BLASTX nr result
ID: Catharanthus22_contig00006692
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus22_contig00006692
(2075 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002263648.1| PREDICTED: DNA-directed RNA polymerase III s... 150 3e-33
gb|EOY05784.1| DNA-directed RNA polymerase III subunit RPC9 [The... 144 2e-31
emb|CAN72759.1| hypothetical protein VITISV_004802 [Vitis vinifera] 142 6e-31
gb|EXB51154.1| DNA-directed RNA polymerase III subunit RPC9 [Mor... 138 8e-30
ref|XP_006420026.1| hypothetical protein CICLE_v10006087mg [Citr... 136 3e-29
ref|XP_006489453.1| PREDICTED: DNA-directed RNA polymerase III s... 136 4e-29
ref|XP_004145392.1| PREDICTED: DNA-directed RNA polymerase III s... 135 7e-29
ref|XP_002306270.1| hypothetical protein POPTR_0005s06860g [Popu... 134 2e-28
ref|NP_001078783.1| RNA polymerase II, Rpb4, core protein [Arabi... 134 2e-28
ref|NP_201100.1| RNA polymerase II, Rpb4, core protein [Arabidop... 133 3e-28
gb|AFK37258.1| unknown [Lotus japonicus] 132 6e-28
ref|XP_006394332.1| hypothetical protein EUTSA_v10005100mg [Eutr... 131 1e-27
ref|XP_006295190.1| hypothetical protein CARUB_v10024270mg [Caps... 131 1e-27
gb|AFK40316.1| unknown [Lotus japonicus] 130 3e-27
ref|XP_004250017.1| PREDICTED: uncharacterized protein LOC101258... 129 4e-27
ref|XP_006360506.1| PREDICTED: uncharacterized protein LOC102587... 129 5e-27
ref|XP_006281277.1| hypothetical protein CARUB_v10027325mg [Caps... 129 6e-27
ref|XP_002525535.1| conserved hypothetical protein [Ricinus comm... 129 6e-27
dbj|BAB10864.1| unnamed protein product [Arabidopsis thaliana] 128 1e-26
gb|ESW35387.1| hypothetical protein PHAVU_001G230900g [Phaseolus... 127 2e-26
>ref|XP_002263648.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC9 [Vitis
vinifera] gi|296087853|emb|CBI35109.3| unnamed protein
product [Vitis vinifera]
Length = 156
Score = 150 bits (378), Expect = 3e-33
Identities = 75/93 (80%), Positives = 82/93 (88%)
Frame = +1
Query: 1153 MKILKANAGAPTNFEVLDFLRSRGAGKDPTRCLTSIASSEYKVYDYLEQTAACNQTREII 1332
MKI KANAGA TNFEVLDFLRSRGA KDPTR + IA+SE+KVYDYL ++AACNQTRE I
Sbjct: 1 MKIKKANAGALTNFEVLDFLRSRGAAKDPTRVIAPIAASEFKVYDYLVESAACNQTRESI 60
Query: 1333 HEFLEKCKSYDLAKAEILNIINIRPSSVVEIDP 1431
+E LEKCK YDLAKAEILNIINIRP+S VEIDP
Sbjct: 61 NELLEKCKKYDLAKAEILNIINIRPASPVEIDP 93
>gb|EOY05784.1| DNA-directed RNA polymerase III subunit RPC9 [Theobroma cacao]
Length = 245
Score = 144 bits (362), Expect = 2e-31
Identities = 69/93 (74%), Positives = 83/93 (89%)
Frame = +1
Query: 1153 MKILKANAGAPTNFEVLDFLRSRGAGKDPTRCLTSIASSEYKVYDYLEQTAACNQTREII 1332
MKI +ANAGA TNFEVLDFLRSRGA KDPTR + IA SE+KVYDYL ++AACNQT+E I
Sbjct: 76 MKIKEANAGALTNFEVLDFLRSRGASKDPTRVIVPIAPSEFKVYDYLVESAACNQTKEHI 135
Query: 1333 HEFLEKCKSYDLAKAEILNIINIRPSSVVEIDP 1431
++FLE+CK+Y LAKAE+LNIIN+RPS++VEIDP
Sbjct: 136 NDFLERCKNYKLAKAEVLNIINLRPSALVEIDP 168
>emb|CAN72759.1| hypothetical protein VITISV_004802 [Vitis vinifera]
Length = 388
Score = 142 bits (358), Expect = 6e-31
Identities = 71/89 (79%), Positives = 78/89 (87%)
Frame = +1
Query: 1165 KANAGAPTNFEVLDFLRSRGAGKDPTRCLTSIASSEYKVYDYLEQTAACNQTREIIHEFL 1344
KANAGA TNFEVLDFLRSRGA KD TR + IA+SE+KVYDYL ++AACNQTRE I+E L
Sbjct: 26 KANAGALTNFEVLDFLRSRGAAKDXTRVIAPIAASEFKVYDYLVESAACNQTRESINELL 85
Query: 1345 EKCKSYDLAKAEILNIINIRPSSVVEIDP 1431
EKCK YDLAKAEILNIINIRP+S VEIDP
Sbjct: 86 EKCKKYDLAKAEILNIINIRPASPVEIDP 114
>gb|EXB51154.1| DNA-directed RNA polymerase III subunit RPC9 [Morus notabilis]
Length = 163
Score = 138 bits (348), Expect = 8e-30
Identities = 67/91 (73%), Positives = 79/91 (86%)
Frame = +1
Query: 1153 MKILKANAGAPTNFEVLDFLRSRGAGKDPTRCLTSIASSEYKVYDYLEQTAACNQTREII 1332
MKIL+ANAGA NFEVL+FL+S+GA KDPTR L +A SEYKVYDYL +TAAC+QT+E +
Sbjct: 1 MKILEANAGALANFEVLNFLKSKGASKDPTRVLADVAPSEYKVYDYLVETAACDQTKENV 60
Query: 1333 HEFLEKCKSYDLAKAEILNIINIRPSSVVEI 1425
+EFLEKCK YDLAKAE+LNIINIR S+ VEI
Sbjct: 61 NEFLEKCKKYDLAKAEVLNIINIRASTAVEI 91
>ref|XP_006420026.1| hypothetical protein CICLE_v10006087mg [Citrus clementina]
gi|567853814|ref|XP_006420027.1| hypothetical protein
CICLE_v10006087mg [Citrus clementina]
gi|557521899|gb|ESR33266.1| hypothetical protein
CICLE_v10006087mg [Citrus clementina]
gi|557521900|gb|ESR33267.1| hypothetical protein
CICLE_v10006087mg [Citrus clementina]
Length = 163
Score = 136 bits (343), Expect = 3e-29
Identities = 67/92 (72%), Positives = 77/92 (83%)
Frame = +1
Query: 1153 MKILKANAGAPTNFEVLDFLRSRGAGKDPTRCLTSIASSEYKVYDYLEQTAACNQTREII 1332
MKIL+ NAG TNFEV DFLRS+GA KDPTR L + SE+KVYDYL ++AACNQTR II
Sbjct: 1 MKILEVNAGPLTNFEVFDFLRSKGASKDPTRVLVPVTPSEFKVYDYLVESAACNQTRNII 60
Query: 1333 HEFLEKCKSYDLAKAEILNIINIRPSSVVEID 1428
+EFLEK K + LAKAEILNIINIRPSS+VE+D
Sbjct: 61 NEFLEKSKKFKLAKAEILNIINIRPSSLVEVD 92
>ref|XP_006489453.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC9-like isoform
X1 [Citrus sinensis] gi|568872598|ref|XP_006489454.1|
PREDICTED: DNA-directed RNA polymerase III subunit
RPC9-like isoform X2 [Citrus sinensis]
Length = 165
Score = 136 bits (342), Expect = 4e-29
Identities = 67/92 (72%), Positives = 77/92 (83%)
Frame = +1
Query: 1153 MKILKANAGAPTNFEVLDFLRSRGAGKDPTRCLTSIASSEYKVYDYLEQTAACNQTREII 1332
MKIL+ANAG TNFEV DFLR +GA KDPTR L + SE+KVYDYL ++AACNQTR II
Sbjct: 1 MKILEANAGPLTNFEVFDFLRCKGASKDPTRVLVPVTPSEFKVYDYLVESAACNQTRNII 60
Query: 1333 HEFLEKCKSYDLAKAEILNIINIRPSSVVEID 1428
+EFLEK K + LAKAEILNIINIRPSS+VE+D
Sbjct: 61 NEFLEKSKKFKLAKAEILNIINIRPSSLVEVD 92
>ref|XP_004145392.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc9-like [Cucumis
sativus] gi|449523065|ref|XP_004168545.1| PREDICTED:
DNA-directed RNA polymerase III subunit rpc9-like
[Cucumis sativus]
Length = 160
Score = 135 bits (340), Expect = 7e-29
Identities = 67/93 (72%), Positives = 76/93 (81%)
Frame = +1
Query: 1153 MKILKANAGAPTNFEVLDFLRSRGAGKDPTRCLTSIASSEYKVYDYLEQTAACNQTREII 1332
MKIL+ANAG TNFEVLDFLRS+GA KDPTR L + SEYKV+DYL QT+ACNQTRE I
Sbjct: 1 MKILEANAGPLTNFEVLDFLRSKGAAKDPTRVLAKVLPSEYKVFDYLNQTSACNQTREAI 60
Query: 1333 HEFLEKCKSYDLAKAEILNIINIRPSSVVEIDP 1431
F EK K YDLAKAEILNIIN+RP++ VE+ P
Sbjct: 61 INFAEKSKEYDLAKAEILNIINLRPTTPVELFP 93
>ref|XP_002306270.1| hypothetical protein POPTR_0005s06860g [Populus trichocarpa]
gi|222855719|gb|EEE93266.1| hypothetical protein
POPTR_0005s06860g [Populus trichocarpa]
Length = 159
Score = 134 bits (337), Expect = 2e-28
Identities = 67/91 (73%), Positives = 75/91 (82%)
Frame = +1
Query: 1153 MKILKANAGAPTNFEVLDFLRSRGAGKDPTRCLTSIASSEYKVYDYLEQTAACNQTREII 1332
MKI NAGA TNFEVLDFLRSRGA +D +R L +A+SEYKVYDYL +T ACN TRE I
Sbjct: 1 MKIKNPNAGALTNFEVLDFLRSRGASRDVSRVLAPVAASEYKVYDYLVETPACNLTREKI 60
Query: 1333 HEFLEKCKSYDLAKAEILNIINIRPSSVVEI 1425
+EFLE+CK YDLAKAE+LNIINIRPS VEI
Sbjct: 61 NEFLERCKKYDLAKAELLNIINIRPSQTVEI 91
>ref|NP_001078783.1| RNA polymerase II, Rpb4, core protein [Arabidopsis thaliana]
gi|332010295|gb|AED97678.1| RNA polymerase II, Rpb4, core
protein [Arabidopsis thaliana]
Length = 106
Score = 134 bits (336), Expect = 2e-28
Identities = 67/94 (71%), Positives = 78/94 (82%)
Frame = +1
Query: 1153 MKILKANAGAPTNFEVLDFLRSRGAGKDPTRCLTSIASSEYKVYDYLEQTAACNQTREII 1332
MKI+KANAGA TNFEVLDFL SRGA KD TR + IA SEYKVYDYL +TAA QTRE I
Sbjct: 1 MKIVKANAGALTNFEVLDFLNSRGASKDTTRVIAPIARSEYKVYDYLVETAASTQTRESI 60
Query: 1333 HEFLEKCKSYDLAKAEILNIINIRPSSVVEIDPQ 1434
++F +KCK + LAKAEILNIIN+RPSS+VE+ P+
Sbjct: 61 NKFADKCKDFKLAKAEILNIINLRPSSIVELLPR 94
>ref|NP_201100.1| RNA polymerase II, Rpb4, core protein [Arabidopsis thaliana]
gi|334188590|ref|NP_001190602.1| RNA polymerase II, Rpb4,
core protein [Arabidopsis thaliana]
gi|32815911|gb|AAP88340.1| At5g62950 [Arabidopsis
thaliana] gi|110743157|dbj|BAE99470.1| hypothetical
protein [Arabidopsis thaliana]
gi|332010294|gb|AED97677.1| RNA polymerase II, Rpb4, core
protein [Arabidopsis thaliana]
gi|332010296|gb|AED97679.1| RNA polymerase II, Rpb4, core
protein [Arabidopsis thaliana]
Length = 139
Score = 133 bits (335), Expect = 3e-28
Identities = 67/93 (72%), Positives = 77/93 (82%)
Frame = +1
Query: 1153 MKILKANAGAPTNFEVLDFLRSRGAGKDPTRCLTSIASSEYKVYDYLEQTAACNQTREII 1332
MKI+KANAGA TNFEVLDFL SRGA KD TR + IA SEYKVYDYL +TAA QTRE I
Sbjct: 1 MKIVKANAGALTNFEVLDFLNSRGASKDTTRVIAPIARSEYKVYDYLVETAASTQTRESI 60
Query: 1333 HEFLEKCKSYDLAKAEILNIINIRPSSVVEIDP 1431
++F +KCK + LAKAEILNIIN+RPSS+VE+ P
Sbjct: 61 NKFADKCKDFKLAKAEILNIINLRPSSIVELLP 93
>gb|AFK37258.1| unknown [Lotus japonicus]
Length = 162
Score = 132 bits (332), Expect = 6e-28
Identities = 65/93 (69%), Positives = 76/93 (81%)
Frame = +1
Query: 1153 MKILKANAGAPTNFEVLDFLRSRGAGKDPTRCLTSIASSEYKVYDYLEQTAACNQTREII 1332
MKIL+ANAGA TNFEVLDFLR +GA KDPTR + +A SEYKVYDYL TAA NQTRE I
Sbjct: 1 MKILEANAGALTNFEVLDFLRGKGASKDPTRVIAKVAQSEYKVYDYLVNTAASNQTRESI 60
Query: 1333 HEFLEKCKSYDLAKAEILNIINIRPSSVVEIDP 1431
+EF+ K +DLAKAE+LNIINIRP++ VE+ P
Sbjct: 61 NEFMASVKKHDLAKAEVLNIINIRPAAAVEMFP 93
>ref|XP_006394332.1| hypothetical protein EUTSA_v10005100mg [Eutrema salsugineum]
gi|557090971|gb|ESQ31618.1| hypothetical protein
EUTSA_v10005100mg [Eutrema salsugineum]
Length = 140
Score = 131 bits (329), Expect = 1e-27
Identities = 63/93 (67%), Positives = 76/93 (81%)
Frame = +1
Query: 1153 MKILKANAGAPTNFEVLDFLRSRGAGKDPTRCLTSIASSEYKVYDYLEQTAACNQTREII 1332
MKI+K NAG TNFEVLDFL SRGA +D TR + IA SEYKVYDYL +TAAC QTRE +
Sbjct: 1 MKIVKENAGTLTNFEVLDFLNSRGASRDTTRVIAPIAKSEYKVYDYLVETAACTQTRESV 60
Query: 1333 HEFLEKCKSYDLAKAEILNIINIRPSSVVEIDP 1431
+EF +KCK++ + KAEILNIIN+RPSS+VE+ P
Sbjct: 61 NEFADKCKAFKVWKAEILNIINLRPSSIVELMP 93
>ref|XP_006295190.1| hypothetical protein CARUB_v10024270mg [Capsella rubella]
gi|565475100|ref|XP_006295191.1| hypothetical protein
CARUB_v10024270mg [Capsella rubella]
gi|482563898|gb|EOA28088.1| hypothetical protein
CARUB_v10024270mg [Capsella rubella]
gi|482563899|gb|EOA28089.1| hypothetical protein
CARUB_v10024270mg [Capsella rubella]
Length = 144
Score = 131 bits (329), Expect = 1e-27
Identities = 65/93 (69%), Positives = 76/93 (81%)
Frame = +1
Query: 1153 MKILKANAGAPTNFEVLDFLRSRGAGKDPTRCLTSIASSEYKVYDYLEQTAACNQTREII 1332
MKI+KANAGA TNFEVLDFL SRGA KD TR + IA SEYKVYDYL +TAA QTRE +
Sbjct: 1 MKIVKANAGALTNFEVLDFLNSRGASKDTTRVIAPIAISEYKVYDYLVETAASTQTRESV 60
Query: 1333 HEFLEKCKSYDLAKAEILNIINIRPSSVVEIDP 1431
++F +KCK + +AKAEILNIIN+RPSS VE+ P
Sbjct: 61 NKFADKCKDFKVAKAEILNIINLRPSSAVELAP 93
>gb|AFK40316.1| unknown [Lotus japonicus]
Length = 162
Score = 130 bits (326), Expect = 3e-27
Identities = 64/93 (68%), Positives = 75/93 (80%)
Frame = +1
Query: 1153 MKILKANAGAPTNFEVLDFLRSRGAGKDPTRCLTSIASSEYKVYDYLEQTAACNQTREII 1332
MKIL+ANAGA TNFEVLDFLR +GA KDPTR + +A SEYKVYDYL TAA NQTRE I
Sbjct: 1 MKILEANAGALTNFEVLDFLRGKGASKDPTRVIAKVAQSEYKVYDYLVNTAASNQTRESI 60
Query: 1333 HEFLEKCKSYDLAKAEILNIINIRPSSVVEIDP 1431
+EF+ K +DLAKAE+LNIINI P++ VE+ P
Sbjct: 61 NEFMASVKKHDLAKAEVLNIINITPAAAVEMFP 93
>ref|XP_004250017.1| PREDICTED: uncharacterized protein LOC101258513 [Solanum
lycopersicum]
Length = 168
Score = 129 bits (325), Expect = 4e-27
Identities = 69/109 (63%), Positives = 79/109 (72%), Gaps = 16/109 (14%)
Frame = +1
Query: 1153 MKILKANAGAPTNFEVLDFLRSRGAGKDPTRCLTSIASSEYKVYDYLEQTAACNQTREII 1332
MKIL+ANAGA TNFEVLDFLRSRGAG+DPTR + IA SE+KVYDYLEQTAACNQTR++I
Sbjct: 1 MKILEANAGALTNFEVLDFLRSRGAGRDPTRVIVPIAPSEFKVYDYLEQTAACNQTRQVI 60
Query: 1333 HEFLEKCKSYDLAKA----------------EILNIINIRPSSVVEIDP 1431
E + KCK L K EI+NIINIRPSS+VE+ P
Sbjct: 61 GELMGKCKCIKLEKCECIKPKQCECIKLEGDEIVNIINIRPSSLVELYP 109
>ref|XP_006360506.1| PREDICTED: uncharacterized protein LOC102587541 isoform X1 [Solanum
tuberosum] gi|565389533|ref|XP_006360507.1| PREDICTED:
uncharacterized protein LOC102587541 isoform X2 [Solanum
tuberosum]
Length = 173
Score = 129 bits (324), Expect = 5e-27
Identities = 69/109 (63%), Positives = 79/109 (72%), Gaps = 16/109 (14%)
Frame = +1
Query: 1153 MKILKANAGAPTNFEVLDFLRSRGAGKDPTRCLTSIASSEYKVYDYLEQTAACNQTREII 1332
MKILKA+AGA TNFEVLDFLRSRGAG+DPTR + IA SE+KVYDYLEQTAACNQTR++I
Sbjct: 1 MKILKADAGALTNFEVLDFLRSRGAGRDPTRVIVPIAPSEFKVYDYLEQTAACNQTRQVI 60
Query: 1333 HEFLEKCKSYDLAK----------------AEILNIINIRPSSVVEIDP 1431
E + KCKS L K E +NIINIRPSS+VE+ P
Sbjct: 61 GELMGKCKSIKLEKCKCIKPEKCKCIKLKHVETVNIINIRPSSLVELYP 109
>ref|XP_006281277.1| hypothetical protein CARUB_v10027325mg [Capsella rubella]
gi|482549981|gb|EOA14175.1| hypothetical protein
CARUB_v10027325mg [Capsella rubella]
Length = 145
Score = 129 bits (323), Expect = 6e-27
Identities = 64/93 (68%), Positives = 76/93 (81%)
Frame = +1
Query: 1153 MKILKANAGAPTNFEVLDFLRSRGAGKDPTRCLTSIASSEYKVYDYLEQTAACNQTREII 1332
MKI+KANAGA TNFEVLDFL SRGA KD TR + IA SEYKVYDYL +TAA QTRE +
Sbjct: 1 MKIVKANAGALTNFEVLDFLNSRGASKDTTRVIAPIAISEYKVYDYLLETAASTQTRESV 60
Query: 1333 HEFLEKCKSYDLAKAEILNIINIRPSSVVEIDP 1431
++F +KCK + +AKAEILNIIN+RPSS V++ P
Sbjct: 61 NKFADKCKDFKVAKAEILNIINLRPSSKVDLAP 93
>ref|XP_002525535.1| conserved hypothetical protein [Ricinus communis]
gi|223535214|gb|EEF36893.1| conserved hypothetical
protein [Ricinus communis]
Length = 138
Score = 129 bits (323), Expect = 6e-27
Identities = 62/87 (71%), Positives = 73/87 (83%)
Frame = +1
Query: 1171 NAGAPTNFEVLDFLRSRGAGKDPTRCLTSIASSEYKVYDYLEQTAACNQTREIIHEFLEK 1350
NAGA TNFEVLDFL++RGAGKD +R + +A SEYKVYDYL +T AC QTRE I+EF+EK
Sbjct: 7 NAGALTNFEVLDFLKARGAGKDSSRVIAPVAPSEYKVYDYLMETPACRQTREQINEFMEK 66
Query: 1351 CKSYDLAKAEILNIINIRPSSVVEIDP 1431
CK+Y LAKAEILNIINI P +VE+DP
Sbjct: 67 CKAYKLAKAEILNIINIVPRELVELDP 93
>dbj|BAB10864.1| unnamed protein product [Arabidopsis thaliana]
Length = 166
Score = 128 bits (321), Expect = 1e-26
Identities = 64/90 (71%), Positives = 74/90 (82%)
Frame = +1
Query: 1162 LKANAGAPTNFEVLDFLRSRGAGKDPTRCLTSIASSEYKVYDYLEQTAACNQTREIIHEF 1341
+KANAGA TNFEVLDFL SRGA KD TR + IA SEYKVYDYL +TAA QTRE I++F
Sbjct: 31 VKANAGALTNFEVLDFLNSRGASKDTTRVIAPIARSEYKVYDYLVETAASTQTRESINKF 90
Query: 1342 LEKCKSYDLAKAEILNIINIRPSSVVEIDP 1431
+KCK + LAKAEILNIIN+RPSS+VE+ P
Sbjct: 91 ADKCKDFKLAKAEILNIINLRPSSIVELLP 120
>gb|ESW35387.1| hypothetical protein PHAVU_001G230900g [Phaseolus vulgaris]
Length = 154
Score = 127 bits (318), Expect = 2e-26
Identities = 64/93 (68%), Positives = 75/93 (80%)
Frame = +1
Query: 1153 MKILKANAGAPTNFEVLDFLRSRGAGKDPTRCLTSIASSEYKVYDYLEQTAACNQTREII 1332
MKIL+ANAGA TNFEVLDFLR++GA KDPTR + + SEYKVYDYL TAA +QTRE I
Sbjct: 1 MKILEANAGALTNFEVLDFLRAKGASKDPTRVIAKVEQSEYKVYDYLVDTAASDQTRESI 60
Query: 1333 HEFLEKCKSYDLAKAEILNIINIRPSSVVEIDP 1431
+EFL K +DLAKAE+LNI+N RP+S VEI P
Sbjct: 61 NEFLTCIKRHDLAKAEVLNILNTRPTSEVEIFP 93