BLASTX nr result
ID: Catharanthus22_contig00005920
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus22_contig00005920
(749 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004297853.1| PREDICTED: enzymatic polyprotein-like [Fraga... 92 4e-36
gb|AGT42070.1| reverse transcriptase [Cauliflower mosaic virus] ... 83 3e-33
gb|AGT42056.1| reverse transcriptase [Cauliflower mosaic virus] ... 83 3e-33
gb|AGT42105.1| reverse transcriptase [Cauliflower mosaic virus] 83 6e-33
gb|ABY66595.1| reverse transcriptase [Cauliflower mosaic virus] 82 6e-33
emb|CAA55974.1| unnamed protein product [Cauliflower mosaic virus] 82 7e-33
gb|AAA21736.1| reverse transcriptase [Cauliflower mosaic virus] 82 7e-33
sp|Q02964.1|POL_CAMVE RecName: Full=Enzymatic polyprotein; Inclu... 82 7e-33
sp|P03555.1|POL_CAMVC RecName: Full=Enzymatic polyprotein; Inclu... 82 7e-33
gb|AFI61742.1| reverse transcriptase [Cauliflower mosaic virus] 82 7e-33
gb|AGT42140.1| reverse transcriptase [Cauliflower mosaic virus] 82 7e-33
ref|NP_056728.1| reverse transcriptase [Cauliflower mosaic virus... 82 1e-32
gb|AGT42189.1| reverse transcriptase [Cauliflower mosaic virus] 82 1e-32
gb|AGT42182.1| reverse transcriptase [Cauliflower mosaic virus] 82 1e-32
gb|AGT42147.1| reverse transcriptase [Cauliflower mosaic virus] ... 82 1e-32
gb|AGT42112.1| reverse transcriptase [Cauliflower mosaic virus] 82 1e-32
gb|AGT42098.1| reverse transcriptase [Cauliflower mosaic virus] ... 82 1e-32
gb|AGT42091.1| reverse transcriptase [Cauliflower mosaic virus] 82 1e-32
gb|AGT42077.1| reverse transcriptase [Cauliflower mosaic virus] 82 1e-32
gb|AGT42063.1| reverse transcriptase [Cauliflower mosaic virus] ... 82 1e-32
>ref|XP_004297853.1| PREDICTED: enzymatic polyprotein-like [Fragaria vesca subsp. vesca]
Length = 268
Score = 91.7 bits (226), Expect(2) = 4e-36
Identities = 51/113 (45%), Positives = 68/113 (60%), Gaps = 1/113 (0%)
Frame = -1
Query: 689 LNEFLDLKLIQDSKFSHSLPAFMVRNHEEQIRRKPRLMVVNNKQLNDATIFDGYFLS-CE 513
+ E L+ KLI+ S H PAF+VRNH EQ+R K R MV++ + +N T+ DGY ++
Sbjct: 52 IQELLEKKLIRPSNSPHHAPAFLVRNHAEQLRGKAR-MVIDYRDVNKKTVKDGYQIAQVR 110
Query: 512 NMINQIYXXXXXXXXXXXXXFWQIKMYIDSIPLTTFSTPQG*YEWLVMSFGLK 354
+IN++ FWQ+KM+ DSI L F TPQG YEWLVM GLK
Sbjct: 111 VLINRLKGAKIFSKFDAKSGFWQVKMHPDSIALRAFGTPQGHYEWLVMPCGLK 163
Score = 87.0 bits (214), Expect(2) = 4e-36
Identities = 47/103 (45%), Positives = 63/103 (61%), Gaps = 1/103 (0%)
Frame = -3
Query: 357 KTPQIFQIKMDNIFKSYS-FFYVYVDDILVASNSRTEHLSHLDKFAELCLQHGL*LSHTK 181
+ P IFQ KMDNIF+ YS F VY+DDILV S + EHL H ++ +L +Q G+ L K
Sbjct: 164 QAPSIFQRKMDNIFRPYSDFCIVYIDDILVFSKTMNEHLKHFEQVCKLIVQKGIILGQKK 223
Query: 180 AKIGTSEIEFLEFKISSQGL*LQPHIVEKINQFSDKLLD*KQL 52
+ EI+FL + + LQ HIV+KI+QF D + D K L
Sbjct: 224 IHLIKGEIDFLGIHVKDGEIRLQDHIVKKISQFPDNIPDAKSL 266
>gb|AGT42070.1| reverse transcriptase [Cauliflower mosaic virus]
gi|530722547|gb|AGT42196.1| reverse transcriptase
[Cauliflower mosaic virus]
Length = 675
Score = 83.2 bits (204), Expect(4) = 3e-33
Identities = 50/113 (44%), Positives = 65/113 (57%), Gaps = 1/113 (0%)
Frame = -1
Query: 689 LNEFLDLKLIQDSKFSHSLPAFMVRNHEEQIRRKPRLMVVNNKQLNDATIFDGYFL-SCE 513
+ E LDLK+I+ SK H PAF+V N E+ R K R MVVN K +N AT+ D Y L + +
Sbjct: 262 IKELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGKKR-MVVNYKAMNKATVGDAYNLPNKD 320
Query: 512 NMINQIYXXXXXXXXXXXXXFWQIKMYIDSIPLTTFSTPQG*YEWLVMSFGLK 354
++ I FWQ+ + DS PLT F+ PQG YEW V+ FGLK
Sbjct: 321 ELLTLIRGKKIFSSFDCKSGFWQVLLDQDSRPLTAFTCPQGHYEWNVVPFGLK 373
Score = 78.2 bits (191), Expect(4) = 3e-33
Identities = 46/103 (44%), Positives = 60/103 (58%), Gaps = 1/103 (0%)
Frame = -3
Query: 357 KTPQIFQIKMDNIFKSY-SFFYVYVDDILVASNSRTEHLSHLDKFAELCLQHGL*LSHTK 181
+ P IFQ MD F+ + F VYVDDILV SN+ +HL H+ + C QHG+ LS K
Sbjct: 374 QAPSIFQRHMDEAFRVFRKFCCVYVDDILVFSNNEEDHLLHVAMILQKCNQHGIILSKKK 433
Query: 180 AKIGTSEIEFLEFKISSQGL*LQPHIVEKINQFSDKLLD*KQL 52
A++ +I FL +I Q HI+E IN+F D L D KQL
Sbjct: 434 AQLFKKKINFLGLEIDEGTHKPQGHILEHINKFPDTLEDKKQL 476
Score = 25.4 bits (54), Expect(4) = 3e-33
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -3
Query: 744 IELKDKDKIIRVIPMRYNP 688
I+L D K I+V PM+Y+P
Sbjct: 234 IKLSDPSKAIKVKPMKYSP 252
Score = 22.3 bits (46), Expect(4) = 3e-33
Identities = 8/11 (72%), Positives = 11/11 (100%)
Frame = -2
Query: 34 YASDFIPQLAE 2
YASD+IP+LA+
Sbjct: 485 YASDYIPKLAQ 495
>gb|AGT42056.1| reverse transcriptase [Cauliflower mosaic virus]
gi|530722419|gb|AGT42084.1| reverse transcriptase
[Cauliflower mosaic virus]
Length = 675
Score = 83.2 bits (204), Expect(4) = 3e-33
Identities = 50/113 (44%), Positives = 65/113 (57%), Gaps = 1/113 (0%)
Frame = -1
Query: 689 LNEFLDLKLIQDSKFSHSLPAFMVRNHEEQIRRKPRLMVVNNKQLNDATIFDGYFL-SCE 513
+ E LDLK+I+ SK H PAF+V N E+ R K R MVVN K +N AT+ D Y L + +
Sbjct: 262 IKELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGKKR-MVVNYKAMNKATVGDAYNLPNKD 320
Query: 512 NMINQIYXXXXXXXXXXXXXFWQIKMYIDSIPLTTFSTPQG*YEWLVMSFGLK 354
++ I FWQ+ + DS PLT F+ PQG YEW V+ FGLK
Sbjct: 321 ELLTLIRGKKIFSSFDCKSGFWQVLLDQDSRPLTAFTCPQGHYEWNVVPFGLK 373
Score = 78.2 bits (191), Expect(4) = 3e-33
Identities = 46/103 (44%), Positives = 60/103 (58%), Gaps = 1/103 (0%)
Frame = -3
Query: 357 KTPQIFQIKMDNIFKSY-SFFYVYVDDILVASNSRTEHLSHLDKFAELCLQHGL*LSHTK 181
+ P IFQ MD F+ + F VYVDDILV SN+ +HL H+ + C QHG+ LS K
Sbjct: 374 QAPSIFQRHMDEAFRVFRKFCCVYVDDILVFSNNEEDHLLHVAMILQKCNQHGIILSKKK 433
Query: 180 AKIGTSEIEFLEFKISSQGL*LQPHIVEKINQFSDKLLD*KQL 52
A++ +I FL +I Q HI+E IN+F D L D KQL
Sbjct: 434 AQLFKKKINFLGLEIDEGTHKPQGHILEHINKFPDTLEDKKQL 476
Score = 25.4 bits (54), Expect(4) = 3e-33
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -3
Query: 744 IELKDKDKIIRVIPMRYNP 688
I+L D K I+V PM+Y+P
Sbjct: 234 IKLSDPSKAIKVKPMKYSP 252
Score = 22.3 bits (46), Expect(4) = 3e-33
Identities = 8/11 (72%), Positives = 11/11 (100%)
Frame = -2
Query: 34 YASDFIPQLAE 2
YASD+IP+LA+
Sbjct: 485 YASDYIPKLAQ 495
>gb|AGT42105.1| reverse transcriptase [Cauliflower mosaic virus]
Length = 675
Score = 83.2 bits (204), Expect(4) = 6e-33
Identities = 50/113 (44%), Positives = 65/113 (57%), Gaps = 1/113 (0%)
Frame = -1
Query: 689 LNEFLDLKLIQDSKFSHSLPAFMVRNHEEQIRRKPRLMVVNNKQLNDATIFDGYFL-SCE 513
+ E LDLK+I+ SK H PAF+V N E+ R K R MVVN K +N AT+ D Y L + +
Sbjct: 262 IKELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGKKR-MVVNYKAMNKATVGDAYNLPNKD 320
Query: 512 NMINQIYXXXXXXXXXXXXXFWQIKMYIDSIPLTTFSTPQG*YEWLVMSFGLK 354
++ I FWQ+ + DS PLT F+ PQG YEW V+ FGLK
Sbjct: 321 ELLTLIRGKKIFSSFDCKSGFWQVLLDQDSRPLTAFTCPQGHYEWNVVPFGLK 373
Score = 77.4 bits (189), Expect(4) = 6e-33
Identities = 46/103 (44%), Positives = 60/103 (58%), Gaps = 1/103 (0%)
Frame = -3
Query: 357 KTPQIFQIKMDNIFKSY-SFFYVYVDDILVASNSRTEHLSHLDKFAELCLQHGL*LSHTK 181
+ P IFQ MD F+ + F VYVDDILV SN+ +HL H+ + C QHG+ LS K
Sbjct: 374 QAPSIFQRHMDEAFRVFRKFCCVYVDDILVFSNNEEDHLLHVAMILQKCNQHGIILSKKK 433
Query: 180 AKIGTSEIEFLEFKISSQGL*LQPHIVEKINQFSDKLLD*KQL 52
A++ +I FL +I Q HI+E IN+F D L D KQL
Sbjct: 434 AQLFKKKINFLGLEIDEGTHKPQGHILEHINKFPDILEDKKQL 476
Score = 25.4 bits (54), Expect(4) = 6e-33
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -3
Query: 744 IELKDKDKIIRVIPMRYNP 688
I+L D K I+V PM+Y+P
Sbjct: 234 IKLSDPSKAIKVKPMKYSP 252
Score = 22.3 bits (46), Expect(4) = 6e-33
Identities = 8/11 (72%), Positives = 11/11 (100%)
Frame = -2
Query: 34 YASDFIPQLAE 2
YASD+IP+LA+
Sbjct: 485 YASDYIPKLAQ 495
>gb|ABY66595.1| reverse transcriptase [Cauliflower mosaic virus]
Length = 674
Score = 81.6 bits (200), Expect(4) = 6e-33
Identities = 49/113 (43%), Positives = 65/113 (57%), Gaps = 1/113 (0%)
Frame = -1
Query: 689 LNEFLDLKLIQDSKFSHSLPAFMVRNHEEQIRRKPRLMVVNNKQLNDATIFDGYFL-SCE 513
+ E LDLK+I+ SK H PAF+V N E+ R K R MVVN K +N AT+ D Y L + +
Sbjct: 261 IKELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGKKR-MVVNYKAMNKATVGDAYNLPNKD 319
Query: 512 NMINQIYXXXXXXXXXXXXXFWQIKMYIDSIPLTTFSTPQG*YEWLVMSFGLK 354
++ I FWQ+ + +S PLT F+ PQG YEW V+ FGLK
Sbjct: 320 ELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQGHYEWNVVPFGLK 372
Score = 79.0 bits (193), Expect(4) = 6e-33
Identities = 46/103 (44%), Positives = 61/103 (59%), Gaps = 1/103 (0%)
Frame = -3
Query: 357 KTPQIFQIKMDNIFKSY-SFFYVYVDDILVASNSRTEHLSHLDKFAELCLQHGL*LSHTK 181
+ P IFQ MD F+ + F VYVDDILV SN++ +HL H+ + C QHG+ LS K
Sbjct: 373 QAPSIFQRHMDEAFRVFRKFCCVYVDDILVFSNNKEDHLLHVAMILQKCNQHGIILSKKK 432
Query: 180 AKIGTSEIEFLEFKISSQGL*LQPHIVEKINQFSDKLLD*KQL 52
A++ +I FL +I Q HI+E IN+F D L D KQL
Sbjct: 433 AQLFKKKINFLGLEIDEGTHKPQGHILEHINKFPDTLEDKKQL 475
Score = 25.4 bits (54), Expect(4) = 6e-33
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -3
Query: 744 IELKDKDKIIRVIPMRYNP 688
I+L D K I+V PM+Y+P
Sbjct: 233 IKLSDPSKAIKVKPMKYSP 251
Score = 22.3 bits (46), Expect(4) = 6e-33
Identities = 8/11 (72%), Positives = 11/11 (100%)
Frame = -2
Query: 34 YASDFIPQLAE 2
YASD+IP+LA+
Sbjct: 484 YASDYIPKLAQ 494
>emb|CAA55974.1| unnamed protein product [Cauliflower mosaic virus]
Length = 680
Score = 82.0 bits (201), Expect(4) = 7e-33
Identities = 50/113 (44%), Positives = 65/113 (57%), Gaps = 1/113 (0%)
Frame = -1
Query: 689 LNEFLDLKLIQDSKFSHSLPAFMVRNHEEQIRRKPRLMVVNNKQLNDATIFDGYFL-SCE 513
+ E LDLK+I+ SK H PAF+V N E+ R K R MVVN K +N ATI D Y L + +
Sbjct: 267 IKELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGKKR-MVVNYKAMNKATIGDAYNLPNKD 325
Query: 512 NMINQIYXXXXXXXXXXXXXFWQIKMYIDSIPLTTFSTPQG*YEWLVMSFGLK 354
++ I FWQ+ + +S PLT F+ PQG YEW V+ FGLK
Sbjct: 326 ELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQGHYEWNVVPFGLK 378
Score = 78.2 bits (191), Expect(4) = 7e-33
Identities = 46/103 (44%), Positives = 60/103 (58%), Gaps = 1/103 (0%)
Frame = -3
Query: 357 KTPQIFQIKMDNIFKSY-SFFYVYVDDILVASNSRTEHLSHLDKFAELCLQHGL*LSHTK 181
+ P IFQ MD F+ + F VYVDDILV SN+ +HL H+ + C QHG+ LS K
Sbjct: 379 QAPSIFQRHMDEAFRVFRKFCCVYVDDILVFSNNEEDHLLHVAMILQKCNQHGIILSKKK 438
Query: 180 AKIGTSEIEFLEFKISSQGL*LQPHIVEKINQFSDKLLD*KQL 52
A++ +I FL +I Q HI+E IN+F D L D KQL
Sbjct: 439 AQLFKKKINFLGLEIDEGTHKPQGHILEHINKFPDTLEDKKQL 481
Score = 25.4 bits (54), Expect(4) = 7e-33
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -3
Query: 744 IELKDKDKIIRVIPMRYNP 688
I+L D K I+V PM+Y+P
Sbjct: 239 IKLSDPSKAIKVKPMKYSP 257
Score = 22.3 bits (46), Expect(4) = 7e-33
Identities = 8/11 (72%), Positives = 11/11 (100%)
Frame = -2
Query: 34 YASDFIPQLAE 2
YASD+IP+LA+
Sbjct: 490 YASDYIPKLAQ 500
>gb|AAA21736.1| reverse transcriptase [Cauliflower mosaic virus]
Length = 680
Score = 81.6 bits (200), Expect(4) = 7e-33
Identities = 49/113 (43%), Positives = 65/113 (57%), Gaps = 1/113 (0%)
Frame = -1
Query: 689 LNEFLDLKLIQDSKFSHSLPAFMVRNHEEQIRRKPRLMVVNNKQLNDATIFDGYFL-SCE 513
+ E LDLK+I+ SK H PAF+V N E+ R K R MVVN K +N AT+ D Y L + +
Sbjct: 267 IKELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGKKR-MVVNYKAMNKATVGDAYNLPNKD 325
Query: 512 NMINQIYXXXXXXXXXXXXXFWQIKMYIDSIPLTTFSTPQG*YEWLVMSFGLK 354
++ I FWQ+ + +S PLT F+ PQG YEW V+ FGLK
Sbjct: 326 ELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQGHYEWNVVPFGLK 378
Score = 78.2 bits (191), Expect(4) = 7e-33
Identities = 46/103 (44%), Positives = 60/103 (58%), Gaps = 1/103 (0%)
Frame = -3
Query: 357 KTPQIFQIKMDNIFKSY-SFFYVYVDDILVASNSRTEHLSHLDKFAELCLQHGL*LSHTK 181
+ P IFQ MD F+ + F VYVDDILV SN+ +HL H+ + C QHG+ LS K
Sbjct: 379 QAPSIFQRHMDEAFRVFRKFCCVYVDDILVFSNNEEDHLLHVAMILQKCNQHGIILSKKK 438
Query: 180 AKIGTSEIEFLEFKISSQGL*LQPHIVEKINQFSDKLLD*KQL 52
A++ +I FL +I Q HI+E IN+F D L D KQL
Sbjct: 439 AQLFKKKINFLGLEIDEGTHKPQGHILEHINKFPDTLEDKKQL 481
Score = 25.8 bits (55), Expect(4) = 7e-33
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = -3
Query: 744 IELKDKDKIIRVIPMRYNP 688
I+L D +K I+V PM+Y+P
Sbjct: 239 IKLSDPNKAIKVKPMKYSP 257
Score = 22.3 bits (46), Expect(4) = 7e-33
Identities = 8/11 (72%), Positives = 11/11 (100%)
Frame = -2
Query: 34 YASDFIPQLAE 2
YASD+IP+LA+
Sbjct: 490 YASDYIPKLAQ 500
>sp|Q02964.1|POL_CAMVE RecName: Full=Enzymatic polyprotein; Includes: RecName:
Full=Aspartic protease; Includes: RecName:
Full=Endonuclease; Includes: RecName: Full=Reverse
transcriptase gi|293185|gb|AAA62375.1| reverse
transcriptase [Cauliflower mosaic virus]
Length = 679
Score = 82.0 bits (201), Expect(4) = 7e-33
Identities = 50/113 (44%), Positives = 65/113 (57%), Gaps = 1/113 (0%)
Frame = -1
Query: 689 LNEFLDLKLIQDSKFSHSLPAFMVRNHEEQIRRKPRLMVVNNKQLNDATIFDGYFL-SCE 513
+ E LDLK+I+ SK H PAF+V N E+ R K R MVVN K +N ATI D Y L + +
Sbjct: 266 IKELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGKKR-MVVNYKAMNKATIGDAYNLPNKD 324
Query: 512 NMINQIYXXXXXXXXXXXXXFWQIKMYIDSIPLTTFSTPQG*YEWLVMSFGLK 354
++ I FWQ+ + +S PLT F+ PQG YEW V+ FGLK
Sbjct: 325 ELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQGHYEWNVVPFGLK 377
Score = 78.2 bits (191), Expect(4) = 7e-33
Identities = 46/103 (44%), Positives = 60/103 (58%), Gaps = 1/103 (0%)
Frame = -3
Query: 357 KTPQIFQIKMDNIFKSY-SFFYVYVDDILVASNSRTEHLSHLDKFAELCLQHGL*LSHTK 181
+ P IFQ MD F+ + F VYVDDILV SN+ +HL H+ + C QHG+ LS K
Sbjct: 378 QAPSIFQRHMDEAFRVFRKFCCVYVDDILVFSNNEEDHLLHVAMILQKCNQHGIILSKKK 437
Query: 180 AKIGTSEIEFLEFKISSQGL*LQPHIVEKINQFSDKLLD*KQL 52
A++ +I FL +I Q HI+E IN+F D L D KQL
Sbjct: 438 AQLFKKKINFLGLEIDEGTHKPQGHILEHINKFPDTLEDKKQL 480
Score = 25.4 bits (54), Expect(4) = 7e-33
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -3
Query: 744 IELKDKDKIIRVIPMRYNP 688
I+L D K I+V PM+Y+P
Sbjct: 238 IKLSDPSKAIKVKPMKYSP 256
Score = 22.3 bits (46), Expect(4) = 7e-33
Identities = 8/11 (72%), Positives = 11/11 (100%)
Frame = -2
Query: 34 YASDFIPQLAE 2
YASD+IP+LA+
Sbjct: 489 YASDYIPKLAQ 499
>sp|P03555.1|POL_CAMVC RecName: Full=Enzymatic polyprotein; Includes: RecName:
Full=Aspartic protease; Includes: RecName:
Full=Endonuclease; Includes: RecName: Full=Reverse
transcriptase
Length = 679
Score = 82.0 bits (201), Expect(4) = 7e-33
Identities = 50/113 (44%), Positives = 65/113 (57%), Gaps = 1/113 (0%)
Frame = -1
Query: 689 LNEFLDLKLIQDSKFSHSLPAFMVRNHEEQIRRKPRLMVVNNKQLNDATIFDGYFL-SCE 513
+ E LDLK+I+ SK H PAF+V N E+ R K R MVVN K +N ATI D Y L + +
Sbjct: 266 IKELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGKKR-MVVNYKAMNKATIGDAYNLPNKD 324
Query: 512 NMINQIYXXXXXXXXXXXXXFWQIKMYIDSIPLTTFSTPQG*YEWLVMSFGLK 354
++ I FWQ+ + +S PLT F+ PQG YEW V+ FGLK
Sbjct: 325 ELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQGHYEWNVVPFGLK 377
Score = 78.2 bits (191), Expect(4) = 7e-33
Identities = 46/103 (44%), Positives = 60/103 (58%), Gaps = 1/103 (0%)
Frame = -3
Query: 357 KTPQIFQIKMDNIFKSY-SFFYVYVDDILVASNSRTEHLSHLDKFAELCLQHGL*LSHTK 181
+ P IFQ MD F+ + F VYVDDILV SN+ +HL H+ + C QHG+ LS K
Sbjct: 378 QAPSIFQRHMDEAFRVFRKFCCVYVDDILVFSNNEEDHLLHVAMILQKCNQHGIILSKKK 437
Query: 180 AKIGTSEIEFLEFKISSQGL*LQPHIVEKINQFSDKLLD*KQL 52
A++ +I FL +I Q HI+E IN+F D L D KQL
Sbjct: 438 AQLFKKKINFLGLEIDEGTHKPQGHILEHINKFPDTLEDKKQL 480
Score = 25.4 bits (54), Expect(4) = 7e-33
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -3
Query: 744 IELKDKDKIIRVIPMRYNP 688
I+L D K I+V PM+Y+P
Sbjct: 238 IKLSDPSKAIKVKPMKYSP 256
Score = 22.3 bits (46), Expect(4) = 7e-33
Identities = 8/11 (72%), Positives = 11/11 (100%)
Frame = -2
Query: 34 YASDFIPQLAE 2
YASD+IP+LA+
Sbjct: 489 YASDYIPKLAQ 499
>gb|AFI61742.1| reverse transcriptase [Cauliflower mosaic virus]
Length = 679
Score = 82.0 bits (201), Expect(4) = 7e-33
Identities = 50/113 (44%), Positives = 65/113 (57%), Gaps = 1/113 (0%)
Frame = -1
Query: 689 LNEFLDLKLIQDSKFSHSLPAFMVRNHEEQIRRKPRLMVVNNKQLNDATIFDGYFL-SCE 513
+ E LDLK+I+ SK H PAF+V N E+ R K R MVVN K +N ATI D Y L + +
Sbjct: 266 IKELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGKKR-MVVNYKAMNKATIGDAYNLPNKD 324
Query: 512 NMINQIYXXXXXXXXXXXXXFWQIKMYIDSIPLTTFSTPQG*YEWLVMSFGLK 354
++ I FWQ+ + +S PLT F+ PQG YEW V+ FGLK
Sbjct: 325 ELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQGHYEWNVVPFGLK 377
Score = 78.2 bits (191), Expect(4) = 7e-33
Identities = 46/103 (44%), Positives = 60/103 (58%), Gaps = 1/103 (0%)
Frame = -3
Query: 357 KTPQIFQIKMDNIFKSY-SFFYVYVDDILVASNSRTEHLSHLDKFAELCLQHGL*LSHTK 181
+ P IFQ MD F+ + F VYVDDILV SN+ +HL H+ + C QHG+ LS K
Sbjct: 378 QAPSIFQRHMDEAFRVFRKFCCVYVDDILVFSNNEEDHLLHVAMILQKCNQHGIILSKKK 437
Query: 180 AKIGTSEIEFLEFKISSQGL*LQPHIVEKINQFSDKLLD*KQL 52
A++ +I FL +I Q HI+E IN+F D L D KQL
Sbjct: 438 AQLFKKKINFLGLEIDEGTHKPQGHILEHINKFPDTLEDKKQL 480
Score = 25.4 bits (54), Expect(4) = 7e-33
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -3
Query: 744 IELKDKDKIIRVIPMRYNP 688
I+L D K I+V PM+Y+P
Sbjct: 238 IKLSDPSKAIKVKPMKYSP 256
Score = 22.3 bits (46), Expect(4) = 7e-33
Identities = 8/11 (72%), Positives = 11/11 (100%)
Frame = -2
Query: 34 YASDFIPQLAE 2
YASD+IP+LA+
Sbjct: 489 YASDYIPKLAQ 499
>gb|AGT42140.1| reverse transcriptase [Cauliflower mosaic virus]
Length = 675
Score = 82.0 bits (201), Expect(4) = 7e-33
Identities = 50/113 (44%), Positives = 65/113 (57%), Gaps = 1/113 (0%)
Frame = -1
Query: 689 LNEFLDLKLIQDSKFSHSLPAFMVRNHEEQIRRKPRLMVVNNKQLNDATIFDGYFL-SCE 513
+ E LDLK+I+ SK H PAF+V N E+ R K R MVVN K +N ATI D Y L + +
Sbjct: 262 IKELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGKKR-MVVNYKAMNKATIGDAYNLPNKD 320
Query: 512 NMINQIYXXXXXXXXXXXXXFWQIKMYIDSIPLTTFSTPQG*YEWLVMSFGLK 354
++ I FWQ+ + +S PLT F+ PQG YEW V+ FGLK
Sbjct: 321 ELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQGHYEWNVVPFGLK 373
Score = 78.2 bits (191), Expect(4) = 7e-33
Identities = 46/103 (44%), Positives = 60/103 (58%), Gaps = 1/103 (0%)
Frame = -3
Query: 357 KTPQIFQIKMDNIFKSY-SFFYVYVDDILVASNSRTEHLSHLDKFAELCLQHGL*LSHTK 181
+ P IFQ MD F+ + F VYVDDILV SN+ +HL H+ + C QHG+ LS K
Sbjct: 374 QAPSIFQRHMDEAFRVFRKFCCVYVDDILVFSNNEEDHLLHVAMILQKCNQHGIILSKKK 433
Query: 180 AKIGTSEIEFLEFKISSQGL*LQPHIVEKINQFSDKLLD*KQL 52
A++ +I FL +I Q HI+E IN+F D L D KQL
Sbjct: 434 AQLFKKKINFLGLEIDEGTHKPQGHILEHINKFPDTLEDKKQL 476
Score = 25.4 bits (54), Expect(4) = 7e-33
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -3
Query: 744 IELKDKDKIIRVIPMRYNP 688
I+L D K I+V PM+Y+P
Sbjct: 234 IKLSDPSKAIKVKPMKYSP 252
Score = 22.3 bits (46), Expect(4) = 7e-33
Identities = 8/11 (72%), Positives = 11/11 (100%)
Frame = -2
Query: 34 YASDFIPQLAE 2
YASD+IP+LA+
Sbjct: 485 YASDYIPKLAQ 495
>ref|NP_056728.1| reverse transcriptase [Cauliflower mosaic virus]
gi|130592|sp|P03554.1|POL_CAMVS RecName: Full=Enzymatic
polyprotein; Includes: RecName: Full=Aspartic protease;
Includes: RecName: Full=Endonuclease; Includes: RecName:
Full=Reverse transcriptase gi|58826|emb|CAA23460.1|
unnamed protein product [Cauliflower mosaic virus]
Length = 679
Score = 81.6 bits (200), Expect(4) = 1e-32
Identities = 49/113 (43%), Positives = 65/113 (57%), Gaps = 1/113 (0%)
Frame = -1
Query: 689 LNEFLDLKLIQDSKFSHSLPAFMVRNHEEQIRRKPRLMVVNNKQLNDATIFDGYFL-SCE 513
+ E LDLK+I+ SK H PAF+V N E+ R K R MVVN K +N AT+ D Y L + +
Sbjct: 266 IKELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGKKR-MVVNYKAMNKATVGDAYNLPNKD 324
Query: 512 NMINQIYXXXXXXXXXXXXXFWQIKMYIDSIPLTTFSTPQG*YEWLVMSFGLK 354
++ I FWQ+ + +S PLT F+ PQG YEW V+ FGLK
Sbjct: 325 ELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQGHYEWNVVPFGLK 377
Score = 78.2 bits (191), Expect(4) = 1e-32
Identities = 46/103 (44%), Positives = 60/103 (58%), Gaps = 1/103 (0%)
Frame = -3
Query: 357 KTPQIFQIKMDNIFKSY-SFFYVYVDDILVASNSRTEHLSHLDKFAELCLQHGL*LSHTK 181
+ P IFQ MD F+ + F VYVDDILV SN+ +HL H+ + C QHG+ LS K
Sbjct: 378 QAPSIFQRHMDEAFRVFRKFCCVYVDDILVFSNNEEDHLLHVAMILQKCNQHGIILSKKK 437
Query: 180 AKIGTSEIEFLEFKISSQGL*LQPHIVEKINQFSDKLLD*KQL 52
A++ +I FL +I Q HI+E IN+F D L D KQL
Sbjct: 438 AQLFKKKINFLGLEIDEGTHKPQGHILEHINKFPDTLEDKKQL 480
Score = 25.4 bits (54), Expect(4) = 1e-32
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -3
Query: 744 IELKDKDKIIRVIPMRYNP 688
I+L D K I+V PM+Y+P
Sbjct: 238 IKLSDPSKAIKVKPMKYSP 256
Score = 22.3 bits (46), Expect(4) = 1e-32
Identities = 8/11 (72%), Positives = 11/11 (100%)
Frame = -2
Query: 34 YASDFIPQLAE 2
YASD+IP+LA+
Sbjct: 489 YASDYIPKLAQ 499
>gb|AGT42189.1| reverse transcriptase [Cauliflower mosaic virus]
Length = 675
Score = 81.6 bits (200), Expect(4) = 1e-32
Identities = 49/113 (43%), Positives = 65/113 (57%), Gaps = 1/113 (0%)
Frame = -1
Query: 689 LNEFLDLKLIQDSKFSHSLPAFMVRNHEEQIRRKPRLMVVNNKQLNDATIFDGYFL-SCE 513
+ E LDLK+I+ SK H PAF+V N E+ R K R MVVN K +N AT+ D Y L + +
Sbjct: 262 IKELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGKKR-MVVNYKAMNKATVGDAYNLPNKD 320
Query: 512 NMINQIYXXXXXXXXXXXXXFWQIKMYIDSIPLTTFSTPQG*YEWLVMSFGLK 354
++ I FWQ+ + +S PLT F+ PQG YEW V+ FGLK
Sbjct: 321 ELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQGHYEWNVVPFGLK 373
Score = 78.2 bits (191), Expect(4) = 1e-32
Identities = 46/103 (44%), Positives = 60/103 (58%), Gaps = 1/103 (0%)
Frame = -3
Query: 357 KTPQIFQIKMDNIFKSY-SFFYVYVDDILVASNSRTEHLSHLDKFAELCLQHGL*LSHTK 181
+ P IFQ MD F+ + F VYVDDILV SN+ +HL H+ + C QHG+ LS K
Sbjct: 374 QAPSIFQRHMDEAFRVFRKFCCVYVDDILVFSNNEEDHLLHVAMILQKCNQHGIILSKKK 433
Query: 180 AKIGTSEIEFLEFKISSQGL*LQPHIVEKINQFSDKLLD*KQL 52
A++ +I FL +I Q HI+E IN+F D L D KQL
Sbjct: 434 AQLFKKKINFLGLEIDEGTHKPQGHILEHINKFPDTLEDKKQL 476
Score = 25.4 bits (54), Expect(4) = 1e-32
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -3
Query: 744 IELKDKDKIIRVIPMRYNP 688
I+L D K I+V PM+Y+P
Sbjct: 234 IKLSDPSKAIKVKPMKYSP 252
Score = 22.3 bits (46), Expect(4) = 1e-32
Identities = 8/11 (72%), Positives = 11/11 (100%)
Frame = -2
Query: 34 YASDFIPQLAE 2
YASD+IP+LA+
Sbjct: 485 YASDYIPKLAQ 495
>gb|AGT42182.1| reverse transcriptase [Cauliflower mosaic virus]
Length = 675
Score = 81.6 bits (200), Expect(4) = 1e-32
Identities = 49/113 (43%), Positives = 65/113 (57%), Gaps = 1/113 (0%)
Frame = -1
Query: 689 LNEFLDLKLIQDSKFSHSLPAFMVRNHEEQIRRKPRLMVVNNKQLNDATIFDGYFL-SCE 513
+ E LDLK+I+ SK H PAF+V N E+ R K R MVVN K +N AT+ D Y L + +
Sbjct: 262 IKELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGKKR-MVVNYKAMNKATVGDAYNLPNKD 320
Query: 512 NMINQIYXXXXXXXXXXXXXFWQIKMYIDSIPLTTFSTPQG*YEWLVMSFGLK 354
++ I FWQ+ + +S PLT F+ PQG YEW V+ FGLK
Sbjct: 321 ELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQGHYEWNVVPFGLK 373
Score = 78.2 bits (191), Expect(4) = 1e-32
Identities = 46/103 (44%), Positives = 60/103 (58%), Gaps = 1/103 (0%)
Frame = -3
Query: 357 KTPQIFQIKMDNIFKSY-SFFYVYVDDILVASNSRTEHLSHLDKFAELCLQHGL*LSHTK 181
+ P IFQ MD F+ + F VYVDDILV SN+ +HL H+ + C QHG+ LS K
Sbjct: 374 QAPSIFQRHMDEAFRVFRKFCCVYVDDILVFSNNEEDHLLHVAMILQKCNQHGIILSKKK 433
Query: 180 AKIGTSEIEFLEFKISSQGL*LQPHIVEKINQFSDKLLD*KQL 52
A++ +I FL +I Q HI+E IN+F D L D KQL
Sbjct: 434 AQLFKKKINFLGLEIDEGTHKPQGHILEHINKFPDTLEDKKQL 476
Score = 25.4 bits (54), Expect(4) = 1e-32
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -3
Query: 744 IELKDKDKIIRVIPMRYNP 688
I+L D K I+V PM+Y+P
Sbjct: 234 IKLSDPSKAIKVKPMKYSP 252
Score = 22.3 bits (46), Expect(4) = 1e-32
Identities = 8/11 (72%), Positives = 11/11 (100%)
Frame = -2
Query: 34 YASDFIPQLAE 2
YASD+IP+LA+
Sbjct: 485 YASDYIPKLAQ 495
>gb|AGT42147.1| reverse transcriptase [Cauliflower mosaic virus]
gi|530722499|gb|AGT42154.1| reverse transcriptase
[Cauliflower mosaic virus]
Length = 675
Score = 81.6 bits (200), Expect(4) = 1e-32
Identities = 49/113 (43%), Positives = 65/113 (57%), Gaps = 1/113 (0%)
Frame = -1
Query: 689 LNEFLDLKLIQDSKFSHSLPAFMVRNHEEQIRRKPRLMVVNNKQLNDATIFDGYFL-SCE 513
+ E LDLK+I+ SK H PAF+V N E+ R K R MVVN K +N AT+ D Y L + +
Sbjct: 262 IKELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGKKR-MVVNYKAMNKATVGDAYNLPNKD 320
Query: 512 NMINQIYXXXXXXXXXXXXXFWQIKMYIDSIPLTTFSTPQG*YEWLVMSFGLK 354
++ I FWQ+ + +S PLT F+ PQG YEW V+ FGLK
Sbjct: 321 ELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQGHYEWNVVPFGLK 373
Score = 78.2 bits (191), Expect(4) = 1e-32
Identities = 46/103 (44%), Positives = 60/103 (58%), Gaps = 1/103 (0%)
Frame = -3
Query: 357 KTPQIFQIKMDNIFKSY-SFFYVYVDDILVASNSRTEHLSHLDKFAELCLQHGL*LSHTK 181
+ P IFQ MD F+ + F VYVDDILV SN+ +HL H+ + C QHG+ LS K
Sbjct: 374 QAPSIFQRHMDEAFRVFRKFCCVYVDDILVFSNNEEDHLLHVAMILQKCNQHGIILSKKK 433
Query: 180 AKIGTSEIEFLEFKISSQGL*LQPHIVEKINQFSDKLLD*KQL 52
A++ +I FL +I Q HI+E IN+F D L D KQL
Sbjct: 434 AQLFKKKINFLGLEIDEGTHKPQGHILEHINKFPDTLEDKKQL 476
Score = 25.4 bits (54), Expect(4) = 1e-32
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -3
Query: 744 IELKDKDKIIRVIPMRYNP 688
I+L D K I+V PM+Y+P
Sbjct: 234 IKLSDPSKAIKVKPMKYSP 252
Score = 22.3 bits (46), Expect(4) = 1e-32
Identities = 8/11 (72%), Positives = 11/11 (100%)
Frame = -2
Query: 34 YASDFIPQLAE 2
YASD+IP+LA+
Sbjct: 485 YASDYIPKLAQ 495
>gb|AGT42112.1| reverse transcriptase [Cauliflower mosaic virus]
Length = 675
Score = 81.6 bits (200), Expect(4) = 1e-32
Identities = 49/113 (43%), Positives = 65/113 (57%), Gaps = 1/113 (0%)
Frame = -1
Query: 689 LNEFLDLKLIQDSKFSHSLPAFMVRNHEEQIRRKPRLMVVNNKQLNDATIFDGYFL-SCE 513
+ E LDLK+I+ SK H PAF+V N E+ R K R MVVN K +N AT+ D Y L + +
Sbjct: 262 IKELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGKKR-MVVNYKAMNKATVGDAYNLPNKD 320
Query: 512 NMINQIYXXXXXXXXXXXXXFWQIKMYIDSIPLTTFSTPQG*YEWLVMSFGLK 354
++ I FWQ+ + +S PLT F+ PQG YEW V+ FGLK
Sbjct: 321 ELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQGHYEWNVVPFGLK 373
Score = 78.2 bits (191), Expect(4) = 1e-32
Identities = 46/103 (44%), Positives = 60/103 (58%), Gaps = 1/103 (0%)
Frame = -3
Query: 357 KTPQIFQIKMDNIFKSY-SFFYVYVDDILVASNSRTEHLSHLDKFAELCLQHGL*LSHTK 181
+ P IFQ MD F+ + F VYVDDILV SN+ +HL H+ + C QHG+ LS K
Sbjct: 374 QAPSIFQRHMDEAFRVFRKFCCVYVDDILVFSNNEEDHLLHVAMILQKCNQHGIILSKKK 433
Query: 180 AKIGTSEIEFLEFKISSQGL*LQPHIVEKINQFSDKLLD*KQL 52
A++ +I FL +I Q HI+E IN+F D L D KQL
Sbjct: 434 AQLFKKKINFLGLEIDEGTHKPQGHILEHINKFPDTLEDKKQL 476
Score = 25.4 bits (54), Expect(4) = 1e-32
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -3
Query: 744 IELKDKDKIIRVIPMRYNP 688
I+L D K I+V PM+Y+P
Sbjct: 234 IKLSDPSKAIKVKPMKYSP 252
Score = 22.3 bits (46), Expect(4) = 1e-32
Identities = 8/11 (72%), Positives = 11/11 (100%)
Frame = -2
Query: 34 YASDFIPQLAE 2
YASD+IP+LA+
Sbjct: 485 YASDYIPKLAQ 495
>gb|AGT42098.1| reverse transcriptase [Cauliflower mosaic virus]
gi|530722467|gb|AGT42126.1| reverse transcriptase
[Cauliflower mosaic virus] gi|530722475|gb|AGT42133.1|
reverse transcriptase [Cauliflower mosaic virus]
Length = 675
Score = 81.6 bits (200), Expect(4) = 1e-32
Identities = 49/113 (43%), Positives = 65/113 (57%), Gaps = 1/113 (0%)
Frame = -1
Query: 689 LNEFLDLKLIQDSKFSHSLPAFMVRNHEEQIRRKPRLMVVNNKQLNDATIFDGYFL-SCE 513
+ E LDLK+I+ SK H PAF+V N E+ R K R MVVN K +N AT+ D Y L + +
Sbjct: 262 IKELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGKKR-MVVNYKAMNKATVGDAYNLPNKD 320
Query: 512 NMINQIYXXXXXXXXXXXXXFWQIKMYIDSIPLTTFSTPQG*YEWLVMSFGLK 354
++ I FWQ+ + +S PLT F+ PQG YEW V+ FGLK
Sbjct: 321 ELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQGHYEWNVVPFGLK 373
Score = 78.2 bits (191), Expect(4) = 1e-32
Identities = 46/103 (44%), Positives = 60/103 (58%), Gaps = 1/103 (0%)
Frame = -3
Query: 357 KTPQIFQIKMDNIFKSY-SFFYVYVDDILVASNSRTEHLSHLDKFAELCLQHGL*LSHTK 181
+ P IFQ MD F+ + F VYVDDILV SN+ +HL H+ + C QHG+ LS K
Sbjct: 374 QAPSIFQRHMDEAFRVFRKFCCVYVDDILVFSNNEEDHLLHVAMILQKCNQHGIILSKKK 433
Query: 180 AKIGTSEIEFLEFKISSQGL*LQPHIVEKINQFSDKLLD*KQL 52
A++ +I FL +I Q HI+E IN+F D L D KQL
Sbjct: 434 AQLFKKKINFLGLEIDEGTHKPQGHILEHINKFPDTLEDKKQL 476
Score = 25.4 bits (54), Expect(4) = 1e-32
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -3
Query: 744 IELKDKDKIIRVIPMRYNP 688
I+L D K I+V PM+Y+P
Sbjct: 234 IKLSDPSKAIKVKPMKYSP 252
Score = 22.3 bits (46), Expect(4) = 1e-32
Identities = 8/11 (72%), Positives = 11/11 (100%)
Frame = -2
Query: 34 YASDFIPQLAE 2
YASD+IP+LA+
Sbjct: 485 YASDYIPKLAQ 495
>gb|AGT42091.1| reverse transcriptase [Cauliflower mosaic virus]
Length = 675
Score = 81.6 bits (200), Expect(4) = 1e-32
Identities = 49/113 (43%), Positives = 65/113 (57%), Gaps = 1/113 (0%)
Frame = -1
Query: 689 LNEFLDLKLIQDSKFSHSLPAFMVRNHEEQIRRKPRLMVVNNKQLNDATIFDGYFL-SCE 513
+ E LDLK+I+ SK H PAF+V N E+ R K R MVVN K +N AT+ D Y L + +
Sbjct: 262 IKELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGKKR-MVVNYKAMNKATVGDAYNLPNKD 320
Query: 512 NMINQIYXXXXXXXXXXXXXFWQIKMYIDSIPLTTFSTPQG*YEWLVMSFGLK 354
++ I FWQ+ + +S PLT F+ PQG YEW V+ FGLK
Sbjct: 321 ELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQGHYEWNVVPFGLK 373
Score = 78.2 bits (191), Expect(4) = 1e-32
Identities = 46/103 (44%), Positives = 60/103 (58%), Gaps = 1/103 (0%)
Frame = -3
Query: 357 KTPQIFQIKMDNIFKSY-SFFYVYVDDILVASNSRTEHLSHLDKFAELCLQHGL*LSHTK 181
+ P IFQ MD F+ + F VYVDDILV SN+ +HL H+ + C QHG+ LS K
Sbjct: 374 QAPSIFQRHMDEAFRVFRKFCCVYVDDILVFSNNEEDHLLHVAMILQKCNQHGIILSKKK 433
Query: 180 AKIGTSEIEFLEFKISSQGL*LQPHIVEKINQFSDKLLD*KQL 52
A++ +I FL +I Q HI+E IN+F D L D KQL
Sbjct: 434 AQLFKKKINFLGLEIDEGTHKPQGHILEHINKFPDTLEDKKQL 476
Score = 25.4 bits (54), Expect(4) = 1e-32
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -3
Query: 744 IELKDKDKIIRVIPMRYNP 688
I+L D K I+V PM+Y+P
Sbjct: 234 IKLSDPSKAIKVKPMKYSP 252
Score = 22.3 bits (46), Expect(4) = 1e-32
Identities = 8/11 (72%), Positives = 11/11 (100%)
Frame = -2
Query: 34 YASDFIPQLAE 2
YASD+IP+LA+
Sbjct: 485 YASDYIPKLAQ 495
>gb|AGT42077.1| reverse transcriptase [Cauliflower mosaic virus]
Length = 675
Score = 81.6 bits (200), Expect(4) = 1e-32
Identities = 49/113 (43%), Positives = 65/113 (57%), Gaps = 1/113 (0%)
Frame = -1
Query: 689 LNEFLDLKLIQDSKFSHSLPAFMVRNHEEQIRRKPRLMVVNNKQLNDATIFDGYFL-SCE 513
+ E LDLK+I+ SK H PAF+V N E+ R K R MVVN K +N AT+ D Y L + +
Sbjct: 262 IKELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGKKR-MVVNYKAMNKATVGDAYNLPNKD 320
Query: 512 NMINQIYXXXXXXXXXXXXXFWQIKMYIDSIPLTTFSTPQG*YEWLVMSFGLK 354
++ I FWQ+ + +S PLT F+ PQG YEW V+ FGLK
Sbjct: 321 ELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQGHYEWNVVPFGLK 373
Score = 78.2 bits (191), Expect(4) = 1e-32
Identities = 46/103 (44%), Positives = 60/103 (58%), Gaps = 1/103 (0%)
Frame = -3
Query: 357 KTPQIFQIKMDNIFKSY-SFFYVYVDDILVASNSRTEHLSHLDKFAELCLQHGL*LSHTK 181
+ P IFQ MD F+ + F VYVDDILV SN+ +HL H+ + C QHG+ LS K
Sbjct: 374 QAPSIFQRHMDEAFRVFRKFCCVYVDDILVFSNNEEDHLLHVAMILQKCNQHGIILSKKK 433
Query: 180 AKIGTSEIEFLEFKISSQGL*LQPHIVEKINQFSDKLLD*KQL 52
A++ +I FL +I Q HI+E IN+F D L D KQL
Sbjct: 434 AQLFKKKINFLGLEIDEGTHKPQGHILEHINKFPDTLEDKKQL 476
Score = 25.4 bits (54), Expect(4) = 1e-32
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -3
Query: 744 IELKDKDKIIRVIPMRYNP 688
I+L D K I+V PM+Y+P
Sbjct: 234 IKLSDPSKAIKVKPMKYSP 252
Score = 22.3 bits (46), Expect(4) = 1e-32
Identities = 8/11 (72%), Positives = 11/11 (100%)
Frame = -2
Query: 34 YASDFIPQLAE 2
YASD+IP+LA+
Sbjct: 485 YASDYIPKLAQ 495
>gb|AGT42063.1| reverse transcriptase [Cauliflower mosaic virus]
gi|530722459|gb|AGT42119.1| reverse transcriptase
[Cauliflower mosaic virus] gi|530722507|gb|AGT42161.1|
reverse transcriptase [Cauliflower mosaic virus]
gi|530722515|gb|AGT42168.1| reverse transcriptase
[Cauliflower mosaic virus]
Length = 675
Score = 81.6 bits (200), Expect(4) = 1e-32
Identities = 49/113 (43%), Positives = 65/113 (57%), Gaps = 1/113 (0%)
Frame = -1
Query: 689 LNEFLDLKLIQDSKFSHSLPAFMVRNHEEQIRRKPRLMVVNNKQLNDATIFDGYFL-SCE 513
+ E LDLK+I+ SK H PAF+V N E+ R K R MVVN K +N AT+ D Y L + +
Sbjct: 262 IKELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGKKR-MVVNYKAMNKATVGDAYNLPNKD 320
Query: 512 NMINQIYXXXXXXXXXXXXXFWQIKMYIDSIPLTTFSTPQG*YEWLVMSFGLK 354
++ I FWQ+ + +S PLT F+ PQG YEW V+ FGLK
Sbjct: 321 ELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQGHYEWNVVPFGLK 373
Score = 78.2 bits (191), Expect(4) = 1e-32
Identities = 46/103 (44%), Positives = 60/103 (58%), Gaps = 1/103 (0%)
Frame = -3
Query: 357 KTPQIFQIKMDNIFKSY-SFFYVYVDDILVASNSRTEHLSHLDKFAELCLQHGL*LSHTK 181
+ P IFQ MD F+ + F VYVDDILV SN+ +HL H+ + C QHG+ LS K
Sbjct: 374 QAPSIFQRHMDEAFRVFRKFCCVYVDDILVFSNNEEDHLLHVAMILQKCNQHGIILSKKK 433
Query: 180 AKIGTSEIEFLEFKISSQGL*LQPHIVEKINQFSDKLLD*KQL 52
A++ +I FL +I Q HI+E IN+F D L D KQL
Sbjct: 434 AQLFKKKINFLGLEIDEGTHKPQGHILEHINKFPDTLEDKKQL 476
Score = 25.4 bits (54), Expect(4) = 1e-32
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -3
Query: 744 IELKDKDKIIRVIPMRYNP 688
I+L D K I+V PM+Y+P
Sbjct: 234 IKLSDPSKAIKVKPMKYSP 252
Score = 22.3 bits (46), Expect(4) = 1e-32
Identities = 8/11 (72%), Positives = 11/11 (100%)
Frame = -2
Query: 34 YASDFIPQLAE 2
YASD+IP+LA+
Sbjct: 485 YASDYIPKLAQ 495