BLASTX nr result
ID: Catharanthus22_contig00005706
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus22_contig00005706
(920 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006395894.1| hypothetical protein EUTSA_v10005360mg, part... 55 4e-12
dbj|BAA22288.1| polyprotein [Oryza australiensis] 54 8e-12
ref|XP_006397405.1| hypothetical protein EUTSA_v10022479mg, part... 54 1e-11
ref|XP_006392410.1| hypothetical protein EUTSA_v10024012mg, part... 52 3e-11
gb|ADB85430.1| putative retrotransposon protein [Phyllostachys e... 53 3e-10
gb|ADB85429.1| putative retrotransposon protein [Phyllostachys e... 52 6e-10
gb|ABF97047.1| retrotransposon protein, putative, Ty1-copia subc... 52 2e-08
gb|AAP44605.1| putative polyprotein [Oryza sativa Japonica Group] 52 2e-08
gb|ABA99022.2| retrotransposon protein, putative, Ty1-copia subc... 52 3e-08
gb|ABG22008.1| retrotransposon protein, putative, Ty1-copia subc... 52 4e-08
emb|CAE03845.1| OSJNBb0089K06.4 [Oryza sativa Japonica Group] 52 4e-08
gb|EOY04065.1| Retrotransposon protein, putative [Theobroma cacao] 46 6e-08
emb|CAD39797.2| OSJNBa0071G03.10 [Oryza sativa Japonica Group] 52 9e-08
emb|CAE04463.2| OSJNBa0029L02.4 [Oryza sativa Japonica Group] 52 9e-08
gb|AAV85747.1| Integrase core domain, putative [Oryza sativa Jap... 50 1e-07
emb|CAE04999.2| OSJNBb0093G06.7 [Oryza sativa Japonica Group] 50 2e-07
gb|ABA97705.1| retrotransposon protein, putative, Ty1-copia subc... 50 2e-07
gb|AAX96621.1| retrotransposon protein, putative, Ty1-copia sub-... 50 3e-07
ref|XP_004959164.1| PREDICTED: uncharacterized protein LOC101784... 50 3e-07
ref|XP_004959337.1| PREDICTED: uncharacterized protein LOC101761... 50 3e-07
>ref|XP_006395894.1| hypothetical protein EUTSA_v10005360mg, partial [Eutrema
salsugineum] gi|557092533|gb|ESQ33180.1| hypothetical
protein EUTSA_v10005360mg, partial [Eutrema salsugineum]
Length = 214
Score = 55.5 bits (132), Expect(2) = 4e-12
Identities = 26/30 (86%), Positives = 29/30 (96%)
Frame = +3
Query: 681 LRSVLEKNKLSGTNFLDWARNLRIVLKQEK 770
LRSVLEK+KL+G+NFLDW RNLRIVLKQEK
Sbjct: 10 LRSVLEKDKLNGSNFLDWYRNLRIVLKQEK 39
Score = 43.1 bits (100), Expect(2) = 4e-12
Identities = 25/52 (48%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +2
Query: 767 KKLYVLEXXXXXXXXXXXX-RVEKDAYSKHKNDSNDVTCLMLATMESKLQKQ 919
KK YVLE E++ Y KH +D DV CLMLATM S LQKQ
Sbjct: 39 KKEYVLEKSLPPEKPKSNAPHAERNTYEKHASDMVDVCCLMLATMNSDLQKQ 90
>dbj|BAA22288.1| polyprotein [Oryza australiensis]
Length = 1317
Score = 54.3 bits (129), Expect(2) = 8e-12
Identities = 24/30 (80%), Positives = 28/30 (93%)
Frame = +3
Query: 681 LRSVLEKNKLSGTNFLDWARNLRIVLKQEK 770
LRS+LEK KL+GTNF+DW RNLRIVLKQE+
Sbjct: 12 LRSILEKEKLNGTNFMDWYRNLRIVLKQER 41
Score = 43.1 bits (100), Expect(2) = 8e-12
Identities = 21/51 (41%), Positives = 28/51 (54%)
Frame = +2
Query: 767 KKLYVLEXXXXXXXXXXXXRVEKDAYSKHKNDSNDVTCLMLATMESKLQKQ 919
+K YVLE + + KH ND+ D++CLMLATM +LQKQ
Sbjct: 41 RKEYVLEVPYPEELPNNATATARRGFEKHTNDALDISCLMLATMSPELQKQ 91
>ref|XP_006397405.1| hypothetical protein EUTSA_v10022479mg, partial [Eutrema
salsugineum] gi|557098463|gb|ESQ38858.1| hypothetical
protein EUTSA_v10022479mg, partial [Eutrema salsugineum]
Length = 211
Score = 53.9 bits (128), Expect(2) = 1e-11
Identities = 25/30 (83%), Positives = 29/30 (96%)
Frame = +3
Query: 681 LRSVLEKNKLSGTNFLDWARNLRIVLKQEK 770
LRSVLEK+KL+G+NFL+W RNLRIVLKQEK
Sbjct: 10 LRSVLEKDKLNGSNFLEWYRNLRIVLKQEK 39
Score = 43.1 bits (100), Expect(2) = 1e-11
Identities = 25/52 (48%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +2
Query: 767 KKLYVLEXXXXXXXXXXXX-RVEKDAYSKHKNDSNDVTCLMLATMESKLQKQ 919
KK YVLE E++ Y KH +D DV CLMLATM S LQKQ
Sbjct: 39 KKEYVLEKSLPPEKPKSNAPHAERNTYEKHASDMVDVCCLMLATMNSDLQKQ 90
>ref|XP_006392410.1| hypothetical protein EUTSA_v10024012mg, partial [Eutrema
salsugineum] gi|557088916|gb|ESQ29696.1| hypothetical
protein EUTSA_v10024012mg, partial [Eutrema salsugineum]
Length = 211
Score = 52.4 bits (124), Expect(2) = 3e-11
Identities = 24/30 (80%), Positives = 29/30 (96%)
Frame = +3
Query: 681 LRSVLEKNKLSGTNFLDWARNLRIVLKQEK 770
LRSVLEK+KL+G+NFL+W +NLRIVLKQEK
Sbjct: 10 LRSVLEKDKLNGSNFLEWYQNLRIVLKQEK 39
Score = 43.1 bits (100), Expect(2) = 3e-11
Identities = 25/52 (48%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +2
Query: 767 KKLYVLEXXXXXXXXXXXX-RVEKDAYSKHKNDSNDVTCLMLATMESKLQKQ 919
KK YVLE E++ Y KH +D DV CLMLATM S LQKQ
Sbjct: 39 KKEYVLEKSLPPEKPKSNAPHAERNTYEKHASDMVDVCCLMLATMNSDLQKQ 90
>gb|ADB85430.1| putative retrotransposon protein [Phyllostachys edulis]
Length = 896
Score = 53.1 bits (126), Expect(2) = 3e-10
Identities = 23/30 (76%), Positives = 28/30 (93%)
Frame = +3
Query: 681 LRSVLEKNKLSGTNFLDWARNLRIVLKQEK 770
LRS+LEK KL+GTNF DW+RNLRIVL+Q+K
Sbjct: 15 LRSILEKEKLNGTNFADWSRNLRIVLRQDK 44
Score = 38.9 bits (89), Expect(2) = 3e-10
Identities = 23/51 (45%), Positives = 27/51 (52%)
Frame = +2
Query: 767 KKLYVLEXXXXXXXXXXXXRVEKDAYSKHKNDSNDVTCLMLATMESKLQKQ 919
KK +VLE K AY K ++S DV+CLMLA M S LQKQ
Sbjct: 44 KKEHVLEEPIPDVPTENAAAAIKTAYKKACDESLDVSCLMLAAMNSDLQKQ 94
>gb|ADB85429.1| putative retrotransposon protein [Phyllostachys edulis]
Length = 1313
Score = 51.6 bits (122), Expect(2) = 6e-10
Identities = 22/30 (73%), Positives = 28/30 (93%)
Frame = +3
Query: 681 LRSVLEKNKLSGTNFLDWARNLRIVLKQEK 770
LRS+L+K KL+GTNF DW+RNLRIVL+Q+K
Sbjct: 98 LRSILKKEKLNGTNFADWSRNLRIVLRQDK 127
Score = 39.3 bits (90), Expect(2) = 6e-10
Identities = 23/51 (45%), Positives = 27/51 (52%)
Frame = +2
Query: 767 KKLYVLEXXXXXXXXXXXXRVEKDAYSKHKNDSNDVTCLMLATMESKLQKQ 919
KK +VLE K AY K ++S DV+CLMLA M S LQKQ
Sbjct: 127 KKEHVLEEPIPDVPADNAAATLKSAYKKACDESLDVSCLMLAAMNSDLQKQ 177
>gb|ABF97047.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1248
Score = 52.4 bits (124), Expect(2) = 2e-08
Identities = 23/29 (79%), Positives = 27/29 (93%)
Frame = +3
Query: 681 LRSVLEKNKLSGTNFLDWARNLRIVLKQE 767
LRS+LEK KL+GTNF+DW RNLRIVL+QE
Sbjct: 78 LRSILEKEKLTGTNFMDWYRNLRIVLRQE 106
Score = 33.1 bits (74), Expect(2) = 2e-08
Identities = 14/30 (46%), Positives = 21/30 (70%)
Frame = +2
Query: 830 EKDAYSKHKNDSNDVTCLMLATMESKLQKQ 919
++ + K ND D++CLMLATM +LQ+Q
Sbjct: 128 QRREHEKRCNDYLDISCLMLATMSPELQRQ 157
>gb|AAP44605.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1161
Score = 52.4 bits (124), Expect(2) = 2e-08
Identities = 23/29 (79%), Positives = 27/29 (93%)
Frame = +3
Query: 681 LRSVLEKNKLSGTNFLDWARNLRIVLKQE 767
LRS+LEK KL+GTNF+DW RNLRIVL+QE
Sbjct: 11 LRSILEKEKLTGTNFMDWYRNLRIVLRQE 39
Score = 33.1 bits (74), Expect(2) = 2e-08
Identities = 14/30 (46%), Positives = 21/30 (70%)
Frame = +2
Query: 830 EKDAYSKHKNDSNDVTCLMLATMESKLQKQ 919
++ + K ND D++CLMLATM +LQ+Q
Sbjct: 61 QRREHEKRCNDYLDISCLMLATMSPELQRQ 90
>gb|ABA99022.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 829
Score = 52.4 bits (124), Expect(2) = 3e-08
Identities = 23/29 (79%), Positives = 27/29 (93%)
Frame = +3
Query: 681 LRSVLEKNKLSGTNFLDWARNLRIVLKQE 767
LRS+LEK KL+GTNF+DW RNLRIVL+QE
Sbjct: 90 LRSILEKEKLTGTNFMDWYRNLRIVLRQE 118
Score = 33.1 bits (74), Expect(2) = 3e-08
Identities = 14/30 (46%), Positives = 21/30 (70%)
Frame = +2
Query: 830 EKDAYSKHKNDSNDVTCLMLATMESKLQKQ 919
++ + K ND D++CLMLATM +LQ+Q
Sbjct: 140 QRREHEKRCNDYLDISCLMLATMSPELQRQ 169
>gb|ABG22008.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 932
Score = 52.4 bits (124), Expect(2) = 4e-08
Identities = 23/29 (79%), Positives = 27/29 (93%)
Frame = +3
Query: 681 LRSVLEKNKLSGTNFLDWARNLRIVLKQE 767
LRS+LEK KL+GTNF+DW RNLRIVL+QE
Sbjct: 11 LRSILEKEKLTGTNFMDWYRNLRIVLRQE 39
Score = 32.3 bits (72), Expect(2) = 4e-08
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +2
Query: 830 EKDAYSKHKNDSNDVTCLMLATMESKLQKQ 919
++ + K ND D++CLMLATM +LQ Q
Sbjct: 61 QRREHEKRCNDYLDISCLMLATMSPELQSQ 90
>emb|CAE03845.1| OSJNBb0089K06.4 [Oryza sativa Japonica Group]
Length = 873
Score = 52.4 bits (124), Expect(2) = 4e-08
Identities = 23/29 (79%), Positives = 27/29 (93%)
Frame = +3
Query: 681 LRSVLEKNKLSGTNFLDWARNLRIVLKQE 767
LRS+LEK KL+GTNF+DW RNLRIVL+QE
Sbjct: 11 LRSILEKEKLTGTNFMDWYRNLRIVLRQE 39
Score = 32.3 bits (72), Expect(2) = 4e-08
Identities = 12/26 (46%), Positives = 20/26 (76%)
Frame = +2
Query: 842 YSKHKNDSNDVTCLMLATMESKLQKQ 919
+ + N+ +D++CLMLATM K+Q+Q
Sbjct: 65 HERRCNEYHDISCLMLATMSPKIQRQ 90
>gb|EOY04065.1| Retrotransposon protein, putative [Theobroma cacao]
Length = 289
Score = 46.2 bits (108), Expect(2) = 6e-08
Identities = 24/35 (68%), Positives = 29/35 (82%), Gaps = 1/35 (2%)
Frame = +3
Query: 681 LRSVLEKNKLSGTNFLDWARNLRIVLKQE-KSYMY 782
LRS+L+ NKL G NFLD RNL+IVLKQE KSY++
Sbjct: 7 LRSILDANKLIGPNFLDSFRNLKIVLKQEKKSYIF 41
Score = 38.1 bits (87), Expect(2) = 6e-08
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = +2
Query: 767 KKLYVLEXXXXXXXXXXXXRVEKDAYSKHKNDSNDVTCLMLATMESKLQKQ 919
KK Y+ + +K+A+ +HK+D + C+MLA+M +LQKQ
Sbjct: 36 KKSYIFDTSIPPVPTTDANVEDKEAHQRHKDDDDQAACVMLASMTLELQKQ 86
>emb|CAD39797.2| OSJNBa0071G03.10 [Oryza sativa Japonica Group]
Length = 948
Score = 52.4 bits (124), Expect(2) = 9e-08
Identities = 23/29 (79%), Positives = 27/29 (93%)
Frame = +3
Query: 681 LRSVLEKNKLSGTNFLDWARNLRIVLKQE 767
LRS+LEK KL+GTNF+DW RNLRIVL+QE
Sbjct: 88 LRSILEKEKLTGTNFMDWYRNLRIVLRQE 116
Score = 31.2 bits (69), Expect(2) = 9e-08
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +2
Query: 830 EKDAYSKHKNDSNDVTCLMLATMESKLQKQ 919
++ + + ND D++CLMLATM +LQ Q
Sbjct: 138 QRRKHERRCNDYLDISCLMLATMSPELQSQ 167
>emb|CAE04463.2| OSJNBa0029L02.4 [Oryza sativa Japonica Group]
Length = 746
Score = 52.0 bits (123), Expect(2) = 9e-08
Identities = 24/35 (68%), Positives = 28/35 (80%)
Frame = +3
Query: 681 LRSVLEKNKLSGTNFLDWARNLRIVLKQEKSYMYL 785
LRS+LEK KL GTNF+DW RNLRIVL+QE+ L
Sbjct: 51 LRSILEKEKLIGTNFMDWYRNLRIVLRQEQKEFVL 85
Score = 31.6 bits (70), Expect(2) = 9e-08
Identities = 13/30 (43%), Positives = 21/30 (70%)
Frame = +2
Query: 830 EKDAYSKHKNDSNDVTCLMLATMESKLQKQ 919
++ + K ND D++CL+LATM +LQ+Q
Sbjct: 101 QRREHEKRCNDYLDISCLILATMSPELQRQ 130
>gb|AAV85747.1| Integrase core domain, putative [Oryza sativa Japonica Group]
gi|62701883|gb|AAX92956.1| retrotransposon protein,
putative, Ty1-copia sub-class [Oryza sativa Japonica
Group] gi|108864259|gb|ABA92827.2| retrotransposon
protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1184
Score = 50.1 bits (118), Expect(2) = 1e-07
Identities = 22/29 (75%), Positives = 26/29 (89%)
Frame = +3
Query: 681 LRSVLEKNKLSGTNFLDWARNLRIVLKQE 767
LRS+LEK KL+GTN +DW RNLRIVL+QE
Sbjct: 11 LRSILEKEKLTGTNIMDWYRNLRIVLRQE 39
Score = 33.1 bits (74), Expect(2) = 1e-07
Identities = 14/30 (46%), Positives = 21/30 (70%)
Frame = +2
Query: 830 EKDAYSKHKNDSNDVTCLMLATMESKLQKQ 919
++ + K ND D++CLMLATM +LQ+Q
Sbjct: 61 QRREHEKRCNDYLDISCLMLATMSPELQRQ 90
>emb|CAE04999.2| OSJNBb0093G06.7 [Oryza sativa Japonica Group]
Length = 923
Score = 49.7 bits (117), Expect(2) = 2e-07
Identities = 22/29 (75%), Positives = 26/29 (89%)
Frame = +3
Query: 681 LRSVLEKNKLSGTNFLDWARNLRIVLKQE 767
LRS+LEK KL+GTNF+DW NLRIVL+QE
Sbjct: 11 LRSILEKEKLTGTNFMDWYGNLRIVLRQE 39
Score = 33.1 bits (74), Expect(2) = 2e-07
Identities = 14/30 (46%), Positives = 21/30 (70%)
Frame = +2
Query: 830 EKDAYSKHKNDSNDVTCLMLATMESKLQKQ 919
++ + K ND D++CLMLATM +LQ+Q
Sbjct: 61 QRREHKKQCNDYLDISCLMLATMSPELQRQ 90
>gb|ABA97705.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 810
Score = 50.1 bits (118), Expect(2) = 2e-07
Identities = 22/29 (75%), Positives = 26/29 (89%)
Frame = +3
Query: 681 LRSVLEKNKLSGTNFLDWARNLRIVLKQE 767
LRS+LEK KL+G NF+DW RNLRIVL+QE
Sbjct: 11 LRSILEKEKLNGINFMDWYRNLRIVLRQE 39
Score = 32.7 bits (73), Expect(2) = 2e-07
Identities = 14/26 (53%), Positives = 19/26 (73%)
Frame = +2
Query: 842 YSKHKNDSNDVTCLMLATMESKLQKQ 919
+ K ND D++CLMLATM +LQ+Q
Sbjct: 65 HEKRCNDYLDISCLMLATMSPELQRQ 90
>gb|AAX96621.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group] gi|77550176|gb|ABA92973.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 591
Score = 50.4 bits (119), Expect(2) = 3e-07
Identities = 22/29 (75%), Positives = 26/29 (89%)
Frame = +3
Query: 681 LRSVLEKNKLSGTNFLDWARNLRIVLKQE 767
LRS+LEK KL+GTNF+DW NLRIVL+QE
Sbjct: 33 LRSILEKEKLTGTNFMDWYHNLRIVLRQE 61
Score = 31.6 bits (70), Expect(2) = 3e-07
Identities = 13/30 (43%), Positives = 21/30 (70%)
Frame = +2
Query: 830 EKDAYSKHKNDSNDVTCLMLATMESKLQKQ 919
++ + + N+ D++CLMLATM KLQ+Q
Sbjct: 83 QRREHERRCNEYLDISCLMLATMSLKLQRQ 112
>ref|XP_004959164.1| PREDICTED: uncharacterized protein LOC101784395, partial [Setaria
italica]
Length = 696
Score = 50.4 bits (119), Expect(2) = 3e-07
Identities = 23/30 (76%), Positives = 27/30 (90%)
Frame = +3
Query: 681 LRSVLEKNKLSGTNFLDWARNLRIVLKQEK 770
LRSVLEK+KL+GTN+ DW RNLRIVL+ EK
Sbjct: 256 LRSVLEKDKLNGTNYSDWIRNLRIVLRAEK 285
Score = 31.2 bits (69), Expect(2) = 3e-07
Identities = 15/29 (51%), Positives = 21/29 (72%)
Frame = +2
Query: 833 KDAYSKHKNDSNDVTCLMLATMESKLQKQ 919
K+AY K + + +V+CLMLA ME +LQ Q
Sbjct: 307 KNAYKKACDANLEVSCLMLACMEPELQMQ 335
>ref|XP_004959337.1| PREDICTED: uncharacterized protein LOC101761045, partial [Setaria
italica]
Length = 689
Score = 50.4 bits (119), Expect(2) = 3e-07
Identities = 23/30 (76%), Positives = 27/30 (90%)
Frame = +3
Query: 681 LRSVLEKNKLSGTNFLDWARNLRIVLKQEK 770
LRSVLEK+KL+GTN+ DW RNLRIVL+ EK
Sbjct: 3 LRSVLEKDKLNGTNYSDWIRNLRIVLRAEK 32
Score = 31.2 bits (69), Expect(2) = 3e-07
Identities = 15/29 (51%), Positives = 21/29 (72%)
Frame = +2
Query: 833 KDAYSKHKNDSNDVTCLMLATMESKLQKQ 919
K+AY K + + +V+CLMLA ME +LQ Q
Sbjct: 54 KNAYKKACDANLEVSCLMLACMEPELQMQ 82