTIAGNCVS*KSQLQPVVALSITEAEYIANMEAIEEAI 864
+G+ DSD GD R+S T Y FT+ G +S ++ LQP VALS TEAEY++ E ++E +
Sbjct: 1483 VGFTDSDHGGDLMKRRSLTCYIFTLFGCAISWRASLQPTVALSTTEAEYMSLTEGVKEGM 1542
Query: 863 WLQKLLNELHVLHSKAIIYTDSQSSLHLCKN 771
WL L L + SK +IY DSQS+L L KN
Sbjct: 1543 WLNGFLGSLGLNLSKPVIYCDSQSALCLAKN 1573
Score = 152 bits (383), Expect(6) = 0.0
Identities = 94/266 (35%), Positives = 142/266 (53%)
Frame = -1
Query: 2714 ANMSNLRVFGCVAFAHQKDGKLDPRSRKGVFRGYPSEVKGYRVWLKGEPGVRIVISRDVI 2535
+N S L++FGC A+AH DGKL+PR+ K +F GY + VKGYR+W + + +ISRDV
Sbjct: 966 SNYSGLKIFGCPAYAHVSDGKLEPRAMKCIFLGYATGVKGYRLWCTEDRTPKFIISRDVT 1025
Query: 2534 FNELYMPFIKDKHISDSQPSAPTSGSIPVEVEVTSEPSLEPSQEPKTNEELVTXXXXXXX 2355
F+E M F + K D ++ T +VE + +E + + E+
Sbjct: 1026 FDESAM-FGQRKEFGDLAGTSKTDLGANQKVEFEVDAPMENGVDDTSEEQ---------- 1074
Query: 2354 XXXXPETLEPVLEGFDKEVDHPETQAQALRDYQLVRDRVRRVSKEYSRYGYSYIVSYAFA 2175
PV++ D + A R + +R +R V + + V++A A
Sbjct: 1075 ---------PVIDQNDSQ------SIAAXRPRREIRRPMRYV--DCVSANITNPVAFALA 1117
Query: 2174 VASYVEEKESLCFSDVLESPNRSLWLCAIDEEMSSLNKNKTWILVPKPSKQKLVDCKWNF 1995
VA + +E + + +ES + WL ++D+EM+SL KN+TW LVP P K VDCKW F
Sbjct: 1118 VAEEIGREEPRSYKEAMESKDSKKWLSSMDDEMASLRKNQTWELVPLPEGVKPVDCKWLF 1177
Query: 1994 KIKEPESANEPPRFKARPVAKGFSQV 1917
KIK+ S +EPP++K+R VAK FS V
Sbjct: 1178 KIKDGISEDEPPKYKSRLVAKVFSPV 1203
Score = 28.5 bits (62), Expect(6) = 0.0
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = -3
Query: 768 VYHEWTKQIDVKYYFIREM 712
VYHE TK IDV+ FIR++
Sbjct: 1575 VYHERTKHIDVRLNFIRDV 1593
Score = 23.1 bits (48), Expect(6) = 0.0
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = -3
Query: 2763 TPFTAVNFRTLIELWCG 2713
+P TA++F+T E+W G
Sbjct: 947 SPSTAIDFKTPQEVWSG 963
>gb|AAM08562.1|AC092749_15 Putative retroelement [Oryza sativa Japonica Group]
gi|20087076|gb|AAM10749.1|AC112514_2 Putative
retroelement [Oryza sativa Japonica Group]
Length = 1225
Score = 273 bits (699), Expect(3) = e-153
Identities = 141/361 (39%), Positives = 200/361 (55%), Gaps = 3/361 (0%)
Frame = -2
Query: 3775 CTDVVNLLVLDSGCSFHMTSNKHWFSDFKPLNQGKVFMGNN*VCDIKGIGNIFIKIHDGV 3596
C + +LD+ C++HM SN+ WF+ ++ + G V MG++ C++ G
Sbjct: 293 CAQTSDQWILDTACTYHMCSNRDWFATYEAVQGGTVLMGDDTPCEVAGY----------- 341
Query: 3595 TRKLIEVRYVPNLHRNLISLSYLDSLGLSFKSKNGILLVCKGNLVMLKG-FKRETLYILL 3419
+ +GIL V KG+LV++K K LY L
Sbjct: 342 ----------------------------KYSGGDGILKVTKGSLVVMKADIKSANLYHLR 373
Query: 3418 GKTVCNSTALISKIVPKK--TMLWHQRIGHISEKGLYHLQKQNLLCGDKIDSLDFCDHCV 3245
G T+ + A +S + T LWH R+GH+SE GL L K+ LL G I L FC+HC+
Sbjct: 374 GTTILGNVAAVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRGLLDGQSIKKLKFCEHCI 433
Query: 3244 LGKQHKISFSTSTHKSSAPLDYVHCDLWGLEKVPTYGGNVYLLSIVDDFSRHVWVFLLKT 3065
GK ++ F+TSTH + LDYVH DLWG + ++GG Y+++IVDD+SR VW + LK
Sbjct: 434 FGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGARYMMTIVDDYSRKVWPYFLKH 493
Query: 3064 KDQTFEKFCEWKRLAENQSRNKLITIKTDNGLEFCYRKFSNLCASHGILHHRTVKYNPQQ 2885
K Q F+ F EWK + E Q+ K+ ++TDNG++FC + F + C S GI+ H TV + PQQ
Sbjct: 494 KYQAFDVFKEWKTMVERQTERKVKILRTDNGMDFCSKIFKSYCKSEGIVRHYTVPHTPQQ 553
Query: 2884 NGVAERMNRTIMDKVRCLMVSLGVPKPFWGEAVSMAVSLIDPFYSRKL*DSYRTLVWLTC 2705
NGVAERMNRTI+ K RC++ + G+PK FW EAVS A LI+ S + VW
Sbjct: 554 NGVAERMNRTIISKARCMLSNAGLPKQFWAEAVSTACYLINRSPSYAIDKKTPIKVWSGS 613
Query: 2704 P 2702
P
Sbjct: 614 P 614
Score = 186 bits (471), Expect(3) = e-153
Identities = 97/153 (63%), Positives = 116/153 (75%)
Frame = -2
Query: 1876 KYKMIRIILALVSFYDLNLEQLDVKTAFLHGDLDETIYMCQPLGFEV*GKEHMTCLLKKS 1697
K IR +L++V+ YD LEQ+DVKTAFLHG+L+E IYM QP GF V GKE++ C LKKS
Sbjct: 842 KASSIRTLLSIVAMYDYELEQMDVKTAFLHGELEEDIYMEQPEGFVVPGKENLVCRLKKS 901
Query: 1696 LYGLKQSPRQWSKRFDSFMLNVGFSKSSYDICLYFSGNNVDSVIYLLLYVDDMLIACKYK 1517
LYGLKQSPRQW KRFDSFML+ F +S+YD C+Y + S IYLLLYV+DMLIA K K
Sbjct: 902 LYGLKQSPRQWYKRFDSFMLSQKFRRSNYDSCVYLKVVD-GSAIYLLLYVNDMLIAAKDK 960
Query: 1516 AKIDDLKSLLKSEFDMKDLGVASKILGMSIIRD 1418
+I LK+ L SEF+MKDLG A KILGM I R+
Sbjct: 961 LEIAKLKAQLSSEFEMKDLGAAKKILGMEITRE 993
Score = 134 bits (336), Expect(3) = e-153
Identities = 89/261 (34%), Positives = 136/261 (52%), Gaps = 2/261 (0%)
Frame = -1
Query: 2714 ANMSNLRVFGCVAFAHQKDGKLDPRSRKGVFRGYPSEVKGYRVWLKGEPGVRIVISRDVI 2535
AN S+LRVFGC+A+AH + KL+PR+ K +F GYPS VKGY++W ++VISR+V+
Sbjct: 615 ANYSDLRVFGCIAYAHVDNSKLEPRAIKCIFLGYPSGVKGYKLWCPETK--KVVISRNVV 672
Query: 2534 FNELYMPFIKDKHISDSQPSAPTSGSIPVEVEVTSEPSLEPSQEPKTNEELVTXXXXXXX 2355
F+E M + DK S ++PVE + + + E L++
Sbjct: 673 FHESVM--LHDK----------PSTNVPVESQEKASVQV---------EHLISSGHAPEK 711
Query: 2354 XXXXPETLEPVLEGFDKEVDHPETQAQALRDYQLVRDRVRRVSKEYSRY-GYSYIVSYAF 2178
PV+E D + Q + + +D+ +R K RY + IV+YA
Sbjct: 712 ENVAINLDAPVIEDSDSSI------VQQSPKHSIAKDKPKRNIKPPRRYIEEANIVAYAL 765
Query: 2177 AVASYVE-EKESLCFSDVLESPNRSLWLCAIDEEMSSLNKNKTWILVPKPSKQKLVDCKW 2001
+VA +E E +SD + S + + W+ A+ +EM SL KN TW LV P ++K + CKW
Sbjct: 766 SVAEEIEGNVEPSTYSDAIVSDDCNRWITAMHDEMESLEKNHTWELVKLPKEKKPIRCKW 825
Query: 2000 NFKIKEPESANEPPRFKARPV 1938
FK KE S ++ R+KA +
Sbjct: 826 IFKRKEGMSPSDEARYKASSI 846
Score = 98.2 bits (243), Expect(2) = 1e-19
Identities = 64/174 (36%), Positives = 85/174 (48%)
Frame = -1
Query: 1289 CPKTENEKRDMANIPYRMAIASVMYSMISTRPDIAFSISLLSRFMSNPGRDHWAALKWLL 1110
CP+++ + M+ +PY A+ S+MY+M D
Sbjct: 1007 CPQSDYDIEYMSRVPYSSAVGSLMYAMFGRSRD--------------------------- 1039
Query: 1109 HYLNGTLGRGLHYYNWSGVFELIGYVDSDFAGDKDGRKSTTSYFFTIAGNCVS*KSQLQP 930
L+GYVDSDFAGD D R+S T Y FTI G VS K+ LQ
Sbjct: 1040 --------------------GLVGYVDSDFAGDLDRRRSLTGYVFTIGGCAVSWKASLQA 1079
Query: 929 VVALSITEAEYIANMEAIEEAIWLQKLLNELHVLHSKAIIYTDSQSSLHLCKNQ 768
VALS T+AEY+A EA +EAIWL+ L EL + S I+ DSQS++ L K+Q
Sbjct: 1080 TVALSTTKAEYMAISEACKEAIWLRGLYTELCGVTSCINIFCDSQSAICLTKDQ 1133
Score = 28.9 bits (63), Expect(2) = 1e-19
Identities = 11/17 (64%), Positives = 15/17 (88%)
Frame = -3
Query: 768 VYHEWTKQIDVKYYFIR 718
++HE TK IDV+Y+FIR
Sbjct: 1134 MFHERTKYIDVRYHFIR 1150
>gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1335
Score = 335 bits (860), Expect(3) = e-150
Identities = 169/336 (50%), Positives = 222/336 (66%), Gaps = 1/336 (0%)
Frame = -2
Query: 3766 VVNLLVLDSGCSFHMTSNKHWFSDFKPLNQGKVFMGNN*VCDIKGIGNIFIKIHDGVTRK 3587
+ N VLD+GCSFHMT K WF DFK L+ G V MGN+ +KGIG+I I+ DG
Sbjct: 281 IANEWVLDTGCSFHMTPRKDWFKDFKELSSGYVKMGNDTYSPVKGIGSIKIRNSDGSQVI 340
Query: 3586 LIEVRYVPNLHRNLISLSYLDSLGLSFKSKNGILLVCKGNLVMLKGFKRETLYILLGKTV 3407
L +VRY+PN+ RNLISL L+ G FKS++GIL + KG +LKG KR+TLYIL G T
Sbjct: 341 LTDVRYMPNMTRNLISLGTLEDRGCWFKSQDGILKIVKGCSTILKGQKRDTLYILDGVTE 400
Query: 3406 CNSTALISKIVPKKTMLWHQRIGHISEKGLYHLQKQNLLCGDKIDSLDFCDHCVLGKQHK 3227
+ S V +T LWH R+GH+S+KG+ L K+ L + I L+FC+ CV GKQH+
Sbjct: 401 -EGESHSSAEVKDETALWHSRLGHMSQKGMEILVKKGCLRREVIKELEFCEDCVYGKQHR 459
Query: 3226 ISFSTSTHKSSAPLDYVHCDLWGLEKVP-TYGGNVYLLSIVDDFSRHVWVFLLKTKDQTF 3050
+SF+ + H + L YVH DLWG P + G + Y +S VDD+SR VW++ L+ KD+ F
Sbjct: 460 VSFAPAQHVTKEKLAYVHSDLWGSPHNPASLGNSQYFISFVDDYSRKVWIYFLRKKDEAF 519
Query: 3049 EKFCEWKRLAENQSRNKLITIKTDNGLEFCYRKFSNLCASHGILHHRTVKYNPQQNGVAE 2870
EKF EWK++ ENQS K+ ++TDNGLE+C F C GI+ H+T Y PQQNG+AE
Sbjct: 520 EKFVEWKKMVENQSDRKVKKLRTDNGLEYCNHYFEKFCKEEGIVRHKTCAYTPQQNGIAE 579
Query: 2869 RMNRTIMDKVRCLMVSLGVPKPFWGEAVSMAVSLID 2762
R+NRTIMDKVR ++ G+ K FW EA S AV LI+
Sbjct: 580 RLNRTIMDKVRSMLSRSGMEKKFWAEAASTAVYLIN 615
Score = 153 bits (386), Expect(3) = e-150
Identities = 102/274 (37%), Positives = 140/274 (51%), Gaps = 4/274 (1%)
Frame = -1
Query: 2711 NMSNLRVFGCVAFAHQKDGKLDPRSRKGVFRGYPSEVKGYRVWLKGEPGVRIVISRDVIF 2532
++S+LR FGC+A+ H GKL+PRS+KG+F YP VKGY+VW+ + + VISR+VIF
Sbjct: 637 DLSSLRKFGCLAYIHADQGKLNPRSKKGIFTSYPEGVKGYKVWVLEDK--KCVISRNVIF 694
Query: 2531 NELYMPFIKDKHISDSQPSAPTSGSIPVEVEVTSEPSLEPSQEPKTNEELVTXXXXXXXX 2352
E M KD DSQ + S + V P + +
Sbjct: 695 REQVM--FKDLK-GDSQNTISESDLEDLRVN----PDMNDQEFTDQGGATQDNSNPSEAT 747
Query: 2351 XXXPETLEPVLEGFDKEVDHPETQA-QALRDYQLVRDRVRRVSKEYSRYGYSYIVSYAFA 2175
L D+E + ++ A + L YQLVRDRVRR K +Y S +V +A+
Sbjct: 748 TSHNPVLNSPTHSQDEESEEEDSDAVEDLSTYQLVRDRVRRTIKANPKYNESNMVGFAY- 806
Query: 2174 VASYVEEK---ESLCFSDVLESPNRSLWLCAIDEEMSSLNKNKTWILVPKPSKQKLVDCK 2004
Y E+ E + + L P+ W A+ EEM S++KN TW LV KP K KL+ C+
Sbjct: 807 ---YSEDDGKPEPKSYQEALLDPDWEKWNAAMKEEMVSMSKNHTWDLVTKPEKVKLIGCR 863
Query: 2003 WNFKIKEPESANEPPRFKARPVAKGFSQVEGIRF 1902
W F K E PRF AR VAKGF+Q EG+ +
Sbjct: 864 WVFTRKAGIPGVEAPRFIARLVAKGFTQKEGVDY 897
Score = 96.3 bits (238), Expect(3) = e-150
Identities = 66/207 (31%), Positives = 111/207 (53%), Gaps = 10/207 (4%)
Frame = -1
Query: 4433 LHLTDNVLREIDEKDNAFEIWTKLERLYLEKSLSNIIYLKEQLFGFKMSGSKTLSENMGD 4254
L++ D VLR+I+ A E W L+RL++ +SL + +Y + + FKM +K + EN+ D
Sbjct: 55 LNVADKVLRKIELCKTAAEAWETLDRLFMIRSLPHRVYTQLSFYTFKMQENKKIDENIDD 114
Query: 4253 LNKIVLELQNVGEKISDENIAVILLNALPDSFNDVKYAIKY--GRDDLSLSNVKNDLKSK 4080
KIV +L ++ ++DE A++LL++LP ++ + +KY R+ L L +V + K
Sbjct: 115 FLKIVADLNHLQIDVTDEVQAILLLSSLPARYDGLVETMKYSNSREKLRLDDVMVAARDK 174
Query: 4079 DLDLQKENKSHGENLFVRGRID---RTEPPSHRFKSRSKSQEKNKVKCFYCGKMVI*KIS 3909
+ +L + N+ E F RGR D + + +SRSKS + +V C+ CGK K
Sbjct: 175 ERELSQNNRPVVEGHFARGRPDGKNNNQGNKGKNRSRSKSADGKRV-CWICGKEGHFKKQ 233
Query: 3908 LL-----NKLKMRNNVNMVKEVIKSTK 3843
NK K + + N + KST+
Sbjct: 234 CYKWIERNKSKQQGSDNGESSLAKSTE 260
Score = 203 bits (517), Expect(3) = e-100
Identities = 99/172 (57%), Positives = 128/172 (74%)
Frame = -2
Query: 1933 KAFHKLRAFDFNAIFSPVIKYKMIRIILALVSFYDLNLEQLDVKTAFLHGDLDETIYMCQ 1754
K F + D+N IFSPV+K+ IR +L++V Y++ L+Q+DVKTAFLHG L+E IYM Q
Sbjct: 887 KGFTQKEGVDYNEIFSPVVKHVSIRYLLSMVVHYNMELQQMDVKTAFLHGFLEEEIYMAQ 946
Query: 1753 PLGFEV*GKEHMTCLLKKSLYGLKQSPRQWSKRFDSFMLNVGFSKSSYDICLYFSGNNVD 1574
P GFE+ + CLLK+SLYGLKQSPRQW+ RFD FM + +++S+YD C+YF N D
Sbjct: 947 PEGFEIKRGSNKVCLLKRSLYGLKQSPRQWNLRFDEFMRGIKYTRSAYDSCVYFKKCNGD 1006
Query: 1573 SVIYLLLYVDDMLIACKYKAKIDDLKSLLKSEFDMKDLGVASKILGMSIIRD 1418
+ IYLLLYVDDMLIA K+++++LK LL EF+MKDLG A KILGM I RD
Sbjct: 1007 TYIYLLLYVDDMLIASANKSEVNELKQLLSREFEMKDLGDAKKILGMEISRD 1058
Score = 182 bits (461), Expect(3) = e-100
Identities = 97/211 (45%), Positives = 133/211 (63%)
Frame = -1
Query: 1403 LFLS*KPLLQKIFSKFSMYLCKPVITPLASHFKLSDKTCPKTENEKRDMANIPYRMAIAS 1224
L LS + ++K+ F M KPV TPL HFKL T + E + M +PY I S
Sbjct: 1064 LTLSQEGYVKKVLRSFQMDNAKPVSTPLGIHFKLKAATDKEYEEQFERMKIVPYANTIGS 1123
Query: 1223 VMYSMISTRPDIAFSISLLSRFMSNPGRDHWAALKWLLHYLNGTLGRGLHYYNWSGVFEL 1044
+MYSMI TRPD+A+S+ ++SRFMS P +DHW A+KW+L Y+ GT + L + F L
Sbjct: 1124 IMYSMIGTRPDLAYSLGVISRFMSKPLKDHWQAVKWVLRYMRGTEKKKLCFRKQED-FLL 1182
Query: 1043 IGYVDSDFAGDKDGRKSTTSYFFTIAGNCVS*KSQLQPVVALSITEAEYIANMEAIEEAI 864
GY DSD+ + D R+S T Y FT+ GN +S KS+LQ VVA+S TEAEY+A EA++EA+
Sbjct: 1183 RGYCDSDYGSNFDTRRSITGYVFTVGGNTISWKSKLQKVVAISSTEAEYMALTEAVKEAL 1242
Query: 863 WLQKLLNELHVLHSKAIIYTDSQSSLHLCKN 771
WL+ EL +++DSQS++ L KN
Sbjct: 1243 WLKGFAAELGHSQDYVEVHSDSQSAITLAKN 1273
Score = 31.2 bits (69), Expect(3) = e-100
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = -3
Query: 786 TFMQKSVYHEWTKQIDVKYYFIREM 712
T + SV+HE TK ID++ +FIR++
Sbjct: 1269 TLAKNSVHHERTKHIDIRLHFIRDI 1293
>gb|AAP53216.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1262
Score = 243 bits (619), Expect(3) = e-143
Identities = 132/361 (36%), Positives = 187/361 (51%), Gaps = 3/361 (0%)
Frame = -2
Query: 3775 CTDVVNLLVLDSGCSFHMTSNKHWFSDFKPLNQGKVFMGNN*VCDIKGIGNIFIKIHDGV 3596
C + +LD+ C++HM SN+ WF+ ++ + G V MG++ C++ G
Sbjct: 347 CAQTSDQWILDTACTYHMCSNRDWFATYEAVQGGTVLMGDDTPCEVAGY----------- 395
Query: 3595 TRKLIEVRYVPNLHRNLISLSYLDSLGLSFKSKNGILLVCKGNLVMLKG-FKRETLYILL 3419
+ +GIL V KG+LV++K K LY L
Sbjct: 396 ----------------------------KYSGGDGILKVTKGSLVVMKADIKSANLYHLR 427
Query: 3418 GKTVCNSTALISKIVPKK--TMLWHQRIGHISEKGLYHLQKQNLLCGDKIDSLDFCDHCV 3245
G T+ + A +S + T LWH R+GH+SE GL L K+ LL G I L FC+HC+
Sbjct: 428 GTTILGNVAAVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRGLLDGQSIKKLKFCEHCI 487
Query: 3244 LGKQHKISFSTSTHKSSAPLDYVHCDLWGLEKVPTYGGNVYLLSIVDDFSRHVWVFLLKT 3065
GK ++ F+TSTH + LDYVH DLWG + ++GG Y+++IVDD+SR VW + LK
Sbjct: 488 FGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGARYMMTIVDDYSRKVWPYFLKH 547
Query: 3064 KDQTFEKFCEWKRLAENQSRNKLITIKTDNGLEFCYRKFSNLCASHGILHHRTVKYNPQQ 2885
K Q F+ F EWK + E Q+ K+ ++TDNG++FC + F + C S GI+ H TV + PQQ
Sbjct: 548 KYQAFDVFKEWKTMVERQTERKVKILRTDNGMDFCSKIFKSYCKSEGIVRHYTVPHTPQQ 607
Query: 2884 NGVAERMNRTIMDKVRCLMVSLGVPKPFWGEAVSMAVSLIDPFYSRKL*DSYRTLVWLTC 2705
NGVAER+ PK FW EAVS A LI+ S + VW
Sbjct: 608 NGVAERL-----------------PKQFWAEAVSTACYLINRSPSYAIDKKTPIKVWSGS 650
Query: 2704 P 2702
P
Sbjct: 651 P 651
Score = 186 bits (471), Expect(3) = e-143
Identities = 97/153 (63%), Positives = 116/153 (75%)
Frame = -2
Query: 1876 KYKMIRIILALVSFYDLNLEQLDVKTAFLHGDLDETIYMCQPLGFEV*GKEHMTCLLKKS 1697
K IR +L++V+ YD LEQ+DVKTAFLHG+L+E IYM QP GF V GKE++ C LKKS
Sbjct: 879 KASSIRTLLSIVAMYDYELEQMDVKTAFLHGELEEDIYMEQPEGFVVPGKENLVCRLKKS 938
Query: 1696 LYGLKQSPRQWSKRFDSFMLNVGFSKSSYDICLYFSGNNVDSVIYLLLYVDDMLIACKYK 1517
LYGLKQSPRQW KRFDSFML+ F +S+YD C+Y + S IYLLLYV+DMLIA K K
Sbjct: 939 LYGLKQSPRQWYKRFDSFMLSQKFRRSNYDSCVYLKVVD-GSAIYLLLYVNDMLIAAKDK 997
Query: 1516 AKIDDLKSLLKSEFDMKDLGVASKILGMSIIRD 1418
+I LK+ L SEF+MKDLG A KILGM I R+
Sbjct: 998 LEIAKLKAQLSSEFEMKDLGAAKKILGMEITRE 1030
Score = 134 bits (336), Expect(3) = e-143
Identities = 89/261 (34%), Positives = 136/261 (52%), Gaps = 2/261 (0%)
Frame = -1
Query: 2714 ANMSNLRVFGCVAFAHQKDGKLDPRSRKGVFRGYPSEVKGYRVWLKGEPGVRIVISRDVI 2535
AN S+LRVFGC+A+AH + KL+PR+ K +F GYPS VKGY++W ++VISR+V+
Sbjct: 652 ANYSDLRVFGCIAYAHVDNSKLEPRAIKCIFLGYPSGVKGYKLWCPETK--KVVISRNVV 709
Query: 2534 FNELYMPFIKDKHISDSQPSAPTSGSIPVEVEVTSEPSLEPSQEPKTNEELVTXXXXXXX 2355
F+E M + DK S ++PVE + + + E L++
Sbjct: 710 FHESVM--LHDK----------PSTNVPVESQEKASVQV---------EHLISSGHAPEK 748
Query: 2354 XXXXPETLEPVLEGFDKEVDHPETQAQALRDYQLVRDRVRRVSKEYSRY-GYSYIVSYAF 2178
PV+E D + Q + + +D+ +R K RY + IV+YA
Sbjct: 749 ENVAINLDAPVIEDSDSSI------VQQSPKHSIAKDKPKRNIKPPRRYIEEANIVAYAL 802
Query: 2177 AVASYVE-EKESLCFSDVLESPNRSLWLCAIDEEMSSLNKNKTWILVPKPSKQKLVDCKW 2001
+VA +E E +SD + S + + W+ A+ +EM SL KN TW LV P ++K + CKW
Sbjct: 803 SVAEEIEGNVEPSTYSDAIVSDDCNRWITAMHDEMESLEKNHTWELVKLPKEKKPIRCKW 862
Query: 2000 NFKIKEPESANEPPRFKARPV 1938
FK KE S ++ R+KA +
Sbjct: 863 IFKRKEGMSPSDEARYKASSI 883
Score = 98.2 bits (243), Expect(2) = 1e-19
Identities = 64/174 (36%), Positives = 85/174 (48%)
Frame = -1
Query: 1289 CPKTENEKRDMANIPYRMAIASVMYSMISTRPDIAFSISLLSRFMSNPGRDHWAALKWLL 1110
CP+++ + M+ +PY A+ S+MY+M D
Sbjct: 1044 CPQSDYDIEYMSRVPYSSAVGSLMYAMFGRSRD--------------------------- 1076
Query: 1109 HYLNGTLGRGLHYYNWSGVFELIGYVDSDFAGDKDGRKSTTSYFFTIAGNCVS*KSQLQP 930
L+GYVDSDFAGD D R+S T Y FTI G VS K+ LQ
Sbjct: 1077 --------------------GLVGYVDSDFAGDLDRRRSLTGYVFTIGGCAVSWKASLQA 1116
Query: 929 VVALSITEAEYIANMEAIEEAIWLQKLLNELHVLHSKAIIYTDSQSSLHLCKNQ 768
VALS T+AEY+A EA +EAIWL+ L EL + S I+ DSQS++ L K+Q
Sbjct: 1117 TVALSTTKAEYMAISEACKEAIWLRGLYTELCGVTSCINIFCDSQSAICLTKDQ 1170
Score = 28.9 bits (63), Expect(2) = 1e-19
Identities = 11/17 (64%), Positives = 15/17 (88%)
Frame = -3
Query: 768 VYHEWTKQIDVKYYFIR 718
++HE TK IDV+Y+FIR
Sbjct: 1171 MFHERTKYIDVRYHFIR 1187
>gb|AAD23690.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1333
Score = 305 bits (781), Expect(3) = e-142
Identities = 158/361 (43%), Positives = 223/361 (61%), Gaps = 5/361 (1%)
Frame = -2
Query: 3829 SDGNSMFSEV--LCVSLSPSCTDV--VNLLVLDSGCSFHMTSNKHWFSDFKPLNQGKVFM 3662
S+G+S +SE L VS + S TD+ + V+D+GCS+HMT + WF D G V M
Sbjct: 258 SNGSSNYSEANGLYVSEALSSTDIHLEDEWVMDTGCSYHMTYKREWFEDLNEDAGGSVRM 317
Query: 3661 GNN*VCDIKGIGNIFIKIHDGVTRKLIEVRYVPNLHRNLISLSYLDSLGLSFKSKNGILL 3482
GN V ++GIG I +K G+ +L VRY+P + RNL+SL + G SFK +NG L
Sbjct: 318 GNKTVSKVRGIGTIRVKNEAGMVVRLTNVRYIPEMDRNLLSLGTFEKSGYSFKLENGTLS 377
Query: 3481 VCKGNLVMLKGFKRETLYILLGKTVCNSTALISKIVPKKTMLWHQRIGHISEKGLYHLQK 3302
+ G+ V+L + TLY+L + V + + K T+LWH+R+GH+S+K + L K
Sbjct: 378 IIAGDSVLLTVRRCYTLYLLQWRPVTEESLSVVKR-QDDTILWHRRLGHMSQKNMDLLLK 436
Query: 3301 QNLLCGDKIDSLDFCDHCVLGKQHKISFSTSTHKSSAPLDYVHCDLWGLEKVP-TYGGNV 3125
+ LL K+ L+ C+ C+ GK +I F+ + H + L+YVH DLWG VP + G
Sbjct: 437 KGLLDKKKVSKLETCEDCIYGKAKRIGFNLAQHDTREKLEYVHSDLWGAPSVPFSLGKCQ 496
Query: 3124 YLLSIVDDFSRHVWVFLLKTKDQTFEKFCEWKRLAENQSRNKLITIKTDNGLEFCYRKFS 2945
Y +S +DD++R V ++ LKTKD+ F+KF EW L ENQ+ ++ T++TDNGLEFC R F
Sbjct: 497 YFISFIDDYTRKVRIYFLKTKDEAFDKFVEWANLVENQTDKRIKTLRTDNGLEFCNRSFD 556
Query: 2944 NLCASHGILHHRTVKYNPQQNGVAERMNRTIMDKVRCLMVSLGVPKPFWGEAVSMAVSLI 2765
C+ GIL HRT Y PQQNGVAERMNRT+M+KVR ++ G+PK FW EA LI
Sbjct: 557 EFCSQKGILWHRTCAYTPQQNGVAERMNRTLMEKVRSMLSDSGLPKKFWAEATHTTAILI 616
Query: 2764 D 2762
+
Sbjct: 617 N 617
Score = 142 bits (359), Expect(3) = e-142
Identities = 96/273 (35%), Positives = 139/273 (50%), Gaps = 5/273 (1%)
Frame = -1
Query: 2705 SNLRVFGCVAFAHQKDGKLDPRSRKGVFRGYPSEVKGYRVWLKGEPGVRIVISRDVIFNE 2526
S LR FGC+AF H DGKL+PR++KG+ GYP VKGY++WL E + V+SR+VIF E
Sbjct: 641 SYLRRFGCIAFVHTDDGKLNPRAKKGILVGYPIGVKGYKIWLLEEK--KCVVSRNVIFQE 698
Query: 2525 --LYMPFIKDKHISDSQPSAPTSGSIPVEV---EVTSEPSLEPSQEPKTNEELVTXXXXX 2361
Y ++ K + AP S + +++ EV + +P E ++
Sbjct: 699 NASYKDMMQSKDAEKDENEAPPSSYLDLDLDHEEVITSGGDDPIVEAQS----------- 747
Query: 2360 XXXXXXPETLEPVLEGFDKEVDHPETQAQALRDYQLVRDRVRRVSKEYSRYGYSYIVSYA 2181
P T + EG + E D Q+ YQLVRDR RR + R+ ++ A
Sbjct: 748 -PFNPSPATTQTYSEGVNSETDI----IQSPLSYQLVRDRDRRTIRAPVRFDDEDYLAEA 802
Query: 2180 FAVASYVEEKESLCFSDVLESPNRSLWLCAIDEEMSSLNKNKTWILVPKPSKQKLVDCKW 2001
E E +S+ S N + W A++EEM S KN TW +V +P QK++ +W
Sbjct: 803 LYTTEDSGEIEPADYSEAKRSMNWNKWKLAMNEEMESQIKNHTWTVVKRPQHQKVIGSRW 862
Query: 2000 NFKIKEPESANEPPRFKARPVAKGFSQVEGIRF 1902
+K K E RFKAR VAKG++Q +GI +
Sbjct: 863 IYKFKLGIPGVEEGRFKARLVAKGYAQRKGIDY 895
Score = 108 bits (271), Expect(3) = e-142
Identities = 67/183 (36%), Positives = 111/183 (60%), Gaps = 11/183 (6%)
Frame = -1
Query: 4445 SCLTLHLTDNVLREIDEKDNAFEIWTKLERLYLEKSLSNIIYLKEQLFGFKMSGSKTLSE 4266
S + L +TD VLR+I ++ +A + L++LY+ K+L N IY K++L+ FKMS + ++
Sbjct: 76 SAIVLSVTDRVLRKIKKEQSAAAMLGVLDKLYMSKALPNRIYQKQKLYSFKMSENLSIEG 135
Query: 4265 NMGDLNKIVLELQNVGEKISDENIAVILLNALPDSFNDVKYAIKY--GRDDLSLSNVKND 4092
N+ + +I+ +L+N +SDE+ A++LL +LP F+ ++ +KY GR LSL V
Sbjct: 136 NIDEFLRIIADLENTNVLVSDEDQAILLLMSLPKPFDQLRDTLKYGLGRVTLSLDEVVAA 195
Query: 4091 LKSKDLDL---QKENKSHGENLFV------RGRIDRTEPPSHRFKSRSKSQEKNKVKCFY 3939
+ SK+L+L +K K E LFV RGR ++ ++ KSRSKS ++K C+
Sbjct: 196 IYSKELELGSNKKSIKGQAEGLFVKEKTETRGRTEQRGNNNNNKKSRSKS--RSKKGCWI 253
Query: 3938 CGK 3930
CG+
Sbjct: 254 CGE 256
Score = 188 bits (477), Expect(4) = e-101
Identities = 95/189 (50%), Positives = 128/189 (67%), Gaps = 5/189 (2%)
Frame = -2
Query: 1969 MNLQGSRPGRLQ-----KAFHKLRAFDFNAIFSPVIKYKMIRIILALVSFYDLNLEQLDV 1805
+ + G GR + K + + + D++ IF+PV+K+ IRI++++V+ DL LEQLDV
Sbjct: 868 LGIPGVEEGRFKARLVAKGYAQRKGIDYHEIFAPVVKHVSIRILMSIVAQEDLELEQLDV 927
Query: 1804 KTAFLHGDLDETIYMCQPLGFEV*GKEHMTCLLKKSLYGLKQSPRQWSKRFDSFMLNVGF 1625
KTAFLHG+L E IYM P G+E KE CLL KSLYGLKQ+P+QW+++F+++M +GF
Sbjct: 928 KTAFLHGELKEKIYMVPPEGYEEMFKEDEVCLLNKSLYGLKQAPKQWNEKFNAYMSEIGF 987
Query: 1624 SKSSYDICLYFSGNNVDSVIYLLLYVDDMLIACKYKAKIDDLKSLLKSEFDMKDLGVASK 1445
+S YD C Y + S +YLLLYVDDML+A K K I LK L FDMKDLG A +
Sbjct: 988 IRSLYDSCAYIKELSDGSRVYLLLYVDDMLVAAKNKEDISQLKEELSQRFDMKDLGAAKR 1047
Query: 1444 ILGMSIIRD 1418
ILGM IIR+
Sbjct: 1048 ILGMEIIRN 1056
Score = 187 bits (475), Expect(4) = e-101
Identities = 94/214 (43%), Positives = 137/214 (64%)
Frame = -1
Query: 1412 DRSLFLS*KPLLQKIFSKFSMYLCKPVITPLASHFKLSDKTCPKTENEKRDMANIPYRMA 1233
+ +L+LS L KI ++M K V+TPL +H K+ T K E ++ M +IPY A
Sbjct: 1059 ENTLWLSQNGYLNKILETYNMAESKHVVTPLGAHLKMRAATVEKQEQDEDYMKSIPYSSA 1118
Query: 1232 IASVMYSMISTRPDIAFSISLLSRFMSNPGRDHWAALKWLLHYLNGTLGRGLHYYNWSGV 1053
+ S+MY+MI TRPD+A+ + ++SR+MS P R+HW +KW+L Y+ G+LG L Y S
Sbjct: 1119 VGSIMYAMIGTRPDLAYPVGIISRYMSQPAREHWLGVKWVLRYIKGSLGTKLQYKR-SSD 1177
Query: 1052 FELIGYVDSDFAGDKDGRKSTTSYFFTIAGNCVS*KSQLQPVVALSITEAEYIANMEAIE 873
F+++GY D+D A KD R+S T FT+ G+ +S KS Q VVALS TEAEY++ EA++
Sbjct: 1178 FKVVGYCDADHAACKDRRRSITGLVFTLGGSTISWKSGQQRVVALSTTEAEYMSLTEAVK 1237
Query: 872 EAIWLQKLLNELHVLHSKAIIYTDSQSSLHLCKN 771
EA+W++ LL E I+ DSQS++ L KN
Sbjct: 1238 EAVWMKGLLKEFGYEQKSVEIFCDSQSAIALSKN 1271
Score = 37.0 bits (84), Expect(4) = e-101
Identities = 17/30 (56%), Positives = 21/30 (70%)
Frame = -2
Query: 712 VSNGVVDIDKISTDNNPADFGTKIVSSNKF 623
++NG D+ KI T+ NPAD TKIV NKF
Sbjct: 1292 IANGDGDVVKIDTEKNPADIFTKIVPVNKF 1321
Score = 29.6 bits (65), Expect(4) = e-101
Identities = 11/22 (50%), Positives = 18/22 (81%)
Frame = -3
Query: 777 QKSVYHEWTKQIDVKYYFIREM 712
+ +V+HE TK IDV+Y +IR++
Sbjct: 1270 KNNVHHERTKHIDVRYQYIRDI 1291
>gb|AAF19226.1|AC007505_2 Highly similar to Ta1-3 polyprotein [Arabidopsis thaliana]
Length = 1356
Score = 310 bits (793), Expect(3) = e-141
Identities = 163/354 (46%), Positives = 214/354 (60%), Gaps = 3/354 (0%)
Frame = -2
Query: 3814 MFSEVLCVSLSPSCTDVVNLLVLDSGCSFHMTSNKHWFSDFKPLNQGKVFMGNN*VCDIK 3635
+FSE L V+ V +L +LDSGC+ HMTS + WF F+ + +G++ + +
Sbjct: 292 VFSEALSVNEQM----VKDLWILDSGCTSHMTSRRDWFISFQEKGNTTILLGDDHSVESQ 347
Query: 3634 GIGNIFIKIHDGVTRKLIEVRYVPNLHRNLISLSYLDSLGLSFKSKNGILLVCKGNLVML 3455
G G I I H G + L V+YVP+L RNLIS LD LG + G + K N L
Sbjct: 348 GQGTIRIDTHGGTIKILENVKYVPHLRRNLISTGTLDKLGYRHEGGEGKVRYFKNNKTAL 407
Query: 3454 KGFKRETLYILLGKTVCNS--TALISKIVPKKTMLWHQRIGHISEKGLYHLQKQNLLCGD 3281
+G LY+L G TV + A K+ KT LWH R+GH+S L L + L+
Sbjct: 408 RGSLSNGLYVLDGSTVMSELCNAETDKV---KTALWHSRLGHMSMNNLKVLAGKGLIDRK 464
Query: 3280 KIDSLDFCDHCVLGKQHKISFSTSTHKSSAPLDYVHCDLWGLEKV-PTYGGNVYLLSIVD 3104
+I+ L+FC+HCV+GK K+SF+ H S L YVH DLWG V P+ G Y LSI+D
Sbjct: 465 EINELEFCEHCVMGKSKKVSFNVGKHTSEDALSYVHADLWGSPNVTPSISGKQYFLSIID 524
Query: 3103 DFSRHVWVFLLKTKDQTFEKFCEWKRLAENQSRNKLITIKTDNGLEFCYRKFSNLCASHG 2924
D +R VW++ LK+KD+TF+KFCEWK L ENQ K+ ++TDNGLEFC +F + C HG
Sbjct: 525 DKTRKVWLYFLKSKDETFDKFCEWKSLVENQVNKKVKCLRTDNGLEFCNSRFDSYCKEHG 584
Query: 2923 ILHHRTVKYNPQQNGVAERMNRTIMDKVRCLMVSLGVPKPFWGEAVSMAVSLID 2762
I HRT Y PQQNGVAERMNRTIM+KVRCL+ GV + FW EA + A LI+
Sbjct: 585 IERHRTCTYTPQQNGVAERMNRTIMEKVRCLLNKSGVEEVFWAEAAATAAYLIN 638
Score = 146 bits (368), Expect(3) = e-141
Identities = 96/283 (33%), Positives = 139/283 (49%), Gaps = 16/283 (5%)
Frame = -1
Query: 2702 NLRVFGCVAFAHQKDGKLDPRSRKGVFRGYPSEVKGYRVWLKGEPGVRIVISRDVIFNE- 2526
+LR FG +A+ HQ GKL PR+ KG F GYP+ KGY+VWL E + VISR+V+F E
Sbjct: 663 HLRKFGSIAYVHQDQGKLKPRALKGFFLGYPAGTKGYKVWLLEEE--KCVISRNVVFQES 720
Query: 2525 -LYMPF-IKDKHISDSQPSAPTSGSIP-------------VEVEVTSEPSLEPSQEPKTN 2391
+Y +K+ + TS + ++++ SEP E Q +
Sbjct: 721 VVYRDLKVKEDDTDNLNQKETTSSEVEQNKFAEASGSGGVIQLQSDSEPITEGEQSSDSE 780
Query: 2390 EELVTXXXXXXXXXXXPETLEPVLEGFDKEVDHPETQAQALRDYQLVRDRVRRVSKEYSR 2211
EE +E +K + P + L Y+L RDRVRR +R
Sbjct: 781 EE---------------------VEYSEKTQETP--KRTGLTTYKLARDRVRRNINPPTR 817
Query: 2210 YGYSYIVSYAFAVASYVEEKESLCFSDVLESPNRSLWLCAIDEEMSSLNKNKTWILVPKP 2031
+ V++A V +E + + +ES + W A +EM SL KN TW LV KP
Sbjct: 818 FTEESSVTFALVVVENCIVQEPQSYQEAMESQDCEKWDMATHDEMDSLMKNGTWDLVDKP 877
Query: 2030 SKQKLVDCKWNFKIKEPESANEPPRFKARPVAKGFSQVEGIRF 1902
+K++ C+W FK+K EP RFKAR VAKG++Q EG+ +
Sbjct: 878 KDRKIIGCRWLFKLKSGIPGVEPTRFKARLVAKGYTQREGVDY 920
Score = 99.8 bits (247), Expect(3) = e-141
Identities = 56/173 (32%), Positives = 99/173 (57%), Gaps = 6/173 (3%)
Frame = -1
Query: 4430 HLTDNVLREIDEKDNAFEIWTKLERLYLEKSLSNIIYLKEQLFGFKMSGSKTLSENMGDL 4251
H++D VL +++ ++W L + Y+E SL N IY + +L+ FKM + T+ +N+ +
Sbjct: 89 HISDVVLLKVNHYATTADLWATLNKKYMETSLPNRIYTQLKLYSFKMVSTMTIDQNVDEF 148
Query: 4250 NKIVLELQNVGEKISDENIAVILLNALPDSFNDVKYAIKYGRDDLSLSNVKNDLKSKDLD 4071
+IV EL ++ ++ +E A+++LN+LP S +K+ +KYG L++ +V + KS + +
Sbjct: 149 LRIVAELGSLEIQVDEEVQAILILNSLPASHIQLKHTLKYGNKTLTVQDVTSSAKSLERE 208
Query: 4070 LQKE---NKSHGENLFV--RGR-IDRTEPPSHRFKSRSKSQEKNKVKCFYCGK 3930
L + +K L+ RGR + R + K RS+S K KV C+YC K
Sbjct: 209 LAEAVDLDKGQAAVLYTTERGRPLVRNNQKGGQGKGRSRSNSKTKVPCWYCKK 261
Score = 184 bits (467), Expect(4) = 4e-95
Identities = 94/172 (54%), Positives = 121/172 (70%)
Frame = -2
Query: 1933 KAFHKLRAFDFNAIFSPVIKYKMIRIILALVSFYDLNLEQLDVKTAFLHGDLDETIYMCQ 1754
K + + D+ IF+PV+K+ IRI+++LV DL LEQ+DVKT FLHGDL+E +YM Q
Sbjct: 910 KGYTQREGVDYQEIFAPVVKHVSIRILMSLVVDKDLELEQMDVKTTFLHGDLEEELYMEQ 969
Query: 1753 PLGFEV*GKEHMTCLLKKSLYGLKQSPRQWSKRFDSFMLNVGFSKSSYDICLYFSGNNVD 1574
P GF E+ C LKKSLYGLKQSPRQW+KRFD FM + F +S +D C+Y +
Sbjct: 970 PEGFVSDSSENKVCRLKKSLYGLKQSPRQWNKRFDRFMSSQQFIRSEHDACVYVKHVSEH 1029
Query: 1573 SVIYLLLYVDDMLIACKYKAKIDDLKSLLKSEFDMKDLGVASKILGMSIIRD 1418
IYLLLYVDDMLIA KA+I+ +K L +EF+MKD+G AS+ILG+ I RD
Sbjct: 1030 DFIYLLLYVDDMLIAGASKAEINRVKEQLSTEFEMKDMGGASRILGIDIYRD 1081
Score = 175 bits (444), Expect(4) = 4e-95
Identities = 93/211 (44%), Positives = 135/211 (63%)
Frame = -1
Query: 1403 LFLS*KPLLQKIFSKFSMYLCKPVITPLASHFKLSDKTCPKTENEKRDMANIPYRMAIAS 1224
L LS + ++K+ +F+M K P+ +HFKL+ + E+E D +PY A+ S
Sbjct: 1087 LKLSQEIYIRKVLDRFNMSGAKMTNAPVGAHFKLA---AVREEDECVDTDVVPYSSAVGS 1143
Query: 1223 VMYSMISTRPDIAFSISLLSRFMSNPGRDHWAALKWLLHYLNGTLGRGLHYYNWSGVFEL 1044
+MY+M+ TRPD+A++I L+SR+MS PG HW A+KW++ YL G L + F +
Sbjct: 1144 IMYAMLGTRPDLAYAICLISRYMSKPGSMHWEAVKWVMRYLKGAQDLNLVFTKEKD-FTV 1202
Query: 1043 IGYVDSDFAGDKDGRKSTTSYFFTIAGNCVS*KSQLQPVVALSITEAEYIANMEAIEEAI 864
GY DS++A D D R+S + Y FTI GN VS K+ LQPVVA+S TEAEYIA EA +EA+
Sbjct: 1203 TGYCDSNYAADLDRRRSISGYVFTIGGNTVSWKASLQPVVAMSTTEAEYIALAEAAKEAM 1262
Query: 863 WLQKLLNELHVLHSKAIIYTDSQSSLHLCKN 771
W++ LL ++ + K I+ DSQS++ L KN
Sbjct: 1263 WIKGLLQDMGMQQDKVKIWCDSQSAICLSKN 1293
Score = 31.2 bits (69), Expect(4) = 4e-95
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = -2
Query: 712 VSNGVVDIDKISTDNNPADFGTKIVSSNKF 623
V +G VD+ KI T NP D TK + NKF
Sbjct: 1314 VESGDVDVLKIHTSRNPVDALTKCIPVNKF 1343
Score = 30.8 bits (68), Expect(4) = 4e-95
Identities = 12/22 (54%), Positives = 18/22 (81%)
Frame = -3
Query: 777 QKSVYHEWTKQIDVKYYFIREM 712
+ SVYHE TK IDV++ +IR++
Sbjct: 1292 KNSVYHERTKHIDVRFNYIRDV 1313
>emb|CAB75481.1| copia-like polyprotein [Arabidopsis thaliana]
Length = 1363
Score = 309 bits (791), Expect(3) = e-137
Identities = 156/356 (43%), Positives = 220/356 (61%), Gaps = 3/356 (0%)
Frame = -2
Query: 3820 NSMFSEVLCVSLSPSCTDV--VNLLVLDSGCSFHMTSNKHWFSDFKPLNQGKVFMGNN*V 3647
N + S + VS + S TD+ + ++D+GC +HMT + W DF G V MGN +
Sbjct: 292 NFVESAGMFVSEALSSTDIHLEDEWIMDTGCIYHMTHKREWLEDFDEEAGGSVRMGNKSI 351
Query: 3646 CDIKGIGNIFIKIHDGVTRKLIEVRYVPNLHRNLISLSYLDSLGLSFKSKNGILLVCKGN 3467
+KG+G + I +G+T L VRY+P++ RNL+SL + G F+S+NG+L + GN
Sbjct: 352 SRVKGVGTVRIVNDNGLTVTLQNVRYIPDMDRNLLSLGTFEKAGHKFESENGMLRIKSGN 411
Query: 3466 LVMLKGFKRETLYILLGKTVCNSTALISKIVPKKTMLWHQRIGHISEKGLYHLQKQNLLC 3287
V+L+G + +TLYIL GK + + +++ T+LWH+R+ H+S+K + L K+ L
Sbjct: 412 QVLLEGRRYDTLYILHGKPATDESLAVAR-ANDDTVLWHRRLCHMSQKNMSLLIKKGFLD 470
Query: 3286 GDKIDSLDFCDHCVLGKQHKISFSTSTHKSSAPLDYVHCDLWGLEKVPTYGGNV-YLLSI 3110
K+ LD C+ C+ G+ KI F+ + H + L+YVH DLWG VP GN Y +S
Sbjct: 471 KKKVSMLDTCEDCIYGRAKKIGFNLAQHDTKKKLEYVHSDLWGAPTVPMSLGNCQYFISF 530
Query: 3109 VDDFSRHVWVFLLKTKDQTFEKFCEWKRLAENQSRNKLITIKTDNGLEFCYRKFSNLCAS 2930
+DD++R VWV+ LKTKD+ FEKF W L ENQS ++ T++TDNGLEFC R F C
Sbjct: 531 IDDYTRKVWVYFLKTKDEAFEKFVSWISLVENQSGERVKTLRTDNGLEFCNRMFDGFCEE 590
Query: 2929 HGILHHRTVKYNPQQNGVAERMNRTIMDKVRCLMVSLGVPKPFWGEAVSMAVSLID 2762
G HRT Y PQQNGV ERMNRTIM+KVR ++ G+PK FW EA AV LI+
Sbjct: 591 KGFQRHRTCAYTPQQNGVVERMNRTIMEKVRSMLCDSGLPKRFWAEATHTAVLLIN 646
Score = 125 bits (315), Expect(3) = e-137
Identities = 90/271 (33%), Positives = 131/271 (48%), Gaps = 3/271 (1%)
Frame = -1
Query: 2705 SNLRVFGCVAFAHQKDGKLDPRSRKGVFRGYPSEVKGYRVWLKGEPGVRIVISRDVIFNE 2526
S LR +GCV F H GKL+ R++KGV GYPS VKGY+VWL E + V+SR+V F E
Sbjct: 670 SYLRRYGCVTFVHTDGGKLNLRAKKGVLIGYPSGVKGYKVWLIEEK--KCVVSRNVSFQE 727
Query: 2525 --LYMPFIKDKHISDSQPSAPTSGSIPVEVEVTSEPSLEPSQEPKTNEELVTXXXXXXXX 2352
+Y ++ K + I +++E + S Q ++ VT
Sbjct: 728 NAVYKDLMQRKEQVSCEEDDHAGSYIDLDLEADKDNSSGGEQ----SQAQVTPATRGAVT 783
Query: 2351 XXXPETLEPVLEGFDKEVDHPETQA-QALRDYQLVRDRVRRVSKEYSRYGYSYIVSYAFA 2175
+ P E D E ET Q+ Y LVRDR RR + R+ + A
Sbjct: 784 -----STPPRYETDDIE----ETDVHQSPLSYHLVRDRERREIRAPRRFDDEDYYAEALY 834
Query: 2174 VASYVEEKESLCFSDVLESPNRSLWLCAIDEEMSSLNKNKTWILVPKPSKQKLVDCKWNF 1995
+ E + + + N W A++EE+ S KN TW V +P KQ+++ +W +
Sbjct: 835 TTEDGDAVEPADYKEAVRDENWDKWRLAMNEEIESQLKNDTWTTVTRPEKQRIIGSRWIY 894
Query: 1994 KIKEPESANEPPRFKARPVAKGFSQVEGIRF 1902
K K+ E PRFKAR VAKG++Q EG+ +
Sbjct: 895 KYKQGIPGVEEPRFKARLVAKGYAQREGVDY 925
Score = 106 bits (264), Expect(3) = e-137
Identities = 61/178 (34%), Positives = 108/178 (60%), Gaps = 6/178 (3%)
Frame = -1
Query: 4445 SCLTLHLTDNVLREIDEKDNAFEIWTKLERLYLEKSLSNIIYLKEQLFGFKMSGSKTLSE 4266
S + L ++D VLR+I ++ +A + L+RLY+ K+L N IYLK++L+ FKMS + ++
Sbjct: 76 STIVLSVSDRVLRKIKKETSAAAMLEALDRLYMSKALPNRIYLKQKLYSFKMSENLSIEG 135
Query: 4265 NMGDLNKIVLELQNVGEKISDENIAVILLNALPDSFNDVKYAIKY--GRDDLSLSNVKND 4092
N+ + IV +L+N+ +SDE+ A++LL +LP F+ +K +KY G+ LSL V
Sbjct: 136 NIDEFLHIVADLENLNVLVSDEDQAILLLMSLPKPFDQLKDTLKYSSGKTVLSLDEVAAA 195
Query: 4091 LKSKDLD---LQKENKSHGENLFVRGRIDRTEPPSHRFKSRSK-SQEKNKVKCFYCGK 3930
+ S++L+ ++K K E L+V+ + + + K + K S+ K+K C+ CG+
Sbjct: 196 IYSRELEFGSVKKSIKGQAEGLYVKDKAENRGRSEQKDKGKGKRSKSKSKRGCWICGE 253
Score = 184 bits (468), Expect(3) = 4e-53
Identities = 93/211 (44%), Positives = 132/211 (62%)
Frame = -1
Query: 1403 LFLS*KPLLQKIFSKFSMYLCKPVITPLASHFKLSDKTCPKTENEKRDMANIPYRMAIAS 1224
L+LS + L K+ F+M KP +TPL +H K+ T K E+ M ++PY A+ S
Sbjct: 1092 LWLSQESYLNKVLKTFNMLESKPALTPLGAHLKMKSATEEKLSTEEEYMNSVPYSSAVGS 1151
Query: 1223 VMYSMISTRPDIAFSISLLSRFMSNPGRDHWAALKWLLHYLNGTLGRGLHYYNWSGVFEL 1044
+MY+MI TRPD+A+ + ++SRFMS P ++HW +KW+L Y+ GT+ L Y S F +
Sbjct: 1152 IMYAMIGTRPDLAYPVGVVSRFMSQPAKEHWLGVKWVLRYIKGTVDTRLCYKRNSD-FSI 1210
Query: 1043 IGYVDSDFAGDKDGRKSTTSYFFTIAGNCVS*KSQLQPVVALSITEAEYIANMEAIEEAI 864
GY D+D+A D D R+S T FT+ GN +S KS LQ VVA S TE EY++ EA++EAI
Sbjct: 1211 CGYCDADYAADLDKRRSITGLVFTLGGNTISWKSGLQRVVAQSSTECEYMSLTEAVKEAI 1270
Query: 863 WLQKLLNELHVLHSKAIIYTDSQSSLHLCKN 771
WL+ LL + I+ DSQS++ L KN
Sbjct: 1271 WLKGLLKDFGYEQKNVEIFCDSQSAIALSKN 1301
Score = 42.4 bits (98), Expect(3) = 4e-53
Identities = 18/37 (48%), Positives = 26/37 (70%)
Frame = -2
Query: 712 VSNGVVDIDKISTDNNPADFGTKIVSSNKFMFCRDFL 602
+++G V++ KIST+ NPAD TK++ NKF DFL
Sbjct: 1322 IADGKVEVSKISTEKNPADIFTKVLPVNKFQTALDFL 1358
Score = 32.7 bits (73), Expect(3) = 4e-53
Identities = 13/22 (59%), Positives = 19/22 (86%)
Frame = -3
Query: 777 QKSVYHEWTKQIDVKYYFIREM 712
+ +V+HE TK IDVK++FIRE+
Sbjct: 1300 KNNVHHERTKHIDVKFHFIREI 1321
Score = 182 bits (462), Expect = 1e-42
Identities = 102/220 (46%), Positives = 139/220 (63%), Gaps = 5/220 (2%)
Frame = -2
Query: 1933 KAFHKLRAFDFNAIFSPVIKYKMIRIILALVSFYDLNLEQLDVKTAFLHGDLDETIYMCQ 1754
K + + D++ IF+PV+K+ IRI+L++V+ +L LEQLDVKTAFLHG+L E IYM
Sbjct: 915 KGYAQREGVDYHEIFAPVVKHVSIRILLSIVAQENLELEQLDVKTAFLHGELKEKIYMMP 974
Query: 1753 PLGFEV*GKEHMTCLLKKSLYGLKQSPRQWSKRFDSFMLNVGFSKSSYDICLYFSGNNVD 1574
P G E KE+ CLL KSLYGLKQ+PRQW+++F+ +M +GF +S YD C Y + D
Sbjct: 975 PEGCESLFKENEVCLLNKSLYGLKQAPRQWNEKFNHYMTEIGFKRSDYDSCAYTKKLSDD 1034
Query: 1573 SVIYLLLYVDDMLIACKYKAKIDDLKSLLKSEFDMKDLGVASKILGMSIIRDS-----LI 1409
S +YLL YVDDML+A ID LK L +F+MKDLG A KILG+ II D +
Sbjct: 1035 STMYLLFYVDDMLVAANNMQAIDALKKELSIKFEMKDLGAAKKILGIEIIIDREAGVLWL 1094
Query: 1408 VHFSYLRSPCFRKFSLNFLCICVSPL*PHLRAISNFQTKL 1289
SYL + + F++ ++PL HL+ S + KL
Sbjct: 1095 SQESYL-NKVLKTFNMLESKPALTPLGAHLKMKSATEEKL 1133
>emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]
Length = 1334
Score = 322 bits (825), Expect(2) = e-132
Identities = 160/333 (48%), Positives = 215/333 (64%), Gaps = 3/333 (0%)
Frame = -2
Query: 3751 VLDSGCSFHMTSNKHWFSDFKPLNQGKVFMGNN*VCDIKGIGNIFIKIHD---GVTRKLI 3581
V+DSGCSFH+ K F ++ ++ G+V MGNN VC+I GI F K + R L
Sbjct: 293 VIDSGCSFHLCPEKTLFYKYEAVDGGRVLMGNNNVCNIVGIW--FCKRSRCLMELLRSLH 350
Query: 3580 EVRYVPNLHRNLISLSYLDSLGLSFKSKNGILLVCKGNLVMLKGFKRETLYILLGKTVCN 3401
EVR+ P L RNLISL LDSLG FKS+ G L V KG +++KG LY+L G +V
Sbjct: 351 EVRHAPRLKRNLISLGMLDSLGYFFKSRIGGLEVRKGTEIVMKGVNENGLYVLQGSSVPV 410
Query: 3400 STALISKIVPKKTMLWHQRIGHISEKGLYHLQKQNLLCGDKIDSLDFCDHCVLGKQHKIS 3221
+ + +T LWH R+GH+S KGL L KQ LL GD+I L+FC++C+ GK H+
Sbjct: 411 QEGVSAVSEEDRTKLWHLRLGHMSIKGLQELSKQGLLGGDRIQQLEFCENCIFGKSHRSK 470
Query: 3220 FSTSTHKSSAPLDYVHCDLWGLEKVPTYGGNVYLLSIVDDFSRHVWVFLLKTKDQTFEKF 3041
F+ H S LDY H D WG +VP+ G Y +S++DD+SR VW+++LK KDQ EKF
Sbjct: 471 FNKGEHMSKQVLDYAHIDHWGPAQVPSLSGGRYFMSLIDDYSRKVWIYILKIKDQALEKF 530
Query: 3040 CEWKRLAENQSRNKLITIKTDNGLEFCYRKFSNLCASHGILHHRTVKYNPQQNGVAERMN 2861
WK L ENQS KL ++TDNGLEFC + F C HGI H+TV++ PQQNG+AERMN
Sbjct: 531 KVWKSLVENQSDFKLKCLRTDNGLEFCSKVFEEYCQKHGIKRHKTVRFTPQQNGLAERMN 590
Query: 2860 RTIMDKVRCLMVSLGVPKPFWGEAVSMAVSLID 2762
RT++DK RC++++ +P+ FW EAV+ A L++
Sbjct: 591 RTLVDKTRCMLINSKLPRSFWAEAVNTASYLVN 623
Score = 180 bits (457), Expect(2) = e-132
Identities = 105/274 (38%), Positives = 152/274 (55%), Gaps = 3/274 (1%)
Frame = -1
Query: 2714 ANMSNLRVFGCVAFAHQKDGKLDPRSRKGVFRGYPSEVKGYRVWLKGEPGVRIVISRDVI 2535
AN NLRVFGC A+ H GKL+ R+ KGVF GYP VKGY++W K + + ++SRDV+
Sbjct: 644 ANYQNLRVFGCPAYLHINQGKLEARALKGVFVGYPDGVKGYKIWCKDQG--KCIVSRDVV 701
Query: 2534 FNELYMPFIKDKH---ISDSQPSAPTSGSIPVEVEVTSEPSLEPSQEPKTNEELVTXXXX 2364
F+E + +H + D+ + SGS +V V +E +++E T
Sbjct: 702 FHESVLLKESAEHDAGLQDNPAANKRSGSETSKVNVELLTDKSSEKEAASDDERATA--- 758
Query: 2363 XXXXXXXPETLEPVLEGFDKEVDHPETQAQALRDYQLVRDRVRRVSKEYSRYGYSYIVSY 2184
E + EV E L++YQL RDRVRR + RYGY+ +++Y
Sbjct: 759 ---------------ESEEHEVS--ELPQADLQNYQLARDRVRREVRAPVRYGYADLIAY 801
Query: 2183 AFAVASYVEEKESLCFSDVLESPNRSLWLCAIDEEMSSLNKNKTWILVPKPSKQKLVDCK 2004
A A V +E FS+ +ES + WL A+ +EM SL +N+TW L+P P ++L++CK
Sbjct: 802 ALLCADEVTIEEPANFSEAMESVHCDKWLEAMQDEMESLQRNQTWTLIPNPGNKRLINCK 861
Query: 2003 WNFKIKEPESANEPPRFKARPVAKGFSQVEGIRF 1902
W FK E EPP++KAR VA+GF+Q EG+ F
Sbjct: 862 WIFKRNEGIPDVEPPKYKARLVARGFTQREGVDF 895
Score = 221 bits (564), Expect(4) = e-110
Identities = 114/209 (54%), Positives = 143/209 (68%)
Frame = -2
Query: 2044 LFQNPQNKN*LIANGIXXXXXXXXLMNLQGSRPGRLQKAFHKLRAFDFNAIFSPVIKYKM 1865
L NP NK + I + + + + F + DFN IFSPV+K+
Sbjct: 848 LIPNPGNKRLINCKWIFKRNEGIPDVEPPKYKARLVARGFTQREGVDFNEIFSPVVKHSS 907
Query: 1864 IRIILALVSFYDLNLEQLDVKTAFLHGDLDETIYMCQPLGFEV*GKEHMTCLLKKSLYGL 1685
IRI+LA+V+ DL LEQ+DVKTAFLHG+L+E I M QP GFE KE CLL KSLYGL
Sbjct: 908 IRILLAMVALLDLELEQMDVKTAFLHGNLEEQILMAQPEGFECKDKEDYVCLLHKSLYGL 967
Query: 1684 KQSPRQWSKRFDSFMLNVGFSKSSYDICLYFSGNNVDSVIYLLLYVDDMLIACKYKAKID 1505
KQSPRQW +RFD FM++ G+ +S YD C+YF G++ V YLLLYVDDMLIA KYK++I+
Sbjct: 968 KQSPRQWYRRFDDFMVSKGYRRSRYDSCVYFGGSDQGGVAYLLLYVDDMLIASKYKSEIE 1027
Query: 1504 DLKSLLKSEFDMKDLGVASKILGMSIIRD 1418
LK+LLK+EF+MKDLG A +ILGM IIRD
Sbjct: 1028 RLKNLLKAEFEMKDLGNAKRILGMDIIRD 1056
Score = 190 bits (482), Expect(4) = e-110
Identities = 100/214 (46%), Positives = 141/214 (65%), Gaps = 1/214 (0%)
Frame = -1
Query: 1406 SLFLS*KPLLQKIFSKFSMYLCKPVITPLASHFKLSDKTCPKTENEKRDMANIPYRMAIA 1227
+LFLS ++K+ +F M CKPV TPL FKLS T T ++ M PY A+
Sbjct: 1061 TLFLSQGKYIKKVLERFEMQDCKPVQTPLGPQFKLSAAT---TSEDESQMNEFPYAQAVG 1117
Query: 1226 SVMYSMISTRPDIAFSISLLSRFMSNPGRDHWAALKWLLHYLNGTLGRGLHYYNW-SGVF 1050
S+MY+M+ TR DIA+++S++SR++S PG+ HW A+KW++ YL G+ GL Y S
Sbjct: 1118 SLMYAMVCTRSDIAYAVSVVSRYLSCPGKVHWNAVKWIMRYLKGSSTCGLLYGKTKSDKI 1177
Query: 1049 ELIGYVDSDFAGDKDGRKSTTSYFFTIAGNCVS*KSQLQPVVALSITEAEYIANMEAIEE 870
E++G+VDSDFAGD D RKST+ Y F + +S KS LQ ALS TEAE+IA EA++E
Sbjct: 1178 EVMGFVDSDFAGDLDRRKSTSRYMFVLNSCLISWKSSLQSGGALSSTEAEFIATTEAVKE 1237
Query: 869 AIWLQKLLNELHVLHSKAIIYTDSQSSLHLCKNQ 768
A+WL+ LLNEL + ++ D+Q+++HL KNQ
Sbjct: 1238 AMWLRGLLNELWLNQKIVQVFCDNQNAIHLVKNQ 1271
Score = 32.7 bits (73), Expect(4) = e-110
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = -2
Query: 736 QILFY*GNVSNGVVDIDKISTDNNPADFGTKIVSSNKFMFC 614
++ F V G V + KI T NPAD TK + + KF FC
Sbjct: 1283 KLQFIRDEVGKGTVVVSKIHTSVNPADALTKSLPTAKFEFC 1323
Score = 29.3 bits (64), Expect(4) = e-110
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = -3
Query: 780 MQKSVYHEWTKQIDVKYYFIRE 715
++ +YHE TK IDVK FIR+
Sbjct: 1268 VKNQMYHERTKHIDVKLQFIRD 1289
Score = 119 bits (297), Expect = 2e-23
Identities = 70/180 (38%), Positives = 105/180 (58%), Gaps = 7/180 (3%)
Frame = -1
Query: 4448 HSCLTLHLTDNVLREIDEKDNAFEIWTKLERLYLEKSLSNIIYLKEQLFGFKMSGSKTLS 4269
HS L L L D++LREI E+ A IW K+E L ++KSL++ ++LK++L+ F M T+
Sbjct: 62 HSTLILSLGDSILREISEEKTALGIWNKVETLCMKKSLAHRLFLKKRLYTFSMREGVTIQ 121
Query: 4268 ENMGDLNKIVLELQNV-GEKISDENIAVILLNALPDSFNDVKYAIKYGRDDLSLSNVKND 4092
+++ NKI+L+L+ V KI DE+ A LL++LP S+ + YGR L+L +VK
Sbjct: 122 DHIDTFNKIILDLEGVENVKICDEDKAFFLLSSLPKSYEGFVDTMLYGRTTLTLEDVKAS 181
Query: 4091 LKSKDLDLQKE-NKSHGENLFVRGRIDRTEPPSHRFKSRSKSQE-----KNKVKCFYCGK 3930
L SK++ E S+GE L R + + ++ K K+QE K K KCFYC K
Sbjct: 182 LSSKEIQKNCELETSNGEGLMARTEKKKDQKNKNQGKGHGKNQETADKKKKKRKCFYCRK 241
>emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]
Length = 1208
Score = 321 bits (822), Expect(2) = e-129
Identities = 156/329 (47%), Positives = 212/329 (64%)
Frame = -2
Query: 3748 LDSGCSFHMTSNKHWFSDFKPLNQGKVFMGNN*VCDIKGIGNIFIKIHDGVTRKLIEVRY 3569
L G F +K FK + G V +GNN C I G G + IK +DG+ R L +VRY
Sbjct: 263 LIQGALFTCVLSKLGLKTFKEADGGYVLLGNNKHCKILGTGTVRIKHYDGIERVLEDVRY 322
Query: 3568 VPNLHRNLISLSYLDSLGLSFKSKNGILLVCKGNLVMLKGFKRETLYILLGKTVCNSTAL 3389
+P L RNLISL LD G +FKS+ L V +G+L ++KG + LY L+G+TV +
Sbjct: 323 IPELKRNLISLGMLDKSGYTFKSEPNSLRVARGSLTVMKGTIKNGLYTLIGQTVTGKVST 382
Query: 3388 ISKIVPKKTMLWHQRIGHISEKGLYHLQKQNLLCGDKIDSLDFCDHCVLGKQHKISFSTS 3209
+ K T LWHQR+GHIS +GL L+KQ +L K+ L FC+HCV GK ++ F+ +
Sbjct: 383 VLKEDVGTTKLWHQRLGHISHRGLQELEKQGVLGNYKLTDLPFCEHCVFGKATRVKFAKA 442
Query: 3208 THKSSAPLDYVHCDLWGLEKVPTYGGNVYLLSIVDDFSRHVWVFLLKTKDQTFEKFCEWK 3029
H++ LDY+H DLWG +VP+ GG Y L+++DD+SR VW++ LK K +TF KF EWK
Sbjct: 443 IHETQNQLDYIHSDLWGPSRVPSIGGARYFLTLIDDYSRKVWIYFLKNKSETFLKFKEWK 502
Query: 3028 RLAENQSRNKLITIKTDNGLEFCYRKFSNLCASHGILHHRTVKYNPQQNGVAERMNRTIM 2849
L E Q+ K+ ++TDNGLEF F++LC GI HRTV+Y PQQNG+AERMNRTI+
Sbjct: 503 ILVETQTSRKVKKLRTDNGLEFLSNDFNSLCQKEGIARHRTVRYTPQQNGLAERMNRTIL 562
Query: 2848 DKVRCLMVSLGVPKPFWGEAVSMAVSLID 2762
++VRC++ S G+ K FW EA AV LI+
Sbjct: 563 ERVRCMLSSSGLSKVFWAEAAETAVHLIN 591
Score = 172 bits (435), Expect(2) = e-129
Identities = 99/273 (36%), Positives = 145/273 (53%), Gaps = 2/273 (0%)
Frame = -1
Query: 2714 ANMSNLRVFGCVAFAHQKDGKLDPRSRKGVFRGYPSEVKGYRVWLKGEPGVRIVISRDVI 2535
A+ +L+VFGC A+ H K KL+PR+ K +F GYP VKGY++W++ + + +ISRDV
Sbjct: 612 ADYQHLKVFGCTAYVHTKTDKLEPRAVKCIFLGYPKGVKGYKLWIETQGKGKCIISRDVT 671
Query: 2534 FNELYMPFIKDKHISDSQPSAPTSGSIPVEVEVTSEPSLEPSQEPKTNEELVTXXXXXXX 2355
FNE + +S P+ G ++ EV E +L+P + +T+ +
Sbjct: 672 FNE--------QDMSKQTPAKDVEGLDQLQFEVEHE-TLQPEKSKETSSKTA-------- 714
Query: 2354 XXXXPETLEPVLEGFDKEVDHPETQ--AQALRDYQLVRDRVRRVSKEYSRYGYSYIVSYA 2181
+E+ H Q L Y LVRDR +R K RYG + + ++A
Sbjct: 715 ---------------QEEIVHERQNEPTQGLESYNLVRDRQKRQVKPPKRYGQAEMTAFA 759
Query: 2180 FAVASYVEEKESLCFSDVLESPNRSLWLCAIDEEMSSLNKNKTWILVPKPSKQKLVDCKW 2001
+VA + + E + + + S W+ AI EEM SL KN+TW LV KP +K+V KW
Sbjct: 760 LSVAEEIVDMEPKTYQEAINSNEADQWVKAIQEEMDSLRKNETWELVTKPKDRKVVGSKW 819
Query: 2000 NFKIKEPESANEPPRFKARPVAKGFSQVEGIRF 1902
FK K+ NE PR+KAR VAKGFSQ EG+ +
Sbjct: 820 VFKRKQGTLGNEAPRYKARLVAKGFSQKEGVDY 852
Score = 183 bits (465), Expect(3) = 8e-70
Identities = 91/175 (52%), Positives = 123/175 (70%), Gaps = 1/175 (0%)
Frame = -1
Query: 1286 PKTENEKRDMANIPYRMAIASVMYSMISTRPDIAFSISLLSRFMSNPGRDHWAALKWLLH 1107
P+T EKR M IPY + SVMY+M+ +RPD+A+++S++SR+MS PG+ HW A+KWL
Sbjct: 974 PETHEEKRFMERIPYASMVGSVMYTMVCSRPDLAYAVSMISRYMSCPGKPHWQAVKWLFQ 1033
Query: 1106 YLNGTLGRGLHYYNWSGV-FELIGYVDSDFAGDKDGRKSTTSYFFTIAGNCVS*KSQLQP 930
YL GT GL Y S + +L G+VD+D+AG+ D RKS T Y FT G VS K+ LQ
Sbjct: 1034 YLAGTRSLGLVYGGNSQLETQLQGFVDADYAGNIDTRKSLTGYVFTXFGGAVSWKANLQS 1093
Query: 929 VVALSITEAEYIANMEAIEEAIWLQKLLNELHVLHSKAIIYTDSQSSLHLCKNQS 765
VVALS TEAEY+A EA++EAIWL+ + EL + K ++Y D+QS++HL KNQS
Sbjct: 1094 VVALSTTEAEYMAMTEAVKEAIWLKGITEELAMYRGKVVVYCDNQSAIHLAKNQS 1148
Score = 107 bits (267), Expect(3) = 8e-70
Identities = 71/190 (37%), Positives = 93/190 (48%), Gaps = 6/190 (3%)
Frame = -2
Query: 1933 KAFHKLRAFDFNAIFSPVIKYKMIRIILALVSFYDLNLEQLDVKTAFLHGDLDETIYMCQ 1754
K F + D+N IFSPV+K+ IR++LA V+ DL L+QLDVKTAFLHG+LDE IYM
Sbjct: 842 KGFSQKEGVDYNEIFSPVVKHSSIRLLLAFVAHEDLELDQLDVKTAFLHGELDELIYMQP 901
Query: 1753 PLGFEV*GKEHMTCLLKKSLYGLKQSPRQWSKRFDSFMLNVGFSKSSYDICLYFSGNNVD 1574
P + L+G Q WS
Sbjct: 902 P----------------ERLWGRNQG---WS----------------------------- 913
Query: 1573 SVIYLLLYVDDMLIACKYKAKIDDLKSLLKSEFDMKDLGVASKILGMSIIRD------SL 1412
DDML+ACK K ++ +K +LK+EF+MKDLG A +ILGM I RD L
Sbjct: 914 ---------DDMLVACKEKRHLEQVKEMLKAEFEMKDLGSAKRILGMEIERDRSKRVLRL 964
Query: 1411 IVHFSYLRSP 1382
F +L++P
Sbjct: 965 SQKFIHLKAP 974
Score = 25.0 bits (53), Expect(3) = 8e-70
Identities = 8/18 (44%), Positives = 15/18 (83%)
Frame = -3
Query: 765 YHEWTKQIDVKYYFIREM 712
+HE +K IDV+ +F+R++
Sbjct: 1149 FHERSKHIDVRLHFVRDI 1166
Score = 139 bits (350), Expect = 1e-29
Identities = 75/174 (43%), Positives = 113/174 (64%), Gaps = 1/174 (0%)
Frame = -1
Query: 4448 HSCLTLHLTDNVLREIDEKDNAFEIWTKLERLYLEKSLSNIIYLKEQLFGFKMSGSKTLS 4269
HS + L L D VLRE + +A E+W KLE LY+ KSL+N ++ K +L+ FKM+ ++
Sbjct: 60 HSAIILSLGDTVLREXAKAKSAAEVWLKLESLYMTKSLANRLHKKIKLYTFKMTPGMSIE 119
Query: 4268 ENMGDLNKIVLELQNVGEKISDENIAVILLNALPDSFNDVKYAIKYGRDDLSLSNVKNDL 4089
++ NKI+L+L+N+ ISDE+ A++LL +L S+ ++K AI YGRD L+ V++ L
Sbjct: 120 XHLDHFNKIILDLENIDITISDEDKAILLLTSLDASYTNMKDAIMYGRDSLTFDEVQSIL 179
Query: 4088 KSKDLDLQKENKSH-GENLFVRGRIDRTEPPSHRFKSRSKSQEKNKVKCFYCGK 3930
+++L Q+E+K GE L +RGR ++ E KSRSKS+ K K KCF C K
Sbjct: 180 HARELQKQEESKEESGEGLNIRGRSEKREKKGKNSKSRSKSKTK-KFKCFICHK 232
>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
copia LTR rider [Solanum lycopersicum]
Length = 1307
Score = 329 bits (843), Expect(2) = e-127
Identities = 156/332 (46%), Positives = 223/332 (67%), Gaps = 2/332 (0%)
Frame = -2
Query: 3751 VLDSGCSFHMTSNKHWFSDFKPLNQGKVFMGNN*VCDIKGIGNIFIKIHDGVTRKLIEVR 3572
VLDSG S+H+ + WF+ ++ ++ G + M N+ VC + G G+I I+ HDG L EVR
Sbjct: 280 VLDSGASYHICPRREWFTTYEQVDGGSISMANSSVCKVVGTGSIKIRTHDGSFCTLNEVR 339
Query: 3571 YVPNLHRNLISLSYLDSLGLSFKSKNGILLVCKGNLVMLKGFKRETLYILLGKTVCNSTA 3392
+VP + +NLISLS LDS G S+ K+G+L V KG+ ++LKG R TLY L G TV S
Sbjct: 340 HVPLMTKNLISLSLLDSKGFSWSGKDGVLRVWKGSNLILKGVMRGTLYFLQGSTVTGSAH 399
Query: 3391 LISKIVPKKTM--LWHQRIGHISEKGLYHLQKQNLLCGDKIDSLDFCDHCVLGKQHKISF 3218
+ S +K M LWH R+GH+ E+G+ L K++LL G K+ SL+FC+HCV GK H+ F
Sbjct: 400 VASSEFHQKDMTKLWHIRLGHMGERGMQILSKEDLLAGHKVKSLEFCEHCVFGKLHRNKF 459
Query: 3217 STSTHKSSAPLDYVHCDLWGLEKVPTYGGNVYLLSIVDDFSRHVWVFLLKTKDQTFEKFC 3038
+ H++ LDY+H D WG +V + GG + +SI+DD+SR WV+++K K + F+KF
Sbjct: 460 PKAIHRTKGTLDYIHSDCWGPCRVESLGGCRFFVSIIDDYSRMTWVYMMKHKSEAFQKFK 519
Query: 3037 EWKRLAENQSRNKLITIKTDNGLEFCYRKFSNLCASHGILHHRTVKYNPQQNGVAERMNR 2858
EWK L ENQ+ K+ ++TDNGLEFC+ +F C GI HRTV+ PQQNGVAERMN+
Sbjct: 520 EWKILMENQTGKKIKRLRTDNGLEFCWSEFDQFCKDEGIARHRTVRNTPQQNGVAERMNQ 579
Query: 2857 TIMDKVRCLMVSLGVPKPFWGEAVSMAVSLID 2762
T++++ RC++ + G+ + FW EAVS A LI+
Sbjct: 580 TLLERARCMLSNAGLDRRFWAEAVSTACYLIN 611
Score = 158 bits (400), Expect(2) = e-127
Identities = 97/274 (35%), Positives = 149/274 (54%), Gaps = 3/274 (1%)
Frame = -1
Query: 2714 ANMSNLRVFGCVAFAHQKDGKLDPRSRKGVFRGYPSEVKGYRVWLKGEPGVRIVISRDVI 2535
A+ SNL+ FGC A+ H +GKL+PR++KGVF GY VKG+R+W E R+++SR+V+
Sbjct: 632 ADYSNLKAFGCTAYYHVSEGKLEPRAKKGVFVGYGDGVKGFRIWSPAEK--RVIMSRNVV 689
Query: 2534 FNE--LYMPFIKDKHISDSQPSAPTSGSIPVEVEVTSEPSLEPSQEPKTNEELVTXXXXX 2361
F+E L +K S++ GS+ +VE + +EP+ ++
Sbjct: 690 FDESPLLRTIVKPTTTSET-------GSLDKQVEFQVIQNESDLKEPEEEDQ-------- 734
Query: 2360 XXXXXXPETLEPVLEGFDKEVDHPETQAQALRDYQLVRDRVRRVS-KEYSRYGYSYIVSY 2184
EP E D PE+ + + +DR RRV + +RYG+ +V Y
Sbjct: 735 ----------EP-----QTETDIPESMPSDIHQ-SIAQDRPRRVGVRPPTRYGFEDMVGY 778
Query: 2183 AFAVASYVEEKESLCFSDVLESPNRSLWLCAIDEEMSSLNKNKTWILVPKPSKQKLVDCK 2004
A VA V+ E + + + S + W A+ +EM SL+KN+TW LV +PS +K++ CK
Sbjct: 779 ALQVAEEVDTSEPSTYKEAILSSDSEKWFAAMGDEMESLHKNQTWDLVIQPSGRKIITCK 838
Query: 2003 WNFKIKEPESANEPPRFKARPVAKGFSQVEGIRF 1902
W FK KE S E ++KAR VA+GF+Q EG+ +
Sbjct: 839 WVFKKKEGISPAEGVKYKARVVARGFNQREGVDY 872
Score = 222 bits (566), Expect(4) = e-112
Identities = 108/172 (62%), Positives = 136/172 (79%)
Frame = -2
Query: 1933 KAFHKLRAFDFNAIFSPVIKYKMIRIILALVSFYDLNLEQLDVKTAFLHGDLDETIYMCQ 1754
+ F++ D+N IFSPV+++ IR++LA+V+ +L LEQLDVKTAFLHG+L+E IYM Q
Sbjct: 862 RGFNQREGVDYNEIFSPVVRHTSIRVLLAIVAHQNLELEQLDVKTAFLHGELEEEIYMTQ 921
Query: 1753 PLGFEV*GKEHMTCLLKKSLYGLKQSPRQWSKRFDSFMLNVGFSKSSYDICLYFSGNNVD 1574
P GF+V GKE+ C LKKSLYGLKQSPRQW KRFDS+M+ +G+++SSYD C+Y++ N D
Sbjct: 922 PDGFQVPGKENHVCKLKKSLYGLKQSPRQWYKRFDSYMVKLGYTRSSYDCCVYYNRLNDD 981
Query: 1573 SVIYLLLYVDDMLIACKYKAKIDDLKSLLKSEFDMKDLGVASKILGMSIIRD 1418
S IYL+LYVDDMLIA K K I LK LL +EF+MKDLG A KILGM IIRD
Sbjct: 982 SFIYLVLYVDDMLIAAKKKYDIQKLKGLLSAEFEMKDLGAARKILGMEIIRD 1033
Score = 196 bits (497), Expect(4) = e-112
Identities = 99/214 (46%), Positives = 142/214 (66%)
Frame = -1
Query: 1409 RSLFLS*KPLLQKIFSKFSMYLCKPVITPLASHFKLSDKTCPKTENEKRDMANIPYRMAI 1230
R LFLS + +QK+ ++F M KP+ TP A++ L+ P++E EK M+ +PY A+
Sbjct: 1037 RKLFLSQRSYIQKVLARFGMSSSKPIDTPSAANIHLTAMFAPQSEEEKEYMSRVPYASAV 1096
Query: 1229 ASVMYSMISTRPDIAFSISLLSRFMSNPGRDHWAALKWLLHYLNGTLGRGLHYYNWSGVF 1050
S+MY+M+ TRPD+A ++S++SRFM PGR+HW A+K + YL GT GL Y
Sbjct: 1097 GSLMYAMVCTRPDLAHAVSVVSRFMGQPGREHWQAVKRIFRYLRGTSDVGL-IYGGDTQC 1155
Query: 1049 ELIGYVDSDFAGDKDGRKSTTSYFFTIAGNCVS*KSQLQPVVALSITEAEYIANMEAIEE 870
+ GY DSD+AGD D R+S T Y FT+ G+ VS K+ LQP V LS TEAEY+A EA +E
Sbjct: 1156 LVTGYSDSDYAGDVDTRRSMTGYVFTLGGSVVSWKATLQPTVTLSTTEAEYMALTEAAKE 1215
Query: 869 AIWLQKLLNELHVLHSKAIIYTDSQSSLHLCKNQ 768
IWL+ L+++L + H +A +Y DS S++ L K+Q
Sbjct: 1216 GIWLKGLVSDLGLHHDQATVYCDSLSAICLAKDQ 1249
Score = 33.1 bits (74), Expect(4) = e-112
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = -2
Query: 697 VDIDKISTDNNPADFGTKIVSSNKFMFCRDFL 602
+ + K+ T +NPAD TK V +KF C D L
Sbjct: 1271 IKVKKVGTADNPADMFTKPVPQSKFQHCLDLL 1302
Score = 29.3 bits (64), Expect(4) = e-112
Identities = 11/17 (64%), Positives = 15/17 (88%)
Frame = -3
Query: 768 VYHEWTKQIDVKYYFIR 718
V+HE TK IDV+Y+F+R
Sbjct: 1250 VHHERTKHIDVRYHFLR 1266
Score = 106 bits (264), Expect = 1e-19
Identities = 64/174 (36%), Positives = 101/174 (58%), Gaps = 3/174 (1%)
Frame = -1
Query: 4448 HSCLTLHLTDNVLREIDEKDNAFEIWTKLERLYLEKSLSNIIYLKEQLFGFKMSGSKTLS 4269
HS + L L D+V+ E+ +++ A +W KLE LY+ KSL+N + LK++LFG +M+ L
Sbjct: 57 HSTIMLCLADDVITEVSDEETAAGLWLKLESLYMTKSLTNKLLLKQRLFGLRMAEGTQLR 116
Query: 4268 ENMGDLNKIVLELQNVGEKISDENIAVILLNALPDSFNDVKYAIKYGRDDLSLSNVKNDL 4089
E++ LN ++LEL+N+ KI DE+ A+ILL +LP SF + + G+D +SL V++ L
Sbjct: 117 EHLEQLNTLLLELRNIDVKIEDEDAALILLVSLPMSFENFVQSFIVGKDTVSLEEVRSAL 176
Query: 4088 KSKDLDLQKENKS---HGENLFVRGRIDRTEPPSHRFKSRSKSQEKNKVKCFYC 3936
S++L + S LF R R + + K SK + + V C YC
Sbjct: 177 HSRELRHKANGTSTDIQPSGLFTSSRKGR-KNGGKKNKPMSKGAKPDDV-CNYC 228
>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group] gi|77548751|gb|ABA91548.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 2340
Score = 327 bits (838), Expect(2) = e-126
Identities = 157/341 (46%), Positives = 220/341 (64%), Gaps = 3/341 (0%)
Frame = -2
Query: 3775 CTDVVNLLVLDSGCSFHMTSNKHWFSDFKPLNQGKVFMGNN*VCDIKGIGNIFIKIHDGV 3596
C + +L++ C +HM N+ WF+ ++ + G V MG++ C++ GIG + IK+ DG
Sbjct: 500 CAQTSDQWILNTACIYHMCPNRDWFATYEAVQVGTVLMGDDTPCEVAGIGTVQIKMFDGC 559
Query: 3595 TRKLIEVRYVPNLHRNLISLSYLDSLGLSFKSKNGILLVCKGNLVMLKG-FKRETLYILL 3419
R L +VR++PNL R+LISL LD G + +GIL V KG+LV++K K LY L
Sbjct: 560 IRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLR 619
Query: 3418 GKTVCNSTALISKIVPKK--TMLWHQRIGHISEKGLYHLQKQNLLCGDKIDSLDFCDHCV 3245
G T+ + A +S + T LWH R+GH++E GL L K+ LL G I L FC+HC+
Sbjct: 620 GTTILGNVAAVSDSLSNSDATNLWHMRLGHMTEIGLAELSKRGLLDGQSIGKLKFCEHCI 679
Query: 3244 LGKQHKISFSTSTHKSSAPLDYVHCDLWGLEKVPTYGGNVYLLSIVDDFSRHVWVFLLKT 3065
GK ++ F+TSTH + LDYVH DLWG + ++GG Y+++IVDD+SR VW + LK
Sbjct: 680 FGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGTRYMMTIVDDYSRKVWPYFLKH 739
Query: 3064 KDQTFEKFCEWKRLAENQSRNKLITIKTDNGLEFCYRKFSNLCASHGILHHRTVKYNPQQ 2885
K Q F+ F EWK + E Q+ K+ ++TDNG+EFC + F + C S GI+ H TV + PQQ
Sbjct: 740 KYQAFDVFKEWKTMVERQTERKVKILRTDNGMEFCSKIFKSYCKSEGIVRHYTVPHTPQQ 799
Query: 2884 NGVAERMNRTIMDKVRCLMVSLGVPKPFWGEAVSMAVSLID 2762
NGVAERMNRTI+ K RCL+ + G+PK FW EAVS A LI+
Sbjct: 800 NGVAERMNRTIISKARCLLSNAGLPKQFWAEAVSTACYLIN 840
Score = 154 bits (389), Expect(2) = e-126
Identities = 99/273 (36%), Positives = 152/273 (55%), Gaps = 2/273 (0%)
Frame = -1
Query: 2714 ANMSNLRVFGCVAFAHQKDGKLDPRSRKGVFRGYPSEVKGYRVWLKGEPGVRIVISRDVI 2535
AN S+LRVFGC A+AH +GKL+PR+ K +F GYPS VKGY++W ++VISR+V+
Sbjct: 861 ANYSDLRVFGCTAYAHVDNGKLEPRAIKCIFLGYPSGVKGYKLWCPETK--KVVISRNVV 918
Query: 2534 FNELYMPFIKDKHISDSQPSAPTSGSIPVEVEVTSEPSLEPSQEPKTNEELVTXXXXXXX 2355
F+E M + DK ++ + S+ VE ++S + E ++ N++
Sbjct: 919 FHESVM--LHDKPSTNVPVESQEKASVQVEHLISSGHAPE-KEDVAINQD---------- 965
Query: 2354 XXXXPETLEPVLEGFDKEVDHPETQAQALRDYQLVRDRVRRVSKEYSRY-GYSYIVSYAF 2178
EPV+E + + Q + +DR +R K RY + IV+YA
Sbjct: 966 --------EPVIEDSNSSI------VQQSPKRSIAKDRPKRNIKPPQRYIEEANIVAYAL 1011
Query: 2177 AVASYVE-EKESLCFSDVLESPNRSLWLCAIDEEMSSLNKNKTWILVPKPSKQKLVDCKW 2001
+VA +E E +S+ + S + + W+ A+ +EM SL KN TW LV P ++K + CKW
Sbjct: 1012 SVAEEIEGNAEPSTYSEAIVSDDCNRWITAMHDEMESLEKNHTWELVKLPKEKKPIRCKW 1071
Query: 2000 NFKIKEPESANEPPRFKARPVAKGFSQVEGIRF 1902
FK KE S+++ R+KAR +AKG+SQ+ GI F
Sbjct: 1072 IFKRKEGISSSDEARYKARLIAKGYSQIPGIDF 1104
Score = 194 bits (492), Expect(3) = 1e-52
Identities = 98/212 (46%), Positives = 143/212 (67%)
Frame = -1
Query: 1403 LFLS*KPLLQKIFSKFSMYLCKPVITPLASHFKLSDKTCPKTENEKRDMANIPYRMAIAS 1224
L+LS K ++K+ +F+M+ KPV TPLA+HF+LS CP+++ + M+ +PY A+ S
Sbjct: 1270 LYLSQKGYIEKVLRRFNMHDAKPVSTPLAAHFRLSSDLCPQSDYDIEYMSRVPYSSAVGS 1329
Query: 1223 VMYSMISTRPDIAFSISLLSRFMSNPGRDHWAALKWLLHYLNGTLGRGLHYYNWSGVFEL 1044
+MY+M+ +RPD++ ++S++SR+M+NPG++HW A++W+ YL GT L + L
Sbjct: 1330 LMYAMVCSRPDLSHALSVVSRYMANPGKEHWKAVQWIFRYLRGTSSACLQFGRSRD--GL 1387
Query: 1043 IGYVDSDFAGDKDGRKSTTSYFFTIAGNCVS*KSQLQPVVALSITEAEYIANMEAIEEAI 864
+GYVDSDFAGD D +S Y FTI G VS K+ LQ VALS TEAEY+A EA +EAI
Sbjct: 1388 VGYVDSDFAGDLDRGRSLAGYVFTIGGCAVSWKASLQATVALSTTEAEYMAISEACKEAI 1447
Query: 863 WLQKLLNELHVLHSKAIIYTDSQSSLHLCKNQ 768
WL+ L L + S I+ DSQS++ L K+Q
Sbjct: 1448 WLRGLYTVLCAVTSCINIFCDSQSAICLTKDQ 1479
Score = 35.0 bits (79), Expect(3) = 1e-52
Identities = 19/44 (43%), Positives = 24/44 (54%)
Frame = -2
Query: 727 FY*GNVSNGVVDIDKISTDNNPADFGTKIVSSNKFMFCRDFLYL 596
F G ++ G V I KIS +NPAD TK V + KF C + L
Sbjct: 1494 FIRGLIAEGDVKICKISIHDNPADMMTKPVPATKFELCSSLVIL 1537
Score = 29.3 bits (64), Expect(3) = 1e-52
Identities = 11/17 (64%), Positives = 15/17 (88%)
Frame = -3
Query: 768 VYHEWTKQIDVKYYFIR 718
++HE TK IDV+Y+FIR
Sbjct: 1480 MFHERTKHIDVRYHFIR 1496
Score = 208 bits (530), Expect = 2e-50
Identities = 115/217 (52%), Positives = 150/217 (69%), Gaps = 5/217 (2%)
Frame = -2
Query: 1939 LQKAFHKLRAFDFNAIFSPVIKYKMIRIILALVSFYDLNLEQLDVKTAFLHGDLDETIYM 1760
+ K + ++ DFN +FSPV+K+ IR +L++V+ +D LEQ+DVKTAFLHG+L+E IYM
Sbjct: 1092 IAKGYSQIPGIDFNDVFSPVVKHSSIRTLLSIVAMHDYELEQMDVKTAFLHGELEEDIYM 1151
Query: 1759 CQPLGFEV*GKEHMTCLLKKSLYGLKQSPRQWSKRFDSFMLNVGFSKSSYDICLYFSGNN 1580
QP GF V GKE++ C LKKSLYGLKQSPRQW KRFDSFML+ F +S+YD C+Y +
Sbjct: 1152 EQPKGFVVPGKENLVCRLKKSLYGLKQSPRQWYKRFDSFMLSQKFRRSNYDSCVYLKVVD 1211
Query: 1579 VDSVIYLLLYVDDMLIACKYKAKIDDLKSLLKSEFDMKDLGVASKILGMSII--RDSLIV 1406
S IYLLLYVDDMLIA K K++I LK+ L SEF+MKDLG A KILGM I R S +
Sbjct: 1212 -GSAIYLLLYVDDMLIAAKDKSEIAKLKAQLSSEFEMKDLGAAKKILGMEITRKRHSFKL 1270
Query: 1405 HFS---YLRSPCFRKFSLNFLCICVSPL*PHLRAISN 1304
+ S Y+ R+F+++ +PL H R S+
Sbjct: 1271 YLSQKGYIEK-VLRRFNMHDAKPVSTPLAAHFRLSSD 1306
Score = 88.6 bits (218), Expect = 2e-14
Identities = 54/181 (29%), Positives = 102/181 (56%), Gaps = 11/181 (6%)
Frame = -1
Query: 4445 SCLTLHLTDNVLREIDEKDNAFEIWTKLERLYLEKSLSNIIYLKEQLFGFKMSGSKTLSE 4266
S + LHL++N+L+E+ +++ A +W KLE++ + K L++ ++LK+ LF K+ ++ +
Sbjct: 267 SYIHLHLSNNILQEVLKEEIAAGLWLKLEQICMTKDLTSKMHLKQTLFLHKLQDDGSVMD 326
Query: 4265 NMGDLNKIVLELQNVGEKISDENIAVILLNALPDSFNDVKYAIKYGRDDLSLSNVKNDL- 4089
++ +I+ +L+++ K +E++ +ILL +LP S+ + + I Y RD L+L V + L
Sbjct: 327 HLSAFKEIIADLESMEVKYDEEDLGLILLCSLPSSYANFRDTILYSRDTLTLKEVYDALH 386
Query: 4088 ---KSKDLDLQKENKSHGENLFVRGRIDR-------TEPPSHRFKSRSKSQEKNKVKCFY 3939
K K + + + S E L V GR + S ++ RSKS+ + K C Y
Sbjct: 387 VKEKMKKMVPSEGSNSQAEGLIVWGRQQEKNTKNQSRDKSSSSYRGRSKSRGRYK-SCKY 445
Query: 3938 C 3936
C
Sbjct: 446 C 446
>emb|CAN81238.1| hypothetical protein VITISV_031073 [Vitis vinifera]
Length = 1354
Score = 156 bits (395), Expect(5) = e-123
Identities = 91/229 (39%), Positives = 132/229 (57%), Gaps = 6/229 (2%)
Frame = -1
Query: 1412 DRS---LFLS*KPLLQKIFSKFSMYLCKPVITPLASHFKLSDKTCPKTENEKRDMANIPY 1242
DRS L LS + + K+ ++ M KP TP+A K S CPK E ++M IPY
Sbjct: 1069 DRSRGILGLSQRTYIDKVLQRYGMQNSKPGDTPVAKGDKFSLNQCPKNSLESQEMQKIPY 1128
Query: 1241 RMAIASVMYSMISTRPDIAFSISLLSRFMSNPGRDHWAALKWLLHYLNGTLGRGLHYYNW 1062
A+ S+MY+ + TRPDIA+ + +L R++SNPG DHW A K ++ YL T L Y
Sbjct: 1129 ASAVGSLMYAQVCTRPDIAYIVGMLGRYLSNPGMDHWRAAKRVMRYLQRTKEYMLTYRRL 1188
Query: 1061 SGVFELIGYVDSDFAGDKDGRKSTTSYFFTIAGNCVS*KSQLQPVVALSITEAEYIANME 882
+ ELIGY DSDFAG +D R+ST+ Y + +AG +S +S Q +V S EAE++A E
Sbjct: 1189 DQL-ELIGYSDSDFAGCQDSRRSTSGYIYLLAGGAISWRSAKQTLVTSSTMEAEFVACYE 1247
Query: 881 AIEEAIWLQKLLNELHVL---HSKAIIYTDSQSSLHLCKNQSTMNGQSK 744
A + IWL+ + L VL I+ D++S++ L N + + +SK
Sbjct: 1248 ASNQGIWLRNFVTGLRVLDGIERPLKIFCDNKSAV-LYSNNNRSSTKSK 1295
Score = 140 bits (352), Expect(5) = e-123
Identities = 98/372 (26%), Positives = 176/372 (47%), Gaps = 21/372 (5%)
Frame = -2
Query: 3814 MFSEVLCVSLSPSCTDVVNLLVLDSGCSFHM-TSNKHWFSDFKPLNQGK-VFMGNN*VCD 3641
MF ++C ++ + N LDSG + H+ S + S KP + + +++G+ +
Sbjct: 317 MFLTLVCSEVNLASVSR-NTWWLDSGATTHICVSMQGCLSYRKPSDAERCIYVGDGQSVE 375
Query: 3640 IKGIGNIFIKIHDGVTRKLIEVRYVPNLHRNLISLSYLDSLGLSFKSKNGILLVCKGNLV 3461
++ IG+ + + G LI+ VP+ +NLIS+S LD G N + +
Sbjct: 376 VEAIGHFRLLLKSGYFLDLIDTFIVPSFRQNLISVSVLDKSGYCCSFGNNKFTLSINSNA 435
Query: 3460 MLKGFKR--ETLYILLGKTVCNSTALISKIVPKKTM-------LWHQRIGHISEKGLYHL 3308
+ G + LY+L N T + K+ + LWH+R+GHIS+ + L
Sbjct: 436 VGTGLLNVYDNLYLLETVPSYNETLHVESRGTKRKLNKDNSASLWHKRLGHISKSRVERL 495
Query: 3307 QKQNLLCGDKIDSLDFCDHCVLGKQHKISFSTSTHKSSAPLDYVHCDLWGLEKVPTYGGN 3128
+L D C C+ GKQ K ++++ L+ +H D+ G ++ G
Sbjct: 496 VSDGILDSLDFSDFDICVECIKGKQTKTK-KLGANRATDVLELIHTDIXGPYPTASWNGQ 554
Query: 3127 VYLLSIVDDFSRHVWVFLLKTKDQTFEKFCEWKRLAENQSRNKLITIKTDNGLEFCYR-- 2954
Y ++ +DD+SR+ ++FL+ K Q+ + F +K E Q ++ ++++D G E+ R
Sbjct: 555 XYFITFIDDYSRYGYLFLIHEKSQSLDVFKTFKXEVELQLNKRIKSVRSDRGGEYYGRYD 614
Query: 2953 --------KFSNLCASHGILHHRTVKYNPQQNGVAERMNRTIMDKVRCLMVSLGVPKPFW 2798
F+ GI+ T+ +P NGVAER NR + D VR ++ +P+ W
Sbjct: 615 GSGEQHPGPFAKYLEECGIVPQYTMPGSPSMNGVAERRNRILKDMVRSMISHSTLPEKLW 674
Query: 2797 GEAVSMAVSLID 2762
GEA+ A +++
Sbjct: 675 GEALKTAAYILN 686
Score = 108 bits (271), Expect(5) = e-123
Identities = 59/128 (46%), Positives = 81/128 (63%), Gaps = 2/128 (1%)
Frame = -2
Query: 1795 FLHGDLDETIYMCQPLGFEV*GKEHMTCLLKKSLYGLKQSPRQWSKRFDSFMLNVGFSKS 1616
F +GD+DETIYM QP F ++M C L KS+YGLKQ+ RQW +F +++ GF +
Sbjct: 945 FSNGDIDETIYMVQPENFVSEDSKNMVCKLTKSIYGLKQASRQWYFKFHQIIVSYGFEAN 1004
Query: 1615 SYDICLY--FSGNNVDSVIYLLLYVDDMLIACKYKAKIDDLKSLLKSEFDMKDLGVASKI 1442
D C+Y FSG+ I+L+LYVDD+L+A + + D K L F+MKDLG AS +
Sbjct: 1005 LMDECVYHKFSGS---KYIFLVLYVDDILLATNDISILHDTKRFLSKHFEMKDLGDASFV 1061
Query: 1441 LGMSIIRD 1418
LG+ I RD
Sbjct: 1062 LGIQIHRD 1069
Score = 87.0 bits (214), Expect(5) = e-123
Identities = 75/275 (27%), Positives = 120/275 (43%), Gaps = 5/275 (1%)
Frame = -1
Query: 2711 NMSNLRVFGCVAFA-----HQKDGKLDPRSRKGVFRGYPSEVKGYRVWLKGEPGVRIVIS 2547
++ + ++GC A A H+K KLD ++ F GY +G++ + +P +R +
Sbjct: 707 SLKHFHIWGCPAEARPYKPHEK--KLDSKTVSSYFIGYAERSRGFKFY---DPAIRNQ-A 760
Query: 2546 RDVIFNELYMPFIKDKHISDSQPSAPTSGSIPVEVEVTSEPSLEPSQEPKTNEELVTXXX 2367
R+++F E I ++ S P I EV + +P+ Q NE++
Sbjct: 761 RNIVFEEEEGSTIAFDNVQVSLPI------IDQEVNLDPQPTDNIVQPLIANEDIAP--- 811
Query: 2366 XXXXXXXXPETLEPVLEGFDKEVDHPETQAQALRDYQLVRDRVRRVSKEYSRYGYSYIVS 2187
+++ P+ R R+R +S +Y Y
Sbjct: 812 -------------------EEQTQQPQENMSLRRS---TRERRNAISDDYIVYLQER--- 846
Query: 2186 YAFAVASYVEEKESLCFSDVLESPNRSLWLCAIDEEMSSLNKNKTWILVPKPSKQKLVDC 2007
V S + E + + F ++S N W+ A++EE S+ NK W LVP P K + C
Sbjct: 847 ---EVESGMMEDDPINFQQAMKSSNSQKWIEAMNEEYKSMQDNKVWELVPLPVGTKPIGC 903
Query: 2006 KWNFKIKEPESANEPPRFKARPVAKGFSQVEGIRF 1902
KW FK K + N R+KAR VAKGF+Q EGI F
Sbjct: 904 KWIFKTKRDSNGN-VERYKARLVAKGFTQKEGIDF 937
Score = 44.7 bits (104), Expect(5) = e-123
Identities = 33/168 (19%), Positives = 74/168 (44%), Gaps = 11/168 (6%)
Frame = -1
Query: 4400 DEKDNAFEIWTKLERLYLEKSLSNIIYLKEQLFGFKMSGSKTLSENMGDLNKIVLELQNV 4221
DE NA + ++++ + + + L L K G + E + +++ + +L+ +
Sbjct: 138 DEVTNASDFLAEIQKRFAKNDKAETSTLLASLISMKYKGKGNVREYIMEMSHLASKLKAL 197
Query: 4220 GEKISDENIAVILLNALPDSFNDVKYAIKYGRDDLSLS-----------NVKNDLKSKDL 4074
++SD+ + ++L +LP FN K + +D +L+ +K D K++
Sbjct: 198 KLELSDDLLVHLVLISLPAQFNQFKVSYNCQKDKWTLNELISFCVQEEERLKQD-KTESA 256
Query: 4073 DLQKENKSHGENLFVRGRIDRTEPPSHRFKSRSKSQEKNKVKCFYCGK 3930
L +K G+ ++ + P + ++K +V CF+C K
Sbjct: 257 HLASTSKDKGKRKNKDNKVAASNGPEQK-------KQKVEVTCFFCNK 297
>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1241
Score = 326 bits (836), Expect(2) = e-123
Identities = 156/341 (45%), Positives = 220/341 (64%), Gaps = 3/341 (0%)
Frame = -2
Query: 3775 CTDVVNLLVLDSGCSFHMTSNKHWFSDFKPLNQGKVFMGNN*VCDIKGIGNIFIKIHDGV 3596
C + +LD+ C++HM N+ WF+ ++ + G V MG++ C++ GIG + IK+ DG
Sbjct: 202 CAQTSDQWILDTACTYHMCPNRDWFATYEAVQGGTVLMGDDTPCEVAGIGTVQIKMFDGC 261
Query: 3595 TRKLIEVRYVPNLHRNLISLSYLDSLGLSFKSKNGILLVCKGNLVMLKG-FKRETLYILL 3419
R L++VR++PNL R+LISL LD G + +GIL V KG+LV++K K LY L
Sbjct: 262 IRTLLDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKYANLYHLR 321
Query: 3418 GKTVCNSTALISKIVPKK--TMLWHQRIGHISEKGLYHLQKQNLLCGDKIDSLDFCDHCV 3245
G T+ + A +S + T LWH R+GH+SE GL L K+ LL G I L FC+HC+
Sbjct: 322 GTTILGNVAAVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRGLLDGQSIGKLKFCEHCI 381
Query: 3244 LGKQHKISFSTSTHKSSAPLDYVHCDLWGLEKVPTYGGNVYLLSIVDDFSRHVWVFLLKT 3065
GK ++ F+TSTH + LDYVH DLWG + ++GG Y+++IVDD+SR VW + LK
Sbjct: 382 FGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGARYMMTIVDDYSRKVWPYFLKH 441
Query: 3064 KDQTFEKFCEWKRLAENQSRNKLITIKTDNGLEFCYRKFSNLCASHGILHHRTVKYNPQQ 2885
K Q F+ F EWK + E Q+ K+ ++TDNG+E C + F + C S GI+ H TV + PQQ
Sbjct: 442 KYQAFDVFKEWKTMVERQTERKVKILRTDNGMELCSKIFKSYCKSEGIVRHYTVPHTPQQ 501
Query: 2884 NGVAERMNRTIMDKVRCLMVSLGVPKPFWGEAVSMAVSLID 2762
NGVAERMNRTI+ K RC++ + +PK FW EAVS A LI+
Sbjct: 502 NGVAERMNRTIISKARCMLSNASLPKQFWAEAVSTACYLIN 542
Score = 146 bits (368), Expect(2) = e-123
Identities = 98/273 (35%), Positives = 148/273 (54%), Gaps = 2/273 (0%)
Frame = -1
Query: 2714 ANMSNLRVFGCVAFAHQKDGKLDPRSRKGVFRGYPSEVKGYRVWLKGEPGVRIVISRDVI 2535
AN S+LRVFGC A+AH +GKL+PR K +F GY S VKGY++W ++VISR+V+
Sbjct: 563 ANYSDLRVFGCTAYAHVDNGKLEPRVIKCIFLGYLSGVKGYKLWCPETK--KVVISRNVV 620
Query: 2534 FNELYMPFIKDKHISDSQPSAPTSGSIPVEVEVTSEPSLEPSQEPKTNEELVTXXXXXXX 2355
F+E M + DK ++ + S+ VE ++S + E ++ N++
Sbjct: 621 FHESIM--LHDKPSTNVPVESQEKVSVQVEHLISSGHAPE-KEDVAINQDA--------- 668
Query: 2354 XXXXPETLEPVLEGFDKEVDHPETQAQALRDYQLVRDRVRRVSKEYSRY-GYSYIVSYAF 2178
PV+E D + Q + +DR +R +K RY + IV+YA
Sbjct: 669 ---------PVIEDSDSSI------VQQSPKRSIAKDRPKRNTKPPRRYIEEANIVAYAL 713
Query: 2177 AVASYVE-EKESLCFSDVLESPNRSLWLCAIDEEMSSLNKNKTWILVPKPSKQKLVDCKW 2001
+VA +E E +SD + S + + W+ A+ +EM SL KN +W L P ++K + CKW
Sbjct: 714 SVAEEIEGNAEPSTYSDAIVSDDCNRWITAMHDEMESLEKNHSWELEKLPKEKKPIRCKW 773
Query: 2000 NFKIKEPESANEPPRFKARPVAKGFSQVEGIRF 1902
FK KE S ++ R+KAR VAKG+SQ+ GI F
Sbjct: 774 IFKRKEGMSPSDEARYKARLVAKGYSQIPGIDF 806
Score = 207 bits (528), Expect(4) = e-107
Identities = 105/172 (61%), Positives = 131/172 (76%)
Frame = -2
Query: 1933 KAFHKLRAFDFNAIFSPVIKYKMIRIILALVSFYDLNLEQLDVKTAFLHGDLDETIYMCQ 1754
K + ++ DFN +FSPV+K+ IR +L++V+ +D LEQ+DVKTAFLHG+L+E IYM Q
Sbjct: 796 KGYSQIPGIDFNDVFSPVVKHSSIRTLLSIVAMHDYELEQMDVKTAFLHGELEEDIYMEQ 855
Query: 1753 PLGFEV*GKEHMTCLLKKSLYGLKQSPRQWSKRFDSFMLNVGFSKSSYDICLYFSGNNVD 1574
P GF V GKE++ C LKKSLYGLKQSPRQW KRFDSFML+ F +S+YD C+Y +
Sbjct: 856 PEGFVVPGKENLVCRLKKSLYGLKQSPRQWYKRFDSFMLSQKFRRSNYDSCVYLKVVD-G 914
Query: 1573 SVIYLLLYVDDMLIACKYKAKIDDLKSLLKSEFDMKDLGVASKILGMSIIRD 1418
S IYLLLYVDDMLIA K K++I LK+ L SEF+MKDLG A KILGM I R+
Sbjct: 915 SAIYLLLYVDDMLIAAKDKSEIAKLKAQLSSEFEMKDLGAAKKILGMEITRE 966
Score = 191 bits (485), Expect(4) = e-107
Identities = 98/212 (46%), Positives = 144/212 (67%)
Frame = -1
Query: 1403 LFLS*KPLLQKIFSKFSMYLCKPVITPLASHFKLSDKTCPKTENEKRDMANIPYRMAIAS 1224
L+LS K ++K+ +F+M+ K V T LA+HF+LS CP++ + M+ +PY A++S
Sbjct: 972 LYLSQKCYIEKVLHRFNMHDAKLVSTLLAAHFRLSSDLCPQSAYDIEYMSRVPYSSAVSS 1031
Query: 1223 VMYSMISTRPDIAFSISLLSRFMSNPGRDHWAALKWLLHYLNGTLGRGLHYYNWSGVFEL 1044
+MY+M+ +RPD++ ++S++SR+M+NPG++HW A++W+ YL GT L + S L
Sbjct: 1032 LMYAMVCSRPDLSHALSVVSRYMANPGKEHWKAVQWIFRYLRGTSSACLQFGRSSD--GL 1089
Query: 1043 IGYVDSDFAGDKDGRKSTTSYFFTIAGNCVS*KSQLQPVVALSITEAEYIANMEAIEEAI 864
+GYVDSDFAGD D R+S T Y FT+ G VS K+ LQ VALS TEAEY+A EA +E I
Sbjct: 1090 VGYVDSDFAGDLDRRRSLTGYVFTVGGCAVSWKASLQATVALSTTEAEYMAISEACKEVI 1149
Query: 863 WLQKLLNELHVLHSKAIIYTDSQSSLHLCKNQ 768
WL+ L EL + S I+ DSQS++ L K+Q
Sbjct: 1150 WLRGLYTELCGVTSCINIFCDSQSAICLTKDQ 1181
Score = 34.3 bits (77), Expect(4) = e-107
Identities = 17/38 (44%), Positives = 22/38 (57%)
Frame = -2
Query: 727 FY*GNVSNGVVDIDKISTDNNPADFGTKIVSSNKFMFC 614
F G ++ G V + KIST +NP D TK V + KF C
Sbjct: 1196 FIRGVIAEGDVKVCKISTHDNPVDMMTKPVPATKFELC 1233
Score = 28.1 bits (61), Expect(4) = e-107
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = -3
Query: 768 VYHEWTKQIDVKYYFIR 718
++HE TK ID++Y+FIR
Sbjct: 1182 MFHERTKHIDLRYHFIR 1198
Score = 66.2 bits (160), Expect = 1e-07
Identities = 44/149 (29%), Positives = 80/149 (53%), Gaps = 11/149 (7%)
Frame = -1
Query: 4349 LEKSLSNIIYLKEQLFGFKMSGSKTLSENMGDLNKIVLELQNVGEKISDENIAVILLNAL 4170
+ K L++ ++LK++LF K+ ++ +++ +IV +L+++ K +E++ +ILL +L
Sbjct: 1 MTKDLTSKMHLKQKLFLHKLQDDGSVMDHLSAFKEIVADLESMEVKYDEEDLGLILLCSL 60
Query: 4169 PDSFNDVKYAIKYGRDDLSLSNVKNDL----KSKDLDLQKENKSHGENLFVRGRIDR--- 4011
P S+ + + I Y RD L+L V + L K K + + + S E L VRGR
Sbjct: 61 PSSYANFRDTILYSRDTLTLKEVYDALHAKEKMKKMVPSEGSNSQAEGLVVRGRQQEKNT 120
Query: 4010 ----TEPPSHRFKSRSKSQEKNKVKCFYC 3936
+ S ++ RSKS+ + K C YC
Sbjct: 121 NNKSRDKSSSIYRGRSKSRGRYK-SCKYC 148
>gb|AFB73912.1| polyprotein [Citrus sinensis]
Length = 1309
Score = 275 bits (704), Expect(4) = e-123
Identities = 141/356 (39%), Positives = 217/356 (60%), Gaps = 1/356 (0%)
Frame = -2
Query: 3826 DGNSMFSEVLCVSLSPSCTDVVNLLVLDSGCSFHMTSNKHWFSDFKPLNQGKVFMGNN*V 3647
DG ++SE VS + ++ ++DSG ++HMTS + WF ++P++ G V+MGN+
Sbjct: 270 DGEILYSEATIVSEGRK--RLSDVWLIDSGATWHMTSRREWFHTYEPISGGSVYMGNDHA 327
Query: 3646 CDIKGIGNIFIKIHDGVTRKLIEVRYVPNLHRNLISLSYLDSLGLSFKSKNGILLVCKGN 3467
+I GIG I IK+ DG R + EVR+V L +NL+SL +DS G +NGI+ + KG
Sbjct: 328 LEIAGIGTIKIKMFDGTIRTIEEVRHVNGLKKNLLSLGQMDSHGCKTHVENGIMKIVKGA 387
Query: 3466 LVMLKGFKR-ETLYILLGKTVCNSTALISKIVPKKTMLWHQRIGHISEKGLYHLQKQNLL 3290
LV++K K L++L G+T+ + A ++ + TM+WH ++GH+SE+GL L ++ L
Sbjct: 388 LVLMKAEKICANLFMLKGETLQEADACVASNGEESTMMWHLKLGHMSEQGLKILSERKLP 447
Query: 3289 CGDKIDSLDFCDHCVLGKQHKISFSTSTHKSSAPLDYVHCDLWGLEKVPTYGGNVYLLSI 3110
G K SL FC+HCV KQH++ FS S +S LD +H D+W + + GG Y+++
Sbjct: 448 PGLKSVSLPFCEHCVTSKQHRLKFSRSIARSKCILDLIHSDVWESPDI-SMGGAKYMVTF 506
Query: 3109 VDDFSRHVWVFLLKTKDQTFEKFCEWKRLAENQSRNKLITIKTDNGLEFCYRKFSNLCAS 2930
+DD+SR WV+ +K K F F E+K E +S K+ ++TDNG E+ +F C
Sbjct: 507 IDDYSRRCWVYPIKKKSDVFPVFKEYKAWVELESGKKIKCLRTDNGGEYTDSEFLAFCKQ 566
Query: 2929 HGILHHRTVKYNPQQNGVAERMNRTIMDKVRCLMVSLGVPKPFWGEAVSMAVSLID 2762
GI TV Y PQQNGVAERMNRT+ +++R ++ + G+P FW EA A +++
Sbjct: 567 EGIQRQFTVAYTPQQNGVAERMNRTLTERIRAMLRTAGLPNSFWAEAAKTACYIVN 622
Score = 120 bits (300), Expect(4) = e-123
Identities = 95/275 (34%), Positives = 132/275 (48%), Gaps = 4/275 (1%)
Frame = -1
Query: 2714 ANMSNLRVFGC---VAFAHQKDGKLDPRSRKGVFRGYPSEVKGYRVWLKGEPGV-RIVIS 2547
A+ S L FGC V + Q+ KLDP+SRK +F GY VKGYR+W +P +IVIS
Sbjct: 643 ADYSYLHAFGCPVYVMYNAQERTKLDPKSRKCIFLGYADGVKGYRLW---DPTAHKIVIS 699
Query: 2546 RDVIFNELYMPFIKDKHISDSQPSAPTSGSIPVEVEVTSEPSLEPSQEPKTNEELVTXXX 2367
RDVIF E + + D S ++PV VE E S P+ E+
Sbjct: 700 RDVIFVEDQL----QRKDGDDGTVKEKSETVPVYVENNPENSDSSEAAPEHEEQ------ 749
Query: 2366 XXXXXXXXPETLEPVLEGFDKEVDHPETQAQALRDYQLVRDRVRRVSKEYSRYGYSYIVS 2187
EPV E + PE + R RR +S Y V+
Sbjct: 750 ------------EPV------ESEAPEVRRST---------RERRPPTWHSEYVTEINVA 782
Query: 2186 YAFAVASYVEEKESLCFSDVLESPNRSLWLCAIDEEMSSLNKNKTWILVPKPSKQKLVDC 2007
Y E+ E F + L S + +LW+ A+ EE+ +L+KNKTW LVP P +K +
Sbjct: 783 YCLLT----EDGEPSTFHEALNSLDVALWMTAMQEEIEALHKNKTWELVPLPHGRKAIGN 838
Query: 2006 KWNFKIKEPESANEPPRFKARPVAKGFSQVEGIRF 1902
KW +KIK + ++ R++AR V KG++Q EGI F
Sbjct: 839 KWVYKIKR-DGNDQVERYRARLVVKGYAQKEGIDF 872
Score = 96.7 bits (239), Expect(4) = e-123
Identities = 59/180 (32%), Positives = 95/180 (52%), Gaps = 8/180 (4%)
Frame = -1
Query: 4445 SCLTLHLTDNVLREIDEKDNAFEIWTKLERLYLEKSLSNIIYLKEQLFGFKMSGSKTLSE 4266
S L L L D VL + EK+ A EIW L +LY KSL N I+LK +L+ +M+ S +++
Sbjct: 56 SDLHLALADGVLSSVAEKNTAKEIWDTLTKLYEAKSLHNKIFLKRKLYTLRMAESTMVTD 115
Query: 4265 NMGDLNKIVLELQNVGEKISDENIAVILLNALPDSFNDVKYAIKYGR-------DDLSLS 4107
++ L + +L +G I + A +LL +LPDS++ + + DD++ S
Sbjct: 116 HINTLKTLFSQLTTLGHNIEENERAELLLQSLPDSYDQLIINLTNNNPVDSLVFDDVAAS 175
Query: 4106 NVKNDLKSKDLDLQKENKSHGENLFV-RGRIDRTEPPSHRFKSRSKSQEKNKVKCFYCGK 3930
+ + + K+ + ++ + E L V RGR P + RSKS+ K VKC+ CGK
Sbjct: 176 VLNEESRRKNKENRQASSQQAEALSVTRGRSTERGPSGSQNHGRSKSRSKKNVKCYNCGK 235
Score = 23.1 bits (48), Expect(4) = e-123
Identities = 7/17 (41%), Positives = 12/17 (70%)
Frame = -3
Query: 2763 TPFTAVNFRTLIELWCG 2713
+P TA+ +T +E+W G
Sbjct: 624 SPSTAIGLKTAMEMWTG 640
Score = 212 bits (540), Expect(4) = e-108
Identities = 108/215 (50%), Positives = 148/215 (68%)
Frame = -1
Query: 1415 SDRSLFLS*KPLLQKIFSKFSMYLCKPVITPLASHFKLSDKTCPKTENEKRDMANIPYRM 1236
++R ++LS K L+KI +F+M CK + TPL +FKLS CP E E+++M+ +PY
Sbjct: 1035 NNRKIWLSQKNYLKKILRRFNMQDCKSISTPLPVNFKLSSSMCPSNEAERKEMSRVPYAS 1094
Query: 1235 AIASVMYSMISTRPDIAFSISLLSRFMSNPGRDHWAALKWLLHYLNGTLGRGLHYYNWSG 1056
A+ S+M++MI TRPDIA ++ +SR+M+NPG +HW A+K +L Y+ GT L Y
Sbjct: 1095 AVGSLMFAMICTRPDIAQAVGAVSRYMANPGGEHWIAVKRILRYIRGTSNVALCY--GGS 1152
Query: 1055 VFELIGYVDSDFAGDKDGRKSTTSYFFTIAGNCVS*KSQLQPVVALSITEAEYIANMEAI 876
F + GYVDSDFAGD D RKSTT Y FT+AG VS S+LQ VVALS TEAEY+A +A
Sbjct: 1153 EFTVRGYVDSDFAGDLDKRKSTTGYVFTLAGAAVSWVSKLQTVVALSTTEAEYMAATQAC 1212
Query: 875 EEAIWLQKLLNELHVLHSKAIIYTDSQSSLHLCKN 771
+EAIW+Q+LL EL K ++ DSQS+LH+ +N
Sbjct: 1213 KEAIWIQRLLEELGHKQQKIPVFCDSQSALHIARN 1247
Score = 193 bits (491), Expect(4) = e-108
Identities = 96/172 (55%), Positives = 126/172 (73%)
Frame = -2
Query: 1933 KAFHKLRAFDFNAIFSPVIKYKMIRIILALVSFYDLNLEQLDVKTAFLHGDLDETIYMCQ 1754
K + + DFN IFSPV++ +RI+LA+ + +DL+LEQLDVKTAFLHG+L+E IYM Q
Sbjct: 862 KGYAQKEGIDFNEIFSPVVRLTTVRIVLAMCATFDLHLEQLDVKTAFLHGELEEEIYMLQ 921
Query: 1753 PLGFEV*GKEHMTCLLKKSLYGLKQSPRQWSKRFDSFMLNVGFSKSSYDICLYFSGNNVD 1574
P GF GKE++ C L KSLYGLKQ+PR W KRFDSF++++G+++ S D C Y+ +
Sbjct: 922 PEGFAETGKENLVCRLNKSLYGLKQAPRCWYKRFDSFIMSLGYNRLSSDHCAYYKRFEDN 981
Query: 1573 SVIYLLLYVDDMLIACKYKAKIDDLKSLLKSEFDMKDLGVASKILGMSIIRD 1418
I LLLYVDDML+A K +I +LK+ L EF+MKDLG A+KILGM I RD
Sbjct: 982 DFIILLLYVDDMLVAGPNKDRIQELKAQLAREFEMKDLGPANKILGMQIHRD 1033
Score = 32.3 bits (72), Expect(4) = e-108
Identities = 15/34 (44%), Positives = 23/34 (67%)
Frame = -2
Query: 712 VSNGVVDIDKISTDNNPADFGTKIVSSNKFMFCR 611
V +G VD+ KI T N AD TK ++++KF++ R
Sbjct: 1268 VEDGSVDLQKIHTKENLADVLTKSINTDKFVWSR 1301
Score = 25.8 bits (55), Expect(4) = e-108
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = -3
Query: 765 YHEWTKQIDVKYYFIREM 712
+H TK I V+Y+F+RE+
Sbjct: 1250 FHSRTKHIGVQYHFVREV 1267
>gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 288 bits (737), Expect(4) = e-123
Identities = 145/357 (40%), Positives = 228/357 (63%), Gaps = 2/357 (0%)
Frame = -2
Query: 3826 DGNSMFSEVLCVSLSPSCTDVVNLLVLDSGCSFHMTSNKHWFSDFKPLNQGKVFMGNN*V 3647
DG ++SE S + ++ ++DSG ++HMT ++ WF ++P+++G V+MGN+
Sbjct: 269 DGEILYSEAATSSKGERRLN--DVWIMDSGATWHMTPHRDWFFSYEPISEGSVYMGNDHA 326
Query: 3646 CDIKGIGNIFIKIHDGVTRKLIEVRYVPNLHRNLISLSYLDSLGLSFKSKNGILLVCKGN 3467
+I G+G I +K+HDG RK+ VR+V L +NL+S+ LD LG +++GIL V KGN
Sbjct: 327 LEIAGVGTIRLKMHDGTVRKIQGVRHVKGLKKNLLSVGQLDDLGCKIHTESGILKVVKGN 386
Query: 3466 LVMLKGFK-RETLYILLGKTVCNSTALISKIVPKKT-MLWHQRIGHISEKGLYHLQKQNL 3293
LV++K K LY+LLG T+ + A ++ ++T M+WHQR+GH+SE+GL L ++NL
Sbjct: 387 LVVMKAEKITSNLYMLLGDTLQEADASVAASSQEETTMMWHQRLGHMSERGLKVLAERNL 446
Query: 3292 LCGDKIDSLDFCDHCVLGKQHKISFSTSTHKSSAPLDYVHCDLWGLEKVPTYGGNVYLLS 3113
L G K +L FC+HCV+ KQH++ F+ T +S LD +H D+W ++ + GG Y +S
Sbjct: 447 LHGLKAVNLPFCEHCVISKQHRLKFARVTTRSKHILDLIHSDVWESPEI-SLGGARYFVS 505
Query: 3112 IVDDFSRHVWVFLLKTKDQTFEKFCEWKRLAENQSRNKLITIKTDNGLEFCYRKFSNLCA 2933
+DD+SR +WV+ +K K F F +K E ++R K+ ++TDNG E+ +F C
Sbjct: 506 FIDDYSRRLWVYPIKKKSDVFPVFKAFKAQIELETRKKIKCLRTDNGGEYIDGEFLAFCK 565
Query: 2932 SHGILHHRTVKYNPQQNGVAERMNRTIMDKVRCLMVSLGVPKPFWGEAVSMAVSLID 2762
GI+ TV + PQQNGVAERMNRT++++ R ++ + G+ K FW EAV A +I+
Sbjct: 566 QEGIVRQFTVAHTPQQNGVAERMNRTLLERTRAMLKTAGMAKSFWAEAVKTACYVIN 622
Score = 113 bits (282), Expect(4) = e-123
Identities = 86/274 (31%), Positives = 134/274 (48%), Gaps = 6/274 (2%)
Frame = -1
Query: 2705 SNLRVFGC---VAFAHQKDGKLDPRSRKGVFRGYPSEVKGYRVWLKGEPGVR-IVISRDV 2538
S+L VFGC V + Q+ KLDP+SRK +F GY VKGYR+W +P R +V+SRDV
Sbjct: 646 SSLHVFGCPVYVMYNSQERTKLDPKSRKCIFLGYADNVKGYRLW---DPTARKVVVSRDV 702
Query: 2537 IFNELYMPFIKDKHISDSQPSAPTSGSIPVEVEVTSEPSLEPSQEPKTNEELVTXXXXXX 2358
+F E + S+ + + + + V++E S+ S + S+ +EE
Sbjct: 703 VFAENELQ-------SEQKNDSTSKETAIVQMEEKSKES-DSSEAESVHEE--------- 745
Query: 2357 XXXXXPETLEPVLEGFDKEVDHPETQAQALRDYQLVRDRVRRVSKEYSRYGYS--YIVSY 2184
+E D V D VRR +++ + + Y+++
Sbjct: 746 -----------------QEPDD-------------VNDGVRRSTRQTQKPSWQSDYVMTS 775
Query: 2183 AFAVASYVEEKESLCFSDVLESPNRSLWLCAIDEEMSSLNKNKTWILVPKPSKQKLVDCK 2004
A EE E F + L + S W+ A+ EEM +L++NKTW LV P +K + K
Sbjct: 776 HDAYCLITEEGEPSTFHEALNGSDASQWMTAMHEEMEALHRNKTWELVELPKGRKAIGNK 835
Query: 2003 WNFKIKEPESANEPPRFKARPVAKGFSQVEGIRF 1902
W +KIK + ++ R++AR V KG++Q EGI F
Sbjct: 836 WVYKIKR-DGNDQVERYRARLVVKGYAQKEGIDF 868
Score = 90.9 bits (224), Expect(4) = e-123
Identities = 57/177 (32%), Positives = 94/177 (53%), Gaps = 8/177 (4%)
Frame = -1
Query: 4439 LTLHLTDNVLREIDEKDNAFEIWTKLERLYLEKSLSNIIYLKEQLFGFKMSGSKTLSENM 4260
L L + D+VL I EK A EIW L +LY KSL N I+LK +L+ +M S ++++++
Sbjct: 58 LHLAMADSVLSSIAEKKTAKEIWDTLIKLYEVKSLHNRIFLKRRLYTLRMGESTSVTDHI 117
Query: 4259 GDLNKIVLELQNVGEKISDENIAVILLNALPDSFNDVKYAIKYGR-------DDLSLSNV 4101
LN + +L KI++ A +LL +LPDS++ + I DD++ + +
Sbjct: 118 NTLNTLFSQLTASDFKIAENERAELLLQSLPDSYDQLIINITNNNITDTLHFDDVAGAIL 177
Query: 4100 KNDLKSKDLDLQKENKSHGENL-FVRGRIDRTEPPSHRFKSRSKSQEKNKVKCFYCG 3933
+ + + K+ + + E+ E L RGR P + RSKS+ K +KC+ CG
Sbjct: 178 EEESRRKNKEERSESSKQAEALTMTRGRSTERGPSGSQNHGRSKSRRKKNIKCYGCG 234
Score = 22.7 bits (47), Expect(4) = e-123
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -3
Query: 2763 TPFTAVNFRTLIELWCG*HVQPKSFWMCG 2677
+P TA++ +T +E+W G V S + G
Sbjct: 624 SPSTAIDLKTPMEMWKGKPVDYSSLHVFG 652
Score = 209 bits (532), Expect(4) = e-107
Identities = 107/216 (49%), Positives = 149/216 (68%), Gaps = 2/216 (0%)
Frame = -1
Query: 1412 DRSLFLS*KPLLQKIFSKFSMYLCKPVITPLASHFKLSDKTCPKTENEKRDMANIPYRMA 1233
D ++LS K L+K+ +F+M CKP+ TPL +FKLS P E E+ +M+ +PY A
Sbjct: 1032 DMKIWLSQKNYLRKVLRRFNMQDCKPISTPLPVNFKLSSGMSPSNEAERMEMSRVPYASA 1091
Query: 1232 IASVMYSMISTRPDIAFSISLLSRFMSNPGRDHWAALKWLLHYLNGTLGRGLHYYNWSGV 1053
+ S+MY+MI TRPDIA ++ ++SRFM++PG++HW A+K ++ Y+ GT G + + G
Sbjct: 1092 VGSLMYAMICTRPDIAQAVGVVSRFMADPGKEHWNAVKRIMRYIKGTSGVAVCF----GG 1147
Query: 1052 FELI--GYVDSDFAGDKDGRKSTTSYFFTIAGNCVS*KSQLQPVVALSITEAEYIANMEA 879
EL GYVDSDFAGD D RKSTT Y FT+AG VS S+LQ VVALS TEAEY+A +A
Sbjct: 1148 SELTVRGYVDSDFAGDHDKRKSTTGYVFTLAGGAVSWLSKLQTVVALSTTEAEYMAATQA 1207
Query: 878 IEEAIWLQKLLNELHVLHSKAIIYTDSQSSLHLCKN 771
+EAIW+Q+L+ EL + +Y DSQS+LH+ +N
Sbjct: 1208 CKEAIWMQRLMEELGHKQEQITVYCDSQSALHIARN 1243
Score = 191 bits (484), Expect(4) = e-107
Identities = 95/172 (55%), Positives = 125/172 (72%)
Frame = -2
Query: 1933 KAFHKLRAFDFNAIFSPVIKYKMIRIILALVSFYDLNLEQLDVKTAFLHGDLDETIYMCQ 1754
K + + DFN IFSPV++ IR++LA+ + DL+LEQLDVKTAFLHG+L+E IYM Q
Sbjct: 858 KGYAQKEGIDFNEIFSPVVRLTTIRVVLAMCAALDLHLEQLDVKTAFLHGELEEEIYMLQ 917
Query: 1753 PLGFEV*GKEHMTCLLKKSLYGLKQSPRQWSKRFDSFMLNVGFSKSSYDICLYFSGNNVD 1574
P GF+ GKE++ C L KSLYGLKQ+PR W KRFDSF++++ +S+ S D C Y+ + +
Sbjct: 918 PEGFKEQGKENLVCRLTKSLYGLKQAPRCWYKRFDSFIISLDYSRLSSDHCTYYKRFDGN 977
Query: 1573 SVIYLLLYVDDMLIACKYKAKIDDLKSLLKSEFDMKDLGVASKILGMSIIRD 1418
I LLLYVDDML+ K ++ +LK+ L EFDMKDLG A+KILGM I RD
Sbjct: 978 DFIILLLYVDDMLVVGPNKDRVQELKAQLAREFDMKDLGPANKILGMQIHRD 1029
Score = 36.6 bits (83), Expect(4) = e-107
Identities = 16/34 (47%), Positives = 25/34 (73%)
Frame = -2
Query: 712 VSNGVVDIDKISTDNNPADFGTKIVSSNKFMFCR 611
V G VD+ KI T++N AD TK ++++KF++CR
Sbjct: 1264 VEEGSVDMQKIHTNDNLADVMTKPINADKFVWCR 1297
Score = 25.8 bits (55), Expect(4) = e-107
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = -3
Query: 765 YHEWTKQIDVKYYFIREM 712
+H TK I V+Y+F+RE+
Sbjct: 1246 FHSRTKHIGVQYHFVREV 1263
>gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 285 bits (728), Expect(4) = e-122
Identities = 144/357 (40%), Positives = 227/357 (63%), Gaps = 2/357 (0%)
Frame = -2
Query: 3826 DGNSMFSEVLCVSLSPSCTDVVNLLVLDSGCSFHMTSNKHWFSDFKPLNQGKVFMGNN*V 3647
DG ++SE S + ++ ++DSG ++HMT ++ WF ++P+++G V+MGN+
Sbjct: 269 DGEILYSEAATSSKGERRLN--DVWIMDSGATWHMTPHRDWFFSYEPISEGSVYMGNDHA 326
Query: 3646 CDIKGIGNIFIKIHDGVTRKLIEVRYVPNLHRNLISLSYLDSLGLSFKSKNGILLVCKGN 3467
+I G+G I +K+HDG RK+ VR+V L +NL+S+ LD LG +++GIL V KGN
Sbjct: 327 LEIAGVGTIRLKMHDGTVRKIQGVRHVKGLKKNLLSVGQLDDLGCKIHTESGILKVVKGN 386
Query: 3466 LVMLKGFK-RETLYILLGKTVCNSTALISKIVPKKT-MLWHQRIGHISEKGLYHLQKQNL 3293
LV++K K LY+LLG T+ + A ++ ++T M+WHQR+GH+SE+GL L ++NL
Sbjct: 387 LVVMKAEKITSNLYMLLGDTLQEADASVAAASQEETTMMWHQRLGHMSERGLKVLVERNL 446
Query: 3292 LCGDKIDSLDFCDHCVLGKQHKISFSTSTHKSSAPLDYVHCDLWGLEKVPTYGGNVYLLS 3113
L G K +L FC+HCV+ KQH++ F+ T +S LD +H D+W ++ + GG Y +S
Sbjct: 447 LHGLKTVNLPFCEHCVISKQHRLKFARVTTRSKHILDLIHSDVWESPEL-SLGGARYFVS 505
Query: 3112 IVDDFSRHVWVFLLKTKDQTFEKFCEWKRLAENQSRNKLITIKTDNGLEFCYRKFSNLCA 2933
+DD+SR +WV+ +K K F F +K E ++ K+ ++TDNG E+ +F C
Sbjct: 506 FIDDYSRRLWVYPIKKKSDVFPVFKAFKAQIELETGKKIKCLRTDNGGEYVDGEFLAFCK 565
Query: 2932 SHGILHHRTVKYNPQQNGVAERMNRTIMDKVRCLMVSLGVPKPFWGEAVSMAVSLID 2762
GI+ TV + PQQNGVAERMNRT++++ R ++ + G+ K FW EAV A +I+
Sbjct: 566 QEGIVRQFTVAHTPQQNGVAERMNRTLLERTRAMLKTAGMAKSFWAEAVKTACYVIN 622
Score = 115 bits (287), Expect(4) = e-122
Identities = 94/276 (34%), Positives = 140/276 (50%), Gaps = 8/276 (2%)
Frame = -1
Query: 2705 SNLRVFGC---VAFAHQKDGKLDPRSRKGVFRGYPSEVKGYRVWLKGEPGVR-IVISRDV 2538
S+L VFGC V + Q+ KLDP+SRK +F GY VKGYR+W +P R +V+SRDV
Sbjct: 646 SSLHVFGCPVYVMYNSQERTKLDPKSRKCIFLGYADNVKGYRLW---DPTARKVVVSRDV 702
Query: 2537 IF--NELYMPFIKDKHISDSQPSAPTSGSIPVEVEVTSEPSLEPSQEPKTNEELVTXXXX 2364
+F NEL K K+ S S+ +A V++E E S+E ++E
Sbjct: 703 VFAENELQS---KQKNDSTSKETAI------VQME-------EKSKESDSSEA------- 739
Query: 2363 XXXXXXXPETLEPVLEGFDKEVDHPETQAQALRDYQLVRDRVRRVSKEYSRYGYS--YIV 2190
EPV E ++E D V + VRR +++ + + Y++
Sbjct: 740 -----------EPVHE--EQEPDD-------------VNNGVRRSTRQTQKPSWQSDYVM 773
Query: 2189 SYAFAVASYVEEKESLCFSDVLESPNRSLWLCAIDEEMSSLNKNKTWILVPKPSKQKLVD 2010
+ A EE E F + L + S W+ A+ EEM +L++NKTW LV P +K +
Sbjct: 774 TSHDAYCLITEEGEPSTFHEALNGSDASQWMTAMHEEMEALHRNKTWELVELPKGRKAIG 833
Query: 2009 CKWNFKIKEPESANEPPRFKARPVAKGFSQVEGIRF 1902
KW +KIK + ++ R++AR V KG++Q EGI F
Sbjct: 834 NKWVYKIKR-DGNDQVERYRARLVVKGYAQKEGIDF 868
Score = 90.9 bits (224), Expect(4) = e-122
Identities = 57/177 (32%), Positives = 94/177 (53%), Gaps = 8/177 (4%)
Frame = -1
Query: 4439 LTLHLTDNVLREIDEKDNAFEIWTKLERLYLEKSLSNIIYLKEQLFGFKMSGSKTLSENM 4260
L L + D+VL I EK A EIW L +LY KSL N I+LK +L+ +M S ++++++
Sbjct: 58 LHLAMADSVLSSIAEKKTAKEIWDTLIKLYEVKSLHNRIFLKRRLYTLRMGESTSVTDHI 117
Query: 4259 GDLNKIVLELQNVGEKISDENIAVILLNALPDSFNDVKYAIKYGR-------DDLSLSNV 4101
LN + +L KI++ A +LL +LPDS++ + I DD++ + +
Sbjct: 118 NTLNTLFSQLTASDFKIAENERAELLLQSLPDSYDQLIINITNNNIADTLHFDDVAGAIL 177
Query: 4100 KNDLKSKDLDLQKENKSHGENL-FVRGRIDRTEPPSHRFKSRSKSQEKNKVKCFYCG 3933
+ + + K+ + + E+ E L RGR P + RSKS+ K +KC+ CG
Sbjct: 178 EEESRRKNKEERSESSKQAEALTMTRGRSTERGPSGSQNHGRSKSRRKKNIKCYGCG 234
Score = 22.7 bits (47), Expect(4) = e-122
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -3
Query: 2763 TPFTAVNFRTLIELWCG*HVQPKSFWMCG 2677
+P TA++ +T +E+W G V S + G
Sbjct: 624 SPSTAIDLKTPMEMWKGKPVDYSSLHVFG 652
Score = 211 bits (538), Expect(4) = e-108
Identities = 108/216 (50%), Positives = 150/216 (69%), Gaps = 2/216 (0%)
Frame = -1
Query: 1412 DRSLFLS*KPLLQKIFSKFSMYLCKPVITPLASHFKLSDKTCPKTENEKRDMANIPYRMA 1233
DR ++LS K L+K+ +F+M CKP+ TPL +FKLS P E E+ +M+ +PY A
Sbjct: 1032 DRKIWLSQKNYLRKVLRRFNMQDCKPISTPLPVNFKLSSGMSPSNEAERMEMSRVPYASA 1091
Query: 1232 IASVMYSMISTRPDIAFSISLLSRFMSNPGRDHWAALKWLLHYLNGTLGRGLHYYNWSGV 1053
+ S+MY+MI TRPDIA ++ ++SRFM++PG++HW A+K ++ Y+ GT G + + G
Sbjct: 1092 VGSLMYAMICTRPDIAQAVGVVSRFMADPGKEHWNAVKRIMRYIKGTSGVAVCF----GG 1147
Query: 1052 FELI--GYVDSDFAGDKDGRKSTTSYFFTIAGNCVS*KSQLQPVVALSITEAEYIANMEA 879
EL GYVDSDFAGD D RKSTT Y FT+AG VS S+LQ VVALS TEAEY+A +A
Sbjct: 1148 SELTVRGYVDSDFAGDHDKRKSTTGYVFTLAGGAVSWLSKLQTVVALSTTEAEYMAATQA 1207
Query: 878 IEEAIWLQKLLNELHVLHSKAIIYTDSQSSLHLCKN 771
+EAIW+Q+L+ EL + +Y DSQS+LH+ +N
Sbjct: 1208 CKEAIWMQRLMEELGHKQEQITVYCDSQSALHIARN 1243
Score = 191 bits (484), Expect(4) = e-108
Identities = 95/172 (55%), Positives = 125/172 (72%)
Frame = -2
Query: 1933 KAFHKLRAFDFNAIFSPVIKYKMIRIILALVSFYDLNLEQLDVKTAFLHGDLDETIYMCQ 1754
K + + DFN IFSPV++ IR++LA+ + DL+LEQLDVKTAFLHG+L+E IYM Q
Sbjct: 858 KGYAQKEGIDFNEIFSPVVRLTTIRVVLAMCAALDLHLEQLDVKTAFLHGELEEEIYMLQ 917
Query: 1753 PLGFEV*GKEHMTCLLKKSLYGLKQSPRQWSKRFDSFMLNVGFSKSSYDICLYFSGNNVD 1574
P GF+ GKE++ C L KSLYGLKQ+PR W KRFDSF++++ +S+ S D C Y+ + +
Sbjct: 918 PEGFKEQGKENLVCRLTKSLYGLKQAPRCWYKRFDSFIISLDYSRLSSDHCTYYKRFDGN 977
Query: 1573 SVIYLLLYVDDMLIACKYKAKIDDLKSLLKSEFDMKDLGVASKILGMSIIRD 1418
I LLLYVDDML+ K ++ +LK+ L EFDMKDLG A+KILGM I RD
Sbjct: 978 DFIILLLYVDDMLVVGPNKDRVQELKAQLAREFDMKDLGPANKILGMQIHRD 1029
Score = 36.6 bits (83), Expect(4) = e-108
Identities = 16/34 (47%), Positives = 25/34 (73%)
Frame = -2
Query: 712 VSNGVVDIDKISTDNNPADFGTKIVSSNKFMFCR 611
V G VD+ KI T++N AD TK ++++KF++CR
Sbjct: 1264 VEEGSVDMQKIHTNDNLADAMTKSINTDKFIWCR 1297
Score = 25.8 bits (55), Expect(4) = e-108
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = -3
Query: 765 YHEWTKQIDVKYYFIREM 712
+H TK I V+Y+F+RE+
Sbjct: 1246 FHSRTKHIGVQYHFVREV 1263
>gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1312
Score = 319 bits (818), Expect(2) = e-122
Identities = 155/341 (45%), Positives = 216/341 (63%), Gaps = 3/341 (0%)
Frame = -2
Query: 3775 CTDVVNLLVLDSGCSFHMTSNKHWFSDFKPLNQGKVFMGNN*VCDIKGIGNIFIKIHDGV 3596
C + +LD+ ++HM N+ WF+ ++ L G V MG++ C++ GIG + IK+ DG
Sbjct: 328 CAQTSDQWILDTAWTYHMCPNRDWFATYEALQGGTVLMGDDTPCEVAGIGTVQIKMFDGY 387
Query: 3595 TRKLIEVRYVPNLHRNLISLSYLDSLGLSFKSKNGILLVCKGNLVMLKG-FKRETLYILL 3419
R L +VR++PNL R+LISL LD G + +GIL V KG+LV++K K LY L
Sbjct: 388 IRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLR 447
Query: 3418 GKTVCNSTALISKIVPKK--TMLWHQRIGHISEKGLYHLQKQNLLCGDKIDSLDFCDHCV 3245
G T+ + A +S + T LWH R+GH+SE GL L K+ LL G I L FC+HC+
Sbjct: 448 GTTILGNVAAVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRELLDGQSIGKLKFCEHCI 507
Query: 3244 LGKQHKISFSTSTHKSSAPLDYVHCDLWGLEKVPTYGGNVYLLSIVDDFSRHVWVFLLKT 3065
GK ++ F+TSTH + LDYVH DLWG ++GG Y+++IVDD+SR VW + LK
Sbjct: 508 FGKHKRVKFNTSTHTTEGILDYVHSDLWGPACKTSFGGARYMMTIVDDYSRKVWPYFLKH 567
Query: 3064 KDQTFEKFCEWKRLAENQSRNKLITIKTDNGLEFCYRKFSNLCASHGILHHRTVKYNPQQ 2885
K Q F+ F EWK + E Q+ K+ ++TDNG+EFC + F + C S GI+HH TV + PQQ
Sbjct: 568 KYQAFDVFKEWKTMVERQTEKKVKILRTDNGMEFCSKIFKSYCKSEGIVHHYTVPHTPQQ 627
Query: 2884 NGVAERMNRTIMDKVRCLMVSLGVPKPFWGEAVSMAVSLID 2762
NGVAERMN I+ K RC++ + +PK FW EAVS LI+
Sbjct: 628 NGVAERMNMAIISKARCMLSNADLPKQFWAEAVSTTCYLIN 668
Score = 149 bits (375), Expect(2) = e-122
Identities = 97/273 (35%), Positives = 148/273 (54%), Gaps = 2/273 (0%)
Frame = -1
Query: 2714 ANMSNLRVFGCVAFAHQKDGKLDPRSRKGVFRGYPSEVKGYRVWLKGEPGVRIVISRDVI 2535
AN S+LRVFGC A+AH +GKL+PR+ K +F GYPS VKGY++W ++VISR+V+
Sbjct: 689 ANYSDLRVFGCTAYAHVDNGKLEPRAIKCIFLGYPSGVKGYKLWCPETK--KVVISRNVV 746
Query: 2534 FNELYMPFIKDKHISDSQPSAPTSGSIPVEVEVTSEPSLEPSQEPKTNEELVTXXXXXXX 2355
F+E + + DK ++ + S+ VE ++S + E + N++
Sbjct: 747 FHESVI--LHDKPSTNVPVESQEKASVQVEHLISSGHAPE-KENVAINQDA--------- 794
Query: 2354 XXXXPETLEPVLEGFDKEVDHPETQAQALRDYQLVRDRVRRVSKEYSRY-GYSYIVSYAF 2178
PV+E D + Q + +D+ +R K RY + IV+YA
Sbjct: 795 ---------PVIEDSDSSI------VQQSSKRSIAKDKPKRNIKPPRRYIEEANIVAYAL 839
Query: 2177 AVASYVE-EKESLCFSDVLESPNRSLWLCAIDEEMSSLNKNKTWILVPKPSKQKLVDCKW 2001
+VA +E E +S+ + S + + W+ A+ +EM SL KN TW V P ++K + CKW
Sbjct: 840 SVAEEIEGNAEPSTYSEAIVSDDCNRWITAMHDEMESLKKNHTWEFVKLPKEKKPIRCKW 899
Query: 2000 NFKIKEPESANEPPRFKARPVAKGFSQVEGIRF 1902
FK KE S ++ R+KAR VAKG+SQ+ GI F
Sbjct: 900 IFKRKEGMSPSDEARYKARLVAKGYSQIPGIDF 932
Score = 205 bits (521), Expect(4) = 4e-82
Identities = 104/172 (60%), Positives = 129/172 (75%)
Frame = -2
Query: 1933 KAFHKLRAFDFNAIFSPVIKYKMIRIILALVSFYDLNLEQLDVKTAFLHGDLDETIYMCQ 1754
K + ++ DFN +FSP++K+ IR +L +V+ +D LEQ+DVKTAFLHG+L+E IYM Q
Sbjct: 922 KGYSQIPGIDFNDVFSPIMKHSSIRTLLGIVAMHDYELEQMDVKTAFLHGELEEDIYMEQ 981
Query: 1753 PLGFEV*GKEHMTCLLKKSLYGLKQSPRQWSKRFDSFMLNVGFSKSSYDICLYFSGNNVD 1574
P GF V GKE++ C LKKSLYGLKQSPRQW KRFDSFML+ F +S+YD C+Y +
Sbjct: 982 PEGFVVLGKENLVCRLKKSLYGLKQSPRQWYKRFDSFMLSQKFRRSNYDSCVYLKVVD-G 1040
Query: 1573 SVIYLLLYVDDMLIACKYKAKIDDLKSLLKSEFDMKDLGVASKILGMSIIRD 1418
S IYLLLYVDDMLIA K K++I LK+ L SEF MKDLG A KILGM I R+
Sbjct: 1041 SAIYLLLYVDDMLIAAKDKSEIAKLKAQLSSEFGMKDLGAAKKILGMEITRE 1092
Score = 109 bits (273), Expect(4) = 4e-82
Identities = 76/212 (35%), Positives = 105/212 (49%)
Frame = -1
Query: 1403 LFLS*KPLLQKIFSKFSMYLCKPVITPLASHFKLSDKTCPKTENEKRDMANIPYRMAIAS 1224
L+LS K ++K+ +F+M+ KP+I F+L CP+++ + M+ +PY A+ S
Sbjct: 1098 LYLSQKGYIKKVLRRFNMHDVKPII------FRL----CPQSDYDIEYMSRVPYSSAVGS 1147
Query: 1223 VMYSMISTRPDIAFSISLLSRFMSNPGRDHWAALKWLLHYLNGTLGRGLHYYNWSGVFEL 1044
+MY+M D
Sbjct: 1148 LMYAMFGRSRD-----------------------------------------------GF 1160
Query: 1043 IGYVDSDFAGDKDGRKSTTSYFFTIAGNCVS*KSQLQPVVALSITEAEYIANMEAIEEAI 864
+GYVDSDFAGD D R+S T Y FTI G VS K+ LQ VALS TEAEY+A EA +EAI
Sbjct: 1161 VGYVDSDFAGDLDRRRSLTGYVFTIGGCDVSWKASLQATVALSTTEAEYMAISEACKEAI 1220
Query: 863 WLQKLLNELHVLHSKAIIYTDSQSSLHLCKNQ 768
WL+ L EL + S I+ DSQS++ L K+Q
Sbjct: 1221 WLRGLYTELCGVTSCINIFCDSQSAICLTKDQ 1252
Score = 36.2 bits (82), Expect(4) = 4e-82
Identities = 18/35 (51%), Positives = 22/35 (62%)
Frame = -2
Query: 718 GNVSNGVVDIDKISTDNNPADFGTKIVSSNKFMFC 614
G + G V + KIST +NPAD TK VS+ KF C
Sbjct: 1270 GVIVEGDVKVCKISTHDNPADMMTKPVSATKFELC 1304
Score = 26.9 bits (58), Expect(4) = 4e-82
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = -3
Query: 768 VYHEWTKQIDVKYYFIR 718
++HE TK IDV+Y+ IR
Sbjct: 1253 MFHERTKHIDVRYHIIR 1269
Score = 91.7 bits (226), Expect = 3e-15
Identities = 55/181 (30%), Positives = 102/181 (56%), Gaps = 11/181 (6%)
Frame = -1
Query: 4445 SCLTLHLTDNVLREIDEKDNAFEIWTKLERLYLEKSLSNIIYLKEQLFGFKMSGSKTLSE 4266
S + LHL++N+L+E+ +++ A +W KLE++ + K L++ ++LK++LF K+ ++ +
Sbjct: 95 SYIHLHLSNNILQEVLKEETAAGLWLKLEQICMTKDLTSKMHLKQKLFLHKLQDDGSVMD 154
Query: 4265 NMGDLNKIVLELQNVGEKISDENIAVILLNALPDSFNDVKYAIKYGRDDLSLSNVKNDL- 4089
++ +IV +L+++ K +E++ +ILL +LP S+ + + I Y D L L V + L
Sbjct: 155 HLSTFKEIVADLESIEVKYDEEDLGLILLCSLPSSYANFRDTILYSHDTLILKEVYDALH 214
Query: 4088 ---KSKDLDLQKENKSHGENLFVRGRIDR-------TEPPSHRFKSRSKSQEKNKVKCFY 3939
K K + + + S E L VRGR + S ++ RSKS+ + K C Y
Sbjct: 215 AKEKMKKMVPSEGSNSQAEGLVVRGRQQEKNTKNQSRDKSSSSYRGRSKSRGRYK-SCKY 273
Query: 3938 C 3936
C
Sbjct: 274 C 274
>gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1280
Score = 319 bits (818), Expect(2) = e-122
Identities = 155/341 (45%), Positives = 216/341 (63%), Gaps = 3/341 (0%)
Frame = -2
Query: 3775 CTDVVNLLVLDSGCSFHMTSNKHWFSDFKPLNQGKVFMGNN*VCDIKGIGNIFIKIHDGV 3596
C + +LD+ ++HM N+ WF+ ++ L G V MG++ C++ GIG + IK+ DG
Sbjct: 328 CAQTSDQWILDTAWTYHMCPNRDWFATYEALQGGTVLMGDDTPCEVAGIGTVQIKMFDGY 387
Query: 3595 TRKLIEVRYVPNLHRNLISLSYLDSLGLSFKSKNGILLVCKGNLVMLKG-FKRETLYILL 3419
R L +VR++PNL R+LISL LD G + +GIL V KG+LV++K K LY L
Sbjct: 388 IRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLR 447
Query: 3418 GKTVCNSTALISKIVPKK--TMLWHQRIGHISEKGLYHLQKQNLLCGDKIDSLDFCDHCV 3245
G T+ + A +S + T LWH R+GH+SE GL L K+ LL G I L FC+HC+
Sbjct: 448 GTTILGNVAAVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRELLDGQSIGKLKFCEHCI 507
Query: 3244 LGKQHKISFSTSTHKSSAPLDYVHCDLWGLEKVPTYGGNVYLLSIVDDFSRHVWVFLLKT 3065
GK ++ F+TSTH + LDYVH DLWG ++GG Y+++IVDD+SR VW + LK
Sbjct: 508 FGKHKRVKFNTSTHTTEGILDYVHSDLWGPACKTSFGGARYMMTIVDDYSRKVWPYFLKH 567
Query: 3064 KDQTFEKFCEWKRLAENQSRNKLITIKTDNGLEFCYRKFSNLCASHGILHHRTVKYNPQQ 2885
K Q F+ F EWK + E Q+ K+ ++TDNG+EFC + F + C S GI+HH TV + PQQ
Sbjct: 568 KYQAFDVFKEWKTMVERQTEKKVKILRTDNGMEFCSKIFKSYCKSEGIVHHYTVPHTPQQ 627
Query: 2884 NGVAERMNRTIMDKVRCLMVSLGVPKPFWGEAVSMAVSLID 2762
NGVAERMN I+ K RC++ + +PK FW EAVS LI+
Sbjct: 628 NGVAERMNMAIISKARCMLSNADLPKQFWAEAVSTTCYLIN 668
Score = 149 bits (375), Expect(2) = e-122
Identities = 97/273 (35%), Positives = 148/273 (54%), Gaps = 2/273 (0%)
Frame = -1
Query: 2714 ANMSNLRVFGCVAFAHQKDGKLDPRSRKGVFRGYPSEVKGYRVWLKGEPGVRIVISRDVI 2535
AN S+LRVFGC A+AH +GKL+PR+ K +F GYPS VKGY++W ++VISR+V+
Sbjct: 689 ANYSDLRVFGCTAYAHVDNGKLEPRAIKCIFLGYPSGVKGYKLWCPETK--KVVISRNVV 746
Query: 2534 FNELYMPFIKDKHISDSQPSAPTSGSIPVEVEVTSEPSLEPSQEPKTNEELVTXXXXXXX 2355
F+E + + DK ++ + S+ VE ++S + E + N++
Sbjct: 747 FHESVI--LHDKPSTNVPVESQEKASVQVEHLISSGHAPE-KENVAINQDA--------- 794
Query: 2354 XXXXPETLEPVLEGFDKEVDHPETQAQALRDYQLVRDRVRRVSKEYSRY-GYSYIVSYAF 2178
PV+E D + Q + +D+ +R K RY + IV+YA
Sbjct: 795 ---------PVIEDSDSSI------VQQSSKRSIAKDKPKRNIKPPRRYIEEANIVAYAL 839
Query: 2177 AVASYVE-EKESLCFSDVLESPNRSLWLCAIDEEMSSLNKNKTWILVPKPSKQKLVDCKW 2001
+VA +E E +S+ + S + + W+ A+ +EM SL KN TW V P ++K + CKW
Sbjct: 840 SVAEEIEGNAEPSTYSEAIVSDDCNRWITAMHDEMESLKKNHTWEFVKLPKEKKPIRCKW 899
Query: 2000 NFKIKEPESANEPPRFKARPVAKGFSQVEGIRF 1902
FK KE S ++ R+KAR VAKG+SQ+ GI F
Sbjct: 900 IFKRKEGMSPSDEARYKARLVAKGYSQIPGIDF 932
Score = 205 bits (521), Expect = 2e-49
Identities = 104/172 (60%), Positives = 129/172 (75%)
Frame = -2
Query: 1933 KAFHKLRAFDFNAIFSPVIKYKMIRIILALVSFYDLNLEQLDVKTAFLHGDLDETIYMCQ 1754
K + ++ DFN +FSP++K+ IR +L +V+ +D LEQ+DVKTAFLHG+L+E IYM Q
Sbjct: 922 KGYSQIPGIDFNDVFSPIMKHSSIRTLLGIVAMHDYELEQMDVKTAFLHGELEEDIYMEQ 981
Query: 1753 PLGFEV*GKEHMTCLLKKSLYGLKQSPRQWSKRFDSFMLNVGFSKSSYDICLYFSGNNVD 1574
P GF V GKE++ C LKKSLYGLKQSPRQW KRFDSFML+ F +S+YD C+Y +
Sbjct: 982 PEGFVVLGKENLVCRLKKSLYGLKQSPRQWYKRFDSFMLSQKFRRSNYDSCVYLKVVD-G 1040
Query: 1573 SVIYLLLYVDDMLIACKYKAKIDDLKSLLKSEFDMKDLGVASKILGMSIIRD 1418
S IYLLLYVDDMLIA K K++I LK+ L SEF MKDLG A KILGM I R+
Sbjct: 1041 SAIYLLLYVDDMLIAAKDKSEIAKLKAQLSSEFGMKDLGAAKKILGMEITRE 1092
Score = 94.4 bits (233), Expect(3) = 8e-23
Identities = 53/92 (57%), Positives = 64/92 (69%)
Frame = -1
Query: 1043 IGYVDSDFAGDKDGRKSTTSYFFTIAGNCVS*KSQLQPVVALSITEAEYIANMEAIEEAI 864
+GYVDSDFAGD D R+S T Y FTI G VS K+ LQ VALS TEAEY+A EA +EAI
Sbjct: 1129 VGYVDSDFAGDLDRRRSLTGYVFTIGGCDVSWKASLQATVALSTTEAEYMAISEACKEAI 1188
Query: 863 WLQKLLNELHVLHSKAIIYTDSQSSLHLCKNQ 768
WL+ L EL + S I+ DSQS++ L K+Q
Sbjct: 1189 WLRGLYTELCGVTSCINIFCDSQSAICLTKDQ 1220
Score = 36.2 bits (82), Expect(3) = 8e-23
Identities = 18/35 (51%), Positives = 22/35 (62%)
Frame = -2
Query: 718 GNVSNGVVDIDKISTDNNPADFGTKIVSSNKFMFC 614
G + G V + KIST +NPAD TK VS+ KF C
Sbjct: 1238 GVIVEGDVKVCKISTHDNPADMMTKPVSATKFELC 1272
Score = 26.9 bits (58), Expect(3) = 8e-23
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = -3
Query: 768 VYHEWTKQIDVKYYFIR 718
++HE TK IDV+Y+ IR
Sbjct: 1221 MFHERTKHIDVRYHIIR 1237
Score = 91.7 bits (226), Expect = 3e-15
Identities = 55/181 (30%), Positives = 102/181 (56%), Gaps = 11/181 (6%)
Frame = -1
Query: 4445 SCLTLHLTDNVLREIDEKDNAFEIWTKLERLYLEKSLSNIIYLKEQLFGFKMSGSKTLSE 4266
S + LHL++N+L+E+ +++ A +W KLE++ + K L++ ++LK++LF K+ ++ +
Sbjct: 95 SYIHLHLSNNILQEVLKEETAAGLWLKLEQICMTKDLTSKMHLKQKLFLHKLQDDGSVMD 154
Query: 4265 NMGDLNKIVLELQNVGEKISDENIAVILLNALPDSFNDVKYAIKYGRDDLSLSNVKNDL- 4089
++ +IV +L+++ K +E++ +ILL +LP S+ + + I Y D L L V + L
Sbjct: 155 HLSTFKEIVADLESIEVKYDEEDLGLILLCSLPSSYANFRDTILYSHDTLILKEVYDALH 214
Query: 4088 ---KSKDLDLQKENKSHGENLFVRGRIDR-------TEPPSHRFKSRSKSQEKNKVKCFY 3939
K K + + + S E L VRGR + S ++ RSKS+ + K C Y
Sbjct: 215 AKEKMKKMVPSEGSNSQAEGLVVRGRQQEKNTKNQSRDKSSSSYRGRSKSRGRYK-SCKY 273
Query: 3938 C 3936
C
Sbjct: 274 C 274
>gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula]
Length = 1305
Score = 285 bits (729), Expect(3) = e-121
Identities = 145/357 (40%), Positives = 227/357 (63%), Gaps = 2/357 (0%)
Frame = -2
Query: 3826 DGNSMFSEVLCVSLSPSCTDVVNLLVLDSGCSFHMTSNKHWFSDFKPLNQGKVFMGNN*V 3647
DG ++SE + S + ++ ++DSG ++HMT ++ WF ++P+++G V+MGN+
Sbjct: 269 DGEILYSEA--ATSSEGERQLNDVWIMDSGATWHMTPHRDWFYSYEPISEGSVYMGNDHA 326
Query: 3646 CDIKGIGNIFIKIHDGVTRKLIEVRYVPNLHRNLISLSYLDSLGLSFKSKNGILLVCKGN 3467
+I G+G I +K+HDG RK+ VR+V L +NL+S+ LD LG S++GIL V KGN
Sbjct: 327 LEIAGVGTIRLKMHDGTVRKIQGVRHVKGLKKNLLSVGQLDDLGCKIHSESGILKVVKGN 386
Query: 3466 LVMLKGFK-RETLYILLGKTVCNSTALISKIVPKK-TMLWHQRIGHISEKGLYHLQKQNL 3293
LV++K K LY+LLG T+ + A ++ ++ TM+WHQR+GH+SE+GL L ++NL
Sbjct: 387 LVVMKAEKITSNLYMLLGDTLQEADASVAAASQEETTMMWHQRLGHMSERGLKVLVERNL 446
Query: 3292 LCGDKIDSLDFCDHCVLGKQHKISFSTSTHKSSAPLDYVHCDLWGLEKVPTYGGNVYLLS 3113
L G K +L FC+HCV+ KQH++ F+ T +S LD +H D+W K+ + GG Y +S
Sbjct: 447 LHGLKTVNLPFCEHCVISKQHRLKFARVTTRSKHILDLIHSDVWESPKL-SLGGARYFVS 505
Query: 3112 IVDDFSRHVWVFLLKTKDQTFEKFCEWKRLAENQSRNKLITIKTDNGLEFCYRKFSNLCA 2933
+DD+SR +WV+ +K K F F +K E ++ K+ ++TDNG E+ +F C
Sbjct: 506 FIDDYSRRLWVYPIKKKSDVFPVFKAFKAQIELETGKKIKCLRTDNGGEYVDGEFLAFCK 565
Query: 2932 SHGILHHRTVKYNPQQNGVAERMNRTIMDKVRCLMVSLGVPKPFWGEAVSMAVSLID 2762
GI+ TV + PQQNGVAERMNRT++++ R ++ + + K FW EAV A +I+
Sbjct: 566 QEGIVRQFTVAHTPQQNGVAERMNRTLLERTRAMLKTAEMAKSFWAEAVKTACYVIN 622
Score = 111 bits (277), Expect(3) = e-121
Identities = 86/274 (31%), Positives = 132/274 (48%), Gaps = 6/274 (2%)
Frame = -1
Query: 2705 SNLRVFGC---VAFAHQKDGKLDPRSRKGVFRGYPSEVKGYRVWLKGEPGVR-IVISRDV 2538
S+L VFGC V + Q+ KLDP+SRK +F GY VKGYR+W +P R +V+SRDV
Sbjct: 646 SSLHVFGCPVYVMYNSQERTKLDPKSRKCIFLGYADNVKGYRLW---DPTARKVVVSRDV 702
Query: 2537 IFNELYMPFIKDKHISDSQPSAPTSGSIPVEVEVTSEPSLEPSQEPKTNEELVTXXXXXX 2358
+F E + S+ + + + +++E S+ S + S+ +EE
Sbjct: 703 VFAENELQ-------SEQKNDSTFKETAILQIEEKSKES-DSSEAESVHEE--------- 745
Query: 2357 XXXXXPETLEPVLEGFDKEVDHPETQAQALRDYQLVRDRVRRVSKEYSRYGYS--YIVSY 2184
+E D V + VRR +++ + + Y+++
Sbjct: 746 -----------------QEPDD-------------VNNGVRRSTRQTQKPSWQSDYVMTG 775
Query: 2183 AFAVASYVEEKESLCFSDVLESPNRSLWLCAIDEEMSSLNKNKTWILVPKPSKQKLVDCK 2004
A EE E F + L + S W+ AI EEM +L KNKTW LV P +K + K
Sbjct: 776 HDAYCLIAEEGEPSTFHEALNGSDASQWMTAIHEEMEALRKNKTWELVELPKGRKAIGNK 835
Query: 2003 WNFKIKEPESANEPPRFKARPVAKGFSQVEGIRF 1902
W +KIK + ++ R++AR V KG++Q EGI F
Sbjct: 836 WVYKIKR-DGNDQVERYRARLVVKGYAQKEGIDF 868
Score = 93.2 bits (230), Expect(3) = e-121
Identities = 58/177 (32%), Positives = 95/177 (53%), Gaps = 8/177 (4%)
Frame = -1
Query: 4439 LTLHLTDNVLREIDEKDNAFEIWTKLERLYLEKSLSNIIYLKEQLFGFKMSGSKTLSENM 4260
L L + D+VL I EK A EIW L +LY KSL N I+LK +L+ +M S ++++++
Sbjct: 58 LHLAMADSVLSSIAEKKTAKEIWDTLIKLYEVKSLHNRIFLKRRLYTLRMGESTSVTDHI 117
Query: 4259 GDLNKIVLELQNVGEKISDENIAVILLNALPDSFNDVKYAIKYGR-------DDLSLSNV 4101
LN + +L KI++ A +LL +LPDS++ + I DD++ + +
Sbjct: 118 NTLNTLFSQLTASDFKIAENERAELLLQSLPDSYDQLIINITNNNIADTLHFDDVAGAIL 177
Query: 4100 KNDLKSKDLDLQKENKSHGENL-FVRGRIDRTEPPSHRFKSRSKSQEKNKVKCFYCG 3933
+ + + K+ + + E+ E L RGR P + RSKS+ KN +KC+ CG
Sbjct: 178 EEESRRKNKEERSESSKQAEALTMTRGRSTERGPSGSQNHGRSKSRRKNNIKCYGCG 234
Score = 210 bits (534), Expect(4) = e-106
Identities = 107/216 (49%), Positives = 149/216 (68%), Gaps = 2/216 (0%)
Frame = -1
Query: 1412 DRSLFLS*KPLLQKIFSKFSMYLCKPVITPLASHFKLSDKTCPKTENEKRDMANIPYRMA 1233
DR ++LS K L+K+ +F+M CKP+ TPL +FKLS P E E+ +M+ +PY A
Sbjct: 1032 DRKIWLSQKNYLRKVLRRFNMQDCKPISTPLPVNFKLSSGMSPSNEAERMEMSRVPYASA 1091
Query: 1232 IASVMYSMISTRPDIAFSISLLSRFMSNPGRDHWAALKWLLHYLNGTLGRGLHYYNWSGV 1053
+ S+MY+MI TRPDIA ++ ++SRFM++PG++HW A+K ++ Y+ GT G + + G
Sbjct: 1092 VGSLMYAMICTRPDIAQAVGVVSRFMADPGKEHWNAVKRIMRYIKGTSGVAVCF----GG 1147
Query: 1052 FELI--GYVDSDFAGDKDGRKSTTSYFFTIAGNCVS*KSQLQPVVALSITEAEYIANMEA 879
EL GYVDSDFAGD D RKSTT Y FT+ G VS S+LQ VVALS TEAEY+A +A
Sbjct: 1148 SELTVRGYVDSDFAGDHDKRKSTTGYVFTLTGGAVSWLSKLQTVVALSTTEAEYMAATQA 1207
Query: 878 IEEAIWLQKLLNELHVLHSKAIIYTDSQSSLHLCKN 771
+EAIW+Q+L+ EL + +Y DSQS+LH+ +N
Sbjct: 1208 CKEAIWMQRLMEELGHKQEQITVYCDSQSALHIARN 1243
Score = 188 bits (477), Expect(4) = e-106
Identities = 93/172 (54%), Positives = 125/172 (72%)
Frame = -2
Query: 1933 KAFHKLRAFDFNAIFSPVIKYKMIRIILALVSFYDLNLEQLDVKTAFLHGDLDETIYMCQ 1754
K + + DFN IFSPV++ IR++LA+ + DL+LEQLDVKTAFLHG+L+E IYM Q
Sbjct: 858 KGYAQKEGIDFNEIFSPVVRLTTIRVVLAMCAALDLHLEQLDVKTAFLHGELEEEIYMLQ 917
Query: 1753 PLGFEV*GKEHMTCLLKKSLYGLKQSPRQWSKRFDSFMLNVGFSKSSYDICLYFSGNNVD 1574
P GF+ GKE++ C L KSLYGLKQ+PR W KRFDSF++++ +++ S D C Y+ + +
Sbjct: 918 PEGFKEQGKENLVCRLTKSLYGLKQAPRCWYKRFDSFIISLDYNRLSSDHCTYYKRFDGN 977
Query: 1573 SVIYLLLYVDDMLIACKYKAKIDDLKSLLKSEFDMKDLGVASKILGMSIIRD 1418
I LLLYVDD+L+ K ++ +LK+ L EFDMKDLG A+KILGM I RD
Sbjct: 978 DFIILLLYVDDILVVGPNKDRVQELKAQLAREFDMKDLGPANKILGMQIHRD 1029
Score = 36.6 bits (83), Expect(4) = e-106
Identities = 16/34 (47%), Positives = 25/34 (73%)
Frame = -2
Query: 712 VSNGVVDIDKISTDNNPADFGTKIVSSNKFMFCR 611
V G VD+ KI T++N AD TK ++++KF++CR
Sbjct: 1264 VEEGSVDMQKIHTNDNLADVMTKPINADKFVWCR 1297
Score = 25.8 bits (55), Expect(4) = e-106
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = -3
Query: 765 YHEWTKQIDVKYYFIREM 712
+H TK I V+Y+F+RE+
Sbjct: 1246 FHSRTKHIGVQYHFVREV 1263
>gb|AFB73911.1| polyprotein [Citrus sinensis]
Length = 1309
Score = 276 bits (707), Expect(4) = e-121
Identities = 142/356 (39%), Positives = 218/356 (61%), Gaps = 1/356 (0%)
Frame = -2
Query: 3826 DGNSMFSEVLCVSLSPSCTDVVNLLVLDSGCSFHMTSNKHWFSDFKPLNQGKVFMGNN*V 3647
DG ++SE VS + ++ ++DSG ++HMTS + WF ++P++ G V+MGN+
Sbjct: 270 DGEILYSEATTVSEGRK--RLSDVWLIDSGATWHMTSRREWFHTYEPISGGSVYMGNDHA 327
Query: 3646 CDIKGIGNIFIKIHDGVTRKLIEVRYVPNLHRNLISLSYLDSLGLSFKSKNGILLVCKGN 3467
+I GIG I IK+ DG R + EVR+V L +NL+SL +DS G +NGI+ + KG
Sbjct: 328 LEIAGIGTIKIKMFDGTIRTIGEVRHVNGLKKNLLSLGQMDSHGYKTHVENGIMKIVKGA 387
Query: 3466 LVMLKGFK-RETLYILLGKTVCNSTALISKIVPKKTMLWHQRIGHISEKGLYHLQKQNLL 3290
LV++K K L++L G+T+ + A ++ + TM+WH ++GH+SE+GL L ++ LL
Sbjct: 388 LVLMKVEKIGANLFMLKGETLQEADACVASNGEESTMMWHLKLGHMSEQGLKILSERKLL 447
Query: 3289 CGDKIDSLDFCDHCVLGKQHKISFSTSTHKSSAPLDYVHCDLWGLEKVPTYGGNVYLLSI 3110
G K SL FC+HCV KQH++ FS S +S LD +H D+W + + GG Y+++
Sbjct: 448 PGLKSVSLPFCEHCVTSKQHRLKFSRSIARSKCILDLIHSDVWESPDI-SMGGAKYMVTF 506
Query: 3109 VDDFSRHVWVFLLKTKDQTFEKFCEWKRLAENQSRNKLITIKTDNGLEFCYRKFSNLCAS 2930
+DD+SR WV+ +K K F F E+K E +S K+ ++TDNG E+ +F C
Sbjct: 507 IDDYSRRCWVYPIKKKSDVFPVFKEYKAWVELESGKKIKCLRTDNGGEYTDGEFLAFCKQ 566
Query: 2929 HGILHHRTVKYNPQQNGVAERMNRTIMDKVRCLMVSLGVPKPFWGEAVSMAVSLID 2762
GI TV Y PQQNGVAERMNRT+ +++R ++ + G+P FW EA A +++
Sbjct: 567 EGIQRQFTVAYTPQQNGVAERMNRTLTERIRAMLRTAGLPNSFWAEAAKTACYIVN 622
Score = 116 bits (291), Expect(4) = e-121
Identities = 93/275 (33%), Positives = 131/275 (47%), Gaps = 4/275 (1%)
Frame = -1
Query: 2714 ANMSNLRVFGC---VAFAHQKDGKLDPRSRKGVFRGYPSEVKGYRVWLKGEPGV-RIVIS 2547
A+ S L FGC V + Q+ KLD +SR+ +F GY VKGYR+W +P +IVIS
Sbjct: 643 ADYSYLHAFGCPMYVMYNAQERTKLDAKSRRCIFLGYADGVKGYRLW---DPTAHKIVIS 699
Query: 2546 RDVIFNELYMPFIKDKHISDSQPSAPTSGSIPVEVEVTSEPSLEPSQEPKTNEELVTXXX 2367
RDVIF E + + D S ++PV VE E S P+ E+
Sbjct: 700 RDVIFVEDQL----QRKDGDDGTVKEKSETVPVYVENNPENSDSSEAAPEHEEQ------ 749
Query: 2366 XXXXXXXXPETLEPVLEGFDKEVDHPETQAQALRDYQLVRDRVRRVSKEYSRYGYSYIVS 2187
EPV E + PE + R RR +S Y V+
Sbjct: 750 ------------EPV------ESEAPEVRRST---------RERRPPTWHSEYVTEINVA 782
Query: 2186 YAFAVASYVEEKESLCFSDVLESPNRSLWLCAIDEEMSSLNKNKTWILVPKPSKQKLVDC 2007
Y E+ E F + L S + +LW+ A+ EE+ +L+KNKTW LVP P +K +
Sbjct: 783 YCLLT----EDGEPSTFHEALNSSDVALWMTAMQEEIEALHKNKTWELVPLPRGRKAIGN 838
Query: 2006 KWNFKIKEPESANEPPRFKARPVAKGFSQVEGIRF 1902
KW +KIK + ++ R++AR V KG++Q EGI F
Sbjct: 839 KWVYKIKR-DGNDQVERYRARLVVKGYAQKEGIDF 872
Score = 94.4 bits (233), Expect(4) = e-121
Identities = 58/180 (32%), Positives = 95/180 (52%), Gaps = 8/180 (4%)
Frame = -1
Query: 4445 SCLTLHLTDNVLREIDEKDNAFEIWTKLERLYLEKSLSNIIYLKEQLFGFKMSGSKTLSE 4266
S L L L D VL + EK+ A EIW L +LY KSL N I+LK +L+ +M+ S +++
Sbjct: 56 SDLHLALADGVLSSVAEKNTAKEIWDTLTKLYEAKSLHNKIFLKRKLYTLRMAESTMVTD 115
Query: 4265 NMGDLNKIVLELQNVGEKISDENIAVILLNALPDSFNDVKYAIKYGR-------DDLSLS 4107
++ L + +L +G I + A +LL +LPDS++ + + DD++ S
Sbjct: 116 HINTLKTLFSQLTTLGHNIEENERAELLLQSLPDSYDQLIINLTNNNPVESLVFDDVAAS 175
Query: 4106 NVKNDLKSKDLDLQKENKSHGENLFV-RGRIDRTEPPSHRFKSRSKSQEKNKVKCFYCGK 3930
+ + + K+ + ++ + E L V RGR P + + RSK + K VKC+ CGK
Sbjct: 176 VLNEESRRKNKENRQASSQQAEALSVTRGRSTERGPSGSQNQGRSKFRGKKNVKCYNCGK 235
Score = 23.1 bits (48), Expect(4) = e-121
Identities = 7/17 (41%), Positives = 12/17 (70%)
Frame = -3
Query: 2763 TPFTAVNFRTLIELWCG 2713
+P TA+ +T +E+W G
Sbjct: 624 SPSTAIGLKTAMEMWTG 640
Score = 207 bits (528), Expect(4) = e-106
Identities = 105/215 (48%), Positives = 148/215 (68%)
Frame = -1
Query: 1415 SDRSLFLS*KPLLQKIFSKFSMYLCKPVITPLASHFKLSDKTCPKTENEKRDMANIPYRM 1236
++ ++LS K L+KI +F+M CK + T L +FKLS CP E E+++M+ +PY
Sbjct: 1035 NNMKIWLSQKNYLKKILRRFNMQDCKSISTSLPVNFKLSSSMCPSNEAERKEMSRVPYAS 1094
Query: 1235 AIASVMYSMISTRPDIAFSISLLSRFMSNPGRDHWAALKWLLHYLNGTLGRGLHYYNWSG 1056
A+ S+M++MI TRPDIA ++ ++SR+M+NPG +HW A+K +L Y+ GT L Y
Sbjct: 1095 AVGSLMFAMICTRPDIAQAVGVVSRYMANPGGEHWIAVKRILRYIRGTSDVALCY--GGS 1152
Query: 1055 VFELIGYVDSDFAGDKDGRKSTTSYFFTIAGNCVS*KSQLQPVVALSITEAEYIANMEAI 876
F + GYVDSDFAGD D RKSTT Y FT+AG VS S+LQ VVALS TEAEY+A +A
Sbjct: 1153 EFTVRGYVDSDFAGDLDKRKSTTGYVFTLAGAAVSWVSKLQTVVALSTTEAEYMAATQAC 1212
Query: 875 EEAIWLQKLLNELHVLHSKAIIYTDSQSSLHLCKN 771
++AIW+Q+LL EL K +++ DSQS+LH+ +N
Sbjct: 1213 KKAIWIQRLLEELGHKQQKILVFCDSQSALHIARN 1247
Score = 194 bits (493), Expect(4) = e-106
Identities = 96/172 (55%), Positives = 126/172 (73%)
Frame = -2
Query: 1933 KAFHKLRAFDFNAIFSPVIKYKMIRIILALVSFYDLNLEQLDVKTAFLHGDLDETIYMCQ 1754
K + + DFN IFSPV++ +RI+LA+ + +DL+LEQLDVKTAFLHG+L+E IYM Q
Sbjct: 862 KGYAQKEGIDFNEIFSPVVRLTTVRIVLAMCATFDLHLEQLDVKTAFLHGELEEEIYMLQ 921
Query: 1753 PLGFEV*GKEHMTCLLKKSLYGLKQSPRQWSKRFDSFMLNVGFSKSSYDICLYFSGNNVD 1574
P GF GKE++ C L KSLYGLKQ+PR W KRFDSF++++G+++ S D C Y+ +
Sbjct: 922 PEGFAETGKENLVCRLNKSLYGLKQAPRYWYKRFDSFIMSLGYNRLSSDHCAYYKRFEDN 981
Query: 1573 SVIYLLLYVDDMLIACKYKAKIDDLKSLLKSEFDMKDLGVASKILGMSIIRD 1418
I LLLYVDDML+A K +I +LK+ L EF+MKDLG A+KILGM I RD
Sbjct: 982 DFIILLLYVDDMLVAGPNKDRIQELKAQLAREFEMKDLGPANKILGMQIHRD 1033
Score = 32.0 bits (71), Expect(4) = e-106
Identities = 15/34 (44%), Positives = 23/34 (67%)
Frame = -2
Query: 712 VSNGVVDIDKISTDNNPADFGTKIVSSNKFMFCR 611
V +G VD+ KI T N AD TK ++++KF++ R
Sbjct: 1268 VEDGSVDLQKIHTKENLADVLTKPINTDKFVWSR 1301
Score = 25.8 bits (55), Expect(4) = e-106
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = -3
Query: 765 YHEWTKQIDVKYYFIREM 712
+H TK I V+Y+F+RE+
Sbjct: 1250 FHSRTKHIGVQYHFVREV 1267