BLASTX nr result
ID: Catharanthus22_contig00005413
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus22_contig00005413
(203 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EOY01675.1| RNA helicase family protein isoform 2, partial [T... 86 5e-15
gb|EOY01674.1| RNA helicase family protein isoform 1 [Theobroma ... 86 5e-15
ref|XP_006306851.1| hypothetical protein CARUB_v10008395mg [Caps... 75 7e-12
ref|XP_006306850.1| hypothetical protein CARUB_v10008395mg [Caps... 75 7e-12
gb|AAF98584.1|AC013427_27 Strong similarity to RNA helicase (HRH... 74 2e-11
ref|NP_173961.3| RNA helicase family protein [Arabidopsis thalia... 74 2e-11
ref|XP_006415916.1| hypothetical protein EUTSA_v10006970mg [Eutr... 74 2e-11
dbj|BAJ93529.1| predicted protein [Hordeum vulgare subsp. vulgare] 74 3e-11
ref|XP_006656727.1| PREDICTED: ATP-dependent RNA helicase DHX8-l... 73 3e-11
gb|EMT25274.1| ATP-dependent RNA helicase DHX8 [Aegilops tauschii] 73 3e-11
gb|EMS56143.1| ATP-dependent RNA helicase DHX8 [Triticum urartu] 73 3e-11
dbj|BAD35264.1| putative RNA helicase [Oryza sativa Japonica Gro... 72 6e-11
ref|NP_001057036.1| Os06g0192500 [Oryza sativa Japonica Group] g... 72 6e-11
gb|EAZ36110.1| hypothetical protein OsJ_20422 [Oryza sativa Japo... 72 6e-11
gb|EAY99985.1| hypothetical protein OsI_21989 [Oryza sativa Indi... 72 6e-11
ref|XP_006484223.1| PREDICTED: ATP-dependent RNA helicase DHX8-l... 71 1e-10
ref|XP_006437910.1| hypothetical protein CICLE_v10030826mg [Citr... 71 1e-10
gb|AFW84081.1| hypothetical protein ZEAMMB73_338971 [Zea mays] 71 2e-10
ref|NP_001147775.1| ATP-dependent RNA helicase DHX8 [Zea mays] g... 71 2e-10
ref|XP_006354359.1| PREDICTED: ATP-dependent RNA helicase DHX8-l... 69 8e-10
>gb|EOY01675.1| RNA helicase family protein isoform 2, partial [Theobroma cacao]
Length = 635
Score = 85.9 bits (211), Expect = 5e-15
Identities = 42/61 (68%), Positives = 50/61 (81%), Gaps = 4/61 (6%)
Frame = -3
Query: 171 CISLLKPCHGRKLPPL*LIIMCATLDARVFS----GAKAVHVQGRQYPVDILCSLQPETD 4
CIS+LK C GRKLPPL LIIM A+LDARVFS GA+AVH+QGRQ+PVDI ++ P+TD
Sbjct: 196 CISVLKQCEGRKLPPLKLIIMSASLDARVFSEYFGGARAVHIQGRQFPVDIFYTVNPQTD 255
Query: 3 Y 1
Y
Sbjct: 256 Y 256
>gb|EOY01674.1| RNA helicase family protein isoform 1 [Theobroma cacao]
Length = 764
Score = 85.9 bits (211), Expect = 5e-15
Identities = 42/61 (68%), Positives = 50/61 (81%), Gaps = 4/61 (6%)
Frame = -3
Query: 171 CISLLKPCHGRKLPPL*LIIMCATLDARVFS----GAKAVHVQGRQYPVDILCSLQPETD 4
CIS+LK C GRKLPPL LIIM A+LDARVFS GA+AVH+QGRQ+PVDI ++ P+TD
Sbjct: 261 CISVLKQCEGRKLPPLKLIIMSASLDARVFSEYFGGARAVHIQGRQFPVDIFYTVNPQTD 320
Query: 3 Y 1
Y
Sbjct: 321 Y 321
>ref|XP_006306851.1| hypothetical protein CARUB_v10008395mg [Capsella rubella]
gi|482575562|gb|EOA39749.1| hypothetical protein
CARUB_v10008395mg [Capsella rubella]
Length = 742
Score = 75.5 bits (184), Expect = 7e-12
Identities = 39/54 (72%), Positives = 44/54 (81%), Gaps = 4/54 (7%)
Frame = -3
Query: 150 CHGRKLPPL*LIIMCATLDARVFS----GAKAVHVQGRQYPVDILCSLQPETDY 1
C GRKL PL LIIM A+LDARVFS GAKAVHVQGRQ+PVDIL ++ PE+DY
Sbjct: 221 CQGRKLSPLKLIIMSASLDARVFSEYFGGAKAVHVQGRQFPVDILYTVHPESDY 274
>ref|XP_006306850.1| hypothetical protein CARUB_v10008395mg [Capsella rubella]
gi|482575561|gb|EOA39748.1| hypothetical protein
CARUB_v10008395mg [Capsella rubella]
Length = 717
Score = 75.5 bits (184), Expect = 7e-12
Identities = 39/54 (72%), Positives = 44/54 (81%), Gaps = 4/54 (7%)
Frame = -3
Query: 150 CHGRKLPPL*LIIMCATLDARVFS----GAKAVHVQGRQYPVDILCSLQPETDY 1
C GRKL PL LIIM A+LDARVFS GAKAVHVQGRQ+PVDIL ++ PE+DY
Sbjct: 221 CQGRKLSPLKLIIMSASLDARVFSEYFGGAKAVHVQGRQFPVDILYTVHPESDY 274
>gb|AAF98584.1|AC013427_27 Strong similarity to RNA helicase (HRH1) from Homo sapiens
gb|D50487 and contains a Helicases conserved C-terminal
PF|00271 domain. EST gb|AV567077 comes from this gene
[Arabidopsis thaliana]
Length = 726
Score = 74.3 bits (181), Expect = 2e-11
Identities = 40/58 (68%), Positives = 46/58 (79%), Gaps = 4/58 (6%)
Frame = -3
Query: 162 LLKPCHGRKLPPL*LIIMCATLDARVFS----GAKAVHVQGRQYPVDILCSLQPETDY 1
+LK GRKL PL LIIM A+LDARVFS GAKAVHVQGRQ+PVDIL ++ PE+DY
Sbjct: 226 VLKGYQGRKLSPLKLIIMSASLDARVFSEYFGGAKAVHVQGRQFPVDILYTVHPESDY 283
>ref|NP_173961.3| RNA helicase family protein [Arabidopsis thaliana]
gi|332192562|gb|AEE30683.1| RNA helicase family protein
[Arabidopsis thaliana]
Length = 717
Score = 74.3 bits (181), Expect = 2e-11
Identities = 40/58 (68%), Positives = 46/58 (79%), Gaps = 4/58 (6%)
Frame = -3
Query: 162 LLKPCHGRKLPPL*LIIMCATLDARVFS----GAKAVHVQGRQYPVDILCSLQPETDY 1
+LK GRKL PL LIIM A+LDARVFS GAKAVHVQGRQ+PVDIL ++ PE+DY
Sbjct: 217 VLKGYQGRKLSPLKLIIMSASLDARVFSEYFGGAKAVHVQGRQFPVDILYTVHPESDY 274
>ref|XP_006415916.1| hypothetical protein EUTSA_v10006970mg [Eutrema salsugineum]
gi|557093687|gb|ESQ34269.1| hypothetical protein
EUTSA_v10006970mg [Eutrema salsugineum]
Length = 693
Score = 73.9 bits (180), Expect = 2e-11
Identities = 38/58 (65%), Positives = 45/58 (77%), Gaps = 4/58 (6%)
Frame = -3
Query: 162 LLKPCHGRKLPPL*LIIMCATLDARVFS----GAKAVHVQGRQYPVDILCSLQPETDY 1
+L+ C GRK+ PL LIIM A+LDARVFS GAKAVHVQGRQ+PVDI + PE+DY
Sbjct: 193 VLRGCQGRKVSPLKLIIMSASLDARVFSEYFGGAKAVHVQGRQFPVDIFYTAHPESDY 250
>dbj|BAJ93529.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 697
Score = 73.6 bits (179), Expect = 3e-11
Identities = 39/62 (62%), Positives = 45/62 (72%), Gaps = 4/62 (6%)
Frame = -3
Query: 174 SCISLLKPCHGRKLPPL*LIIMCATLDARVFS----GAKAVHVQGRQYPVDILCSLQPET 7
S +S LK C G K PL LIIM A+LDA+ FS GAKAVH+QGRQYPVD L + QPE+
Sbjct: 192 SQVSTLKACQGIKTAPLKLIIMSASLDAKCFSDYFGGAKAVHIQGRQYPVDTLYTYQPES 251
Query: 6 DY 1
DY
Sbjct: 252 DY 253
>ref|XP_006656727.1| PREDICTED: ATP-dependent RNA helicase DHX8-like [Oryza brachyantha]
Length = 723
Score = 73.2 bits (178), Expect = 3e-11
Identities = 37/56 (66%), Positives = 43/56 (76%), Gaps = 4/56 (7%)
Frame = -3
Query: 156 KPCHGRKLPPL*LIIMCATLDARVFS----GAKAVHVQGRQYPVDILCSLQPETDY 1
K C G K+ PL LIIM A+LDA+ FS GAKAVH+QGRQYPVDIL + QPE+DY
Sbjct: 224 KACQGTKIDPLKLIIMSASLDAKCFSDYFGGAKAVHIQGRQYPVDILYTYQPESDY 279
>gb|EMT25274.1| ATP-dependent RNA helicase DHX8 [Aegilops tauschii]
Length = 732
Score = 73.2 bits (178), Expect = 3e-11
Identities = 38/59 (64%), Positives = 44/59 (74%), Gaps = 4/59 (6%)
Frame = -3
Query: 165 SLLKPCHGRKLPPL*LIIMCATLDARVFS----GAKAVHVQGRQYPVDILCSLQPETDY 1
S LK C G K+ PL LIIM A+LDA+ FS GAKAVH+QGRQYPVD L + QPE+DY
Sbjct: 230 STLKACQGIKIAPLKLIIMSASLDAKCFSDYFGGAKAVHIQGRQYPVDTLYTYQPESDY 288
>gb|EMS56143.1| ATP-dependent RNA helicase DHX8 [Triticum urartu]
Length = 696
Score = 73.2 bits (178), Expect = 3e-11
Identities = 38/59 (64%), Positives = 44/59 (74%), Gaps = 4/59 (6%)
Frame = -3
Query: 165 SLLKPCHGRKLPPL*LIIMCATLDARVFS----GAKAVHVQGRQYPVDILCSLQPETDY 1
S LK C G K+ PL LIIM A+LDA+ FS GAKAVH+QGRQYPVD L + QPE+DY
Sbjct: 194 STLKACQGIKIAPLKLIIMSASLDAKCFSDYFGGAKAVHIQGRQYPVDTLYTYQPESDY 252
>dbj|BAD35264.1| putative RNA helicase [Oryza sativa Japonica Group]
gi|51091123|dbj|BAD35820.1| putative RNA helicase [Oryza
sativa Japonica Group]
Length = 698
Score = 72.4 bits (176), Expect = 6e-11
Identities = 37/57 (64%), Positives = 43/57 (75%), Gaps = 4/57 (7%)
Frame = -3
Query: 159 LKPCHGRKLPPL*LIIMCATLDARVFS----GAKAVHVQGRQYPVDILCSLQPETDY 1
LK C G K+ PL LIIM A+LDA+ FS AKAVH+QGRQYPVDIL + QPE+DY
Sbjct: 198 LKACQGTKIDPLKLIIMSASLDAKCFSDYFGSAKAVHIQGRQYPVDILYTYQPESDY 254
>ref|NP_001057036.1| Os06g0192500 [Oryza sativa Japonica Group]
gi|51090787|dbj|BAD35265.1| RNA helicase-like [Oryza
sativa Japonica Group] gi|51091124|dbj|BAD35821.1| RNA
helicase-like [Oryza sativa Japonica Group]
gi|113595076|dbj|BAF18950.1| Os06g0192500 [Oryza sativa
Japonica Group]
Length = 386
Score = 72.4 bits (176), Expect = 6e-11
Identities = 37/57 (64%), Positives = 43/57 (75%), Gaps = 4/57 (7%)
Frame = -3
Query: 159 LKPCHGRKLPPL*LIIMCATLDARVFS----GAKAVHVQGRQYPVDILCSLQPETDY 1
LK C G K+ PL LIIM A+LDA+ FS AKAVH+QGRQYPVDIL + QPE+DY
Sbjct: 198 LKACQGTKIDPLKLIIMSASLDAKCFSDYFGSAKAVHIQGRQYPVDILYTYQPESDY 254
>gb|EAZ36110.1| hypothetical protein OsJ_20422 [Oryza sativa Japonica Group]
Length = 518
Score = 72.4 bits (176), Expect = 6e-11
Identities = 37/57 (64%), Positives = 43/57 (75%), Gaps = 4/57 (7%)
Frame = -3
Query: 159 LKPCHGRKLPPL*LIIMCATLDARVFS----GAKAVHVQGRQYPVDILCSLQPETDY 1
LK C G K+ PL LIIM A+LDA+ FS AKAVH+QGRQYPVDIL + QPE+DY
Sbjct: 354 LKACQGTKIDPLKLIIMSASLDAKCFSDYFGSAKAVHIQGRQYPVDILYTYQPESDY 410
>gb|EAY99985.1| hypothetical protein OsI_21989 [Oryza sativa Indica Group]
Length = 698
Score = 72.4 bits (176), Expect = 6e-11
Identities = 37/57 (64%), Positives = 43/57 (75%), Gaps = 4/57 (7%)
Frame = -3
Query: 159 LKPCHGRKLPPL*LIIMCATLDARVFS----GAKAVHVQGRQYPVDILCSLQPETDY 1
LK C G K+ PL LIIM A+LDA+ FS AKAVH+QGRQYPVDIL + QPE+DY
Sbjct: 198 LKACQGTKIDPLKLIIMSASLDAKCFSDYFGSAKAVHIQGRQYPVDILYTYQPESDY 254
>ref|XP_006484223.1| PREDICTED: ATP-dependent RNA helicase DHX8-like [Citrus sinensis]
Length = 717
Score = 71.2 bits (173), Expect = 1e-10
Identities = 39/60 (65%), Positives = 44/60 (73%), Gaps = 4/60 (6%)
Frame = -3
Query: 168 ISLLKPCHGRKLPPL*LIIMCATLDARVFSG----AKAVHVQGRQYPVDILCSLQPETDY 1
I+ LK C GRK PL LIIM A+LDAR FS AKAVHVQGRQ+PV+IL +L PE DY
Sbjct: 215 INTLKQCQGRKFAPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEILYTLYPEPDY 274
>ref|XP_006437910.1| hypothetical protein CICLE_v10030826mg [Citrus clementina]
gi|557540106|gb|ESR51150.1| hypothetical protein
CICLE_v10030826mg [Citrus clementina]
Length = 717
Score = 71.2 bits (173), Expect = 1e-10
Identities = 39/60 (65%), Positives = 44/60 (73%), Gaps = 4/60 (6%)
Frame = -3
Query: 168 ISLLKPCHGRKLPPL*LIIMCATLDARVFSG----AKAVHVQGRQYPVDILCSLQPETDY 1
I+ LK C GRK PL LIIM A+LDAR FS AKAVHVQGRQ+PV+IL +L PE DY
Sbjct: 215 INTLKQCQGRKFAPLKLIIMSASLDARGFSEYFGCAKAVHVQGRQFPVEILYTLYPEPDY 274
>gb|AFW84081.1| hypothetical protein ZEAMMB73_338971 [Zea mays]
Length = 384
Score = 70.9 bits (172), Expect = 2e-10
Identities = 36/57 (63%), Positives = 43/57 (75%), Gaps = 4/57 (7%)
Frame = -3
Query: 159 LKPCHGRKLPPL*LIIMCATLDARVFS----GAKAVHVQGRQYPVDILCSLQPETDY 1
+K C G + PL LIIM A+LDA+ FS GAKAVH+QGRQYPVDIL + QPE+DY
Sbjct: 192 IKECQGIRCAPLKLIIMSASLDAKCFSDYFGGAKAVHIQGRQYPVDILYTYQPESDY 248
>ref|NP_001147775.1| ATP-dependent RNA helicase DHX8 [Zea mays]
gi|195613710|gb|ACG28685.1| ATP-dependent RNA helicase
DHX8 [Zea mays] gi|413951431|gb|AFW84080.1|
ATP-dependent RNA helicase DHX8 [Zea mays]
Length = 692
Score = 70.9 bits (172), Expect = 2e-10
Identities = 36/57 (63%), Positives = 43/57 (75%), Gaps = 4/57 (7%)
Frame = -3
Query: 159 LKPCHGRKLPPL*LIIMCATLDARVFS----GAKAVHVQGRQYPVDILCSLQPETDY 1
+K C G + PL LIIM A+LDA+ FS GAKAVH+QGRQYPVDIL + QPE+DY
Sbjct: 192 IKECQGIRCAPLKLIIMSASLDAKCFSDYFGGAKAVHIQGRQYPVDILYTYQPESDY 248
>ref|XP_006354359.1| PREDICTED: ATP-dependent RNA helicase DHX8-like [Solanum tuberosum]
Length = 711
Score = 68.6 bits (166), Expect = 8e-10
Identities = 37/57 (64%), Positives = 43/57 (75%), Gaps = 4/57 (7%)
Frame = -3
Query: 162 LLKPCHGRKLPPL*LIIMCATLDARVFS----GAKAVHVQGRQYPVDILCSLQPETD 4
+LK C +K PL LIIM A+LDARVFS GAKAVHVQGRQ+PVDI + +PETD
Sbjct: 212 ILKSCQVKKYNPLKLIIMSASLDARVFSEYFGGAKAVHVQGRQFPVDIFYTHKPETD 268