BLASTX nr result
ID: Catharanthus22_contig00005473
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus22_contig00005473
(4295 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002510514.1| 5'->3' exoribonuclease, putative [Ricinus co... 44 2e-07
gb|EXC00968.1| 5'-3' exoribonuclease 3 [Morus notabilis] 44 4e-07
ref|XP_004972700.1| PREDICTED: 5'-3' exoribonuclease 3-like isof... 45 4e-07
ref|XP_004972701.1| PREDICTED: 5'-3' exoribonuclease 3-like isof... 45 4e-07
ref|XP_004143781.1| PREDICTED: 5'-3' exoribonuclease 3-like [Cuc... 45 1e-06
gb|AFW61092.1| hypothetical protein ZEAMMB73_651968 [Zea mays] 43 1e-06
ref|XP_004967800.1| PREDICTED: 5'-3' exoribonuclease 3-like isof... 43 1e-06
gb|AFW61091.1| hypothetical protein ZEAMMB73_651968 [Zea mays] 43 1e-06
ref|XP_004967801.1| PREDICTED: 5'-3' exoribonuclease 3-like isof... 43 1e-06
ref|XP_002445167.1| hypothetical protein SORBIDRAFT_07g005160 [S... 43 1e-06
ref|XP_004967802.1| PREDICTED: 5'-3' exoribonuclease 3-like isof... 43 1e-06
ref|XP_004173047.1| PREDICTED: 5'-3' exoribonuclease 3-like, par... 45 1e-06
tpg|DAA54014.1| TPA: hypothetical protein ZEAMMB73_402768 [Zea m... 43 2e-06
ref|XP_002457601.1| hypothetical protein SORBIDRAFT_03g010040 [S... 43 2e-06
ref|XP_004291380.1| PREDICTED: 5'-3' exoribonuclease 3-like [Fra... 43 2e-06
tpg|DAA54013.1| TPA: hypothetical protein ZEAMMB73_402768 [Zea m... 43 2e-06
gb|EMJ26606.1| hypothetical protein PRUPE_ppa000605mg [Prunus pe... 45 2e-06
ref|XP_003564736.1| PREDICTED: 5'-3' exoribonuclease 3-like [Bra... 43 3e-06
gb|EAY76660.1| hypothetical protein OsI_04616 [Oryza sativa Indi... 42 7e-06
ref|NP_001044947.1| Os01g0872700 [Oryza sativa Japonica Group] g... 42 7e-06
>ref|XP_002510514.1| 5'->3' exoribonuclease, putative [Ricinus communis]
gi|223551215|gb|EEF52701.1| 5'->3' exoribonuclease,
putative [Ricinus communis]
Length = 1113
Score = 43.5 bits (101), Expect(2) = 2e-07
Identities = 18/22 (81%), Positives = 21/22 (95%)
Frame = +3
Query: 4116 PNLDRVEHFIQAMGSYDDKIFQ 4181
PNL +VEHFIQA+GSY+DKIFQ
Sbjct: 385 PNLSKVEHFIQAVGSYEDKIFQ 406
Score = 41.6 bits (96), Expect(2) = 2e-07
Identities = 18/24 (75%), Positives = 20/24 (83%)
Frame = +1
Query: 3949 INLLLAICKKEFKAMGGYMIDSCK 4020
INLLLA+ KKEF AMGGY+ D CK
Sbjct: 361 INLLLAVYKKEFTAMGGYLTDGCK 384
>gb|EXC00968.1| 5'-3' exoribonuclease 3 [Morus notabilis]
Length = 1082
Score = 43.9 bits (102), Expect(2) = 4e-07
Identities = 19/22 (86%), Positives = 21/22 (95%)
Frame = +3
Query: 4116 PNLDRVEHFIQAMGSYDDKIFQ 4181
PNLD VEHFIQA+GSY+DKIFQ
Sbjct: 381 PNLDCVEHFIQAVGSYEDKIFQ 402
Score = 40.4 bits (93), Expect(2) = 4e-07
Identities = 19/30 (63%), Positives = 23/30 (76%)
Frame = +1
Query: 3949 INLLLAICKKEFKAMGGYMIDSCKVSSWRP 4038
INLLLA+ KKEF+AMGGY+ D SW+P
Sbjct: 357 INLLLAVYKKEFRAMGGYLTD-----SWKP 381
>ref|XP_004972700.1| PREDICTED: 5'-3' exoribonuclease 3-like isoform X1 [Setaria italica]
Length = 1064
Score = 45.1 bits (105), Expect(2) = 4e-07
Identities = 19/22 (86%), Positives = 22/22 (100%)
Frame = +3
Query: 4116 PNLDRVEHFIQAMGSYDDKIFQ 4181
P+LDRVEHFIQA+GSY+DKIFQ
Sbjct: 384 PDLDRVEHFIQAVGSYEDKIFQ 405
Score = 39.3 bits (90), Expect(2) = 4e-07
Identities = 16/23 (69%), Positives = 20/23 (86%)
Frame = +1
Query: 3949 INLLLAICKKEFKAMGGYMIDSC 4017
INLL+A+ KKEF +MGGY+ DSC
Sbjct: 360 INLLMAVYKKEFPSMGGYLTDSC 382
>ref|XP_004972701.1| PREDICTED: 5'-3' exoribonuclease 3-like isoform X2 [Setaria italica]
Length = 1048
Score = 45.1 bits (105), Expect(2) = 4e-07
Identities = 19/22 (86%), Positives = 22/22 (100%)
Frame = +3
Query: 4116 PNLDRVEHFIQAMGSYDDKIFQ 4181
P+LDRVEHFIQA+GSY+DKIFQ
Sbjct: 384 PDLDRVEHFIQAVGSYEDKIFQ 405
Score = 39.3 bits (90), Expect(2) = 4e-07
Identities = 16/23 (69%), Positives = 20/23 (86%)
Frame = +1
Query: 3949 INLLLAICKKEFKAMGGYMIDSC 4017
INLL+A+ KKEF +MGGY+ DSC
Sbjct: 360 INLLMAVYKKEFPSMGGYLTDSC 382
>ref|XP_004143781.1| PREDICTED: 5'-3' exoribonuclease 3-like [Cucumis sativus]
Length = 1101
Score = 44.7 bits (104), Expect(2) = 1e-06
Identities = 19/22 (86%), Positives = 21/22 (95%)
Frame = +3
Query: 4116 PNLDRVEHFIQAMGSYDDKIFQ 4181
PNL RVEHFIQA+GSY+DKIFQ
Sbjct: 384 PNLQRVEHFIQAVGSYEDKIFQ 405
Score = 37.7 bits (86), Expect(2) = 1e-06
Identities = 16/24 (66%), Positives = 20/24 (83%)
Frame = +1
Query: 3949 INLLLAICKKEFKAMGGYMIDSCK 4020
INLLLA+ KKEF+A+GGY+ D K
Sbjct: 360 INLLLAVYKKEFRALGGYLTDGSK 383
>gb|AFW61092.1| hypothetical protein ZEAMMB73_651968 [Zea mays]
Length = 1079
Score = 43.1 bits (100), Expect(2) = 1e-06
Identities = 18/22 (81%), Positives = 22/22 (100%)
Frame = +3
Query: 4116 PNLDRVEHFIQAMGSYDDKIFQ 4181
P+L+RVEHFIQA+GSY+DKIFQ
Sbjct: 384 PDLNRVEHFIQAVGSYEDKIFQ 405
Score = 39.3 bits (90), Expect(2) = 1e-06
Identities = 16/23 (69%), Positives = 20/23 (86%)
Frame = +1
Query: 3949 INLLLAICKKEFKAMGGYMIDSC 4017
INLL+A+ KKEF +MGGY+ DSC
Sbjct: 360 INLLMAVYKKEFPSMGGYLTDSC 382
>ref|XP_004967800.1| PREDICTED: 5'-3' exoribonuclease 3-like isoform X1 [Setaria italica]
Length = 1074
Score = 43.1 bits (100), Expect(2) = 1e-06
Identities = 18/22 (81%), Positives = 22/22 (100%)
Frame = +3
Query: 4116 PNLDRVEHFIQAMGSYDDKIFQ 4181
P+L+RVEHFIQA+GSY+DKIFQ
Sbjct: 384 PDLNRVEHFIQAVGSYEDKIFQ 405
Score = 39.3 bits (90), Expect(2) = 1e-06
Identities = 16/23 (69%), Positives = 20/23 (86%)
Frame = +1
Query: 3949 INLLLAICKKEFKAMGGYMIDSC 4017
INLL+A+ KKEF +MGGY+ DSC
Sbjct: 360 INLLMAVYKKEFPSMGGYLTDSC 382
>gb|AFW61091.1| hypothetical protein ZEAMMB73_651968 [Zea mays]
Length = 1058
Score = 43.1 bits (100), Expect(2) = 1e-06
Identities = 18/22 (81%), Positives = 22/22 (100%)
Frame = +3
Query: 4116 PNLDRVEHFIQAMGSYDDKIFQ 4181
P+L+RVEHFIQA+GSY+DKIFQ
Sbjct: 384 PDLNRVEHFIQAVGSYEDKIFQ 405
Score = 39.3 bits (90), Expect(2) = 1e-06
Identities = 16/23 (69%), Positives = 20/23 (86%)
Frame = +1
Query: 3949 INLLLAICKKEFKAMGGYMIDSC 4017
INLL+A+ KKEF +MGGY+ DSC
Sbjct: 360 INLLMAVYKKEFPSMGGYLTDSC 382
>ref|XP_004967801.1| PREDICTED: 5'-3' exoribonuclease 3-like isoform X2 [Setaria italica]
Length = 994
Score = 43.1 bits (100), Expect(2) = 1e-06
Identities = 18/22 (81%), Positives = 22/22 (100%)
Frame = +3
Query: 4116 PNLDRVEHFIQAMGSYDDKIFQ 4181
P+L+RVEHFIQA+GSY+DKIFQ
Sbjct: 304 PDLNRVEHFIQAVGSYEDKIFQ 325
Score = 39.3 bits (90), Expect(2) = 1e-06
Identities = 16/23 (69%), Positives = 20/23 (86%)
Frame = +1
Query: 3949 INLLLAICKKEFKAMGGYMIDSC 4017
INLL+A+ KKEF +MGGY+ DSC
Sbjct: 280 INLLMAVYKKEFPSMGGYLTDSC 302
>ref|XP_002445167.1| hypothetical protein SORBIDRAFT_07g005160 [Sorghum bicolor]
gi|241941517|gb|EES14662.1| hypothetical protein
SORBIDRAFT_07g005160 [Sorghum bicolor]
Length = 945
Score = 43.1 bits (100), Expect(2) = 1e-06
Identities = 18/22 (81%), Positives = 22/22 (100%)
Frame = +3
Query: 4116 PNLDRVEHFIQAMGSYDDKIFQ 4181
P+L+RVEHFIQA+GSY+DKIFQ
Sbjct: 384 PDLNRVEHFIQAVGSYEDKIFQ 405
Score = 39.3 bits (90), Expect(2) = 1e-06
Identities = 16/23 (69%), Positives = 20/23 (86%)
Frame = +1
Query: 3949 INLLLAICKKEFKAMGGYMIDSC 4017
INLL+A+ KKEF +MGGY+ DSC
Sbjct: 360 INLLMAVYKKEFPSMGGYLTDSC 382
>ref|XP_004967802.1| PREDICTED: 5'-3' exoribonuclease 3-like isoform X3 [Setaria italica]
Length = 866
Score = 43.1 bits (100), Expect(2) = 1e-06
Identities = 18/22 (81%), Positives = 22/22 (100%)
Frame = +3
Query: 4116 PNLDRVEHFIQAMGSYDDKIFQ 4181
P+L+RVEHFIQA+GSY+DKIFQ
Sbjct: 176 PDLNRVEHFIQAVGSYEDKIFQ 197
Score = 39.3 bits (90), Expect(2) = 1e-06
Identities = 16/23 (69%), Positives = 20/23 (86%)
Frame = +1
Query: 3949 INLLLAICKKEFKAMGGYMIDSC 4017
INLL+A+ KKEF +MGGY+ DSC
Sbjct: 152 INLLMAVYKKEFPSMGGYLTDSC 174
>ref|XP_004173047.1| PREDICTED: 5'-3' exoribonuclease 3-like, partial [Cucumis sativus]
Length = 249
Score = 44.7 bits (104), Expect(2) = 1e-06
Identities = 19/22 (86%), Positives = 21/22 (95%)
Frame = +3
Query: 4116 PNLDRVEHFIQAMGSYDDKIFQ 4181
PNL RVEHFIQA+GSY+DKIFQ
Sbjct: 27 PNLQRVEHFIQAVGSYEDKIFQ 48
Score = 37.7 bits (86), Expect(2) = 1e-06
Identities = 16/24 (66%), Positives = 20/24 (83%)
Frame = +1
Query: 3949 INLLLAICKKEFKAMGGYMIDSCK 4020
INLLLA+ KKEF+A+GGY+ D K
Sbjct: 3 INLLLAVYKKEFRALGGYLTDGSK 26
>tpg|DAA54014.1| TPA: hypothetical protein ZEAMMB73_402768 [Zea mays]
Length = 1066
Score = 42.7 bits (99), Expect(2) = 2e-06
Identities = 18/22 (81%), Positives = 21/22 (95%)
Frame = +3
Query: 4116 PNLDRVEHFIQAMGSYDDKIFQ 4181
P+L RVEHFIQA+GSY+DKIFQ
Sbjct: 384 PDLSRVEHFIQAVGSYEDKIFQ 405
Score = 39.3 bits (90), Expect(2) = 2e-06
Identities = 16/23 (69%), Positives = 20/23 (86%)
Frame = +1
Query: 3949 INLLLAICKKEFKAMGGYMIDSC 4017
INLL+A+ KKEF +MGGY+ DSC
Sbjct: 360 INLLMAVYKKEFPSMGGYLTDSC 382
>ref|XP_002457601.1| hypothetical protein SORBIDRAFT_03g010040 [Sorghum bicolor]
gi|241929576|gb|EES02721.1| hypothetical protein
SORBIDRAFT_03g010040 [Sorghum bicolor]
Length = 1066
Score = 42.7 bits (99), Expect(2) = 2e-06
Identities = 18/22 (81%), Positives = 21/22 (95%)
Frame = +3
Query: 4116 PNLDRVEHFIQAMGSYDDKIFQ 4181
P+L RVEHFIQA+GSY+DKIFQ
Sbjct: 384 PDLSRVEHFIQAVGSYEDKIFQ 405
Score = 39.3 bits (90), Expect(2) = 2e-06
Identities = 16/23 (69%), Positives = 20/23 (86%)
Frame = +1
Query: 3949 INLLLAICKKEFKAMGGYMIDSC 4017
INLL+A+ KKEF +MGGY+ DSC
Sbjct: 360 INLLMAVYKKEFPSMGGYLTDSC 382
>ref|XP_004291380.1| PREDICTED: 5'-3' exoribonuclease 3-like [Fragaria vesca subsp. vesca]
Length = 1052
Score = 42.7 bits (99), Expect(2) = 2e-06
Identities = 18/22 (81%), Positives = 20/22 (90%)
Frame = +3
Query: 4116 PNLDRVEHFIQAMGSYDDKIFQ 4181
PNL RVEHFIQA+G Y+DKIFQ
Sbjct: 384 PNLSRVEHFIQAVGCYEDKIFQ 405
Score = 39.3 bits (90), Expect(2) = 2e-06
Identities = 17/24 (70%), Positives = 21/24 (87%)
Frame = +1
Query: 3949 INLLLAICKKEFKAMGGYMIDSCK 4020
INLLLA+ KKEF+AMGGY+ D+ K
Sbjct: 360 INLLLAVYKKEFRAMGGYLTDASK 383
>tpg|DAA54013.1| TPA: hypothetical protein ZEAMMB73_402768 [Zea mays]
Length = 591
Score = 42.7 bits (99), Expect(2) = 2e-06
Identities = 18/22 (81%), Positives = 21/22 (95%)
Frame = +3
Query: 4116 PNLDRVEHFIQAMGSYDDKIFQ 4181
P+L RVEHFIQA+GSY+DKIFQ
Sbjct: 384 PDLSRVEHFIQAVGSYEDKIFQ 405
Score = 39.3 bits (90), Expect(2) = 2e-06
Identities = 16/23 (69%), Positives = 20/23 (86%)
Frame = +1
Query: 3949 INLLLAICKKEFKAMGGYMIDSC 4017
INLL+A+ KKEF +MGGY+ DSC
Sbjct: 360 INLLMAVYKKEFPSMGGYLTDSC 382
>gb|EMJ26606.1| hypothetical protein PRUPE_ppa000605mg [Prunus persica]
Length = 1076
Score = 44.7 bits (104), Expect(2) = 2e-06
Identities = 19/22 (86%), Positives = 21/22 (95%)
Frame = +3
Query: 4116 PNLDRVEHFIQAMGSYDDKIFQ 4181
PNL RVEHFIQA+GSY+DKIFQ
Sbjct: 385 PNLSRVEHFIQAVGSYEDKIFQ 406
Score = 37.0 bits (84), Expect(2) = 2e-06
Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 10/78 (12%)
Frame = +1
Query: 3817 EYLQLTVIIP----------LYY*FVFHVSFHISHE*HYILLP*LDCALWTKEVINLLLA 3966
EYL+L + IP + F+F + F + ++ LP + + INLL A
Sbjct: 312 EYLELEMQIPNSPIEIDSERIVDDFIF-ICFFVGND----FLPHMPTLEIREGAINLLFA 366
Query: 3967 ICKKEFKAMGGYMIDSCK 4020
+ KKEF+A+GGY+ D K
Sbjct: 367 VYKKEFRALGGYLTDGSK 384
>ref|XP_003564736.1| PREDICTED: 5'-3' exoribonuclease 3-like [Brachypodium distachyon]
Length = 1061
Score = 43.1 bits (100), Expect(2) = 3e-06
Identities = 18/22 (81%), Positives = 22/22 (100%)
Frame = +3
Query: 4116 PNLDRVEHFIQAMGSYDDKIFQ 4181
P+L+RVEHFIQA+GSY+DKIFQ
Sbjct: 384 PDLNRVEHFIQAVGSYEDKIFQ 405
Score = 38.1 bits (87), Expect(2) = 3e-06
Identities = 15/23 (65%), Positives = 20/23 (86%)
Frame = +1
Query: 3949 INLLLAICKKEFKAMGGYMIDSC 4017
INLL+A+ KKEF +MGGY+ D+C
Sbjct: 360 INLLMAVYKKEFPSMGGYLTDAC 382
>gb|EAY76660.1| hypothetical protein OsI_04616 [Oryza sativa Indica Group]
Length = 1068
Score = 42.0 bits (97), Expect(2) = 7e-06
Identities = 17/22 (77%), Positives = 22/22 (100%)
Frame = +3
Query: 4116 PNLDRVEHFIQAMGSYDDKIFQ 4181
P+L++VEHFIQA+GSY+DKIFQ
Sbjct: 384 PDLNKVEHFIQAVGSYEDKIFQ 405
Score = 38.1 bits (87), Expect(2) = 7e-06
Identities = 15/23 (65%), Positives = 20/23 (86%)
Frame = +1
Query: 3949 INLLLAICKKEFKAMGGYMIDSC 4017
INLL+A+ KKEF +MGGY+ D+C
Sbjct: 360 INLLMAVYKKEFPSMGGYLTDAC 382
>ref|NP_001044947.1| Os01g0872700 [Oryza sativa Japonica Group]
gi|56785082|dbj|BAD82721.1| putative 5'-3'
exoribonuclease (XRN3) [Oryza sativa Japonica Group]
gi|113534478|dbj|BAF06861.1| Os01g0872700 [Oryza sativa
Japonica Group] gi|215713440|dbj|BAG94577.1| unnamed
protein product [Oryza sativa Japonica Group]
Length = 1068
Score = 42.0 bits (97), Expect(2) = 7e-06
Identities = 17/22 (77%), Positives = 22/22 (100%)
Frame = +3
Query: 4116 PNLDRVEHFIQAMGSYDDKIFQ 4181
P+L++VEHFIQA+GSY+DKIFQ
Sbjct: 384 PDLNKVEHFIQAVGSYEDKIFQ 405
Score = 38.1 bits (87), Expect(2) = 7e-06
Identities = 15/23 (65%), Positives = 20/23 (86%)
Frame = +1
Query: 3949 INLLLAICKKEFKAMGGYMIDSC 4017
INLL+A+ KKEF +MGGY+ D+C
Sbjct: 360 INLLMAVYKKEFPSMGGYLTDAC 382