BLASTX nr result
ID: Catharanthus22_contig00006067
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus22_contig00006067
(4786 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004293181.1| PREDICTED: uncharacterized protein LOC101298... 95 8e-49
gb|AAC63678.1| putative non-LTR retroelement reverse transcripta... 94 6e-48
gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana] 89 4e-44
gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana] 88 2e-43
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ... 90 4e-43
emb|CAB72467.1| putative protein [Arabidopsis thaliana] 86 5e-42
gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcrip... 86 3e-39
gb|AAC95175.1| putative non-LTR retroelement reverse transcripta... 77 2e-38
emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulga... 102 5e-38
gb|AAF87143.1|AC002423_8 T23E23.16 [Arabidopsis thaliana] 91 2e-37
emb|CAB45965.1| putative reverse transcriptase [Arabidopsis thal... 89 5e-35
gb|AAD21699.1| Contains reverse transcriptase domain (rvt) PF|00... 87 7e-35
gb|ABD33261.1| RNA-directed DNA polymerase (Reverse transcriptas... 97 4e-34
ref|XP_004253224.1| PREDICTED: uncharacterized protein LOC101268... 103 6e-34
gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thali... 68 3e-33
gb|AAC19278.1| T14P8.10 [Arabidopsis thaliana] gi|7269009|emb|CA... 81 1e-32
gb|AAC78274.1| putative reverse transcriptase [Arabidopsis thali... 81 1e-32
gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transc... 90 2e-32
gb|AAC33226.1| putative non-LTR retroelement reverse transcripta... 85 1e-30
dbj|BAB01845.1| non-LTR retroelement reverse transcriptase-like ... 82 3e-29
>ref|XP_004293181.1| PREDICTED: uncharacterized protein LOC101298394 [Fragaria vesca
subsp. vesca]
Length = 958
Score = 94.7 bits (234), Expect(7) = 8e-49
Identities = 43/103 (41%), Positives = 65/103 (63%), Gaps = 1/103 (0%)
Frame = -3
Query: 1847 ANSSPCCTFKIDIHKGYDSDEWNFVERVMLAFGFPN*FVRWVTLCVCSDKYSININGSLE 1668
A+ P CTF +D+ K D+ EW+F+ + AF P+ + W+ C+ S K+S+ +NG L
Sbjct: 409 ADGQPRCTFMVDMMKANDTVEWDFIIATLQAFNIPSTLIGWIKSCISSAKFSVCVNGELA 468
Query: 1667 GYFPGRKGLCQGNPISPYLFVLTMEYLSRNCALIVN-DPLFKF 1542
G+F R+GL QG+P+SPYLFV+ ME LS +N P F++
Sbjct: 469 GFFARRRGLRQGDPLSPYLFVIAMEVLSLCIQRRINCSPCFRY 511
Score = 60.8 bits (146), Expect(7) = 8e-49
Identities = 31/91 (34%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Frame = -1
Query: 2119 AILEVFRIGKLVN*INAIIVSLIPKVENPDRIKDYRPISCCNVVQK-FQRFCTGNVTYSK 1943
A+ E F G L+ +N+ I++L+PKV NP + D+RPISCCN K + + +
Sbjct: 316 AVKEFFSYGSLLMELNSTIITLVPKVANPTTMSDFRPISCCNTFYKIIAKLLANRLKGTL 375
Query: 1942 PSVVGVTEGVLV*NRSMVHNILLCLELLKGY 1850
+VG ++ + R + NILL E++ Y
Sbjct: 376 HLIVGPSQSTFIPGRRIGDNILLAQEIICDY 406
Score = 42.4 bits (98), Expect(7) = 8e-49
Identities = 21/65 (32%), Positives = 32/65 (49%)
Frame = -1
Query: 997 GLGFKEVLS*NKATLCKFVFSCASGVAMDPIWCQWIREYRLKHVGIWEIPVRLSDSWWWS 818
GLG K++ NKA + +++ S + W W++ Y LK W P+ SW W
Sbjct: 695 GLGIKDLHCWNKALMISHIWNLVS--SSSNFWTDWVKVYLLKGNSFWNAPLPSICSWNWR 752
Query: 817 QLLHI 803
+LL I
Sbjct: 753 KLLKI 757
Score = 40.4 bits (93), Expect(7) = 8e-49
Identities = 25/72 (34%), Positives = 37/72 (51%)
Frame = -2
Query: 1269 LTVADCDPLISQILSRIQHWIARHLSYLGRVXXXXXXXXXIKRFWSQIFPLPFIILHKI* 1090
L + DC PL+ +I +RI+ W + LS+ GR+ I+ +W+ LP +L I
Sbjct: 603 LRMQDCSPLLDRIETRIKSWENKVLSFAGRLQLIQSVLSSIQVYWASHLILPKKVLKDIE 662
Query: 1089 TLCR*LLWVAGN 1054
R LW AGN
Sbjct: 663 KRLRCFLW-AGN 673
Score = 32.0 bits (71), Expect(7) = 8e-49
Identities = 16/41 (39%), Positives = 24/41 (58%)
Frame = -1
Query: 1435 ANFSTVSSLIINEMNSAMFLGGVYPGTMDAILKELKFQEGT 1313
+NF ++SSL N S +FL GV + D++L+ F GT
Sbjct: 548 SNFESLSSLKANVSESKIFLAGVDGNSSDSVLQVTNFSLGT 588
Score = 27.7 bits (60), Expect(7) = 8e-49
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -2
Query: 2241 TSMEVKEAFFDIDASKAPNLDGCTTFLFKKCW 2146
T +++ FF ++ +K+P DG F+K W
Sbjct: 274 THDDIRAVFFSMNPNKSPGPDGFNGCFFQKAW 305
Score = 26.9 bits (58), Expect(7) = 8e-49
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -2
Query: 1542 HLKCRCTQTTYVSFADDLMLFGYGDLPSI 1456
H +C +++ FADDL++F GD S+
Sbjct: 512 HWRCDQLNLSHLCFADDLLMFCNGDENSV 540
>gb|AAC63678.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1216
Score = 94.0 bits (232), Expect(5) = 6e-48
Identities = 40/83 (48%), Positives = 57/83 (68%)
Frame = -3
Query: 1829 CTFKIDIHKGYDSDEWNFVERVMLAFGFPN*FVRWVTLCVCSDKYSININGSLEGYFPGR 1650
C KIDI K +DS +W+F+ V+ A FP F+ W++LC+ + +SI +NG L GYF
Sbjct: 315 CAMKIDISKAFDSLQWSFLTHVLAAMNFPGEFIHWISLCMSTASFSIQVNGELAGYFRSA 374
Query: 1649 KGLCQGNPISPYLFVLTMEYLSR 1581
+GL QG +SPYLFV++M+ LSR
Sbjct: 375 RGLRQGCSLSPYLFVISMDVLSR 397
Score = 62.0 bits (149), Expect(5) = 6e-48
Identities = 35/93 (37%), Positives = 50/93 (53%), Gaps = 1/93 (1%)
Frame = -1
Query: 2125 IEAILEVFRIGKLVN*INAIIVSLIPKVENPDRIKDYRPISCCNVVQK-FQRFCTGNVTY 1949
I AI F G L +N+ I++LIPK + IKDYRPISCCNV+ K + +
Sbjct: 214 IIAIQSFFAKGFLPKGVNSTILALIPKKKEAREIKDYRPISCCNVLYKAISKILANRLKR 273
Query: 1948 SKPSVVGVTEGVLV*NRSMVHNILLCLELLKGY 1850
P + + V +R ++ N+LL EL+K Y
Sbjct: 274 ILPKFIVGNQSAFVKDRLLIENVLLATELVKDY 306
Score = 53.9 bits (128), Expect(5) = 6e-48
Identities = 43/159 (27%), Positives = 61/159 (38%)
Frame = -2
Query: 1542 HLKCRCTQTTYVSFADDLMLFGYGDLPSICCVKKFWLIFLLCLA*SSMR*IVLCF*VGFI 1363
H +C+ T++ FADDLM+ G + S+ + K F L + G
Sbjct: 411 HPRCKTLGLTHLCFADDLMILTDGKIRSVDGIVKVLNQFAAKLGLKICMEKTTLYLAGVS 470
Query: 1362 QVLWMLXXXXXXXXRXXXXXXXXXXXXXLKMLTVADCDPLISQILSRIQHWIARHLSYLG 1183
L K LT +D PLI QI RI W +R+LS+ G
Sbjct: 471 DHSRQLMSSRYSFGVGKLPVRYLGLPLVTKRLTTSDYSPLIDQIRRRIGMWTSRYLSFAG 530
Query: 1182 RVXXXXXXXXXIKRFWSQIFPLPFIILHKI*TLCR*LLW 1066
R+ I FW F LP +++I + LLW
Sbjct: 531 RLSLINSVLWSITNFWMNAFRLPRECINEINRISSALLW 569
Score = 43.9 bits (102), Expect(5) = 6e-48
Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Frame = -1
Query: 1048 KKSLVS*DNVC*LVENQGLGFKEVLS*NKATLCKFVFSCASGVAMDPIWCQWIREYRLKH 869
KK+ VS D +C + GLG + + NK + K ++ S D +W +W R LK
Sbjct: 577 KKAKVSWDEICKPKKEGGLGLQSLREANKVSSLKLIWRLLS--CQDSLWVKWTRMNLLKK 634
Query: 868 VGIWEIPVRLS-DSWWWSQLL 809
W I + SW W +LL
Sbjct: 635 ESFWSIGTHSTLGSWIWRRLL 655
Score = 29.3 bits (64), Expect(5) = 6e-48
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = -2
Query: 2280 CSYYSTRGSSCSLTSMEVKEAFFDIDASKAPNLDGCTTFLFKKCW 2146
CS R + +T E+K+ F + K+P DG T+ +K W
Sbjct: 162 CSEDDHRLLTRVVTGEEIKKVIFSMPKDKSPGPDGYTSEFYKASW 206
>gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]
Length = 872
Score = 89.0 bits (219), Expect(5) = 4e-44
Identities = 36/83 (43%), Positives = 55/83 (66%)
Frame = -3
Query: 1829 CTFKIDIHKGYDSDEWNFVERVMLAFGFPN*FVRWVTLCVCSDKYSININGSLEGYFPGR 1650
C KIDI K +DS +W+F+ ++A F F+ W+ LC+ + +S+ +NG L GYF +
Sbjct: 241 CAIKIDISKAFDSVQWSFLTNTLVAMNFSPTFIHWINLCITTASFSVQVNGDLVGYFQSK 300
Query: 1649 KGLCQGNPISPYLFVLTMEYLSR 1581
+GL QG +SPYLFV+ M+ LS+
Sbjct: 301 RGLRQGCSLSPYLFVICMDVLSK 323
Score = 59.7 bits (143), Expect(5) = 4e-44
Identities = 32/86 (37%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Frame = -1
Query: 2104 FRIGKLVN*INAIIVSLIPKVENPDRIKDYRPISCCNVVQK-FQRFCTGNVTYSKPSVVG 1928
F+ G L IN+II++LIPK ++DYRPISCCNV+ K + + P +
Sbjct: 147 FQKGFLPKGINSIILALIPKKLAAKEMRDYRPISCCNVLYKVISKIIANRLKLLLPRFIA 206
Query: 1927 VTEGVLV*NRSMVHNILLCLELLKGY 1850
+ V +R ++ N+LL EL+K Y
Sbjct: 207 ENQSAFVKDRLLIENLLLATELVKDY 232
Score = 48.1 bits (113), Expect(5) = 4e-44
Identities = 45/165 (27%), Positives = 62/165 (37%), Gaps = 6/165 (3%)
Frame = -2
Query: 1542 HLKCRCTQTTYVSFADDLMLFGYGDLPSICCVKKFWLIFL------LCLA*SSMR*IVLC 1381
H KC+ T++SFADDLM+ G SI + + + F + L S++
Sbjct: 337 HPKCQRLGLTHLSFADDLMVLSDGKTRSIEGILEVFDEFCKRSGLRISLEKSTL------ 390
Query: 1380 F*VGFIQVLWMLXXXXXXXXRXXXXXXXXXXXXXLKMLTVADCDPLISQILSRIQHWIAR 1201
+ G ++ K LT AD PL+ QI RI W R
Sbjct: 391 YMAGVSPIIKQEIAAKFLFDVGQLPVRYLGLPLVTKRLTSADYSPLLEQIKKRIATWTFR 450
Query: 1200 HLSYLGRVXXXXXXXXXIKRFWSQIFPLPFIILHKI*TLCR*LLW 1066
S+ GR I FW F LP + +I LC LW
Sbjct: 451 FFSFAGRFNLIKSVLWSICNFWLAAFRLPRQCIREIDKLCSSFLW 495
Score = 45.1 bits (105), Expect(5) = 4e-44
Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Frame = -1
Query: 1066 GGWKRSKKSLVS*DNVC*LVENQGLGFKEVLS*NKATLCKFVFSCASGVAMDPIWCQWIR 887
G S K+ +S D VC GLG + + N + K V+ S + +W +W+
Sbjct: 497 GSEMSSHKAKISWDIVCKPKAEGGLGLRNLKEANDVSCLKLVWRIISN--SNSLWTKWVA 554
Query: 886 EYRLKHVGIWEIPVRLS-DSWWWSQLLHILD 797
EY ++ IW + S SW W ++L I D
Sbjct: 555 EYLIRKKSIWSLKQSTSMGSWIWRKILKIRD 585
Score = 28.1 bits (61), Expect(5) = 4e-44
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -2
Query: 2244 LTSMEVKEAFFDIDASKAPNLDGCTTFLFKKCW 2146
++S E+K F + K+P DG T+ +K W
Sbjct: 100 VSSEEIKTVLFSMPKDKSPGPDGYTSEFYKATW 132
>gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana]
Length = 740
Score = 87.8 bits (216), Expect(4) = 2e-43
Identities = 38/85 (44%), Positives = 53/85 (62%)
Frame = -3
Query: 1838 SPCCTFKIDIHKGYDSDEWNFVERVMLAFGFPN*FVRWVTLCVCSDKYSININGSLEGYF 1659
SP C KIDI K +DS +W F+ + A FP F W+ LC+ + +S+ +NG L G+F
Sbjct: 164 SPRCAMKIDISKAFDSVQWQFLLNTLEALNFPENFCHWIKLCISTATFSVQVNGELAGFF 223
Query: 1658 PGRKGLCQGNPISPYLFVLTMEYLS 1584
++GL QG +SPYLFV+ M LS
Sbjct: 224 GSKRGLRQGCALSPYLFVICMNVLS 248
Score = 62.0 bits (149), Expect(4) = 2e-43
Identities = 34/93 (36%), Positives = 50/93 (53%), Gaps = 1/93 (1%)
Frame = -1
Query: 2125 IEAILEVFRIGKLVN*INAIIVSLIPKVENPDRIKDYRPISCCNVVQK-FQRFCTGNVTY 1949
I AI F G L +NA I++LIPK + ++DYRPISCCNV+ K + +
Sbjct: 66 IAAIKSFFIKGFLPKGLNATILALIPKKDEATLMRDYRPISCCNVIYKVISKIIANRLKV 125
Query: 1948 SKPSVVGVTEGVLV*NRSMVHNILLCLELLKGY 1850
P+ + + V R ++ N+LL EL+K Y
Sbjct: 126 MLPTFILQNQSAFVRERLLIENVLLATELVKDY 158
Score = 52.4 bits (124), Expect(4) = 2e-43
Identities = 43/165 (26%), Positives = 65/165 (39%), Gaps = 6/165 (3%)
Frame = -2
Query: 1542 HLKCRCTQTTYVSFADDLMLFGYGDLPSICCVKKFWLIFL------LCLA*SSMR*IVLC 1381
H KC+ T++ FADDLM+F G S+ V + F + L S++
Sbjct: 263 HPKCKKLSLTHLCFADDLMVFIDGQQRSVEGVINIFKEFAGKSGLHISLEKSTL------ 316
Query: 1380 F*VGFIQVLWMLXXXXXXXXRXXXXXXXXXXXXXLKMLTVADCDPLISQILSRIQHWIAR 1201
+ G ++ K +T AD PL+ ++ S+I W AR
Sbjct: 317 YLAGVSELNRNNILSAFPFASGQLPVRYLGLPLLTKQMTTADYSPLLDKVRSKISSWTAR 376
Query: 1200 HLSYLGRVXXXXXXXXXIKRFWSQIFPLPFIILHKI*TLCR*LLW 1066
LSY GR+ + FW + LP + +I LC LW
Sbjct: 377 SLSYAGRLALINSVIVSLSNFWMSAYRLPAGCIKEIEKLCSAFLW 421
Score = 45.4 bits (106), Expect(4) = 2e-43
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Frame = -1
Query: 1048 KKSLVS*DNVC*LVENQGLGFKEVLS*NKATLCKFVFSCASGVAMDPIWCQWIREYRLKH 869
KK+ ++ ++C L + GLG K +L NK + K ++ S +W W+ Y ++
Sbjct: 429 KKAKITWTSLCKLKQEGGLGIKSLLEANKVSCLKLIWRLVS--RQSSLWVNWVWTYIIRK 486
Query: 868 VGIWEIPVRLS-DSWWWSQLLHILD 797
W R S SW W +LL D
Sbjct: 487 GSFWSANDRSSLGSWMWKKLLKYRD 511
>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
thaliana]
Length = 1223
Score = 89.7 bits (221), Expect(4) = 4e-43
Identities = 37/83 (44%), Positives = 53/83 (63%)
Frame = -3
Query: 1829 CTFKIDIHKGYDSDEWNFVERVMLAFGFPN*FVRWVTLCVCSDKYSININGSLEGYFPGR 1650
C KIDI K +DS +W F+ V GFP F+ W+ +C+ + +S+ +NG L GYF
Sbjct: 594 CAIKIDISKAFDSVQWPFLINVFTILGFPREFIHWINICITTASFSVQVNGELAGYFQSS 653
Query: 1649 KGLCQGNPISPYLFVLTMEYLSR 1581
+GL QG +SPYLFV+ M+ LS+
Sbjct: 654 RGLRQGCALSPYLFVICMDVLSK 676
Score = 60.8 bits (146), Expect(4) = 4e-43
Identities = 33/91 (36%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Frame = -1
Query: 2119 AILEVFRIGKLVN*INAIIVSLIPKVENPDRIKDYRPISCCNVVQK-FQRFCTGNVTYSK 1943
A+ F G L IN+ I++LIPK +KDYRPISCCNV+ K + +
Sbjct: 495 AVQSFFTKGFLPKGINSTILALIPKKTEAREMKDYRPISCCNVLYKVISKIIANRLKLVL 554
Query: 1942 PSVVGVTEGVLV*NRSMVHNILLCLELLKGY 1850
P + + V +R ++ N+LL EL+K Y
Sbjct: 555 PKFIAGNQSAFVKDRLLIENLLLATELVKDY 585
Score = 53.5 bits (127), Expect(4) = 4e-43
Identities = 44/165 (26%), Positives = 63/165 (38%), Gaps = 6/165 (3%)
Frame = -2
Query: 1542 HLKCRCTQTTYVSFADDLMLFGYGDLPSICCVKKF------WLIFLLCLA*SSMR*IVLC 1381
H KC+ T++SFADDLM+ G + SI + K W + L S++
Sbjct: 690 HPKCKTMGLTHLSFADDLMVLSDGKIRSIERIIKVFDEFAKWSGLRISLEKSTV------ 743
Query: 1380 F*VGFIQVLWMLXXXXXXXXRXXXXXXXXXXXXXLKMLTVADCDPLISQILSRIQHWIAR 1201
+ G K L+ DC PL+ Q+ RI W +R
Sbjct: 744 YLAGLSATARNEVADRFPFSSGQLPVRYLGLPLITKRLSTTDCLPLLEQVRKRIGSWTSR 803
Query: 1200 HLSYLGRVXXXXXXXXXIKRFWSQIFPLPFIILHKI*TLCR*LLW 1066
LSY GR+ I FW F LP + ++ +C LW
Sbjct: 804 FLSYAGRLNLISSVLWSICNFWLAAFRLPRKCIRELEKMCSAFLW 848
Score = 42.4 bits (98), Expect(4) = 4e-43
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Frame = -1
Query: 1051 SKKSLVS*DNVC*LVENQGLGFKEVLS*NKATLCKFVFSCASGVAMDPIWCQWIREYRLK 872
S K+ +S VC + GLG + + N K V+ S + +W +W+ ++ L+
Sbjct: 855 SNKAKISWHMVCKPKDEGGLGLRSLKEANDVCCLKLVWKIVSH--SNSLWVKWVDQHLLR 912
Query: 871 HVGIWEIPVRLSD-SWWWSQLL 809
+ WE+ +S SW W +LL
Sbjct: 913 NASFWEVKQTVSQGSWIWKKLL 934
Score = 60.8 bits (146), Expect(2) = 4e-13
Identities = 36/102 (35%), Positives = 52/102 (50%)
Frame = -2
Query: 3519 WNIRALNDPLKQRVVHKCSFVNKLSLFFVLETRIRVNNWESLVKKFKKDWLLDANGGMDR 3340
WN+R LN K V+ K N ++ETR++ + LV K KDW + N +R
Sbjct: 6 WNVRGLNKSSKHSVIKKWIEENNFQFGCLVETRVKESKVSQLVGKLFKDWSILTNYEHNR 65
Query: 3339 SFRIIVLWKSIEVQVSILMKTNRLIYCEVFTAD*LYHFFCDF 3214
RI VLW+ V++S + K+ +L+ C V D FFC F
Sbjct: 66 RGRIWVLWRK-NVRLSPIYKSCQLLTCSVKLEDRQDEFFCSF 106
Score = 43.9 bits (102), Expect(2) = 4e-13
Identities = 46/155 (29%), Positives = 63/155 (40%), Gaps = 13/155 (8%)
Frame = -3
Query: 3227 FFVTFNYAANDVDGQRA*WTINIDLAQSI---SEPRLIFGDFNVVLNSVEKVVKS-GAMC 3060
FF +F YA+N V+ ++ W+ D S +P + GDFN L+ E M
Sbjct: 102 FFCSFVYASNYVEERKVLWSELKDHYDSPIIRHKPWTLLGDFNETLDIAEHSQSFVHPMV 161
Query: 3059 NVGSK-LHHVFETCQPQELRFLGNKLT*SNSHTYC----KLDRALFNDSWFLTFHHFLAE 2895
G + V C ++ G T N + KLDR L ND W TF +
Sbjct: 162 TPGMRDFQQVINYCSLTDMAAQGPLFTWCNKREHGLIMKKLDRVLINDCWNQTFSQSYSV 221
Query: 2894 FGVPGVSNHSPIMVRLLEKLFLQKV----PFKFKN 2802
F G S+H + L + KV PFKF N
Sbjct: 222 FEAGGCSDHLRCRISLNSEAG-NKVQGLKPFKFVN 255
>emb|CAB72467.1| putative protein [Arabidopsis thaliana]
Length = 762
Score = 86.3 bits (212), Expect(5) = 5e-42
Identities = 36/83 (43%), Positives = 53/83 (63%)
Frame = -3
Query: 1829 CTFKIDIHKGYDSDEWNFVERVMLAFGFPN*FVRWVTLCVCSDKYSININGSLEGYFPGR 1650
C KIDI K DS +W+F+ + A FP F+ W+ LC+ + +S+ +NG L G+F
Sbjct: 147 CAIKIDISKASDSVQWSFLINTLTAMHFPEMFIHWIRLCITTPSFSVQVNGELAGFFQSS 206
Query: 1649 KGLCQGNPISPYLFVLTMEYLSR 1581
+GL QG +SPYLFV+ M+ LS+
Sbjct: 207 RGLRQGCALSPYLFVICMDVLSK 229
Score = 61.2 bits (147), Expect(5) = 5e-42
Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 1/93 (1%)
Frame = -1
Query: 2125 IEAILEVFRIGKLVN*INAIIVSLIPKVENPDRIKDYRPISCCNVVQK-FQRFCTGNVTY 1949
I AI F +G L +N+ I++LIPK +KDYRPISCCNV+ K + +
Sbjct: 46 ILAIQSFFALGFLPKGVNSTILALIPKKLESKEMKDYRPISCCNVMYKVISKILANRLKL 105
Query: 1948 SKPSVVGVTEGVLV*NRSMVHNILLCLELLKGY 1850
P + + V +R ++ N+LL +L+K Y
Sbjct: 106 LLPQFIAGNQSSFVKDRLLIENVLLATDLVKDY 138
Score = 49.3 bits (116), Expect(5) = 5e-42
Identities = 43/164 (26%), Positives = 57/164 (34%)
Frame = -2
Query: 1542 HLKCRCTQTTYVSFADDLMLFGYGDLPSICCVKKFWLIFLLCLA*SSMR*IVLCF*VGFI 1363
H C+ T++SFADDLM+ G SI + + + +F F G
Sbjct: 243 HPHCKRMGLTHLSFADDLMILTDGQCRSIEGIIEVFDLFSKWSGLKISMEKSTIFSAGLS 302
Query: 1362 QVLWMLXXXXXXXXRXXXXXXXXXXXXXLKMLTVADCDPLISQILSRIQHWIARHLSYLG 1183
K L+ D PLI QI RI W +R LS+ G
Sbjct: 303 STSRAQLHTHFPFEVGELPIRYLGLPLVTKRLSSVDYAPLIEQIRKRIGSWSSRFLSFAG 362
Query: 1182 RVXXXXXXXXXIKRFWSQIFPLPFIILHKI*TLCR*LLWVAGNV 1051
R FW F LP + +I LC LW N+
Sbjct: 363 RFNLISSIIWSSCNFWLSAFQLPRACIQEIEKLCSSFLWSGTNL 406
Score = 36.6 bits (83), Expect(5) = 5e-42
Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Frame = -1
Query: 1051 SKKSLVS*DNVC*LVENQGLGFKEVLS*NKATLCKFVFSCASGVAMDPIWCQWIREYRLK 872
SKK+ +S + VC GLG + + N K V+ S D +W +W+ LK
Sbjct: 408 SKKAKISWNQVCKPKSEGGLGLRSLKEANDVCCLKLVWRIIS--HGDSLWVKWVEHNLLK 465
Query: 871 HVGIWEIPVRLS-DSWWWSQLL 809
W + + SW W ++L
Sbjct: 466 REIFWIVKENANLGSWIWKKIL 487
Score = 29.3 bits (64), Expect(5) = 5e-42
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = -2
Query: 2244 LTSMEVKEAFFDIDASKAPNLDGCTTFLFKKCW 2146
+++ E+K+ F + K+P DG T+ FK+ W
Sbjct: 6 VSAEEIKKVLFSMPNDKSPGPDGFTSEFFKESW 38
>gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcript_fact.hmm, score:
72.31) [Arabidopsis thaliana]
Length = 928
Score = 85.5 bits (210), Expect(4) = 3e-39
Identities = 37/83 (44%), Positives = 53/83 (63%)
Frame = -3
Query: 1829 CTFKIDIHKGYDSDEWNFVERVMLAFGFPN*FVRWVTLCVCSDKYSININGSLEGYFPGR 1650
C KIDI K +DS +W F+ V+ A FP F W+TLC+ + +S+ +NG L G F
Sbjct: 482 CALKIDISKAFDSVQWKFLINVLEAMNFPPEFTHWITLCITTASFSVQVNGELAGVFSSA 541
Query: 1649 KGLCQGNPISPYLFVLTMEYLSR 1581
+ L QG +SPYLFV++M+ LS+
Sbjct: 542 RELRQGCSLSPYLFVISMDVLSK 564
Score = 62.0 bits (149), Expect(4) = 3e-39
Identities = 47/165 (28%), Positives = 67/165 (40%), Gaps = 6/165 (3%)
Frame = -2
Query: 1542 HLKCRCTQTTYVSFADDLMLFGYGDLPSICCVKKF------WLIFLLCLA*SSMR*IVLC 1381
H KCR T++SFADDLM+ G + SI + K W + + S+M
Sbjct: 578 HPKCRAIGLTHLSFADDLMILSDGKVRSIDGIVKVLYEFAKWSGLKISMEKSTM------ 631
Query: 1380 F*VGFIQVLWMLXXXXXXXXRXXXXXXXXXXXXXLKMLTVADCDPLISQILSRIQHWIAR 1201
+ G ++ K LT +DC PLI Q+ +I+ W +R
Sbjct: 632 YLAGVQASVYQEIVQKFSFDVGKLPVRYLGLPLVSKRLTASDCLPLIEQLRKKIEAWTSR 691
Query: 1200 HLSYLGRVXXXXXXXXXIKRFWSQIFPLPFIILHKI*TLCR*LLW 1066
LS+ GR+ I FW F LP + +I LC LW
Sbjct: 692 FLSFAGRLNLISSTLWSICNFWMAAFRLPRACIREIDKLCSAFLW 736
Score = 61.2 bits (147), Expect(4) = 3e-39
Identities = 34/93 (36%), Positives = 50/93 (53%), Gaps = 1/93 (1%)
Frame = -1
Query: 2125 IEAILEVFRIGKLVN*INAIIVSLIPKVENPDRIKDYRPISCCNVVQK-FQRFCTGNVTY 1949
I AI F G L IN+ I++LIPK + +KDYRPISCCNV+ K + +
Sbjct: 381 ILAIQSFFAKGFLPKGINSTILALIPKKKEAKEMKDYRPISCCNVLYKVISKIIANRLKL 440
Query: 1948 SKPSVVGVTEGVLV*NRSMVHNILLCLELLKGY 1850
P + + V +R ++ N+LL E++K Y
Sbjct: 441 VLPKFIVGNQSAFVKDRLLIENVLLATEIVKDY 473
Score = 24.6 bits (52), Expect(4) = 3e-39
Identities = 9/34 (26%), Positives = 18/34 (52%)
Frame = -2
Query: 2244 LTSMEVKEAFFDIDASKAPNLDGCTTFLFKKCWS 2143
+++ E+ + F + K+P DG T +K W+
Sbjct: 341 VSAEEIHKVVFSMPNDKSPGPDGYTAEFYKGAWN 374
>gb|AAC95175.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1352
Score = 76.6 bits (187), Expect(4) = 2e-38
Identities = 33/79 (41%), Positives = 49/79 (62%)
Frame = -3
Query: 1820 KIDIHKGYDSDEWNFVERVMLAFGFPN*FVRWVTLCVCSDKYSININGSLEGYFPGRKGL 1641
KIDI K +D +W F+ V+ A P F+ W+ LC+ + +S+ +NG L G+F +GL
Sbjct: 744 KIDISKAFDFVQWPFLINVLKAIHLPEMFIHWIELCIGTASFSVQVNGELSGFFRSERGL 803
Query: 1640 CQGNPISPYLFVLTMEYLS 1584
QG +SPYL+V+ M LS
Sbjct: 804 RQGCSLSPYLYVICMNVLS 822
Score = 57.0 bits (136), Expect(4) = 2e-38
Identities = 33/91 (36%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Frame = -1
Query: 2119 AILEVFRIGKLVN*INAIIVSLIPKVENPDRIKDYRPISCCNVVQKF-QRFCTGNVTYSK 1943
AI F G L IN I++LI K +KDYRPISCCNV+ K + +
Sbjct: 642 AIQSFFLKGFLPKGINTTILALISKKHEVSGMKDYRPISCCNVLYKIVSKLMANRLKEIL 701
Query: 1942 PSVVGVTEGVLV*NRSMVHNILLCLELLKGY 1850
P+ + + + +R M+ N+LL EL+K Y
Sbjct: 702 PASIAPNQSAFIKDRLMMENLLLASELVKDY 732
Score = 48.5 bits (114), Expect(4) = 2e-38
Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Frame = -1
Query: 1051 SKKSLVS*DNVC*LVENQGLGFKEVLS*NKATLCKFVFSCASGVAMDPIWCQWIREYRLK 872
+KK+ ++ VC L E GLG K + N+ +L K ++ S A D +W +W+ ++ ++
Sbjct: 1002 TKKAKIAWSEVCKLKEEGGLGLKPLKEANEVSLLKLIWRILS--ARDSLWVKWVNKHLIR 1059
Query: 871 HVGIWEIPVRLS-DSWWWSQLLHILDK 794
W + SW W ++L DK
Sbjct: 1060 KETFWSVKENTGLGSWLWRKILKQRDK 1086
Score = 48.1 bits (113), Expect(4) = 2e-38
Identities = 47/177 (26%), Positives = 73/177 (41%), Gaps = 18/177 (10%)
Frame = -2
Query: 1542 HLKCRCTQTTYVSFADDLMLFGYGDLPSI----CCVKKF----WL--------IFLLCLA 1411
H +CR T++ FADD+M+F G SI +KF WL IF+ ++
Sbjct: 837 HPRCRNMNLTHLCFADDIMVFSDGTSKSIQGTLAIFEKFAAMSWLKISLEKSTIFMAGIS 896
Query: 1410 *SSMR*IV--LCF*VGFIQVLWMLXXXXXXXXRXXXXXXXXXXXXXLKMLTVADCDPLIS 1237
++ I+ F +G + V ++ K +T +D PL+
Sbjct: 897 PNAKTSILQQFPFELGTLPVKYL------------------GLPLLTKRMTQSDYLPLVE 938
Query: 1236 QILSRIQHWIARHLSYLGRVXXXXXXXXXIKRFWSQIFPLPFIILHKI*TLCR*LLW 1066
+I +RI W R LS+ GR+ I FW +F LP L +I + LW
Sbjct: 939 KIRARITSWTNRFLSFAGRLQLIKSVLSSITNFWLSVFRLPKACLQEIEKMFSAFLW 995
Score = 53.5 bits (127), Expect(2) = 5e-11
Identities = 44/151 (29%), Positives = 64/151 (42%), Gaps = 9/151 (5%)
Frame = -3
Query: 3227 FFVTFNYAANDVDGQRA*WTI---NIDLAQSISEPRLIFGDFNVVLNSVE--KVVKSGAM 3063
FFV+F YA+N VD +R W + DL ++ +I GDFN +L+ + V S +
Sbjct: 339 FFVSFIYASNYVDERRELWEDLRNHYDLPMFRNKGWMILGDFNEILDGEDHSNFVNSPFI 398
Query: 3062 CNVGSKLHHVFETCQPQELRFLGNKLT*SNSH----TYCKLDRALFNDSWFLTFHHFLAE 2895
V C ++ + G T N KLDR L N+ W F +
Sbjct: 399 PQGMRDFQDVVRYCSLADMSYHGPVFTWCNKREEGLVNKKLDRVLVNEVWTRKFPAVYSI 458
Query: 2894 FGVPGVSNHSPIMVRLLEKLFLQKVPFKFKN 2802
F G+S+H ++ K PFKF N
Sbjct: 459 FEAGGISDHLRCRIKFASGNTQPKGPFKFNN 489
Score = 44.3 bits (103), Expect(2) = 5e-11
Identities = 28/86 (32%), Positives = 44/86 (51%)
Frame = -2
Query: 3471 KCSFVNKLSLFFVLETRIRVNNWESLVKKFKKDWLLDANGGMDRSFRIIVLWKSIEVQVS 3292
K S + L+ ++ETR+ N ++ K +DW N R RI V+WK+ V+V+
Sbjct: 259 KSSHKDSLTFGGLIETRVDENRASRIISKVFRDWSSMTNYEHHRLGRIWVVWKN-TVRVT 317
Query: 3291 ILMKTNRLIYCEVFTAD*LYHFFCDF 3214
+ K+ +LI C V T + FF F
Sbjct: 318 PVYKSGQLITCSVLTEENAEDFFVSF 343
>emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1110
Score = 102 bits (253), Expect(4) = 5e-38
Identities = 49/99 (49%), Positives = 63/99 (63%)
Frame = -3
Query: 1838 SPCCTFKIDIHKGYDSDEWNFVERVMLAFGFPN*FVRWVTLCVCSDKYSININGSLEGYF 1659
SP C K+DI K YDS EW+F+E ++ FGFP+ FV W+ CV + YS+ +NG F
Sbjct: 576 SPRCIMKVDIRKAYDSVEWSFLETLLYEFGFPSRFVGWIMECVSTVSYSVLVNGIPTQPF 635
Query: 1658 PGRKGLCQGNPISPYLFVLTMEYLSRNCALIVNDPLFKF 1542
RKGL QG+P+SP+LF L MEYLSR + P F F
Sbjct: 636 QARKGLRQGDPMSPFLFALCMEYLSRCLEELKGSPDFNF 674
Score = 65.5 bits (158), Expect(4) = 5e-38
Identities = 33/94 (35%), Positives = 54/94 (57%), Gaps = 1/94 (1%)
Frame = -1
Query: 2116 ILEVFRIGKLVN*INAIIVSLIPKVENPDRIKDYRPISCCNVVQK-FQRFCTGNVTYSKP 1940
I E F ++ IN I+V+L+PKV++ R+K++RPI+CC V+ K + T +
Sbjct: 481 IQEFFNNSRMHRPINCIVVTLLPKVQHATRVKEFRPIACCTVIYKIISKMLTNRMKGIIG 540
Query: 1939 SVVGVTEGVLV*NRSMVHNILLCLELLKGYSQTH 1838
VV + + R + NILL EL++GY++ H
Sbjct: 541 EVVNEAQSGFIPGRHIADNILLASELIRGYTRKH 574
Score = 36.2 bits (82), Expect(4) = 5e-38
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -2
Query: 2244 LTSMEVKEAFFDIDASKAPNLDGCTTFLFKKCWSQVR 2134
+ S E+ EA I KAP LDG + FKK W ++
Sbjct: 438 VASTEIDEALAGIGNDKAPGLDGFNAYFFKKSWGSIK 474
Score = 25.4 bits (54), Expect(4) = 5e-38
Identities = 18/65 (27%), Positives = 28/65 (43%)
Frame = -1
Query: 2509 SHSKWLTEEHENLTFFHALLMH*RQISSSIFLLRDENRDNINVSPSIVNHMLAFYQGMLG 2330
S WL + N F + R + I +L E+ I + + +L FY+ +LG
Sbjct: 348 SRITWLQQGDTNSKLFFTAVKA-RHAINRIDMLNTEDGRVIQDADEVQEEILEFYKKLLG 406
Query: 2329 TSAFT 2315
T A T
Sbjct: 407 TRAST 411
Score = 53.1 bits (126), Expect(2) = 4e-10
Identities = 26/90 (28%), Positives = 46/90 (51%)
Frame = -2
Query: 3522 AWNIRALNDPLKQRVVHKCSFVNKLSLFFVLETRIRVNNWESLVKKFKKDWLLDANGGMD 3343
+WN+R +NDP K + + + +K+ + +LETR+R N + K KDW N
Sbjct: 5 SWNVRGMNDPFKIKEIKNFLYSHKIVVCALLETRVREQNASKVQGKLGKDWKWLNNYSHS 64
Query: 3342 RSFRIIVLWKSIEVQVSILMKTNRLIYCEV 3253
RI + W+ V V++ +L+ C++
Sbjct: 65 ARERIWIGWRPAWVNVTLTHTQEQLMVCDI 94
Score = 41.6 bits (96), Expect(2) = 4e-10
Identities = 32/141 (22%), Positives = 59/141 (41%), Gaps = 5/141 (3%)
Frame = -3
Query: 3209 YAANDVDGQRA*WTINIDLAQSISEPRLIFGDFNVVLNSVEKVVKSGAMCNVGSKLHHVF 3030
Y + + +++ W+ + Q +P +I GDFN V +S +++ +
Sbjct: 107 YGLHTIADRKSLWSGLLQCVQQ-QDPMIIIGDFNAVCHSNDRLYGTLVTDAETEDFQQFL 165
Query: 3029 ETCQPQELRFLGNKLT*SNS-----HTYCKLDRALFNDSWFLTFHHFLAEFGVPGVSNHS 2865
E R + + SNS ++D+A N W + ++ PG+S+HS
Sbjct: 166 LQSNLIESRSTWSYYSWSNSSIGRDRVLSRIDKAYVNLVWLGMYAEVSVQYLPPGISDHS 225
Query: 2864 PIMVRLLEKLFLQKVPFKFKN 2802
P++ L+ PFKF N
Sbjct: 226 PLLFNLMTGRPQGGKPFKFMN 246
Score = 57.8 bits (138), Expect(2) = 3e-07
Identities = 26/70 (37%), Positives = 39/70 (55%)
Frame = -2
Query: 1275 KMLTVADCDPLISQILSRIQHWIARHLSYLGRVXXXXXXXXXIKRFWSQIFPLPFIILHK 1096
K LT A C PL+ I +R Q W+A+ LSY GR+ ++ +W+ IFPL ++
Sbjct: 764 KKLTYAQCKPLVEMITNRAQTWMAKLLSYAGRLQLIKSILSSMQNYWAHIFPLSKKVIQA 823
Query: 1095 I*TLCR*LLW 1066
+ +CR LW
Sbjct: 824 VEKVCRKFLW 833
Score = 26.9 bits (58), Expect(2) = 3e-07
Identities = 12/47 (25%), Positives = 22/47 (46%)
Frame = -1
Query: 967 NKATLCKFVFSCASGVAMDPIWCQWIREYRLKHVGIWEIPVRLSDSW 827
N+A + K ++ A D +W +WI Y +K I + + +W
Sbjct: 868 NRAAMLKLLW--AIEFKRDKLWVRWIHSYYIKRQDILTVNISNQTTW 912
>gb|AAF87143.1|AC002423_8 T23E23.16 [Arabidopsis thaliana]
Length = 653
Score = 91.3 bits (225), Expect(4) = 2e-37
Identities = 36/83 (43%), Positives = 58/83 (69%)
Frame = -3
Query: 1829 CTFKIDIHKGYDSDEWNFVERVMLAFGFPN*FVRWVTLCVCSDKYSININGSLEGYFPGR 1650
C KIDI K ++S +W+F+ ++L+ FP FV W+ LC+ + +S+ +NG L G+F +
Sbjct: 121 CAIKIDISKAFNSVQWSFIRNILLSMDFPMEFVHWIMLCISTASFSVQVNGELVGFFQSK 180
Query: 1649 KGLCQGNPISPYLFVLTMEYLSR 1581
+GL QG +SPYLFV++M+ LS+
Sbjct: 181 RGLRQGCSLSPYLFVMSMDVLSK 203
Score = 53.5 bits (127), Expect(4) = 2e-37
Identities = 41/159 (25%), Positives = 61/159 (38%)
Frame = -2
Query: 1542 HLKCRCTQTTYVSFADDLMLFGYGDLPSICCVKKFWLIFLLCLA*SSMR*IVLCF*VGFI 1363
H +C+ T++SFADDLM+ G + SI + + + IF + G
Sbjct: 217 HSRCKELSLTHLSFADDLMVLSDGKVRSIDGIVEVFDIFAKFSGLKISMEKSTIYLAGVT 276
Query: 1362 QVLWMLXXXXXXXXRXXXXXXXXXXXXXLKMLTVADCDPLISQILSRIQHWIARHLSYLG 1183
+ ++ K LT D PL+ I +I W R+LSY G
Sbjct: 277 EDVYHEIQNRYQFDVGQLPVRYLGLPLVTKRLTATDYSPLLEHIKKKIGTWTTRYLSYAG 336
Query: 1182 RVXXXXXXXXXIKRFWSQIFPLPFIILHKI*TLCR*LLW 1066
R+ I FW F LP + +I +C LW
Sbjct: 337 RLNLITSVLWSICNFWLAAFRLPRECIREIDKICSAFLW 375
Score = 44.3 bits (103), Expect(4) = 2e-37
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Frame = -1
Query: 2068 IIVSLIPKVENPDR--IKDYRPISCCNVVQK-FQRFCTGNVTYSKPSVVGVTEGVLV*NR 1898
I + +P + +P I YRP+SCCNV+ K + + P + + V +R
Sbjct: 37 ICIHFLPLLSSPTGHFISHYRPLSCCNVIYKIISKIIANRLKMVLPKFIAGNQTAFVKDR 96
Query: 1897 SMVHNILLCLELLKGY 1850
++ N+LL EL+K Y
Sbjct: 97 LLIENLLLATELVKDY 112
Score = 38.1 bits (87), Expect(4) = 2e-37
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Frame = -1
Query: 1048 KKSLVS*DNVC*LVENQGLGFKEVLS*NKATLCKFVFSCASGVAMDPIWCQWIREYRLKH 869
+K+ V +VC + GLG + + N+ + K ++ S + +W +WI +Y LKH
Sbjct: 383 RKTRVCWGDVCKPKQEGGLGLRSLKEMNEVSCLKLIWRIVSHT--NSLWVRWIEQYLLKH 440
Query: 868 VGIWEIPVRLS-DSWWW 821
W + + DS W
Sbjct: 441 DTFWSVQTTTNMDSVLW 457
>emb|CAB45965.1| putative reverse transcriptase [Arabidopsis thaliana]
gi|7267919|emb|CAB78261.1| putative reverse transcriptase
[Arabidopsis thaliana]
Length = 662
Score = 89.0 bits (219), Expect(3) = 5e-35
Identities = 38/83 (45%), Positives = 54/83 (65%)
Frame = -3
Query: 1829 CTFKIDIHKGYDSDEWNFVERVMLAFGFPN*FVRWVTLCVCSDKYSININGSLEGYFPGR 1650
C KIDI K +DS +W+F+ V+L FP FV W+ LCV + +S+ +N L GYF
Sbjct: 112 CAIKIDISKAFDSVQWSFLRNVLLTLDFPQEFVHWIMLCVTTASFSVQVNRELAGYFNSL 171
Query: 1649 KGLCQGNPISPYLFVLTMEYLSR 1581
+GL QG ++PYLFV+ M+ LS+
Sbjct: 172 RGLRQGCSLTPYLFVIVMDVLSK 194
Score = 59.3 bits (142), Expect(3) = 5e-35
Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Frame = -1
Query: 2089 LVN*INAIIVSLIPKVENPDRIKDYRPISCCNVVQK-FQRFCTGNVTYSKPSVVGVTEGV 1913
+ N +N+ I++LIPK IKDYRPISCCNV+ K + + P + +
Sbjct: 23 IYNGVNSTILALIPKKMEAKEIKDYRPISCCNVLYKVISKIIANRLKRVLPQFIAGNQSA 82
Query: 1912 LV*NRSMVHNILLCLELLKGY 1850
+ +R ++ N+LL EL+K Y
Sbjct: 83 FIKDRLLIENLLLATELVKDY 103
Score = 50.8 bits (120), Expect(3) = 5e-35
Identities = 47/179 (26%), Positives = 67/179 (37%), Gaps = 4/179 (2%)
Frame = -2
Query: 1542 HLKCRCTQTTYVSFADDLMLFGYGDLPSICCVKKFWLIFLLCLA*SSMR*IVLCF*VGFI 1363
H KC+ T++SFADD+M+ G L S+ + + + F + G
Sbjct: 208 HPKCKNLGLTHLSFADDIMVLTDGKLRSLEGIVEVFDSFAKQSGLKISMAKTTIYFAGIS 267
Query: 1362 QVLWMLXXXXXXXXRXXXXXXXXXXXXXLKMLTVADCDPLISQILSRIQHWIARHLSYLG 1183
+ + K T D PL+ QI RI W AR LSY G
Sbjct: 268 KSVCKEFEDQFHFAVGRLPVRYLCLPLVTKRFTSQDYSPLLEQIKRRIGTWTARFLSYAG 327
Query: 1182 RVXXXXXXXXXIKRFWSQIFPLPFIILHKI*TLCR*LLW----VAGNVVRRVWSHRTMC 1018
R+ I FW F LP + +I LC LW ++ N + W T+C
Sbjct: 328 RLNLVSSVLWSICNFWLSAFRLPRECVREIDKLCSAFLWSGPELSTNKAKIAW--ETVC 384
>gb|AAD21699.1| Contains reverse transcriptase domain (rvt) PF|00078 [Arabidopsis
thaliana]
Length = 1253
Score = 87.0 bits (214), Expect(5) = 7e-35
Identities = 37/87 (42%), Positives = 55/87 (63%)
Frame = -3
Query: 1844 NSSPCCTFKIDIHKGYDSDEWNFVERVMLAFGFPN*FVRWVTLCVCSDKYSININGSLEG 1665
N P K+D+ K +DS W+F+ + A G P+ FV W+T C+ + +S+ +NG+ G
Sbjct: 536 NIDPRGMLKVDLRKAFDSIRWDFIISALKAIGIPDRFVYWITQCISTPTFSVCVNGNTGG 595
Query: 1664 YFPGRKGLCQGNPISPYLFVLTMEYLS 1584
+F +GL QGNP+SP+LFVL ME S
Sbjct: 596 FFKSTRGLRQGNPLSPFLFVLAMEVFS 622
Score = 49.7 bits (117), Expect(5) = 7e-35
Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 5/98 (5%)
Frame = -1
Query: 2122 EAILEVFRIGKLVN*INAIIVSLIPKVENPDRIKDYRPISC-----CNVVQKFQRFCTGN 1958
+A+ E F L+ NA + LIPK+ N ++ D+RPISC + + R T
Sbjct: 437 DAVSEFFTSSVLLKQWNATTLVLIPKITNASKMNDFRPISCNDFGPITLYKVIARLLTNR 496
Query: 1957 VTYSKPSVVGVTEGVLV*NRSMVHNILLCLELLKGYSQ 1844
+ V+ + + R + N+LL EL++GY++
Sbjct: 497 LQCLLSQVISPFQSAFLPGRFLAENVLLATELVQGYNR 534
Score = 37.0 bits (84), Expect(5) = 7e-35
Identities = 37/164 (22%), Positives = 61/164 (37%)
Frame = -2
Query: 1542 HLKCRCTQTTYVSFADDLMLFGYGDLPSICCVKKFWLIFLLCLA*SSMR*IVLCF*VGFI 1363
H K +++ FADD+M+F G S+ + + F R + G
Sbjct: 637 HPKTSPLSISHLMFADDIMVFFDGGSSSLHGISEALEDFAFWSGLVLNREKTHLYLAGLD 696
Query: 1362 QVLWMLXXXXXXXXRXXXXXXXXXXXXXLKMLTVADCDPLISQILSRIQHWIARHLSYLG 1183
++ + L +A+ PL+ ++ R + W + LS+ G
Sbjct: 697 RI---------------------EASTIARKLRIAEYGPLLEKLAKRFRSWSVKCLSFAG 735
Query: 1182 RVXXXXXXXXXIKRFWSQIFPLPFIILHKI*TLCR*LLWVAGNV 1051
RV I FW F LP + +I LC LW +GN+
Sbjct: 736 RVQLIASVISGIINFWISTFILPKGCVKRIEALCARFLW-SGNI 778
Score = 33.1 bits (74), Expect(5) = 7e-35
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = -2
Query: 2280 CSYYSTRGSSCSLTSMEVKEAFFDIDASKAPNLDGCTTFLFKKCWSQV 2137
CS+ + + S + ++K AFF ++K DG FK+ WS +
Sbjct: 384 CSHDQKKELAMSFSRQDIKSAFFSFPSNKTSGPDGFPVEFFKETWSVI 431
Score = 31.2 bits (69), Expect(5) = 7e-35
Identities = 15/60 (25%), Positives = 30/60 (50%)
Frame = -1
Query: 2509 SHSKWLTEEHENLTFFHALLMH*RQISSSIFLLRDENRDNINVSPSIVNHMLAFYQGMLG 2330
S W+ E N ++FH + R+ ++I ++ D+N I+ I H + ++ +LG
Sbjct: 305 SRVTWMGEGDSNTSYFHRMADS-RKAVNTIHIIIDDNGVKIDTQLGIKEHCIEYFSNLLG 363
>gb|ABD33261.1| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
truncatula]
Length = 402
Score = 96.7 bits (239), Expect(3) = 4e-34
Identities = 47/99 (47%), Positives = 62/99 (62%)
Frame = -3
Query: 1838 SPCCTFKIDIHKGYDSDEWNFVERVMLAFGFPN*FVRWVTLCVCSDKYSININGSLEGYF 1659
SP C KID+ K Y+S EW F++ +ML GF FV WV C+ + Y+ NING L F
Sbjct: 259 SPRCMVKIDLQKAYNSVEWPFIKHLMLELGFSYKFVNWVMGCLTTASYTFNINGDLTRPF 318
Query: 1658 PGRKGLCQGNPISPYLFVLTMEYLSRNCALIVNDPLFKF 1542
+KGL QG+PISPYLFV+ MEYL+ + + F+F
Sbjct: 319 AAKKGLRQGDPISPYLFVICMEYLNICLIQLRKNAAFRF 357
Score = 61.6 bits (148), Expect(3) = 4e-34
Identities = 34/95 (35%), Positives = 54/95 (56%), Gaps = 1/95 (1%)
Frame = -1
Query: 2125 IEAILEVFRIGKLVN*INAIIVSLIPKVENPDRIKDYRPISCCNVVQK-FQRFCTGNVTY 1949
I+AIL+ F+ G + IN ++L+PK N +K++RPI+CC+V+ K + T +
Sbjct: 161 IDAILDFFKTGFMPKIINCTYMTLLPKEVNVTSVKNFRPIACCSVIYKIISKILTSRMQG 220
Query: 1948 SKPSVVGVTEGVLV*NRSMVHNILLCLELLKGYSQ 1844
SVV + V R + NI+L EL+K YS+
Sbjct: 221 VLNSVVSENQSAFVKGRVIFDNIILSHELVKSYSR 255
Score = 37.7 bits (86), Expect(3) = 4e-34
Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = -2
Query: 2250 CS-LTSMEVKEAFFDIDASKAPNLDGCTTFLFKKCWS 2143
CS T++EVK F +D+SKAP +DG FK W+
Sbjct: 118 CSKFTAVEVKNVLFSMDSSKAPGIDGYNVHFFKCSWN 154
>ref|XP_004253224.1| PREDICTED: uncharacterized protein LOC101268376 [Solanum
lycopersicum]
Length = 717
Score = 103 bits (257), Expect(4) = 6e-34
Identities = 50/101 (49%), Positives = 64/101 (63%)
Frame = -3
Query: 1844 NSSPCCTFKIDIHKGYDSDEWNFVERVMLAFGFPN*FVRWVTLCVCSDKYSININGSLEG 1665
N SP C KID+HK YDS EW F+E+VM GFP+ F +WV CV + Y+I +NG
Sbjct: 382 NVSPRCMLKIDLHKAYDSVEWPFLEQVMEGLGFPDLFTKWVMKCVKTVNYTIVVNGQNTQ 441
Query: 1664 YFPGRKGLCQGNPISPYLFVLTMEYLSRNCALIVNDPLFKF 1542
F KGL QG+P+SP+LF + MEYLSR + D FK+
Sbjct: 442 RFDAAKGLRQGDPMSPFLFAIAMEYLSRLLKGLKEDKSFKY 482
Score = 56.6 bits (135), Expect(4) = 6e-34
Identities = 46/162 (28%), Positives = 69/162 (42%), Gaps = 3/162 (1%)
Frame = -2
Query: 1542 HLKCRCTQTTYVSFADDLMLFGYGDLPSICCVKKFWLIFLLC--LA*SSMR*IVLCF*VG 1369
H K T++ FADDL+LF GDL SI ++K + F L + + + C G
Sbjct: 483 HPKYAKLDVTHLCFADDLLLFSRGDLNSIKALQKCFTEFSQASGLQANLNKSSIYC---G 539
Query: 1368 FIQV-LWMLXXXXXXXXRXXXXXXXXXXXXXLKMLTVADCDPLISQILSRIQHWIARHLS 1192
+Q+ + K L PLI ++++RI W A+ LS
Sbjct: 540 GVQMEVRQQIIQQLGYTIEELPFKYLGVPLSSKKLNTIQWYPLIEKVMARINSWTAKKLS 599
Query: 1191 YLGRVXXXXXXXXXIKRFWSQIFPLPFIILHKI*TLCR*LLW 1066
Y GR ++ W+Q+F +P I+ I LCR LW
Sbjct: 600 YAGRAQLVKTVLFGVQALWAQLFIIPAKIIKLIEGLCRSYLW 641
Score = 34.3 bits (77), Expect(4) = 6e-34
Identities = 19/66 (28%), Positives = 33/66 (50%)
Frame = -1
Query: 1051 SKKSLVS*DNVC*LVENQGLGFKEVLS*NKATLCKFVFSCASGVAMDPIWCQWIREYRLK 872
+KK+L++ D VC GLG + N++ + K + A+ D +W +WI Y +K
Sbjct: 648 TKKALIAWDKVCSPKYEGGLGLINLKIWNRSAVTKLCWDLAN--KEDKLWIKWIHAYYIK 705
Query: 871 HVGIWE 854
W+
Sbjct: 706 GQREWK 711
Score = 20.8 bits (42), Expect(4) = 6e-34
Identities = 8/32 (25%), Positives = 19/32 (59%)
Frame = -1
Query: 1939 SVVGVTEGVLV*NRSMVHNILLCLELLKGYSQ 1844
+++ ++ + R + NI+L EL+K Y++
Sbjct: 349 TIISDSQAGFIPGRKIGDNIILAHELVKAYTR 380
Score = 62.4 bits (150), Expect = 2e-06
Identities = 40/140 (28%), Positives = 70/140 (50%)
Frame = -3
Query: 3215 FNYAANDVDGQRA*WTINIDLAQSISEPRLIFGDFNVVLNSVEKVVKSGAMCNVGSKLHH 3036
+N N + +++ W+ I + +S++ P +I GD N +L+ +++ A V
Sbjct: 45 WNCLNNYKNARKSLWSDMIQIGKSVNHPWIIVGDLNAMLSPKDRL----AGVPVNENEIK 100
Query: 3035 VFETCQPQELRFLGNKLT*SNSHTYCKLDRALFNDSWFLTFHHFLAEFGVPGVSNHSPIM 2856
F C ++ +G + N+ ++DRA N+ W + H + E+G PGVS HSP+
Sbjct: 101 DFSNC----VKVMGLNES-GNARISSRIDRAFGNEDWMDEWGHVILEYGNPGVSYHSPMH 155
Query: 2855 VRLLEKLFLQKVPFKFKNFW 2796
+ L + KV FKF N W
Sbjct: 156 LILQQSYQQIKVNFKFFNIW 175
>gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thaliana]
gi|20197043|gb|AAM14892.1| putative reverse transcriptase
[Arabidopsis thaliana]
Length = 1412
Score = 68.2 bits (165), Expect(4) = 3e-33
Identities = 32/85 (37%), Positives = 46/85 (54%)
Frame = -3
Query: 1838 SPCCTFKIDIHKGYDSDEWNFVERVMLAFGFPN*FVRWVTLCVCSDKYSININGSLEGYF 1659
SP C KID+ K +DS +W F+ + A P F+ W+ LC+ + +S+ +N
Sbjct: 857 SPRCAMKIDLSKAFDSVQWPFLLNTLAALDIPEKFIHWINLCISTASFSVQVN------- 909
Query: 1658 PGRKGLCQGNPISPYLFVLTMEYLS 1584
GL QG +SPYLFV+ M LS
Sbjct: 910 ----GLRQGCSLSPYLFVICMNVLS 930
Score = 58.9 bits (141), Expect(4) = 3e-33
Identities = 32/91 (35%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Frame = -1
Query: 2119 AILEVFRIGKLVN*INAIIVSLIPKVENPDRIKDYRPISCCNVVQK-FQRFCTGNVTYSK 1943
AI F G L +N+ I++LIPK +KDYRPISCCNV+ K + +
Sbjct: 761 AIKSFFTYGFLPKGLNSTILALIPKRTYAKEMKDYRPISCCNVLYKAISKLLANRLKCLL 820
Query: 1942 PSVVGVTEGVLV*NRSMVHNILLCLELLKGY 1850
P + + + +R ++ N+LL EL+K Y
Sbjct: 821 PEFIAPNQSAFISDRLLMENLLLASELVKDY 851
Score = 52.0 bits (123), Expect(4) = 3e-33
Identities = 41/159 (25%), Positives = 59/159 (37%)
Frame = -2
Query: 1542 HLKCRCTQTTYVSFADDLMLFGYGDLPSICCVKKFWLIFLLCLA*SSMR*IVLCF*VGFI 1363
H +CR T++ FADD+M+F G S+ V + F + F
Sbjct: 945 HPRCRNMGLTHLCFADDIMVFSAGSAHSLEGVLAIFKDFAAFSGLNISLEKSTLFMASIS 1004
Query: 1362 QVLWMLXXXXXXXXRXXXXXXXXXXXXXLKMLTVADCDPLISQILSRIQHWIARHLSYLG 1183
K +T+ADC PL+ +I SRI W R LSY G
Sbjct: 1005 SETCASILARFPFDSGSLPVRYLGLPLMTKRMTLADCLPLLEKIRSRISSWKNRFLSYAG 1064
Query: 1182 RVXXXXXXXXXIKRFWSQIFPLPFIILHKI*TLCR*LLW 1066
R+ + +FW F LP + +I + LW
Sbjct: 1065 RLQLLNSVISSLTKFWISAFRLPRACIREIEQISAAFLW 1103
Score = 33.9 bits (76), Expect(4) = 3e-33
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = -2
Query: 2244 LTSMEVKEAFFDIDASKAPNLDGCTTFLFKKCWSQV 2137
+T EV + FF I +K+P DG T F++ WS +
Sbjct: 719 ITEAEVMKVFFSIPLNKSPGPDGYTVEFFRETWSVI 754
Score = 46.6 bits (109), Expect(2) = 2e-08
Identities = 44/151 (29%), Positives = 63/151 (41%), Gaps = 9/151 (5%)
Frame = -3
Query: 3227 FFVTFNYAANDVDGQRA*WTINIDLAQSIS---EPRLIFGDFNVVLNSVEKVVKS-GAMC 3060
F +F YA+N V+ ++ W +L S++ +P L+FGDFN L E + M
Sbjct: 404 FICSFIYASNFVEERKKLWQDLHNLQNSVAFRNKPWLLFGDFNETLKMEEHSSYAVSPMV 463
Query: 3059 NVGSK-LHHVFETCQPQELRFLGNKLT*SNSHT---YCK-LDRALFNDSWFLTFHHFLAE 2895
G + V C +++R G T N CK LDR L N + + H
Sbjct: 464 TPGMRDFQIVVRYCSLEDMRTHGPLFTWGNKRNEGLICKKLDRVLLNPEYNSAYPHSYCI 523
Query: 2894 FGVPGVSNHSPIMVRLLEKLFLQKVPFKFKN 2802
G S+H L + K PFKF N
Sbjct: 524 MDSGGCSDHLRGRFHLRSAIQKPKGPFKFTN 554
Score = 42.4 bits (98), Expect(2) = 2e-08
Identities = 25/74 (33%), Positives = 39/74 (52%)
Frame = -2
Query: 3435 VLETRIRVNNWESLVKKFKKDWLLDANGGMDRSFRIIVLWKSIEVQVSILMKTNRLIYCE 3256
VLETR+ + + K KDW + +N +R RI V+W S VQ+ ++ K++++I C
Sbjct: 336 VLETRVIESKVPVIFAKVFKDWQMVSNYEFNRLGRIWVVWSS-SVQLQVIFKSSQMIVCL 394
Query: 3255 VFTAD*LYHFFCDF 3214
V F C F
Sbjct: 395 VRVEHYDVEFICSF 408
>gb|AAC19278.1| T14P8.10 [Arabidopsis thaliana] gi|7269009|emb|CAB80742.1| AT4g02490
[Arabidopsis thaliana]
Length = 657
Score = 81.3 bits (199), Expect(4) = 1e-32
Identities = 34/84 (40%), Positives = 55/84 (65%)
Frame = -3
Query: 1820 KIDIHKGYDSDEWNFVERVMLAFGFPN*FVRWVTLCVCSDKYSININGSLEGYFPGRKGL 1641
++D+ K YD+ W F+ ++ A P F+ W+ +C+ + YSI NG L G+F G+KG+
Sbjct: 138 QVDLTKAYDNVNWEFLINILKALNLPPIFINWIWVCISTPSYSIAYNGELIGFFVGKKGI 197
Query: 1640 CQGNPISPYLFVLTMEYLSRNCAL 1569
QG+P+S +LFVL M+ L+R+ L
Sbjct: 198 RQGDPMSSHLFVLVMDILARSLDL 221
Score = 58.2 bits (139), Expect(4) = 1e-32
Identities = 44/161 (27%), Positives = 66/161 (40%), Gaps = 1/161 (0%)
Frame = -2
Query: 1545 VHLKCRCTQTTYVSFADDLMLFGYGDLPSICCVKKFWLIFLLCLA*S-SMR*IVLCF*VG 1369
+H KC T++SFADD+++F G L S+ + +F +++ L G
Sbjct: 230 LHPKCLAPMITHLSFADDILVFCDGSLSSLVAILDILDVFKKGSGLGINLQKTALLLDGG 289
Query: 1368 FIQVLWMLXXXXXXXXRXXXXXXXXXXXXXLKMLTVADCDPLISQILSRIQHWIARHLSY 1189
+ ++ KM D PL+ +I SR W ARHLS+
Sbjct: 290 NFERNRIMAASLGVSQGSLPVRYLGVPLMSQKM-KKHDYQPLVDRINSRFTSWTARHLSF 348
Query: 1188 LGRVXXXXXXXXXIKRFWSQIFPLPFIILHKI*TLCR*LLW 1066
GR+ FW+ IF LP LHK+ +C LW
Sbjct: 349 AGRLQLLKSVIYSTINFWASIFILPNQCLHKLEQMCNAFLW 389
Score = 48.9 bits (115), Expect(4) = 1e-32
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 1/93 (1%)
Frame = -1
Query: 2125 IEAILEVFRIGKLVN*INAIIVSLIPKVENPDRIKDYRPISCCNVVQK-FQRFCTGNVTY 1949
I AI E F G L+ NA ++LIPKV D++ +RP++CC + K R + +
Sbjct: 34 IAAIKEFFLTGHLLKGFNATAITLIPKVPGADQLNLFRPVACCTTIYKVITRLISKRLNL 93
Query: 1948 SKPSVVGVTEGVLV*NRSMVHNILLCLELLKGY 1850
V + + R + N+LL EL+ +
Sbjct: 94 FIDQAVQSNQVGFIKGRLLCENVLLASELVDNF 126
Score = 22.7 bits (47), Expect(4) = 1e-32
Identities = 10/29 (34%), Positives = 14/29 (48%)
Frame = -2
Query: 2220 AFFDIDASKAPNLDGCTTFLFKKCWSQVR 2134
A F + +KAP DG F + W V+
Sbjct: 2 ALFSMPRNKAPGPDGFPVEFFLEAWPIVK 30
>gb|AAC78274.1| putative reverse transcriptase [Arabidopsis thaliana]
Length = 543
Score = 81.3 bits (199), Expect(4) = 1e-32
Identities = 34/84 (40%), Positives = 55/84 (65%)
Frame = -3
Query: 1820 KIDIHKGYDSDEWNFVERVMLAFGFPN*FVRWVTLCVCSDKYSININGSLEGYFPGRKGL 1641
++D+ K YD+ W F+ ++ A P F+ W+ +C+ + YSI NG L G+F G+KG+
Sbjct: 138 QVDLTKAYDNVNWEFLINILKALNLPPIFINWIWVCISTPSYSIAYNGELIGFFVGKKGI 197
Query: 1640 CQGNPISPYLFVLTMEYLSRNCAL 1569
QG+P+S +LFVL M+ L+R+ L
Sbjct: 198 RQGDPMSSHLFVLVMDILARSLDL 221
Score = 58.2 bits (139), Expect(4) = 1e-32
Identities = 44/161 (27%), Positives = 66/161 (40%), Gaps = 1/161 (0%)
Frame = -2
Query: 1545 VHLKCRCTQTTYVSFADDLMLFGYGDLPSICCVKKFWLIFLLCLA*S-SMR*IVLCF*VG 1369
+H KC T++SFADD+++F G L S+ + +F +++ L G
Sbjct: 230 LHPKCLAPMITHLSFADDILVFCDGSLSSLVAILDILDVFKKGSGLGINLQKTALLLDGG 289
Query: 1368 FIQVLWMLXXXXXXXXRXXXXXXXXXXXXXLKMLTVADCDPLISQILSRIQHWIARHLSY 1189
+ ++ KM D PL+ +I SR W ARHLS+
Sbjct: 290 NFERNRIMAASLGVSQGSLPVRYLGVPLMSQKM-KKHDYQPLVDRINSRFTSWTARHLSF 348
Query: 1188 LGRVXXXXXXXXXIKRFWSQIFPLPFIILHKI*TLCR*LLW 1066
GR+ FW+ IF LP LHK+ +C LW
Sbjct: 349 AGRLQLLKSVIYSTINFWASIFILPNQCLHKLEQMCNAFLW 389
Score = 48.9 bits (115), Expect(4) = 1e-32
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 1/93 (1%)
Frame = -1
Query: 2125 IEAILEVFRIGKLVN*INAIIVSLIPKVENPDRIKDYRPISCCNVVQK-FQRFCTGNVTY 1949
I AI E F G L+ NA ++LIPKV D++ +RP++CC + K R + +
Sbjct: 34 IAAIKEFFLTGHLLKGFNATAITLIPKVPGADQLNLFRPVACCTTIYKVITRLISKRLNL 93
Query: 1948 SKPSVVGVTEGVLV*NRSMVHNILLCLELLKGY 1850
V + + R + N+LL EL+ +
Sbjct: 94 FIDQAVQSNQVGFIKGRLLCENVLLASELVDNF 126
Score = 22.7 bits (47), Expect(4) = 1e-32
Identities = 10/29 (34%), Positives = 14/29 (48%)
Frame = -2
Query: 2220 AFFDIDASKAPNLDGCTTFLFKKCWSQVR 2134
A F + +KAP DG F + W V+
Sbjct: 2 ALFSMPRNKAPGPDGFPVEFFLEAWPIVK 30
>gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transcriptase [Brassica napus]
Length = 1214
Score = 89.7 bits (221), Expect(3) = 2e-32
Identities = 43/89 (48%), Positives = 56/89 (62%)
Frame = -3
Query: 1847 ANSSPCCTFKIDIHKGYDSDEWNFVERVMLAFGFPN*FVRWVTLCVCSDKYSININGSLE 1668
AN S K+D+ K +DS W F+ + A P FV W+ C+ S +SIN++GSL
Sbjct: 581 ANISSRGVLKVDLRKAFDSVGWGFIIETLKAANAPPRFVNWIKQCITSTSFSINVSGSLC 640
Query: 1667 GYFPGRKGLCQGNPISPYLFVLTMEYLSR 1581
GYF G KGL QG+P+SP LFV+ ME LSR
Sbjct: 641 GYFKGSKGLRQGDPLSPSLFVIAMEILSR 669
Score = 66.2 bits (160), Expect(3) = 2e-32
Identities = 33/97 (34%), Positives = 54/97 (55%), Gaps = 1/97 (1%)
Frame = -1
Query: 2125 IEAILEVFRIGKLVN*INAIIVSLIPKVENPDRIKDYRPISCCNVVQK-FQRFCTGNVTY 1949
I A+ E FR G+L+ N+ V+++PK N DRI ++RPISCCN + K + +
Sbjct: 486 IAAVQEFFRSGRLLGQWNSTAVTMVPKKPNADRITEFRPISCCNAIYKVISKLLARRLEN 545
Query: 1948 SKPSVVGVTEGVLV*NRSMVHNILLCLELLKGYSQTH 1838
P + ++ V R + N+LL EL++G+ Q +
Sbjct: 546 ILPLWISPSQSAFVKGRLLTENVLLATELVQGFGQAN 582
Score = 34.7 bits (78), Expect(3) = 2e-32
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Frame = -2
Query: 2364 TIC*HFTRECW---AHLLLPSSLTQQD*YG--SCSYYSTRGSSCSLTSMEVKEAFFDIDA 2200
T C F +E + +HL+ ++Q + C + + ++ ++K FF + +
Sbjct: 401 THCVDFFKELFGSSSHLISAEGISQINSLTRFKCDENTRQLLEAEVSEADIKSEFFALPS 460
Query: 2199 SKAPNLDGCTTFLFKKCWSQV 2137
+K+P DG T+ FKK WS V
Sbjct: 461 NKSPGPDGYTSEFFKKTWSIV 481
Score = 55.5 bits (132), Expect(2) = 5e-10
Identities = 47/150 (31%), Positives = 64/150 (42%), Gaps = 7/150 (4%)
Frame = -3
Query: 3227 FFVTFNYAANDVDGQRA*WTINIDLA--QSISE-PRLIFGDFNVVLNSVEKVVKSGAMCN 3057
F VTF YA N G+R W+ LA Q+ S+ P +I GDFN L+ V+ +
Sbjct: 103 FVVTFVYAVNCRYGRRRLWSELELLAANQTTSDKPWIILGDFNQSLDPVDASTGGSRITR 162
Query: 3056 VGSKLHHVFETCQPQELRFLGNKLT*----SNSHTYCKLDRALFNDSWFLTFHHFLAEFG 2889
+ T +L F GN T N+ K+DR L NDSW + F
Sbjct: 163 GMEEFRECLLTSNISDLPFRGNHYTWWNNQENNPIAKKIDRILVNDSWLIASPLSYGSFC 222
Query: 2888 VPGVSNHSPIMVRLLEKLFLQKVPFKFKNF 2799
S+H P V + + + PFK NF
Sbjct: 223 AMEFSDHCPSCVNISNQSGGRNKPFKLSNF 252
Score = 38.9 bits (89), Expect(2) = 5e-10
Identities = 25/94 (26%), Positives = 46/94 (48%)
Frame = -2
Query: 3534 INIGAWNIRALNDPLKQRVVHKCSFVNKLSLFFVLETRIRVNNWESLVKKFKKDWLLDAN 3355
I+ +WN+R N+ +++R K ++K +LETR++ + + W N
Sbjct: 2 IDTFSWNVRGFNNSVRRRNFRKWFKLSKALFGSILETRVKEHRARRSLLSSFPGWKSVCN 61
Query: 3354 GGMDRSFRIIVLWKSIEVQVSILMKTNRLIYCEV 3253
RI V+W V+V++L K+++ I C V
Sbjct: 62 YEFAALGRIWVVWDP-AVEVTVLSKSDQTISCTV 94
Score = 42.7 bits (99), Expect(2) = 4e-06
Identities = 25/78 (32%), Positives = 34/78 (43%)
Frame = -2
Query: 1275 KMLTVADCDPLISQILSRIQHWIARHLSYLGRVXXXXXXXXXIKRFWSQIFPLPFIILHK 1096
+ L +D LI +I +R HW + LS+ GR+ FW F LP L
Sbjct: 771 RKLRRSDYSQLIDKIAARFNHWATKTLSFAGRLQLISSVIYSTVNFWLSSFILPKCCLKT 830
Query: 1095 I*TLCR*LLWVAGNVVRR 1042
I +C LW GN + R
Sbjct: 831 IEQMCNRFLW--GNDITR 846
Score = 38.1 bits (87), Expect(2) = 4e-06
Identities = 21/76 (27%), Positives = 30/76 (39%)
Frame = -1
Query: 1036 VS*DNVC*LVENQGLGFKEVLS*NKATLCKFVFSCASGVAMDPIWCQWIREYRLKHVGIW 857
VS N C GLG + + NK + ++ + D +W W RL+HV W
Sbjct: 852 VSWQNSCLPKAEGGLGLRNFWTWNKTLNLRLIWMLFA--RRDSLWVAWNHANRLRHVNFW 909
Query: 856 EIPVRLSDSWWWSQLL 809
SW W +L
Sbjct: 910 NAEAASHHSWIWKAIL 925
>gb|AAC33226.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1529
Score = 84.7 bits (208), Expect(4) = 1e-30
Identities = 37/85 (43%), Positives = 52/85 (61%)
Frame = -3
Query: 1838 SPCCTFKIDIHKGYDSDEWNFVERVMLAFGFPN*FVRWVTLCVCSDKYSININGSLEGYF 1659
+P C KIDI K +DS +W F+ + A FP F W+ LC+ + +S+ +NG L G+F
Sbjct: 888 TPRCAMKIDISKAFDSVQWQFLLNTLEALNFPETFRHWIKLCISTATFSVQVNGELAGFF 947
Query: 1658 PGRKGLCQGNPISPYLFVLTMEYLS 1584
+GL QG +SPYLFV+ M LS
Sbjct: 948 GSSRGLRQGCALSPYLFVICMNVLS 972
Score = 62.4 bits (150), Expect(4) = 1e-30
Identities = 36/93 (38%), Positives = 50/93 (53%), Gaps = 1/93 (1%)
Frame = -1
Query: 2125 IEAILEVFRIGKLVN*INAIIVSLIPKVENPDRIKDYRPISCCNVVQK-FQRFCTGNVTY 1949
I AI F G L +NA I++LIPK + +KDYRPISCCNV+ K + +
Sbjct: 790 IAAIQSFFVKGFLPKGLNATILALIPKKDEAIEMKDYRPISCCNVLYKVISKILANRLKL 849
Query: 1948 SKPSVVGVTEGVLV*NRSMVHNILLCLELLKGY 1850
PS + + V R ++ N+LL EL+K Y
Sbjct: 850 LLPSFILQNQSAFVKERLLMENVLLATELVKDY 882
Score = 29.6 bits (65), Expect(4) = 1e-30
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = -2
Query: 2280 CSYYSTRGSSCSLTSMEVKEAFFDIDASKAPNLDGCTTFLFKKCWS 2143
CS + +T E+++ F + +K+P DG T+ FK WS
Sbjct: 738 CSVTDQNILTREVTGEEIQKVLFAMPNNKSPGPDGYTSEFFKATWS 783
Score = 26.9 bits (58), Expect(4) = 1e-30
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = -2
Query: 1542 HLKCRCTQTTYVSFADDLMLFGYGDLPSI 1456
H KC T++ FADDLM+F G SI
Sbjct: 987 HPKCEKIGLTHLCFADDLMVFVDGHQWSI 1015
Score = 50.4 bits (119), Expect(2) = 2e-08
Identities = 26/70 (37%), Positives = 34/70 (48%)
Frame = -2
Query: 1275 KMLTVADCDPLISQILSRIQHWIARHLSYLGRVXXXXXXXXXIKRFWSQIFPLPFIILHK 1096
K +T AD PLI + ++I W AR LSY GR+ I FW + LP + +
Sbjct: 1076 KQMTTADYSPLIEAVKTKISSWTARSLSYAGRLALLNSVIVSIANFWMSAYRLPAGCIRE 1135
Query: 1095 I*TLCR*LLW 1066
I LC LW
Sbjct: 1136 IEKLCSAFLW 1145
Score = 38.5 bits (88), Expect(2) = 2e-08
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Frame = -1
Query: 1048 KKSLVS*DNVC*LVENQGLGFKEVLS*NKATLCKFVFSCASGVAMDPIWCQWIREYRLKH 869
KK+ ++ ++C + GLG K + NK + K ++ S +W WI + ++
Sbjct: 1153 KKAKIAWSSICQPKKEGGLGIKSLAEANKVSCLKLIWRLLS--TQPSLWVTWIWTFIIRK 1210
Query: 868 VGIWEIPVRLS-DSWWWSQLL 809
W R S SW W +LL
Sbjct: 1211 GTFWSANERSSLGSWMWKKLL 1231
>dbj|BAB01845.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
thaliana]
Length = 893
Score = 82.0 bits (201), Expect(5) = 3e-29
Identities = 35/79 (44%), Positives = 49/79 (62%)
Frame = -3
Query: 1820 KIDIHKGYDSDEWNFVERVMLAFGFPN*FVRWVTLCVCSDKYSININGSLEGYFPGRKGL 1641
K+D+ K +DS W+F+ A P FV W+ C+ + +S+ +NGS G+F KGL
Sbjct: 592 KVDLRKAFDSVRWDFIISAFRALAVPEKFVCWINQCISTPYFSVMVNGSSSGFFKSNKGL 651
Query: 1640 CQGNPISPYLFVLTMEYLS 1584
QG+P+SPYLFVL ME S
Sbjct: 652 RQGDPLSPYLFVLAMEVFS 670
Score = 59.3 bits (142), Expect(5) = 3e-29
Identities = 31/93 (33%), Positives = 51/93 (54%), Gaps = 1/93 (1%)
Frame = -1
Query: 2122 EAILEVFRIGKLVN*INAIIVSLIPKVENPDRIKDYRPISCCNVVQK-FQRFCTGNVTYS 1946
EA+ E FR G+L+ NA + LIPK+ N ++ D+RPISC N + K + T +
Sbjct: 489 EAVQEFFRSGQLLKQWNATTLVLIPKITNSSKMTDFRPISCLNTLYKVIAKLLTSRLKKL 548
Query: 1945 KPSVVGVTEGVLV*NRSMVHNILLCLELLKGYS 1847
V+ ++ + R + N+LL E++ GY+
Sbjct: 549 LNEVISPSQSAFLPGRLLSENVLLATEIVHGYN 581
Score = 31.6 bits (70), Expect(5) = 3e-29
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = -2
Query: 2280 CSYYSTRGSSCSLTSMEVKEAFFDIDASKAPNLDGCTTFLFKKCW 2146
CS S + ++++EAFF + +KA DG ++ FK W
Sbjct: 436 CSVDQINDLERSFSDLDIQEAFFSLPRNKASGPDGYSSEFFKGVW 480
Score = 24.6 bits (52), Expect(5) = 3e-29
Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 3/62 (4%)
Frame = -1
Query: 2509 SHSKWLTEEHENLTFFHALLMH*RQISSSIFLLRD---ENRDNINVSPSIVNHMLAFYQG 2339
S WL E N +FH + + I++ FL+ D + I H F++
Sbjct: 353 SSISWLYEGDNNTAYFHKMADMRKSINTINFLIDDFGERIETQQGIKEGIKEHSCNFFES 412
Query: 2338 ML 2333
+L
Sbjct: 413 LL 414
Score = 21.2 bits (43), Expect(5) = 3e-29
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -2
Query: 1542 HLKCRCTQTTYVSFADDLMLFGYGDLPSI 1456
H K +++ FADD+M+F G S+
Sbjct: 685 HPKTADLSISHLMFADDVMVFFDGGSSSL 713
Score = 60.5 bits (145), Expect(2) = 4e-10
Identities = 48/158 (30%), Positives = 72/158 (45%), Gaps = 11/158 (6%)
Frame = -3
Query: 3227 FFVTFNYAANDVDGQRA*WTINIDLAQS---ISEPRLIFGDFNVVLNSVEKVVKSGAMCN 3057
F V+ YA+N+ ++ W + LA S + ++ GDFN +LN +S N
Sbjct: 104 FVVSIVYASNEEGTRKELWNELVQLALSPVVVGRSWIVLGDFNQILNP-----ESAINAN 158
Query: 3056 VGSKLHHVFETC----QPQELRFLGNKLT*SNSHTYC----KLDRALFNDSWFLTFHHFL 2901
+G K+ F +C +L + G+ T N + K+DR L ND W F
Sbjct: 159 IGRKIR-AFRSCLLDSDLYDLVYKGSSYTWWNKCSSRPLAKKIDRILVNDHWNTLFPSAY 217
Query: 2900 AEFGVPGVSNHSPIMVRLLEKLFLQKVPFKFKNFWRSN 2787
A FG P S+HS V L + K PF+F N++ N
Sbjct: 218 ANFGEPDFSDHSSCEVVLDPAVLKAKRPFRFFNYFLHN 255
Score = 34.3 bits (77), Expect(2) = 4e-10
Identities = 22/93 (23%), Positives = 40/93 (43%)
Frame = -2
Query: 3519 WNIRALNDPLKQRVVHKCSFVNKLSLFFVLETRIRVNNWESLVKKFKKDWLLDANGGMDR 3340
WN+R N +R K +NK ++ET ++ + + W N
Sbjct: 8 WNVRGFNISSHRRGFKKWFLLNKPLFGGLIETHVKQPKEKKFISNLLPGWSFVENYEFSV 67
Query: 3339 SFRIIVLWKSIEVQVSILMKTNRLIYCEVFTAD 3241
+I VLW V+V ++ ++ ++I CE+ D
Sbjct: 68 LGKIWVLWDP-SVKVVVIGRSLQMITCELLLPD 99