BLASTX nr result
ID: Catharanthus22_contig00005612
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus22_contig00005612
(323 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002871784.1| hypothetical protein ARALYDRAFT_488653 [Arab... 94 1e-17
ref|NP_568358.1| plastid-specific 50S ribosomal protein 6 [Arabi... 93 4e-17
ref|XP_006400330.1| hypothetical protein EUTSA_v10015071mg [Eutr... 92 7e-17
ref|XP_006288938.1| hypothetical protein CARUB_v10002303mg [Caps... 91 1e-16
ref|XP_004238050.1| PREDICTED: 50S ribosomal protein 6, chloropl... 90 3e-16
ref|XP_006356805.1| PREDICTED: 50S ribosomal protein 6, chloropl... 90 4e-16
ref|XP_002277800.1| PREDICTED: 50S ribosomal protein 6, chloropl... 89 5e-16
gb|EXC01136.1| 50S ribosomal protein 6 [Morus notabilis] 85 1e-14
sp|P82411.1|PSRP6_SPIOL RecName: Full=50S ribosomal protein 6, c... 84 2e-14
ref|XP_002302374.1| plastid-specific ribosomal family protein [P... 83 3e-14
ref|XP_004301446.1| PREDICTED: 50S ribosomal protein 6, chloropl... 82 1e-13
ref|XP_006433698.1| hypothetical protein CICLE_v10002778mg [Citr... 80 2e-13
ref|XP_006472361.1| PREDICTED: 50S ribosomal protein 6, chloropl... 79 5e-13
ref|XP_002510018.1| 50S ribosomal protein CL25, chloroplast prec... 79 5e-13
gb|EMJ00316.1| hypothetical protein PRUPE_ppa020853mg [Prunus pe... 79 8e-13
gb|EMJ16314.1| hypothetical protein PRUPE_ppa012953mg [Prunus pe... 78 1e-12
ref|XP_004979460.1| PREDICTED: 50S ribosomal protein 6, chloropl... 76 5e-12
gb|EMJ27548.1| hypothetical protein PRUPE_ppa022547mg [Prunus pe... 75 9e-12
gb|ESW09265.1| hypothetical protein PHAVU_009G113500g [Phaseolus... 74 2e-11
ref|XP_002456091.1| hypothetical protein SORBIDRAFT_03g030290 [S... 74 2e-11
>ref|XP_002871784.1| hypothetical protein ARALYDRAFT_488653 [Arabidopsis lyrata subsp.
lyrata] gi|297317621|gb|EFH48043.1| hypothetical protein
ARALYDRAFT_488653 [Arabidopsis lyrata subsp. lyrata]
Length = 108
Score = 94.4 bits (233), Expect = 1e-17
Identities = 49/88 (55%), Positives = 58/88 (65%), Gaps = 1/88 (1%)
Frame = -2
Query: 262 MSVSAIFGTRLAAVSIPPSITGGTTGNRAVPRIGYGG-TRLVTECSSRPQKKATAHHKKS 86
MSVSAIFGT + V+ P + VP +G GG +V ECSSRPQKK+TAHH+KS
Sbjct: 1 MSVSAIFGTGIVTVAASPVLR-----QFQVPTLGNGGGLGMVIECSSRPQKKSTAHHRKS 55
Query: 85 RPRKTQPWDIRRGPTVYXXXXXXXPEWT 2
RP+KTQPWDI+R PTVY EWT
Sbjct: 56 RPKKTQPWDIKRKPTVYAPLPPLPAEWT 83
>ref|NP_568358.1| plastid-specific 50S ribosomal protein 6 [Arabidopsis thaliana]
gi|75171293|sp|Q9FKP0.1|PSRP6_ARATH RecName: Full=50S
ribosomal protein 6, chloroplastic; AltName: Full=CL25;
AltName: Full=Plastid-specific 50S ribosomal protein 6;
Short=PSRP-6; Flags: Precursor
gi|10177888|dbj|BAB11220.1| unnamed protein product
[Arabidopsis thaliana] gi|14517428|gb|AAK62604.1|
AT5g17870/MPI7_10 [Arabidopsis thaliana]
gi|20147339|gb|AAM10383.1| AT5g17870/MPI7_10
[Arabidopsis thaliana] gi|21554906|gb|AAM63726.1|
plastid-specific ribosomal protein 6 precursor
(Psrp-6)-like [Arabidopsis thaliana]
gi|332005097|gb|AED92480.1| plastid-specific 50S
ribosomal protein 6 [Arabidopsis thaliana]
Length = 106
Score = 92.8 bits (229), Expect = 4e-17
Identities = 47/88 (53%), Positives = 59/88 (67%), Gaps = 1/88 (1%)
Frame = -2
Query: 262 MSVSAIFGTRLAAVSIPPSITGGTTGNRAVPRIGYGG-TRLVTECSSRPQKKATAHHKKS 86
MSVSAIFGT + V+ P + VP++G GG +V ECSSRPQKK+TAHH+K+
Sbjct: 1 MSVSAIFGTGIVTVAASPVLR-----QFQVPKLGNGGGLGMVIECSSRPQKKSTAHHRKT 55
Query: 85 RPRKTQPWDIRRGPTVYXXXXXXXPEWT 2
RP+KTQPWDI+R PTVY EW+
Sbjct: 56 RPKKTQPWDIKRKPTVYAPLPPLPAEWS 83
>ref|XP_006400330.1| hypothetical protein EUTSA_v10015071mg [Eutrema salsugineum]
gi|557101420|gb|ESQ41783.1| hypothetical protein
EUTSA_v10015071mg [Eutrema salsugineum]
Length = 109
Score = 92.0 bits (227), Expect = 7e-17
Identities = 48/87 (55%), Positives = 59/87 (67%), Gaps = 1/87 (1%)
Frame = -2
Query: 262 MSVSAIFGTRLAAVSIPPSITGGTTGNRAVPRIGYGG-TRLVTECSSRPQKKATAHHKKS 86
MSVSAIFGT + V+ PS+ VP+ G GG +V ECSSRPQKK+TAHH+K+
Sbjct: 1 MSVSAIFGTGIVTVAASPSLR-----QFQVPKSGNGGGLGMVIECSSRPQKKSTAHHRKT 55
Query: 85 RPRKTQPWDIRRGPTVYXXXXXXXPEW 5
RP+KTQPWDI+R PTVY P+W
Sbjct: 56 RPKKTQPWDIKRKPTVYAPLPPLPPDW 82
>ref|XP_006288938.1| hypothetical protein CARUB_v10002303mg [Capsella rubella]
gi|482557644|gb|EOA21836.1| hypothetical protein
CARUB_v10002303mg [Capsella rubella]
Length = 109
Score = 91.3 bits (225), Expect = 1e-16
Identities = 47/88 (53%), Positives = 58/88 (65%), Gaps = 1/88 (1%)
Frame = -2
Query: 262 MSVSAIFGTRLAAVSIPPSITGGTTGNRAVPRIGYGG-TRLVTECSSRPQKKATAHHKKS 86
MSVSAIFGT + V+ + VP++G GG +V ECSSRPQKK+TAHH+KS
Sbjct: 1 MSVSAIFGTGIVTVAASSPVLR----QFQVPKLGNGGGLGMVIECSSRPQKKSTAHHRKS 56
Query: 85 RPRKTQPWDIRRGPTVYXXXXXXXPEWT 2
RP+K+QPWDI+R PTVY EWT
Sbjct: 57 RPKKSQPWDIKRKPTVYAPLPPLPAEWT 84
>ref|XP_004238050.1| PREDICTED: 50S ribosomal protein 6, chloroplastic-like [Solanum
lycopersicum]
Length = 111
Score = 90.1 bits (222), Expect = 3e-16
Identities = 50/92 (54%), Positives = 58/92 (63%), Gaps = 5/92 (5%)
Frame = -2
Query: 262 MSVSAIFGTRLAAVSIPPSI-----TGGTTGNRAVPRIGYGGTRLVTECSSRPQKKATAH 98
MS SAIFG ++A + ++ TGG T + P GG LV ECSSRPQKKATAH
Sbjct: 1 MSASAIFGLQMAVLPRSSTVSATGFTGGATRLASAPT-SIGG--LVIECSSRPQKKATAH 57
Query: 97 HKKSRPRKTQPWDIRRGPTVYXXXXXXXPEWT 2
HKK+RPRKTQ WDIRRGP VY EW+
Sbjct: 58 HKKTRPRKTQAWDIRRGPAVYAPLPPLPSEWS 89
>ref|XP_006356805.1| PREDICTED: 50S ribosomal protein 6, chloroplastic-like [Solanum
tuberosum]
Length = 111
Score = 89.7 bits (221), Expect = 4e-16
Identities = 50/92 (54%), Positives = 57/92 (61%), Gaps = 5/92 (5%)
Frame = -2
Query: 262 MSVSAIFGTRLAAVSIPPSI-----TGGTTGNRAVPRIGYGGTRLVTECSSRPQKKATAH 98
MS SAIFG ++ + ++ TGG T A P GG LV ECSSRPQKKATAH
Sbjct: 1 MSASAIFGLQMVVLPRSSTVSTTGFTGGATRLAAAPT-SVGG--LVIECSSRPQKKATAH 57
Query: 97 HKKSRPRKTQPWDIRRGPTVYXXXXXXXPEWT 2
HKK+RPRKTQ WDIRRGP VY EW+
Sbjct: 58 HKKTRPRKTQAWDIRRGPAVYAPLPPLPSEWS 89
>ref|XP_002277800.1| PREDICTED: 50S ribosomal protein 6, chloroplastic [Vitis vinifera]
Length = 108
Score = 89.4 bits (220), Expect = 5e-16
Identities = 49/87 (56%), Positives = 55/87 (63%)
Frame = -2
Query: 262 MSVSAIFGTRLAAVSIPPSITGGTTGNRAVPRIGYGGTRLVTECSSRPQKKATAHHKKSR 83
MS+SAIFG AAV S +A PR+G G V ECSSRPQKK T+HH K+R
Sbjct: 1 MSISAIFG---AAVPNRCSTAASFGARKAAPRLGGGAA--VIECSSRPQKKGTSHHMKTR 55
Query: 82 PRKTQPWDIRRGPTVYXXXXXXXPEWT 2
PRKTQPWDI+R PTVY PEWT
Sbjct: 56 PRKTQPWDIKRRPTVYAPLPPLPPEWT 82
>gb|EXC01136.1| 50S ribosomal protein 6 [Morus notabilis]
Length = 115
Score = 84.7 bits (208), Expect = 1e-14
Identities = 44/87 (50%), Positives = 53/87 (60%), Gaps = 1/87 (1%)
Frame = -2
Query: 262 MSVSAIFGTRLAAVSIPPSITGGTTGNRAVP-RIGYGGTRLVTECSSRPQKKATAHHKKS 86
MS +A FG ++ AV IP + ++ P G GG V ECSSRP KKATAHH K+
Sbjct: 1 MSTAAFFGAQIVAVRIPSAPASFAGARKSAPWNGGGGGGPAVIECSSRPTKKATAHHMKT 60
Query: 85 RPRKTQPWDIRRGPTVYXXXXXXXPEW 5
RP+KTQ WDIRR PTVY P+W
Sbjct: 61 RPKKTQAWDIRRKPTVYAPLPPLPPDW 87
>sp|P82411.1|PSRP6_SPIOL RecName: Full=50S ribosomal protein 6, chloroplastic; AltName:
Full=CL25; AltName: Full=Plastid-specific 50S ribosomal
protein 6; Short=PSRP-6; Flags: Precursor
gi|7578927|gb|AAF64189.1|AF245292_1 plastid-specific
ribosomal protein 6 precursor [Spinacia oleracea]
Length = 116
Score = 84.0 bits (206), Expect = 2e-14
Identities = 47/92 (51%), Positives = 55/92 (59%), Gaps = 5/92 (5%)
Frame = -2
Query: 262 MSVSAIFGTRLAAVSIPPSITGGTTGNRAV---PRIG--YGGTRLVTECSSRPQKKATAH 98
MSVSAIFG R+ V+IP + + R V P G GG + ECSSRPQKK TAH
Sbjct: 1 MSVSAIFGARV--VTIPSVLRTSSVDGRTVKLQPSTGGSCGGGVITIECSSRPQKKGTAH 58
Query: 97 HKKSRPRKTQPWDIRRGPTVYXXXXXXXPEWT 2
H K+RP+KT WDI+RGP VY EWT
Sbjct: 59 HMKTRPKKTARWDIKRGPAVYPPLPPLPAEWT 90
>ref|XP_002302374.1| plastid-specific ribosomal family protein [Populus trichocarpa]
gi|118486925|gb|ABK95296.1| unknown [Populus
trichocarpa] gi|222844100|gb|EEE81647.1|
plastid-specific ribosomal family protein [Populus
trichocarpa]
Length = 123
Score = 83.2 bits (204), Expect = 3e-14
Identities = 46/91 (50%), Positives = 56/91 (61%), Gaps = 4/91 (4%)
Frame = -2
Query: 262 MSVSAIFGTRLAAVSIP---PSITGGTTGNRAVP-RIGYGGTRLVTECSSRPQKKATAHH 95
MSVS+IFG+ P PS + VP G+G + ECSSRPQKKATAHH
Sbjct: 1 MSVSSIFGSPFLLAPKPSTTPSFKPVNGEFKTVPIGTGFGHGGMSIECSSRPQKKATAHH 60
Query: 94 KKSRPRKTQPWDIRRGPTVYXXXXXXXPEWT 2
+K+RPRK+QPWDI+R PTVY P+WT
Sbjct: 61 RKTRPRKSQPWDIKRKPTVYAPLPPLPPDWT 91
>ref|XP_004301446.1| PREDICTED: 50S ribosomal protein 6, chloroplastic-like [Fragaria
vesca subsp. vesca]
Length = 114
Score = 81.6 bits (200), Expect = 1e-13
Identities = 43/90 (47%), Positives = 55/90 (61%), Gaps = 4/90 (4%)
Frame = -2
Query: 262 MSVSAIF-GTRLAAVSIP---PSITGGTTGNRAVPRIGYGGTRLVTECSSRPQKKATAHH 95
MSVSA+ G +L ++ +P PS + P + G T LV ECSSRPQKKATAHH
Sbjct: 1 MSVSAVMLGPQLLSMPVPLRNPSAKASFGLTQMAPPLCGGSTGLVIECSSRPQKKATAHH 60
Query: 94 KKSRPRKTQPWDIRRGPTVYXXXXXXXPEW 5
+K+RPRKT WD++R PTVY +W
Sbjct: 61 RKTRPRKTAAWDVKRKPTVYAPLPPLPADW 90
>ref|XP_006433698.1| hypothetical protein CICLE_v10002778mg [Citrus clementina]
gi|557535820|gb|ESR46938.1| hypothetical protein
CICLE_v10002778mg [Citrus clementina]
Length = 149
Score = 80.5 bits (197), Expect = 2e-13
Identities = 43/95 (45%), Positives = 58/95 (61%)
Frame = -2
Query: 286 QRDLQKRKMSVSAIFGTRLAAVSIPPSITGGTTGNRAVPRIGYGGTRLVTECSSRPQKKA 107
Q + +R MS+S+ FG+++ V P+++ G +G LV E SSRPQKKA
Sbjct: 31 QSEGNRRGMSISSFFGSQIVVV---PNLSSKKLGVEGKCNVG-----LVIENSSRPQKKA 82
Query: 106 TAHHKKSRPRKTQPWDIRRGPTVYXXXXXXXPEWT 2
TAHH K+RPRKTQPWD+ R PTVY P+W+
Sbjct: 83 TAHHMKTRPRKTQPWDVNRKPTVYPPLPPLPPDWS 117
>ref|XP_006472361.1| PREDICTED: 50S ribosomal protein 6, chloroplastic-like [Citrus
sinensis]
Length = 111
Score = 79.3 bits (194), Expect = 5e-13
Identities = 42/87 (48%), Positives = 54/87 (62%)
Frame = -2
Query: 262 MSVSAIFGTRLAAVSIPPSITGGTTGNRAVPRIGYGGTRLVTECSSRPQKKATAHHKKSR 83
MS+S+ FG+++ V P+++ G +G LV E SSRPQKKATAHH K+R
Sbjct: 1 MSISSFFGSQIVVV---PNLSSKKLGMEEKCNVG-----LVIENSSRPQKKATAHHMKTR 52
Query: 82 PRKTQPWDIRRGPTVYXXXXXXXPEWT 2
PRKTQPWD+ R PTVY P+WT
Sbjct: 53 PRKTQPWDVNRKPTVYPPLPPLPPDWT 79
>ref|XP_002510018.1| 50S ribosomal protein CL25, chloroplast precursor, putative
[Ricinus communis] gi|223550719|gb|EEF52205.1| 50S
ribosomal protein CL25, chloroplast precursor, putative
[Ricinus communis]
Length = 126
Score = 79.3 bits (194), Expect = 5e-13
Identities = 43/91 (47%), Positives = 58/91 (63%), Gaps = 4/91 (4%)
Frame = -2
Query: 262 MSVSAIFGTRLAAVSIPPSITGGTTGNRAVPRI----GYGGTRLVTECSSRPQKKATAHH 95
MS+S+IFG+ + +S S+ ++ P+ G+ LV ECSSRP+KKATAHH
Sbjct: 1 MSISSIFGSPVVLLS-KASLKQLNVEVKSAPKTATGNGWYSGGLVIECSSRPKKKATAHH 59
Query: 94 KKSRPRKTQPWDIRRGPTVYXXXXXXXPEWT 2
K+RP+K+QPWDIRR PTVY P+WT
Sbjct: 60 MKTRPKKSQPWDIRRKPTVYPPLPPLPPDWT 90
>gb|EMJ00316.1| hypothetical protein PRUPE_ppa020853mg [Prunus persica]
Length = 74
Score = 78.6 bits (192), Expect = 8e-13
Identities = 33/41 (80%), Positives = 38/41 (92%)
Frame = -2
Query: 157 GGTRLVTECSSRPQKKATAHHKKSRPRKTQPWDIRRGPTVY 35
GGT L+ ECSSRPQKKATAHH+K+RPRKTQPWD++R PTVY
Sbjct: 28 GGTGLMIECSSRPQKKATAHHRKTRPRKTQPWDVKRKPTVY 68
>gb|EMJ16314.1| hypothetical protein PRUPE_ppa012953mg [Prunus persica]
Length = 148
Score = 78.2 bits (191), Expect = 1e-12
Identities = 34/52 (65%), Positives = 40/52 (76%)
Frame = -2
Query: 157 GGTRLVTECSSRPQKKATAHHKKSRPRKTQPWDIRRGPTVYXXXXXXXPEWT 2
GGT L+ E SSRPQKKATAHH+K+RPRKTQPWD++R PTVY +WT
Sbjct: 28 GGTGLMIEYSSRPQKKATAHHRKTRPRKTQPWDVKRKPTVYTLLPPLPADWT 79
>ref|XP_004979460.1| PREDICTED: 50S ribosomal protein 6, chloroplastic-like [Setaria
italica]
Length = 117
Score = 75.9 bits (185), Expect = 5e-12
Identities = 38/80 (47%), Positives = 48/80 (60%)
Frame = -2
Query: 241 GTRLAAVSIPPSITGGTTGNRAVPRIGYGGTRLVTECSSRPQKKATAHHKKSRPRKTQPW 62
GT + A +P + T G ++ +G G L ECSSRPQKK T HH K+RP+KTQPW
Sbjct: 10 GTAVPAAPVPARPSRPTVGFPSL--LGGGRAALAVECSSRPQKKGTKHHMKTRPKKTQPW 67
Query: 61 DIRRGPTVYXXXXXXXPEWT 2
DI+R PT Y P+WT
Sbjct: 68 DIKRRPTQYPPLPQLPPDWT 87
>gb|EMJ27548.1| hypothetical protein PRUPE_ppa022547mg [Prunus persica]
Length = 67
Score = 75.1 bits (183), Expect = 9e-12
Identities = 31/45 (68%), Positives = 36/45 (80%)
Frame = -2
Query: 136 ECSSRPQKKATAHHKKSRPRKTQPWDIRRGPTVYXXXXXXXPEWT 2
ECSSRPQKKATAHH+K+RPRKTQPWD++R PTVY +WT
Sbjct: 3 ECSSRPQKKATAHHRKTRPRKTQPWDVKRKPTVYTPLPPLPADWT 47
>gb|ESW09265.1| hypothetical protein PHAVU_009G113500g [Phaseolus vulgaris]
Length = 96
Score = 73.9 bits (180), Expect = 2e-11
Identities = 42/86 (48%), Positives = 52/86 (60%)
Frame = -2
Query: 259 SVSAIFGTRLAAVSIPPSITGGTTGNRAVPRIGYGGTRLVTECSSRPQKKATAHHKKSRP 80
S+S++FG AV PP G + + GG +V CSSRP+KKATAHH K+RP
Sbjct: 3 SLSSMFGC--GAVMAPPQSLG-------IGKRSDGGLTIV--CSSRPKKKATAHHMKTRP 51
Query: 79 RKTQPWDIRRGPTVYXXXXXXXPEWT 2
RK+QPWDI R PTVY P+WT
Sbjct: 52 RKSQPWDINRKPTVYDPMPPLPPDWT 77
>ref|XP_002456091.1| hypothetical protein SORBIDRAFT_03g030290 [Sorghum bicolor]
gi|241928066|gb|EES01211.1| hypothetical protein
SORBIDRAFT_03g030290 [Sorghum bicolor]
Length = 123
Score = 73.9 bits (180), Expect = 2e-11
Identities = 39/84 (46%), Positives = 48/84 (57%), Gaps = 7/84 (8%)
Frame = -2
Query: 232 LAAVSIPPSITGG-------TTGNRAVPRIGYGGTRLVTECSSRPQKKATAHHKKSRPRK 74
LA ++PPS + G ++P G G L ECSSRPQKK T HH K+RP+K
Sbjct: 8 LAGTAVPPSPAPARQHARHYSVGFPSLPN-GAGRAALAVECSSRPQKKGTKHHMKTRPKK 66
Query: 73 TQPWDIRRGPTVYXXXXXXXPEWT 2
TQPWDI+R PT Y P+WT
Sbjct: 67 TQPWDIKRRPTQYPPLPPLPPDWT 90