BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Catharanthus22_contig00005350
         (2740 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004232527.1| PREDICTED: DNA-directed RNA polymerase II su...  1434   0.0  
ref|XP_006340787.1| PREDICTED: DNA-directed RNA polymerase II su...  1433   0.0  
gb|EPS67076.1| hypothetical protein M569_07699, partial [Genlise...  1425   0.0  
ref|XP_002285900.1| PREDICTED: DNA-directed RNA polymerase II su...  1409   0.0  
ref|XP_006659128.1| PREDICTED: DNA-directed RNA polymerase II su...  1397   0.0  
gb|EMJ04257.1| hypothetical protein PRUPE_ppa000093mg [Prunus pe...  1397   0.0  
gb|EXC35292.1| DNA-directed RNA polymerase II subunit rpb1 [Moru...  1397   0.0  
gb|EEE68068.1| hypothetical protein OsJ_26081 [Oryza sativa Japo...  1397   0.0  
ref|XP_004972810.1| PREDICTED: DNA-directed RNA polymerase II su...  1390   0.0  
ref|XP_004972809.1| PREDICTED: DNA-directed RNA polymerase II su...  1390   0.0  
ref|XP_004169177.1| PREDICTED: DNA-directed RNA polymerase II su...  1388   0.0  
ref|XP_004146161.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...  1388   0.0  
ref|XP_004287766.1| PREDICTED: DNA-directed RNA polymerase II su...  1387   0.0  
ref|XP_002443877.1| hypothetical protein SORBIDRAFT_07g003680 [S...  1387   0.0  
gb|AFW57310.1| RNA polymerase II large subunit family protein [Z...  1385   0.0  
ref|XP_004512182.1| PREDICTED: DNA-directed RNA polymerase II su...  1380   0.0  
gb|ESW29856.1| hypothetical protein PHAVU_002G104500g [Phaseolus...  1379   0.0  
gb|EOX90745.1| DNA-directed RNA polymerase II subunit RPB1 isofo...  1379   0.0  
gb|EOX90744.1| DNA-directed RNA polymerase II subunit RPB1 isofo...  1379   0.0  
gb|EOX90741.1| DNA-directed RNA polymerase II subunit RPB1 isofo...  1379   0.0  

>ref|XP_004232527.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Solanum
            lycopersicum]
          Length = 1846

 Score = 1434 bits (3711), Expect = 0.0
 Identities = 711/784 (90%), Positives = 750/784 (95%)
 Frame = -1

Query: 2740 QKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFVDRTLPHFLKEDLG 2561
            +KSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIP+GF+DRTLPHF K+D G
Sbjct: 752  EKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYG 811

Query: 2560 PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 2381
            PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD
Sbjct: 812  PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 871

Query: 2380 GTVRNSLGDVIQFLYGEDGMDAVWIESQKLEALKVKKSEFDDMFKYEIDDPTWQPDYMHP 2201
            GTVRNSLGDVIQFLYGEDGMD+VWIE+QKL++LK KK  FDDM+ YEIDDP W P YM P
Sbjct: 872  GTVRNSLGDVIQFLYGEDGMDSVWIETQKLDSLKAKKGTFDDMYAYEIDDPNWNPSYMLP 931

Query: 2200 EAVEDLKTIREIRSVFDAEVQKLEADRLLLGSEIATTGDNTWPLPVNIKRLISNAQKTFK 2021
            EAVEDLK IREIRSVFDAEVQKLEADR  LG+EIA TGDN+WPLPVNI+RL+ NAQKTFK
Sbjct: 932  EAVEDLKGIREIRSVFDAEVQKLEADRHQLGTEIAVTGDNSWPLPVNIQRLVLNAQKTFK 991

Query: 2020 IDFRRPSDMHPLQIVEFVDKLQERLKVVHGDDYLSKEAQKNATLFFNILLRSSLASKRVL 1841
            IDFRRPSDMHP++IVE VDKLQERLKVV GDDYLS EAQKNATLFFNILLRS+LASKRVL
Sbjct: 992  IDFRRPSDMHPMEIVEAVDKLQERLKVVPGDDYLSMEAQKNATLFFNILLRSALASKRVL 1051

Query: 1840 KDYRLTQEAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK 1661
            K+YRL++EAFEWV+GEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK
Sbjct: 1052 KEYRLSREAFEWVVGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK 1111

Query: 1660 NVTLGVPRLREIINVAKKIKTPSLSVYLKPEVSRAKERAKSVQCALEYTTLRSVTHATEV 1481
            NVTLGVPRLREIINVAKKIKTPSLSVYLKPEV + KERAK+VQCALEYTTLRSVT ATEV
Sbjct: 1112 NVTLGVPRLREIINVAKKIKTPSLSVYLKPEVGKTKERAKTVQCALEYTTLRSVTQATEV 1171

Query: 1480 WYDPDPMSTIIPEDVEFVKSYYEMPDEEIDPDKISPWLLRIELNREMMVDKKLSMADIAE 1301
            WYDPDPMST+I EDVEFVKSYYEMPDEEIDPDKISPWLLRIELNREMMVDKKLSMADIAE
Sbjct: 1172 WYDPDPMSTLIEEDVEFVKSYYEMPDEEIDPDKISPWLLRIELNREMMVDKKLSMADIAE 1231

Query: 1300 KINLEFDDDLTCIFNDDNADKLILRIRIMNDEAPKGELNDESEDDVFLKKIESNMLTEMA 1121
            KINLEFDDDLTCIFNDDNA+KLILRIRIMNDEAPKGEL++ +EDDVFLKKIESNMLTEMA
Sbjct: 1232 KINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGELDESAEDDVFLKKIESNMLTEMA 1291

Query: 1120 LRGIPDINKVFIKNTKVNKFNQEEGFRADNEWMLDTEGVNLLAVMCHEDVDAKRTTSNHL 941
            LRGIPDINKVFIKN+KV KF+  EGF+A+NEWMLDTEGVNLLAVM HEDVDA RTTSNHL
Sbjct: 1292 LRGIPDINKVFIKNSKVQKFDDNEGFKAENEWMLDTEGVNLLAVMTHEDVDASRTTSNHL 1351

Query: 940  IEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRN 761
            IEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRN
Sbjct: 1352 IEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRN 1411

Query: 760  DTGPLMRCSFEETVDILLDAAVFAETDHLRGVTENIMLGQLAPIGTGDCGLLLNEEMLKQ 581
            DTGP+MRCSFEETVDILLDAAVFAE+DHLRGVTENIMLGQLAPIGTG C L LNEEMLKQ
Sbjct: 1412 DTGPMMRCSFEETVDILLDAAVFAESDHLRGVTENIMLGQLAPIGTGGCSLYLNEEMLKQ 1471

Query: 580  AIEIPLPSYMEGNLEFGMTPGRSPITGTPYHEGMMSPSYLLSPNVRLSPASDAQFSPYVS 401
            AIEIPLPSYMEG LEFGMTPGRSPI+GTPYH+GMMSP+YLLSPN+R+SP +DAQFSPYV 
Sbjct: 1472 AIEIPLPSYMEGGLEFGMTPGRSPISGTPYHDGMMSPNYLLSPNMRMSPITDAQFSPYVG 1531

Query: 400  GMAF 389
            GMAF
Sbjct: 1532 GMAF 1535


>ref|XP_006340787.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like [Solanum
            tuberosum]
          Length = 1839

 Score = 1433 bits (3709), Expect = 0.0
 Identities = 710/784 (90%), Positives = 750/784 (95%)
 Frame = -1

Query: 2740 QKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFVDRTLPHFLKEDLG 2561
            +KSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIP+GF+DRTLPHF K+D G
Sbjct: 752  EKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYG 811

Query: 2560 PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 2381
            PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD
Sbjct: 812  PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 871

Query: 2380 GTVRNSLGDVIQFLYGEDGMDAVWIESQKLEALKVKKSEFDDMFKYEIDDPTWQPDYMHP 2201
            GTVRNSLGDVIQFLYGEDGMD+VWIE+QKL++LK KK  FDDM+ YEIDDP W P YM P
Sbjct: 872  GTVRNSLGDVIQFLYGEDGMDSVWIETQKLDSLKAKKGTFDDMYAYEIDDPNWNPSYMLP 931

Query: 2200 EAVEDLKTIREIRSVFDAEVQKLEADRLLLGSEIATTGDNTWPLPVNIKRLISNAQKTFK 2021
            EAVEDLK IREIRSVFDAEVQKLEADR  LG+EIA TGDN+WPLPVNI+RL+ NAQKTFK
Sbjct: 932  EAVEDLKGIREIRSVFDAEVQKLEADRHQLGTEIAVTGDNSWPLPVNIQRLVLNAQKTFK 991

Query: 2020 IDFRRPSDMHPLQIVEFVDKLQERLKVVHGDDYLSKEAQKNATLFFNILLRSSLASKRVL 1841
            IDFRRPSDMHP++IVE VDKLQERLKVV GDDYLS EAQKNATLFFNILLRS+LASKRVL
Sbjct: 992  IDFRRPSDMHPMEIVEAVDKLQERLKVVPGDDYLSMEAQKNATLFFNILLRSALASKRVL 1051

Query: 1840 KDYRLTQEAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK 1661
            K+YRL++EAFEWV+GEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK
Sbjct: 1052 KEYRLSREAFEWVVGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK 1111

Query: 1660 NVTLGVPRLREIINVAKKIKTPSLSVYLKPEVSRAKERAKSVQCALEYTTLRSVTHATEV 1481
            NVTLGVPRLREIINVAKKIKTPSLSVYLKPEV + KERAK+VQCALEYTTLRSVT ATEV
Sbjct: 1112 NVTLGVPRLREIINVAKKIKTPSLSVYLKPEVGKTKERAKTVQCALEYTTLRSVTQATEV 1171

Query: 1480 WYDPDPMSTIIPEDVEFVKSYYEMPDEEIDPDKISPWLLRIELNREMMVDKKLSMADIAE 1301
            WYDPDPMST+I EDVEFVKSYYEMPDEEIDPDKISPWLLRIELNREMMVDKKLSMADIAE
Sbjct: 1172 WYDPDPMSTLIEEDVEFVKSYYEMPDEEIDPDKISPWLLRIELNREMMVDKKLSMADIAE 1231

Query: 1300 KINLEFDDDLTCIFNDDNADKLILRIRIMNDEAPKGELNDESEDDVFLKKIESNMLTEMA 1121
            KIN+EFDDDLTCIFNDDNA+KLILRIRIMNDEAPKGEL++ +EDDVFLKKIESNMLTEMA
Sbjct: 1232 KINVEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGELDESAEDDVFLKKIESNMLTEMA 1291

Query: 1120 LRGIPDINKVFIKNTKVNKFNQEEGFRADNEWMLDTEGVNLLAVMCHEDVDAKRTTSNHL 941
            LRGIPDINKVFIKN+KV KF+  EGF+A+NEWMLDTEGVNLLAVM HEDVDA RTTSNHL
Sbjct: 1292 LRGIPDINKVFIKNSKVQKFDDNEGFKAENEWMLDTEGVNLLAVMTHEDVDASRTTSNHL 1351

Query: 940  IEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRN 761
            IEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRN
Sbjct: 1352 IEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRN 1411

Query: 760  DTGPLMRCSFEETVDILLDAAVFAETDHLRGVTENIMLGQLAPIGTGDCGLLLNEEMLKQ 581
            DTGP+MRCSFEETVDILLDAAVFAE+DHLRGVTENIMLGQLAPIGTG C L LNEEMLKQ
Sbjct: 1412 DTGPMMRCSFEETVDILLDAAVFAESDHLRGVTENIMLGQLAPIGTGSCSLYLNEEMLKQ 1471

Query: 580  AIEIPLPSYMEGNLEFGMTPGRSPITGTPYHEGMMSPSYLLSPNVRLSPASDAQFSPYVS 401
            AIEIPLPSYMEG LEFGMTPGRSPI+GTPYH+GMMSP+YLLSPN+R+SP +DAQFSPYV 
Sbjct: 1472 AIEIPLPSYMEGGLEFGMTPGRSPISGTPYHDGMMSPNYLLSPNMRMSPITDAQFSPYVG 1531

Query: 400  GMAF 389
            GMAF
Sbjct: 1532 GMAF 1535


>gb|EPS67076.1| hypothetical protein M569_07699, partial [Genlisea aurea]
          Length = 1171

 Score = 1425 bits (3688), Expect = 0.0
 Identities = 703/785 (89%), Positives = 754/785 (96%), Gaps = 1/785 (0%)
 Frame = -1

Query: 2740 QKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFVDRTLPHFLKEDLG 2561
            QKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIP+GF+DRTLPHF K+D G
Sbjct: 105  QKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYG 164

Query: 2560 PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 2381
            PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD
Sbjct: 165  PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 224

Query: 2380 GTVRNSLGDVIQFLYGEDGMDAVWIESQKLEALKVKKSEFDDMFKYEIDDPTWQPDYMHP 2201
            GTVRNSLGDVIQFLYGEDGMDAVWIESQ LE+LK+KKS+F+DM+++E DDP W P+YM P
Sbjct: 225  GTVRNSLGDVIQFLYGEDGMDAVWIESQPLESLKLKKSDFNDMYRFEFDDPNWNPNYMLP 284

Query: 2200 EAVEDLKTIREIRSVFDAEVQKLEADRLLLGSEIATTGDNTWPLPVNIKRLISNAQKTFK 2021
            EA+ED+K I E+RSVFDAEVQKLE DRL LG+EIAT+GDN+WPLPVNI+RL+ NAQKTFK
Sbjct: 285  EAIEDVKIIHEVRSVFDAEVQKLETDRLQLGTEIATSGDNSWPLPVNIRRLVLNAQKTFK 344

Query: 2020 IDFRRPSDMHPLQIVEFVDKLQERLKVVHGDDYLSKEAQKNATLFFNILLRSSLASKRVL 1841
            +DFRRPSD++P++IVE VDKLQERLKVV GDDYLS EAQKNATLFFNILLRS+LASKRVL
Sbjct: 345  VDFRRPSDIYPMEIVEAVDKLQERLKVVVGDDYLSMEAQKNATLFFNILLRSALASKRVL 404

Query: 1840 KDYRLTQEAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK 1661
            K+YRLT+EAF+WVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK
Sbjct: 405  KEYRLTREAFDWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK 464

Query: 1660 NVTLGVPRLREIINVAKKIKTPSLSVYLKPEVSRAKERAKSVQCALEYTTLRSVTHATEV 1481
            NVTLGVPRLREIINVAKKIKTPSLSVYL  E S+ KERAK+VQCALEYTTLRSVT ATEV
Sbjct: 465  NVTLGVPRLREIINVAKKIKTPSLSVYLNAEASKTKERAKNVQCALEYTTLRSVTQATEV 524

Query: 1480 WYDPDPMSTIIPEDVEFVKSYYEMPDEEIDPDKISPWLLRIELNREMMVDKKLSMADIAE 1301
            WYDPDPMSTII ED+EFVKSYYEMPDEEIDPDKISPWLLRIELNREMMVDKKLSMADIAE
Sbjct: 525  WYDPDPMSTIIEEDIEFVKSYYEMPDEEIDPDKISPWLLRIELNREMMVDKKLSMADIAE 584

Query: 1300 KINLEFDDDLTCIFNDDNADKLILRIRIMNDEAPKGELNDES-EDDVFLKKIESNMLTEM 1124
            KINLEFDDDLTCIFNDDNA+KLILRIRIMNDEAPKGELNDES EDDVFLKKIESNMLTEM
Sbjct: 585  KINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEM 644

Query: 1123 ALRGIPDINKVFIKNTKVNKFNQEEGFRADNEWMLDTEGVNLLAVMCHEDVDAKRTTSNH 944
            ALRGIPDINKVFIKN+KVN+F++ +GF+A+NEWMLDTEGVNLLAV+CH DVD+KRTTSNH
Sbjct: 645  ALRGIPDINKVFIKNSKVNRFDEIDGFKAENEWMLDTEGVNLLAVLCHPDVDSKRTTSNH 704

Query: 943  LIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINR 764
            LIEVIEVLGIEAVR++LLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINR
Sbjct: 705  LIEVIEVLGIEAVRKALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINR 764

Query: 763  NDTGPLMRCSFEETVDILLDAAVFAETDHLRGVTENIMLGQLAPIGTGDCGLLLNEEMLK 584
            NDTGP+MRCSFEETVDILLDAAV+AETDHL+GVTENIMLGQLAPIGTGDC L LNEEMLK
Sbjct: 765  NDTGPMMRCSFEETVDILLDAAVYAETDHLKGVTENIMLGQLAPIGTGDCALYLNEEMLK 824

Query: 583  QAIEIPLPSYMEGNLEFGMTPGRSPITGTPYHEGMMSPSYLLSPNVRLSPASDAQFSPYV 404
            QAIEIPLPSY +G L+FGMTPGRSP+TGTPYH+GMMSPSYLLSPN RLSP +DAQFSPYV
Sbjct: 825  QAIEIPLPSYYDGGLDFGMTPGRSPLTGTPYHDGMMSPSYLLSPNHRLSPVTDAQFSPYV 884

Query: 403  SGMAF 389
             GMAF
Sbjct: 885  GGMAF 889


>ref|XP_002285900.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Vitis
            vinifera]
          Length = 1848

 Score = 1409 bits (3646), Expect = 0.0
 Identities = 703/785 (89%), Positives = 746/785 (95%), Gaps = 1/785 (0%)
 Frame = -1

Query: 2740 QKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFVDRTLPHFLKEDLG 2561
            QKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGF+DRTLPHF K+D G
Sbjct: 752  QKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFTKDDYG 811

Query: 2560 PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 2381
            PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD
Sbjct: 812  PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 871

Query: 2380 GTVRNSLGDVIQFLYGEDGMDAVWIESQKLEALKVKKSEFDDMFKYEIDDPTWQPDYMHP 2201
            GTVRNSLGDVIQFLYGEDGMDAVWIE+QKL++LK+KK EFD +FKYEIDD  W P YM P
Sbjct: 872  GTVRNSLGDVIQFLYGEDGMDAVWIETQKLDSLKMKKGEFDRVFKYEIDDENWNPSYMLP 931

Query: 2200 EAVEDLKTIREIRSVFDAEVQKLEADRLLLGSEIATTGDNTWPLPVNIKRLISNAQKTFK 2021
            E VEDLKTIRE R+VFDAEVQKLEADR  LG+EIATTGDN+WP+PVN+KRLI NAQKTFK
Sbjct: 932  EHVEDLKTIREFRNVFDAEVQKLEADRFQLGTEIATTGDNSWPMPVNLKRLIWNAQKTFK 991

Query: 2020 IDFRRPSDMHPLQIVEFVDKLQERLKVVHGDDYLSKEAQKNATLFFNILLRSSLASKRVL 1841
            +D RRPSDMHP++IVE VDKLQERLKVV GDD +S EAQKNATLFFNILLRS+ ASKRVL
Sbjct: 992  VDLRRPSDMHPMEIVEAVDKLQERLKVVPGDDLISMEAQKNATLFFNILLRSTFASKRVL 1051

Query: 1840 KDYRLTQEAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK 1661
            K+YRLT+EAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK
Sbjct: 1052 KEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK 1111

Query: 1660 NVTLGVPRLREIINVAKKIKTPSLSVYLKPEVSRAKERAKSVQCALEYTTLRSVTHATEV 1481
            NVTLGVPRLREIINVAKKIKTPSLSVYLKP+VS+ KERAK+VQCALEYTTLRSVT ATEV
Sbjct: 1112 NVTLGVPRLREIINVAKKIKTPSLSVYLKPDVSKTKERAKNVQCALEYTTLRSVTQATEV 1171

Query: 1480 WYDPDPMSTIIPEDVEFVKSYYEMPDEEIDPDKISPWLLRIELNREMMVDKKLSMADIAE 1301
            WYDPDPMSTII EDV+FVKSYYEMPDEE+ P+KISPWLLRIELNREMMVDKKLSMADIAE
Sbjct: 1172 WYDPDPMSTIIEEDVDFVKSYYEMPDEEVAPEKISPWLLRIELNREMMVDKKLSMADIAE 1231

Query: 1300 KINLEFDDDLTCIFNDDNADKLILRIRIMNDEAPKGELNDES-EDDVFLKKIESNMLTEM 1124
            KINLEFDDDLTCIFNDDNA+KLILRIRIMNDEAPKGEL DES EDDVFLKKIESNMLTEM
Sbjct: 1232 KINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGELQDESAEDDVFLKKIESNMLTEM 1291

Query: 1123 ALRGIPDINKVFIKNTKVNKFNQEEGFRADNEWMLDTEGVNLLAVMCHEDVDAKRTTSNH 944
            ALRGIPDINKVFIK+ KVNKF++ EGF+ + EWMLDTEGVNLLAVMCHEDVDA+RTTSNH
Sbjct: 1292 ALRGIPDINKVFIKSGKVNKFDESEGFKPEVEWMLDTEGVNLLAVMCHEDVDARRTTSNH 1351

Query: 943  LIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINR 764
            LIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINR
Sbjct: 1352 LIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINR 1411

Query: 763  NDTGPLMRCSFEETVDILLDAAVFAETDHLRGVTENIMLGQLAPIGTGDCGLLLNEEMLK 584
            NDTGP+MRCSFEETVDILLDAAV+AETD LRGVTENIMLGQLAPIGTGDC L LN++ML+
Sbjct: 1412 NDTGPMMRCSFEETVDILLDAAVYAETDFLRGVTENIMLGQLAPIGTGDCALYLNDQMLQ 1471

Query: 583  QAIEIPLPSYMEGNLEFGMTPGRSPITGTPYHEGMMSPSYLLSPNVRLSPASDAQFSPYV 404
             AIE+ LPSYMEG L+FGMTP RSPITGTPYH+GMMSP+YLLSPN+RLSP +DAQFSPYV
Sbjct: 1472 HAIELQLPSYMEG-LDFGMTPSRSPITGTPYHDGMMSPNYLLSPNLRLSPITDAQFSPYV 1530

Query: 403  SGMAF 389
             GMAF
Sbjct: 1531 GGMAF 1535


>ref|XP_006659128.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like [Oryza
            brachyantha]
          Length = 1855

 Score = 1397 bits (3617), Expect = 0.0
 Identities = 694/785 (88%), Positives = 743/785 (94%), Gaps = 1/785 (0%)
 Frame = -1

Query: 2740 QKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFVDRTLPHFLKEDLG 2561
            QKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIP+GF+DRTLPHF K+D G
Sbjct: 752  QKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYG 811

Query: 2560 PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 2381
            PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD
Sbjct: 812  PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 871

Query: 2380 GTVRNSLGDVIQFLYGEDGMDAVWIESQKLEALKVKKSEFDDMFKYEIDDPTWQPDYMHP 2201
            GTVRNSLGDVIQFLYGEDGMDAVWIESQKL++LK+KK EFD +F+YE+DD  W+P+YM P
Sbjct: 872  GTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKGEFDTVFRYELDDENWRPNYMLP 931

Query: 2200 EAVEDLKTIREIRSVFDAEVQKLEADRLLLGSEIATTGDNTWPLPVNIKRLISNAQKTFK 2021
            E VEDLKTIRE R+VF+AEVQKLEADR  LG+EIATTGDNTWP+PVN+KRLI NAQKTFK
Sbjct: 932  EHVEDLKTIREFRNVFEAEVQKLEADRFQLGTEIATTGDNTWPMPVNLKRLIWNAQKTFK 991

Query: 2020 IDFRRPSDMHPLQIVEFVDKLQERLKVVHGDDYLSKEAQKNATLFFNILLRSSLASKRVL 1841
            ID RRPSDMHP++IVE +DKLQERLKVV GDD +S EAQKNATLFFNILLRS+ ASKRVL
Sbjct: 992  IDLRRPSDMHPMEIVEAIDKLQERLKVVPGDDAMSIEAQKNATLFFNILLRSTFASKRVL 1051

Query: 1840 KDYRLTQEAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK 1661
            K+YRLT+EAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK
Sbjct: 1052 KEYRLTKEAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK 1111

Query: 1660 NVTLGVPRLREIINVAKKIKTPSLSVYLKPEVSRAKERAKSVQCALEYTTLRSVTHATEV 1481
            NVTLGVPRLREIINVAKKIKTPSLSVYLKPEV++ KE AK+VQCALEYTTLRSVTHATE+
Sbjct: 1112 NVTLGVPRLREIINVAKKIKTPSLSVYLKPEVNKKKELAKNVQCALEYTTLRSVTHATEI 1171

Query: 1480 WYDPDPMSTIIPEDVEFVKSYYEMPDEEIDPDKISPWLLRIELNREMMVDKKLSMADIAE 1301
            WYDPDP+ TII EDVEFV+SYYEMPDE++DPDKISPWLLRIELNREMMVDKKLSMADIAE
Sbjct: 1172 WYDPDPLGTIIEEDVEFVRSYYEMPDEDVDPDKISPWLLRIELNREMMVDKKLSMADIAE 1231

Query: 1300 KINLEFDDDLTCIFNDDNADKLILRIRIMNDEAPKGELNDES-EDDVFLKKIESNMLTEM 1124
            KIN EFDDDL+CIFNDDNADKLILR+RI NDEAPKGE+ DES EDDVFLKKIESNMLTEM
Sbjct: 1232 KINHEFDDDLSCIFNDDNADKLILRVRITNDEAPKGEIQDESAEDDVFLKKIESNMLTEM 1291

Query: 1123 ALRGIPDINKVFIKNTKVNKFNQEEGFRADNEWMLDTEGVNLLAVMCHEDVDAKRTTSNH 944
            ALRGIPDINKVFIK  KVNKF   +GF+ DNEWMLDTEGVNLLAVMCHEDVDA RTTSNH
Sbjct: 1292 ALRGIPDINKVFIKYGKVNKFEDNDGFKPDNEWMLDTEGVNLLAVMCHEDVDATRTTSNH 1351

Query: 943  LIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINR 764
            LIEVIEVLGIEAVRR+LLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINR
Sbjct: 1352 LIEVIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINR 1411

Query: 763  NDTGPLMRCSFEETVDILLDAAVFAETDHLRGVTENIMLGQLAPIGTGDCGLLLNEEMLK 584
            NDTGPLMRCSFEETVDILLDAAV+AE+D+LRGVTENIMLGQLAPIGTG C L LN++ML+
Sbjct: 1412 NDTGPLMRCSFEETVDILLDAAVYAESDYLRGVTENIMLGQLAPIGTGGCALYLNDQMLQ 1471

Query: 583  QAIEIPLPSYMEGNLEFGMTPGRSPITGTPYHEGMMSPSYLLSPNVRLSPASDAQFSPYV 404
            QAIE+ LPSY+EG L+FGMTP RSPI+GTPYHEGMMSPSYLLSPN+R SP +DAQFSPYV
Sbjct: 1472 QAIELQLPSYVEG-LDFGMTPARSPISGTPYHEGMMSPSYLLSPNIRASPITDAQFSPYV 1530

Query: 403  SGMAF 389
             GMAF
Sbjct: 1531 GGMAF 1535


>gb|EMJ04257.1| hypothetical protein PRUPE_ppa000093mg [Prunus persica]
          Length = 1844

 Score = 1397 bits (3617), Expect = 0.0
 Identities = 697/785 (88%), Positives = 742/785 (94%), Gaps = 1/785 (0%)
 Frame = -1

Query: 2740 QKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFVDRTLPHFLKEDLG 2561
            QKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGF+DRTLPHF K+D G
Sbjct: 752  QKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFTKDDYG 811

Query: 2560 PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 2381
            PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD
Sbjct: 812  PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 871

Query: 2380 GTVRNSLGDVIQFLYGEDGMDAVWIESQKLEALKVKKSEFDDMFKYEIDDPTWQPDYMHP 2201
            GTVRNSLGDVIQFLYGEDGMDAVWIESQKL++LK+KKSEFD  F YE+DD  W PDYM  
Sbjct: 872  GTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKSEFDKTFSYELDDENWNPDYMLH 931

Query: 2200 EAVEDLKTIREIRSVFDAEVQKLEADRLLLGSEIATTGDNTWPLPVNIKRLISNAQKTFK 2021
            E VEDLKTIRE R+VFDAEVQKLE DRL LG+EIA TGDN+WPLPVN+KRLI NAQKTFK
Sbjct: 932  EHVEDLKTIREFRNVFDAEVQKLETDRLQLGTEIAVTGDNSWPLPVNLKRLIWNAQKTFK 991

Query: 2020 IDFRRPSDMHPLQIVEFVDKLQERLKVVHGDDYLSKEAQKNATLFFNILLRSSLASKRVL 1841
            IDFRR SDMHP++IVE +DKLQERLKVV GDD LS EAQKNATLFF+ILLRS+ ASKRVL
Sbjct: 992  IDFRRTSDMHPMEIVEAIDKLQERLKVVPGDDLLSVEAQKNATLFFSILLRSTFASKRVL 1051

Query: 1840 KDYRLTQEAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK 1661
             +YRLT+EAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK
Sbjct: 1052 DEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK 1111

Query: 1660 NVTLGVPRLREIINVAKKIKTPSLSVYLKPEVSRAKERAKSVQCALEYTTLRSVTHATEV 1481
            NVTLGVPRLREIINVAK+IKTPSLSVYLKPE ++ KERAK+VQCALEYTTLRSVT ATEV
Sbjct: 1112 NVTLGVPRLREIINVAKRIKTPSLSVYLKPEANKTKERAKNVQCALEYTTLRSVTQATEV 1171

Query: 1480 WYDPDPMSTIIPEDVEFVKSYYEMPDEEIDPDKISPWLLRIELNREMMVDKKLSMADIAE 1301
            WYDPDPMSTII EDV+FV SYYEMPDEE++PDKISPWLLRIELNREMMVDKKLSMADIAE
Sbjct: 1172 WYDPDPMSTIIEEDVDFVNSYYEMPDEEVNPDKISPWLLRIELNREMMVDKKLSMADIAE 1231

Query: 1300 KINLEFDDDLTCIFNDDNADKLILRIRIMNDEAPKGELNDES-EDDVFLKKIESNMLTEM 1124
            KINLEFDDDLTCIFNDDNA+KLILRIRIMN EAPKGEL DES EDDVFLKKIESNMLTEM
Sbjct: 1232 KINLEFDDDLTCIFNDDNAEKLILRIRIMNAEAPKGELVDESAEDDVFLKKIESNMLTEM 1291

Query: 1123 ALRGIPDINKVFIKNTKVNKFNQEEGFRADNEWMLDTEGVNLLAVMCHEDVDAKRTTSNH 944
            ALRGIPDINKVFIK+ KVNKF+  EGF+A+ EWMLDTEGVNLLAV+CH+DVDA+RTTSNH
Sbjct: 1292 ALRGIPDINKVFIKHGKVNKFDPNEGFKAEQEWMLDTEGVNLLAVLCHDDVDARRTTSNH 1351

Query: 943  LIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINR 764
            LIE++E+LGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINR
Sbjct: 1352 LIEILEILGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINR 1411

Query: 763  NDTGPLMRCSFEETVDILLDAAVFAETDHLRGVTENIMLGQLAPIGTGDCGLLLNEEMLK 584
            NDTGP+MRCSFEETVDILLDAAVFAETD+LRGVTENIMLGQLAPIGTGDC L LN+EMLK
Sbjct: 1412 NDTGPMMRCSFEETVDILLDAAVFAETDYLRGVTENIMLGQLAPIGTGDCALYLNDEMLK 1471

Query: 583  QAIEIPLPSYMEGNLEFGMTPGRSPITGTPYHEGMMSPSYLLSPNVRLSPASDAQFSPYV 404
             AIE+ LPSYM+G L+FGMTP RSP++GTPYHEGMMSP+YLLSPN+RLSP SDAQFSPYV
Sbjct: 1472 NAIELQLPSYMDG-LDFGMTPSRSPVSGTPYHEGMMSPNYLLSPNLRLSPISDAQFSPYV 1530

Query: 403  SGMAF 389
             GMAF
Sbjct: 1531 GGMAF 1535


>gb|EXC35292.1| DNA-directed RNA polymerase II subunit rpb1 [Morus notabilis]
          Length = 1866

 Score = 1397 bits (3616), Expect = 0.0
 Identities = 694/785 (88%), Positives = 747/785 (95%), Gaps = 1/785 (0%)
 Frame = -1

Query: 2740 QKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFVDRTLPHFLKEDLG 2561
            QKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGF+DRTLPHF K+D G
Sbjct: 767  QKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFTKDDYG 826

Query: 2560 PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 2381
            PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD
Sbjct: 827  PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 886

Query: 2380 GTVRNSLGDVIQFLYGEDGMDAVWIESQKLEALKVKKSEFDDMFKYEIDDPTWQPDYMHP 2201
            GTVRNSLGDVIQFLYGEDGMD+VWIESQKL++LK+KK+EF+ +F+YE D+ TW P YM P
Sbjct: 887  GTVRNSLGDVIQFLYGEDGMDSVWIESQKLDSLKMKKTEFERVFRYEFDNETWNPTYMLP 946

Query: 2200 EAVEDLKTIREIRSVFDAEVQKLEADRLLLGSEIATTGDNTWPLPVNIKRLISNAQKTFK 2021
            E VEDLKTIRE R+VFDAEVQKLE+DRL LG+EIATTGDN+WPLPVN+KRLI NAQKTFK
Sbjct: 947  EHVEDLKTIREFRNVFDAEVQKLESDRLQLGTEIATTGDNSWPLPVNLKRLIQNAQKTFK 1006

Query: 2020 IDFRRPSDMHPLQIVEFVDKLQERLKVVHGDDYLSKEAQKNATLFFNILLRSSLASKRVL 1841
            IDFRR SDMHP++IVE +DKLQERLKVV G+D LS EAQKNATLFFNILLRS+ ASKRVL
Sbjct: 1007 IDFRRTSDMHPMEIVEAIDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVL 1066

Query: 1840 KDYRLTQEAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK 1661
            ++YRLT+E FEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK
Sbjct: 1067 EEYRLTREGFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK 1126

Query: 1660 NVTLGVPRLREIINVAKKIKTPSLSVYLKPEVSRAKERAKSVQCALEYTTLRSVTHATEV 1481
            NVTLGVPRLREIINVAK+IKTPSLSV+LKPE S+ KERAK+VQCALEYTTLRSVT ATEV
Sbjct: 1127 NVTLGVPRLREIINVAKRIKTPSLSVFLKPEASKTKERAKTVQCALEYTTLRSVTQATEV 1186

Query: 1480 WYDPDPMSTIIPEDVEFVKSYYEMPDEEIDPDKISPWLLRIELNREMMVDKKLSMADIAE 1301
            WYDPDPMSTII EDV+FV+SYYEMPDEEI+PDKISPWLLRIELNREMMVDKKLSMADIAE
Sbjct: 1187 WYDPDPMSTIIDEDVDFVRSYYEMPDEEINPDKISPWLLRIELNREMMVDKKLSMADIAE 1246

Query: 1300 KINLEFDDDLTCIFNDDNADKLILRIRIMNDEAPKGELNDE-SEDDVFLKKIESNMLTEM 1124
            KIN+EFDDDLTCIFNDDNA+KLILRIRIMNDEAPKG+L DE +EDDVFLKKIESNMLTEM
Sbjct: 1247 KINVEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGDLTDEAAEDDVFLKKIESNMLTEM 1306

Query: 1123 ALRGIPDINKVFIKNTKVNKFNQEEGFRADNEWMLDTEGVNLLAVMCHEDVDAKRTTSNH 944
            +LRGIPDINKVFIK+ KVNKF++ +GF+ +NEWMLDTEGVNLLAV+CHEDVDAKRTTSNH
Sbjct: 1307 SLRGIPDINKVFIKHGKVNKFDENDGFKPENEWMLDTEGVNLLAVICHEDVDAKRTTSNH 1366

Query: 943  LIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINR 764
            LIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINR
Sbjct: 1367 LIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINR 1426

Query: 763  NDTGPLMRCSFEETVDILLDAAVFAETDHLRGVTENIMLGQLAPIGTGDCGLLLNEEMLK 584
            NDTGP+MRCSFEETVDILLDAAV+AETD+LRGVTENIMLGQLAPIGTG C L LN+EMLK
Sbjct: 1427 NDTGPMMRCSFEETVDILLDAAVYAETDYLRGVTENIMLGQLAPIGTGGCALYLNDEMLK 1486

Query: 583  QAIEIPLPSYMEGNLEFGMTPGRSPITGTPYHEGMMSPSYLLSPNVRLSPASDAQFSPYV 404
             AIE+ LPSYM+G L+FGMTP RSP++GTPYHEGMMSP YLLSPN+RLSP SDAQFSPYV
Sbjct: 1487 NAIELQLPSYMDG-LDFGMTPSRSPVSGTPYHEGMMSPGYLLSPNLRLSPISDAQFSPYV 1545

Query: 403  SGMAF 389
             GMAF
Sbjct: 1546 GGMAF 1550


>gb|EEE68068.1| hypothetical protein OsJ_26081 [Oryza sativa Japonica Group]
          Length = 1526

 Score = 1397 bits (3615), Expect = 0.0
 Identities = 695/785 (88%), Positives = 743/785 (94%), Gaps = 1/785 (0%)
 Frame = -1

Query: 2740 QKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFVDRTLPHFLKEDLG 2561
            QKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIP+GF+DRTLPHF K+D G
Sbjct: 423  QKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYG 482

Query: 2560 PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 2381
            PESRGFVENSYLRGLTPQEFFFHAMGGRE LIDTAVKTSETGYIQRRLVKAMEDIMVKYD
Sbjct: 483  PESRGFVENSYLRGLTPQEFFFHAMGGRESLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 542

Query: 2380 GTVRNSLGDVIQFLYGEDGMDAVWIESQKLEALKVKKSEFDDMFKYEIDDPTWQPDYMHP 2201
            GTVRNSLGDVIQFLYGEDGMDAVWIESQKL++LK+KK EFD++F+YE+DD  W+P+YM P
Sbjct: 543  GTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKGEFDNVFRYELDDENWRPNYMLP 602

Query: 2200 EAVEDLKTIREIRSVFDAEVQKLEADRLLLGSEIATTGDNTWPLPVNIKRLISNAQKTFK 2021
            E V+DLKTIRE R+VF+AEVQKLEADR  LGSEIATTGDNTWP+PVN+KRLI NAQKTFK
Sbjct: 603  EHVDDLKTIREFRNVFEAEVQKLEADRFQLGSEIATTGDNTWPMPVNLKRLIWNAQKTFK 662

Query: 2020 IDFRRPSDMHPLQIVEFVDKLQERLKVVHGDDYLSKEAQKNATLFFNILLRSSLASKRVL 1841
            ID RRPSDMHP++IVE +DKLQERLKVV GDD +S EAQKNATLFFNILLRS+ ASKRVL
Sbjct: 663  IDLRRPSDMHPMEIVEAIDKLQERLKVVPGDDAMSIEAQKNATLFFNILLRSTFASKRVL 722

Query: 1840 KDYRLTQEAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK 1661
            K+YRLT+EAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK
Sbjct: 723  KEYRLTKEAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK 782

Query: 1660 NVTLGVPRLREIINVAKKIKTPSLSVYLKPEVSRAKERAKSVQCALEYTTLRSVTHATEV 1481
            NVTLGVPRLREIINVAKKIKTPSLSVYLKPEV++ KE AK+VQCALEYTTLRSVTHATE+
Sbjct: 783  NVTLGVPRLREIINVAKKIKTPSLSVYLKPEVNKKKELAKNVQCALEYTTLRSVTHATEI 842

Query: 1480 WYDPDPMSTIIPEDVEFVKSYYEMPDEEIDPDKISPWLLRIELNREMMVDKKLSMADIAE 1301
            WYDPDP+ TII EDVEFV+SYYEMPDE+IDPDKISPWLLRIELNREMMVDKKLSMADIAE
Sbjct: 843  WYDPDPLGTIIEEDVEFVRSYYEMPDEDIDPDKISPWLLRIELNREMMVDKKLSMADIAE 902

Query: 1300 KINLEFDDDLTCIFNDDNADKLILRIRIMNDEAPKGELNDES-EDDVFLKKIESNMLTEM 1124
            KIN EFDDDL+CIFNDDNADKLILR+RI NDEAPKGE+ DES EDDVFLKKIESNMLTEM
Sbjct: 903  KINHEFDDDLSCIFNDDNADKLILRVRITNDEAPKGEIQDESAEDDVFLKKIESNMLTEM 962

Query: 1123 ALRGIPDINKVFIKNTKVNKFNQEEGFRADNEWMLDTEGVNLLAVMCHEDVDAKRTTSNH 944
            ALRGIPDINKVFIK  KVNKF    GF+ADNEWMLDTEGVNLLAVMCHEDVDA RTTSNH
Sbjct: 963  ALRGIPDINKVFIKYGKVNKFEDNVGFKADNEWMLDTEGVNLLAVMCHEDVDATRTTSNH 1022

Query: 943  LIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINR 764
            LIEVIEVLGIEAVRR+LLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINR
Sbjct: 1023 LIEVIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINR 1082

Query: 763  NDTGPLMRCSFEETVDILLDAAVFAETDHLRGVTENIMLGQLAPIGTGDCGLLLNEEMLK 584
            NDTGPLMRCSFEETVDILLDAAV+AE+D+LRGVTENIMLGQLAPIGTG C L LN++ML+
Sbjct: 1083 NDTGPLMRCSFEETVDILLDAAVYAESDYLRGVTENIMLGQLAPIGTGGCALYLNDQMLQ 1142

Query: 583  QAIEIPLPSYMEGNLEFGMTPGRSPITGTPYHEGMMSPSYLLSPNVRLSPASDAQFSPYV 404
            QAIE+ LPSY+EG L+FGMTP RSPI+GTPYHEGMMSPSYLLSPN+R SP +DAQFSPYV
Sbjct: 1143 QAIELQLPSYVEG-LDFGMTPARSPISGTPYHEGMMSPSYLLSPNIRASPITDAQFSPYV 1201

Query: 403  SGMAF 389
             GMAF
Sbjct: 1202 GGMAF 1206


>ref|XP_004972810.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like isoform
            X2 [Setaria italica]
          Length = 1852

 Score = 1390 bits (3598), Expect = 0.0
 Identities = 693/786 (88%), Positives = 743/786 (94%), Gaps = 2/786 (0%)
 Frame = -1

Query: 2740 QKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFVDRTLPHFLKEDLG 2561
            QKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIP+GF+DRTLPHF K+D G
Sbjct: 752  QKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYG 811

Query: 2560 PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 2381
            PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD
Sbjct: 812  PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 871

Query: 2380 GTVRNSLGDVIQFLYGEDGMDAVWIESQKLEALKVKKSEFDDMFKYEIDDPTWQPDYMHP 2201
            GTVRNSLGDVIQFLYGEDGMDAVWIESQKL++LK+KK EFD++F+YE+DD  W+P+YM P
Sbjct: 872  GTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKGEFDNVFRYELDDENWRPNYMLP 931

Query: 2200 EAVEDLKTIREIRSVFDAEVQKLEADRLLLGSEIATTGDNTWPLPVNIKRLISNAQKTFK 2021
            E V+DLKTIRE R+VF+AEVQKLEADR  LG+EI TTGDN+WP+PVN+KRLI NAQKTFK
Sbjct: 932  EHVDDLKTIREFRNVFEAEVQKLEADRFQLGTEITTTGDNSWPMPVNLKRLIWNAQKTFK 991

Query: 2020 IDFRRPSDMHPLQIVEFVDKLQERLKVVHGDDYLSKEAQKNATLFFNILLRSSLASKRVL 1841
            IDFRRPSDMHP++IVE +DKLQERLKVV GDD +S EAQKNATLFFNILLRS+ ASKRVL
Sbjct: 992  IDFRRPSDMHPMEIVEAIDKLQERLKVVPGDDAMSIEAQKNATLFFNILLRSTFASKRVL 1051

Query: 1840 KDYRLTQEAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK 1661
            K+YRLT+EAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK
Sbjct: 1052 KEYRLTKEAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK 1111

Query: 1660 NVTLGVPRLREIINVAKKIKTPSLSVYLKPEVSRAKERAKSVQCALEYTTLRSVTHATEV 1481
            NVTLGVPRLREIINVAKKIKTPSLSVYLKPEV++ KE AK+VQCALEYTTLRSVTHATE+
Sbjct: 1112 NVTLGVPRLREIINVAKKIKTPSLSVYLKPEVNKKKELAKNVQCALEYTTLRSVTHATEI 1171

Query: 1480 WYDPDPMSTIIPEDVEFVKSYYEMPDEEIDPDKISPWLLRIELNREMMVDKKLSMADIAE 1301
            WYDPDP+ TII EDVEFV+SYYEMPDE+IDPDKISPWLLRIELNREMM+DKKLSMADIAE
Sbjct: 1172 WYDPDPLGTIIEEDVEFVRSYYEMPDEDIDPDKISPWLLRIELNREMMIDKKLSMADIAE 1231

Query: 1300 KINLEFDDDLTCIFNDDNADKLILRIRIMNDEAPKGELNDES-EDDVFLKKIESNMLTEM 1124
            KIN EFDDDL+CIFNDDNADKLILRIRI ND+APKGE+ DES EDDVFLKKIE NMLTEM
Sbjct: 1232 KINREFDDDLSCIFNDDNADKLILRIRITNDDAPKGEIQDESAEDDVFLKKIEGNMLTEM 1291

Query: 1123 ALRGIPDINKVFIKNTKVNKFNQEEGFRADNEWMLDTEGVNLLAVMCHEDVDAKRTTSNH 944
            ALRGIPDINKVFIK+ KVNKF+Q EGF+ADNEWMLDTEGVNLLAVMCHEDVDA RTTSNH
Sbjct: 1292 ALRGIPDINKVFIKHGKVNKFDQSEGFKADNEWMLDTEGVNLLAVMCHEDVDATRTTSNH 1351

Query: 943  LIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINR 764
            LIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINR
Sbjct: 1352 LIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINR 1411

Query: 763  NDTGPLMRCSFEETVDILLDAAVFAETDHLRGVTENIMLGQLAPIGTGDCGLLLNEEMLK 584
            NDTGPLMRCSFEETVDILLDAAV+AE D LRGVTENIMLGQLAPIGTG C L LN++ML+
Sbjct: 1412 NDTGPLMRCSFEETVDILLDAAVYAEADLLRGVTENIMLGQLAPIGTGGCALYLNDQMLQ 1471

Query: 583  QAIEIPLPSYMEGNLEFGMTPGRSPITGTPYHEGMMSPSYLLSPNVRLSPA-SDAQFSPY 407
            QAIE+ LPSY+EG L+FGMTP RSPI+GTPYHEGMMSPSYLLSPN+R SP  +DA FSPY
Sbjct: 1472 QAIELQLPSYVEG-LDFGMTPARSPISGTPYHEGMMSPSYLLSPNIRASPINTDASFSPY 1530

Query: 406  VSGMAF 389
            V  MAF
Sbjct: 1531 VGHMAF 1536


>ref|XP_004972809.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like isoform
            X1 [Setaria italica]
          Length = 1852

 Score = 1390 bits (3598), Expect = 0.0
 Identities = 693/786 (88%), Positives = 743/786 (94%), Gaps = 2/786 (0%)
 Frame = -1

Query: 2740 QKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFVDRTLPHFLKEDLG 2561
            QKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIP+GF+DRTLPHF K+D G
Sbjct: 752  QKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYG 811

Query: 2560 PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 2381
            PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD
Sbjct: 812  PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 871

Query: 2380 GTVRNSLGDVIQFLYGEDGMDAVWIESQKLEALKVKKSEFDDMFKYEIDDPTWQPDYMHP 2201
            GTVRNSLGDVIQFLYGEDGMDAVWIESQKL++LK+KK EFD++F+YE+DD  W+P+YM P
Sbjct: 872  GTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKGEFDNVFRYELDDENWRPNYMLP 931

Query: 2200 EAVEDLKTIREIRSVFDAEVQKLEADRLLLGSEIATTGDNTWPLPVNIKRLISNAQKTFK 2021
            E V+DLKTIRE R+VF+AEVQKLEADR  LG+EI TTGDN+WP+PVN+KRLI NAQKTFK
Sbjct: 932  EHVDDLKTIREFRNVFEAEVQKLEADRFQLGTEITTTGDNSWPMPVNLKRLIWNAQKTFK 991

Query: 2020 IDFRRPSDMHPLQIVEFVDKLQERLKVVHGDDYLSKEAQKNATLFFNILLRSSLASKRVL 1841
            IDFRRPSDMHP++IVE +DKLQERLKVV GDD +S EAQKNATLFFNILLRS+ ASKRVL
Sbjct: 992  IDFRRPSDMHPMEIVEAIDKLQERLKVVPGDDAMSIEAQKNATLFFNILLRSTFASKRVL 1051

Query: 1840 KDYRLTQEAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK 1661
            K+YRLT+EAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK
Sbjct: 1052 KEYRLTKEAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK 1111

Query: 1660 NVTLGVPRLREIINVAKKIKTPSLSVYLKPEVSRAKERAKSVQCALEYTTLRSVTHATEV 1481
            NVTLGVPRLREIINVAKKIKTPSLSVYLKPEV++ KE AK+VQCALEYTTLRSVTHATE+
Sbjct: 1112 NVTLGVPRLREIINVAKKIKTPSLSVYLKPEVNKKKELAKNVQCALEYTTLRSVTHATEI 1171

Query: 1480 WYDPDPMSTIIPEDVEFVKSYYEMPDEEIDPDKISPWLLRIELNREMMVDKKLSMADIAE 1301
            WYDPDP+ TII EDVEFV+SYYEMPDE+IDPDKISPWLLRIELNREMM+DKKLSMADIAE
Sbjct: 1172 WYDPDPLGTIIEEDVEFVRSYYEMPDEDIDPDKISPWLLRIELNREMMIDKKLSMADIAE 1231

Query: 1300 KINLEFDDDLTCIFNDDNADKLILRIRIMNDEAPKGELNDES-EDDVFLKKIESNMLTEM 1124
            KIN EFDDDL+CIFNDDNADKLILRIRI ND+APKGE+ DES EDDVFLKKIE NMLTEM
Sbjct: 1232 KINREFDDDLSCIFNDDNADKLILRIRITNDDAPKGEIQDESAEDDVFLKKIEGNMLTEM 1291

Query: 1123 ALRGIPDINKVFIKNTKVNKFNQEEGFRADNEWMLDTEGVNLLAVMCHEDVDAKRTTSNH 944
            ALRGIPDINKVFIK+ KVNKF+Q EGF+ADNEWMLDTEGVNLLAVMCHEDVDA RTTSNH
Sbjct: 1292 ALRGIPDINKVFIKHGKVNKFDQSEGFKADNEWMLDTEGVNLLAVMCHEDVDATRTTSNH 1351

Query: 943  LIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINR 764
            LIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINR
Sbjct: 1352 LIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINR 1411

Query: 763  NDTGPLMRCSFEETVDILLDAAVFAETDHLRGVTENIMLGQLAPIGTGDCGLLLNEEMLK 584
            NDTGPLMRCSFEETVDILLDAAV+AE D LRGVTENIMLGQLAPIGTG C L LN++ML+
Sbjct: 1412 NDTGPLMRCSFEETVDILLDAAVYAEADLLRGVTENIMLGQLAPIGTGGCALYLNDQMLQ 1471

Query: 583  QAIEIPLPSYMEGNLEFGMTPGRSPITGTPYHEGMMSPSYLLSPNVRLSPA-SDAQFSPY 407
            QAIE+ LPSY+EG L+FGMTP RSPI+GTPYHEGMMSPSYLLSPN+R SP  +DA FSPY
Sbjct: 1472 QAIELQLPSYVEG-LDFGMTPARSPISGTPYHEGMMSPSYLLSPNIRASPINTDASFSPY 1530

Query: 406  VSGMAF 389
            V  MAF
Sbjct: 1531 VGHMAF 1536


>ref|XP_004169177.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Cucumis
            sativus]
          Length = 1853

 Score = 1388 bits (3592), Expect = 0.0
 Identities = 693/785 (88%), Positives = 743/785 (94%), Gaps = 1/785 (0%)
 Frame = -1

Query: 2740 QKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFVDRTLPHFLKEDLG 2561
            QKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIP+GF+DRTLPHF K+D G
Sbjct: 752  QKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYG 811

Query: 2560 PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 2381
            PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD
Sbjct: 812  PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 871

Query: 2380 GTVRNSLGDVIQFLYGEDGMDAVWIESQKLEALKVKKSEFDDMFKYEIDDPTWQPDYMHP 2201
            GTVRNSLGDVIQFLYGEDGMDAVWIESQKL++LK+KK EF+ +F+YE +D  W+P+YM P
Sbjct: 872  GTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKKEFERIFRYEFEDENWKPNYMLP 931

Query: 2200 EAVEDLKTIREIRSVFDAEVQKLEADRLLLGSEIATTGDNTWPLPVNIKRLISNAQKTFK 2021
            E VEDLKTIRE R+VF+AEVQKLEADR  LG+EIATTG+N+WP+PVN+KRLI NAQKTFK
Sbjct: 932  EHVEDLKTIREFRNVFEAEVQKLEADRYQLGTEIATTGENSWPMPVNLKRLIQNAQKTFK 991

Query: 2020 IDFRRPSDMHPLQIVEFVDKLQERLKVVHGDDYLSKEAQKNATLFFNILLRSSLASKRVL 1841
            IDFRR SDMHP++IVE +DKLQERLKVV G+D LS EAQKNATLFFNILLRS+ ASKRVL
Sbjct: 992  IDFRRASDMHPMEIVEAIDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVL 1051

Query: 1840 KDYRLTQEAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK 1661
             +YRLT+EAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK
Sbjct: 1052 DEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK 1111

Query: 1660 NVTLGVPRLREIINVAKKIKTPSLSVYLKPEVSRAKERAKSVQCALEYTTLRSVTHATEV 1481
            NVTLGVPRLREIINVAK+IKTPSLSVYLKPE ++ KERAK+VQCALEYTTLRSVT ATEV
Sbjct: 1112 NVTLGVPRLREIINVAKRIKTPSLSVYLKPEANKTKERAKTVQCALEYTTLRSVTQATEV 1171

Query: 1480 WYDPDPMSTIIPEDVEFVKSYYEMPDEEIDPDKISPWLLRIELNREMMVDKKLSMADIAE 1301
            WYDPDPMSTII ED++FVKSYYEMPDEEI P+KISPWLLRIELNREMMVDKKLSMA+IAE
Sbjct: 1172 WYDPDPMSTIIEEDIDFVKSYYEMPDEEIAPEKISPWLLRIELNREMMVDKKLSMANIAE 1231

Query: 1300 KINLEFDDDLTCIFNDDNADKLILRIRIMNDEAPKGELNDES-EDDVFLKKIESNMLTEM 1124
            KINLEFDDDLTCIFNDDNA+KLILRIRIMNDEAPKGEL DES EDDVFLKKIESNMLTEM
Sbjct: 1232 KINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGELTDESAEDDVFLKKIESNMLTEM 1291

Query: 1123 ALRGIPDINKVFIKNTKVNKFNQEEGFRADNEWMLDTEGVNLLAVMCHEDVDAKRTTSNH 944
            ALRGIPDINKVFIK  KVNKF++ EGF+ + EWMLDTEGVNLLAVM HEDVDA+RTTSNH
Sbjct: 1292 ALRGIPDINKVFIKCGKVNKFDENEGFKPEMEWMLDTEGVNLLAVMTHEDVDARRTTSNH 1351

Query: 943  LIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINR 764
            LIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINR
Sbjct: 1352 LIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINR 1411

Query: 763  NDTGPLMRCSFEETVDILLDAAVFAETDHLRGVTENIMLGQLAPIGTGDCGLLLNEEMLK 584
            NDTGP+MRCSFEETVDILLDAAV+AETDHLRGVTENIMLGQLAPIGTG C L LN+EMLK
Sbjct: 1412 NDTGPMMRCSFEETVDILLDAAVYAETDHLRGVTENIMLGQLAPIGTGGCALYLNDEMLK 1471

Query: 583  QAIEIPLPSYMEGNLEFGMTPGRSPITGTPYHEGMMSPSYLLSPNVRLSPASDAQFSPYV 404
             AIE+ LPSY++G L+FGMTP RSPI+GTPYHEGMMSP+YLLSPN+RLSP SDAQFSPYV
Sbjct: 1472 NAIELQLPSYIDG-LDFGMTPSRSPISGTPYHEGMMSPNYLLSPNLRLSPISDAQFSPYV 1530

Query: 403  SGMAF 389
             GMAF
Sbjct: 1531 GGMAF 1535


>ref|XP_004146161.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
            subunit RPB1-like [Cucumis sativus]
          Length = 1832

 Score = 1388 bits (3592), Expect = 0.0
 Identities = 693/785 (88%), Positives = 743/785 (94%), Gaps = 1/785 (0%)
 Frame = -1

Query: 2740 QKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFVDRTLPHFLKEDLG 2561
            QKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIP+GF+DRTLPHF K+D G
Sbjct: 752  QKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYG 811

Query: 2560 PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 2381
            PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD
Sbjct: 812  PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 871

Query: 2380 GTVRNSLGDVIQFLYGEDGMDAVWIESQKLEALKVKKSEFDDMFKYEIDDPTWQPDYMHP 2201
            GTVRNSLGDVIQFLYGEDGMDAVWIESQKL++LK+KK EF+ +F+YE +D  W+P+YM P
Sbjct: 872  GTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKKEFERIFRYEFEDENWKPNYMLP 931

Query: 2200 EAVEDLKTIREIRSVFDAEVQKLEADRLLLGSEIATTGDNTWPLPVNIKRLISNAQKTFK 2021
            E VEDLKTIRE R+VF+AEVQKLEADR  LG+EIATTG+N+WP+PVN+KRLI NAQKTFK
Sbjct: 932  EHVEDLKTIREFRNVFEAEVQKLEADRYQLGTEIATTGENSWPMPVNLKRLIQNAQKTFK 991

Query: 2020 IDFRRPSDMHPLQIVEFVDKLQERLKVVHGDDYLSKEAQKNATLFFNILLRSSLASKRVL 1841
            IDFRR SDMHP++IVE +DKLQERLKVV G+D LS EAQKNATLFFNILLRS+ ASKRVL
Sbjct: 992  IDFRRASDMHPMEIVEAIDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVL 1051

Query: 1840 KDYRLTQEAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK 1661
             +YRLT+EAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK
Sbjct: 1052 DEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK 1111

Query: 1660 NVTLGVPRLREIINVAKKIKTPSLSVYLKPEVSRAKERAKSVQCALEYTTLRSVTHATEV 1481
            NVTLGVPRLREIINVAK+IKTPSLSVYLKPE ++ KERAK+VQCALEYTTLRSVT ATEV
Sbjct: 1112 NVTLGVPRLREIINVAKRIKTPSLSVYLKPEANKTKERAKTVQCALEYTTLRSVTQATEV 1171

Query: 1480 WYDPDPMSTIIPEDVEFVKSYYEMPDEEIDPDKISPWLLRIELNREMMVDKKLSMADIAE 1301
            WYDPDPMSTII ED++FVKSYYEMPDEEI P+KISPWLLRIELNREMMVDKKLSMA+IAE
Sbjct: 1172 WYDPDPMSTIIEEDIDFVKSYYEMPDEEIAPEKISPWLLRIELNREMMVDKKLSMANIAE 1231

Query: 1300 KINLEFDDDLTCIFNDDNADKLILRIRIMNDEAPKGELNDES-EDDVFLKKIESNMLTEM 1124
            KINLEFDDDLTCIFNDDNA+KLILRIRIMNDEAPKGEL DES EDDVFLKKIESNMLTEM
Sbjct: 1232 KINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGELTDESAEDDVFLKKIESNMLTEM 1291

Query: 1123 ALRGIPDINKVFIKNTKVNKFNQEEGFRADNEWMLDTEGVNLLAVMCHEDVDAKRTTSNH 944
            ALRGIPDINKVFIK  KVNKF++ EGF+ + EWMLDTEGVNLLAVM HEDVDA+RTTSNH
Sbjct: 1292 ALRGIPDINKVFIKCGKVNKFDENEGFKPEMEWMLDTEGVNLLAVMTHEDVDARRTTSNH 1351

Query: 943  LIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINR 764
            LIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINR
Sbjct: 1352 LIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINR 1411

Query: 763  NDTGPLMRCSFEETVDILLDAAVFAETDHLRGVTENIMLGQLAPIGTGDCGLLLNEEMLK 584
            NDTGP+MRCSFEETVDILLDAAV+AETDHLRGVTENIMLGQLAPIGTG C L LN+EMLK
Sbjct: 1412 NDTGPMMRCSFEETVDILLDAAVYAETDHLRGVTENIMLGQLAPIGTGGCALYLNDEMLK 1471

Query: 583  QAIEIPLPSYMEGNLEFGMTPGRSPITGTPYHEGMMSPSYLLSPNVRLSPASDAQFSPYV 404
             AIE+ LPSY++G L+FGMTP RSPI+GTPYHEGMMSP+YLLSPN+RLSP SDAQFSPYV
Sbjct: 1472 NAIELQLPSYIDG-LDFGMTPSRSPISGTPYHEGMMSPNYLLSPNLRLSPISDAQFSPYV 1530

Query: 403  SGMAF 389
             GMAF
Sbjct: 1531 GGMAF 1535


>ref|XP_004287766.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Fragaria
            vesca subsp. vesca]
          Length = 1842

 Score = 1387 bits (3589), Expect = 0.0
 Identities = 688/785 (87%), Positives = 739/785 (94%), Gaps = 1/785 (0%)
 Frame = -1

Query: 2740 QKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFVDRTLPHFLKEDLG 2561
            QKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGF+DRTLPHF K+D G
Sbjct: 750  QKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFTKDDYG 809

Query: 2560 PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 2381
            PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD
Sbjct: 810  PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 869

Query: 2380 GTVRNSLGDVIQFLYGEDGMDAVWIESQKLEALKVKKSEFDDMFKYEIDDPTWQPDYMHP 2201
            GTVRNSLGDVIQFLYGEDGMDAVWIESQKL++LK+KK EFD  F Y  DD  W PDYM P
Sbjct: 870  GTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKKEFDKTFAYVFDDENWNPDYMLP 929

Query: 2200 EAVEDLKTIREIRSVFDAEVQKLEADRLLLGSEIATTGDNTWPLPVNIKRLISNAQKTFK 2021
            E VEDLKTIRE R+VFDAEV KLE DRL LG+EIA TGDN+WPLPVN+KRLI NAQKTFK
Sbjct: 930  EHVEDLKTIREFRNVFDAEVSKLETDRLQLGTEIAVTGDNSWPLPVNLKRLIWNAQKTFK 989

Query: 2020 IDFRRPSDMHPLQIVEFVDKLQERLKVVHGDDYLSKEAQKNATLFFNILLRSSLASKRVL 1841
            IDFRR SDMHP++IVE +DKLQERL+VV GDD LS EAQKNATLFFNILLRS+ ASKRVL
Sbjct: 990  IDFRRTSDMHPMEIVEAIDKLQERLRVVPGDDLLSVEAQKNATLFFNILLRSTFASKRVL 1049

Query: 1840 KDYRLTQEAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK 1661
            ++YRLT+EAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK
Sbjct: 1050 EEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK 1109

Query: 1660 NVTLGVPRLREIINVAKKIKTPSLSVYLKPEVSRAKERAKSVQCALEYTTLRSVTHATEV 1481
            NVTLGVPRLREIINVAK+IKTPSLSVYLKPE ++ KERAK+VQCALEYTTLRSVT ATEV
Sbjct: 1110 NVTLGVPRLREIINVAKRIKTPSLSVYLKPEANKTKERAKNVQCALEYTTLRSVTQATEV 1169

Query: 1480 WYDPDPMSTIIPEDVEFVKSYYEMPDEEIDPDKISPWLLRIELNREMMVDKKLSMADIAE 1301
            WYDPDPMST+I ED++FV+SYYEMPDEE++PDKISPWLLRIELNREMMVDKKLSMADIAE
Sbjct: 1170 WYDPDPMSTLIEEDLDFVRSYYEMPDEEVNPDKISPWLLRIELNREMMVDKKLSMADIAE 1229

Query: 1300 KINLEFDDDLTCIFNDDNADKLILRIRIMNDEAPKGELNDES-EDDVFLKKIESNMLTEM 1124
            KINLEFD DLTCIFNDDNA+KLILRIRIMN+E PKG+  DES EDDVFLKKIESNMLTEM
Sbjct: 1230 KINLEFDGDLTCIFNDDNAEKLILRIRIMNEETPKGDSQDESAEDDVFLKKIESNMLTEM 1289

Query: 1123 ALRGIPDINKVFIKNTKVNKFNQEEGFRADNEWMLDTEGVNLLAVMCHEDVDAKRTTSNH 944
            ALRGIPDINKVFIK+ KVNKF+Q EGF+A+ EWMLDTEGVNLLAV+CH+DVDAKRTTSNH
Sbjct: 1290 ALRGIPDINKVFIKHGKVNKFDQNEGFKAEQEWMLDTEGVNLLAVLCHDDVDAKRTTSNH 1349

Query: 943  LIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINR 764
            LIE+IEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINR
Sbjct: 1350 LIEIIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINR 1409

Query: 763  NDTGPLMRCSFEETVDILLDAAVFAETDHLRGVTENIMLGQLAPIGTGDCGLLLNEEMLK 584
            NDTGP+MRCSFEETVDILLDA+VFAETDHLRGVTENIMLGQLAPIGTGDC L LN+EMLK
Sbjct: 1410 NDTGPMMRCSFEETVDILLDASVFAETDHLRGVTENIMLGQLAPIGTGDCALYLNDEMLK 1469

Query: 583  QAIEIPLPSYMEGNLEFGMTPGRSPITGTPYHEGMMSPSYLLSPNVRLSPASDAQFSPYV 404
             AIE+ LPSY++G L+FGMTP RSP++GTP+ +GMMSP+YLLSPN+R+SP SDAQFSPYV
Sbjct: 1470 NAIELQLPSYVDG-LDFGMTPSRSPVSGTPFRDGMMSPNYLLSPNMRMSPISDAQFSPYV 1528

Query: 403  SGMAF 389
             GMAF
Sbjct: 1529 GGMAF 1533


>ref|XP_002443877.1| hypothetical protein SORBIDRAFT_07g003680 [Sorghum bicolor]
            gi|241940227|gb|EES13372.1| hypothetical protein
            SORBIDRAFT_07g003680 [Sorghum bicolor]
          Length = 1857

 Score = 1387 bits (3589), Expect = 0.0
 Identities = 693/786 (88%), Positives = 742/786 (94%), Gaps = 2/786 (0%)
 Frame = -1

Query: 2740 QKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFVDRTLPHFLKEDLG 2561
            QKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIP+GF+DRTLPHF K+D G
Sbjct: 751  QKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYG 810

Query: 2560 PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 2381
            PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD
Sbjct: 811  PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 870

Query: 2380 GTVRNSLGDVIQFLYGEDGMDAVWIESQKLEALKVKKSEFDDMFKYEIDDPTWQPDYMHP 2201
            GTVRNSLGDVIQFLYGEDGMDAVWIESQKL++LK+KK EFD++F+YE+DD  W+P+YM P
Sbjct: 871  GTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKPEFDNLFRYELDDENWRPNYMLP 930

Query: 2200 EAVEDLKTIREIRSVFDAEVQKLEADRLLLGSEIATTGDNTWPLPVNIKRLISNAQKTFK 2021
            E V+DLKTIRE R+VF+AEVQKLEADR  LG+EIATTGDN+WP+PVN+KRLI NAQKTF+
Sbjct: 931  EHVDDLKTIREFRNVFEAEVQKLEADRYQLGTEIATTGDNSWPMPVNLKRLIWNAQKTFR 990

Query: 2020 IDFRRPSDMHPLQIVEFVDKLQERLKVVHGDDYLSKEAQKNATLFFNILLRSSLASKRVL 1841
            IDFRRPSDMHP++IVE VDKLQERLKVV GDD +S EAQKNATLFFNILLRS+ ASKRVL
Sbjct: 991  IDFRRPSDMHPMEIVEAVDKLQERLKVVPGDDPMSIEAQKNATLFFNILLRSTFASKRVL 1050

Query: 1840 KDYRLTQEAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK 1661
            K+YRLT+EAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK
Sbjct: 1051 KEYRLTKEAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK 1110

Query: 1660 NVTLGVPRLREIINVAKKIKTPSLSVYLKPEVSRAKERAKSVQCALEYTTLRSVTHATEV 1481
            NVTLGVPRLREIINVAKKIKTPSLSVYLKPEV++ KE AK+VQCALEYTTLRSVTHATE+
Sbjct: 1111 NVTLGVPRLREIINVAKKIKTPSLSVYLKPEVNQKKELAKNVQCALEYTTLRSVTHATEI 1170

Query: 1480 WYDPDPMSTIIPEDVEFVKSYYEMPDEEIDPDKISPWLLRIELNREMMVDKKLSMADIAE 1301
            WYDPDP+ TII ED EFV+SYYEMPDE+IDPDKISPWLLRIELNREMMVDKKLSMADIA+
Sbjct: 1171 WYDPDPLGTIIEEDAEFVQSYYEMPDEDIDPDKISPWLLRIELNREMMVDKKLSMADIAD 1230

Query: 1300 KINLEFDDDLTCIFNDDNADKLILRIRIMNDEAPKGELNDES-EDDVFLKKIESNMLTEM 1124
            KIN EFDDDL+CIFNDDNADKLILRIRI NDEAPKGE+ DES EDDVFLKKIE NMLTEM
Sbjct: 1231 KINREFDDDLSCIFNDDNADKLILRIRITNDEAPKGEIQDESAEDDVFLKKIEGNMLTEM 1290

Query: 1123 ALRGIPDINKVFIKNTKVNKFNQEEGFRADNEWMLDTEGVNLLAVMCHEDVDAKRTTSNH 944
            ALRGIPDINKVFIK  KVN F Q+EGF+A NEWMLDTEGVNLLAVMCHEDVDA RTTSNH
Sbjct: 1291 ALRGIPDINKVFIKEGKVNTFYQDEGFKAANEWMLDTEGVNLLAVMCHEDVDATRTTSNH 1350

Query: 943  LIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINR 764
            LIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINR
Sbjct: 1351 LIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINR 1410

Query: 763  NDTGPLMRCSFEETVDILLDAAVFAETDHLRGVTENIMLGQLAPIGTGDCGLLLNEEMLK 584
            NDTGPLMRCSFEETVDILLDAAV+AE+DHLRGVTENIMLGQLAPIGTG C L LN++ML+
Sbjct: 1411 NDTGPLMRCSFEETVDILLDAAVYAESDHLRGVTENIMLGQLAPIGTGGCALYLNDQMLQ 1470

Query: 583  QAIEIPLPSYMEGNLEFGMTPGRSPITGTPYHEGMMSPSYLLSPNVRLSPA-SDAQFSPY 407
            QAIE+ LPSY+EG L+FGMTP RSPI+GTPYHEGMMSPSYLLSPN+R SP  +DA FSPY
Sbjct: 1471 QAIELQLPSYVEG-LDFGMTPARSPISGTPYHEGMMSPSYLLSPNIRASPINTDASFSPY 1529

Query: 406  VSGMAF 389
            V  MAF
Sbjct: 1530 VGHMAF 1535


>gb|AFW57310.1| RNA polymerase II large subunit family protein [Zea mays]
          Length = 1850

 Score = 1385 bits (3586), Expect = 0.0
 Identities = 692/786 (88%), Positives = 740/786 (94%), Gaps = 2/786 (0%)
 Frame = -1

Query: 2740 QKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFVDRTLPHFLKEDLG 2561
            Q SLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIP+GF+DRTLPHF K+D G
Sbjct: 751  QNSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYG 810

Query: 2560 PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 2381
            PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD
Sbjct: 811  PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 870

Query: 2380 GTVRNSLGDVIQFLYGEDGMDAVWIESQKLEALKVKKSEFDDMFKYEIDDPTWQPDYMHP 2201
            GTVRNSLGDVIQFLYGEDGMDAVWIESQKL++LK+KK EFD++F+YE+DD  W+P+YM P
Sbjct: 871  GTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKPEFDNVFRYELDDENWRPNYMLP 930

Query: 2200 EAVEDLKTIREIRSVFDAEVQKLEADRLLLGSEIATTGDNTWPLPVNIKRLISNAQKTFK 2021
            E V+DLKTIRE R+VF+AEVQKLEADR  LGSEI TTGDN+WP+PVN+KRLI NAQKTFK
Sbjct: 931  EHVDDLKTIREFRNVFEAEVQKLEADRYQLGSEITTTGDNSWPMPVNLKRLIWNAQKTFK 990

Query: 2020 IDFRRPSDMHPLQIVEFVDKLQERLKVVHGDDYLSKEAQKNATLFFNILLRSSLASKRVL 1841
            IDFRRPSDMHP++IVE +DKLQERLKVV GDD +S EAQKNATLFFNILLRS+ ASKRVL
Sbjct: 991  IDFRRPSDMHPMEIVEAIDKLQERLKVVPGDDAMSIEAQKNATLFFNILLRSTFASKRVL 1050

Query: 1840 KDYRLTQEAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK 1661
            K+YRLT+EAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK
Sbjct: 1051 KEYRLTKEAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK 1110

Query: 1660 NVTLGVPRLREIINVAKKIKTPSLSVYLKPEVSRAKERAKSVQCALEYTTLRSVTHATEV 1481
            NVTLGVPRLREIINVAKKIKTPSLSVYLKP+V++ KE AK+VQCALEYTTLRSVTHATE+
Sbjct: 1111 NVTLGVPRLREIINVAKKIKTPSLSVYLKPQVNQKKELAKNVQCALEYTTLRSVTHATEI 1170

Query: 1480 WYDPDPMSTIIPEDVEFVKSYYEMPDEEIDPDKISPWLLRIELNREMMVDKKLSMADIAE 1301
            WYDPDP+ TII ED EFV+SYYEMPDE+IDPDKISPWLLRIELNREMMVDKKLSMADIAE
Sbjct: 1171 WYDPDPLGTIIEEDTEFVQSYYEMPDEDIDPDKISPWLLRIELNREMMVDKKLSMADIAE 1230

Query: 1300 KINLEFDDDLTCIFNDDNADKLILRIRIMNDEAPKGELNDES-EDDVFLKKIESNMLTEM 1124
            KIN EFDDDL+CIFNDDNADKLILRIRI NDEAPKGE+ DES EDDVFLKKIE NMLTEM
Sbjct: 1231 KINREFDDDLSCIFNDDNADKLILRIRITNDEAPKGEIQDESAEDDVFLKKIEGNMLTEM 1290

Query: 1123 ALRGIPDINKVFIKNTKVNKFNQEEGFRADNEWMLDTEGVNLLAVMCHEDVDAKRTTSNH 944
            ALRGIPDINKVFIK  KVN F Q++GF+A NEWMLDTEGVNLLAVMCHEDVDA RTTSNH
Sbjct: 1291 ALRGIPDINKVFIKEGKVNTFYQDDGFKAANEWMLDTEGVNLLAVMCHEDVDATRTTSNH 1350

Query: 943  LIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINR 764
            LIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINR
Sbjct: 1351 LIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINR 1410

Query: 763  NDTGPLMRCSFEETVDILLDAAVFAETDHLRGVTENIMLGQLAPIGTGDCGLLLNEEMLK 584
            NDTGPLMRCSFEETVDILLDAAV+AE+DHLRGVTENIMLGQLAPIGTG C L LN++ML+
Sbjct: 1411 NDTGPLMRCSFEETVDILLDAAVYAESDHLRGVTENIMLGQLAPIGTGGCALYLNDQMLQ 1470

Query: 583  QAIEIPLPSYMEGNLEFGMTPGRSPITGTPYHEGMMSPSYLLSPNVRLSPA-SDAQFSPY 407
            QAIE+ LPSY+EG L+FGMTP RSPITGTPYHEGMMSPSYLLSPN+R SP  +DA FSPY
Sbjct: 1471 QAIELQLPSYVEG-LDFGMTPARSPITGTPYHEGMMSPSYLLSPNIRASPINTDASFSPY 1529

Query: 406  VSGMAF 389
            V  MAF
Sbjct: 1530 VGHMAF 1535


>ref|XP_004512182.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Cicer
            arietinum]
          Length = 1834

 Score = 1380 bits (3572), Expect = 0.0
 Identities = 689/785 (87%), Positives = 740/785 (94%), Gaps = 1/785 (0%)
 Frame = -1

Query: 2740 QKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFVDRTLPHFLKEDLG 2561
            QKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIP+GF+DRTLPHF K+D G
Sbjct: 752  QKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYG 811

Query: 2560 PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 2381
            PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD
Sbjct: 812  PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 871

Query: 2380 GTVRNSLGDVIQFLYGEDGMDAVWIESQKLEALKVKKSEFDDMFKYEIDDPTWQPDYMHP 2201
            GTVRNSLGDVIQFLYGEDGMDAVWIE+QKL++LK+KK++FD  F+YE DD  W+P YM  
Sbjct: 872  GTVRNSLGDVIQFLYGEDGMDAVWIETQKLDSLKMKKADFDRAFRYEFDDENWKPTYMLE 931

Query: 2200 EAVEDLKTIREIRSVFDAEVQKLEADRLLLGSEIATTGDNTWPLPVNIKRLISNAQKTFK 2021
            E VEDLKTIRE R+VF+AEVQKL+ADR  L +EIATTGD++ PLPVN+KRLI NAQKTFK
Sbjct: 932  EPVEDLKTIREFRNVFEAEVQKLDADRFQLATEIATTGDSSLPLPVNLKRLIWNAQKTFK 991

Query: 2020 IDFRRPSDMHPLQIVEFVDKLQERLKVVHGDDYLSKEAQKNATLFFNILLRSSLASKRVL 1841
            +DFRRPSDMHP++IVE +DKLQERLKVV GDD LS+EAQKNATL FNILLRS+ ASKRVL
Sbjct: 992  VDFRRPSDMHPMEIVEAIDKLQERLKVVPGDDLLSQEAQKNATLLFNILLRSTFASKRVL 1051

Query: 1840 KDYRLTQEAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK 1661
            ++YRL++EAFEWV+GEIESRFLQSLVA GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK
Sbjct: 1052 EEYRLSREAFEWVVGEIESRFLQSLVASGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK 1111

Query: 1660 NVTLGVPRLREIINVAKKIKTPSLSVYLKPEVSRAKERAKSVQCALEYTTLRSVTHATEV 1481
            NVTLGVPRLREIINVAK+IKTPSLSVYLKPEV + KERAKSVQCALEYTTLRSVT ATEV
Sbjct: 1112 NVTLGVPRLREIINVAKRIKTPSLSVYLKPEVCKTKERAKSVQCALEYTTLRSVTQATEV 1171

Query: 1480 WYDPDPMSTIIPEDVEFVKSYYEMPDEEIDPDKISPWLLRIELNREMMVDKKLSMADIAE 1301
            WYDPDPMSTII EDV+FVKSYYEMPDEE+  +KISPWLLRIELNREMMVDKKLSMADIAE
Sbjct: 1172 WYDPDPMSTIIEEDVDFVKSYYEMPDEEVALEKISPWLLRIELNREMMVDKKLSMADIAE 1231

Query: 1300 KINLEFDDDLTCIFNDDNADKLILRIRIMNDEAPKGELNDES-EDDVFLKKIESNMLTEM 1124
            KINLEFDDDLTCIFNDDNA+KLILRIRIMNDEAPKGE+ DES EDDVFLKKIESNMLTEM
Sbjct: 1232 KINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGEIQDESAEDDVFLKKIESNMLTEM 1291

Query: 1123 ALRGIPDINKVFIKNTKVNKFNQEEGFRADNEWMLDTEGVNLLAVMCHEDVDAKRTTSNH 944
             LRGI DINKVFIKNTK+ KF++ EGF+   EWMLDTEGVNLLAVMCHEDVDAKRTTSNH
Sbjct: 1292 TLRGIADINKVFIKNTKIQKFDENEGFKPYEEWMLDTEGVNLLAVMCHEDVDAKRTTSNH 1351

Query: 943  LIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINR 764
            LIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINR
Sbjct: 1352 LIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINR 1411

Query: 763  NDTGPLMRCSFEETVDILLDAAVFAETDHLRGVTENIMLGQLAPIGTGDCGLLLNEEMLK 584
            NDTGP+MRCSFEETVDILLDAAV+AETD+LRGVTENIMLGQLAPIGTG+C LLLN+EMLK
Sbjct: 1412 NDTGPMMRCSFEETVDILLDAAVYAETDYLRGVTENIMLGQLAPIGTGECALLLNDEMLK 1471

Query: 583  QAIEIPLPSYMEGNLEFGMTPGRSPITGTPYHEGMMSPSYLLSPNVRLSPASDAQFSPYV 404
             AIE+ LPSYMEG L+FGMTPGRSPI+ TPYHEG+MSPSYLLSPN+RLSP +DAQFSPYV
Sbjct: 1472 NAIELQLPSYMEG-LDFGMTPGRSPISATPYHEGLMSPSYLLSPNLRLSPTNDAQFSPYV 1530

Query: 403  SGMAF 389
             GMAF
Sbjct: 1531 GGMAF 1535


>gb|ESW29856.1| hypothetical protein PHAVU_002G104500g [Phaseolus vulgaris]
          Length = 1834

 Score = 1379 bits (3570), Expect = 0.0
 Identities = 687/785 (87%), Positives = 740/785 (94%), Gaps = 1/785 (0%)
 Frame = -1

Query: 2740 QKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFVDRTLPHFLKEDLG 2561
            QKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGF+DRTLPHF K+D G
Sbjct: 752  QKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFIDRTLPHFTKDDYG 811

Query: 2560 PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 2381
            PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD
Sbjct: 812  PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 871

Query: 2380 GTVRNSLGDVIQFLYGEDGMDAVWIESQKLEALKVKKSEFDDMFKYEIDDPTWQPDYMHP 2201
            GTVRNSLGDVIQFLYGEDGMDAVWIE+QKL++LK+KK+EFD +F+YE DD  W+P YM  
Sbjct: 872  GTVRNSLGDVIQFLYGEDGMDAVWIETQKLDSLKMKKTEFDRVFRYEFDDENWKPTYMLE 931

Query: 2200 EAVEDLKTIREIRSVFDAEVQKLEADRLLLGSEIATTGDNTWPLPVNIKRLISNAQKTFK 2021
            E VEDLKTIRE R+VF+AEVQKLEADR  L +EIATTGD++ PLPVN+KRLI NAQKTFK
Sbjct: 932  EPVEDLKTIREFRNVFEAEVQKLEADRYQLATEIATTGDSSLPLPVNLKRLIWNAQKTFK 991

Query: 2020 IDFRRPSDMHPLQIVEFVDKLQERLKVVHGDDYLSKEAQKNATLFFNILLRSSLASKRVL 1841
            +DFRRPSDMHP++IVE +DKLQERL+VV G+D LS+EAQKNATL FNILLRS+ ASKRVL
Sbjct: 992  VDFRRPSDMHPMEIVEAIDKLQERLRVVPGEDLLSQEAQKNATLLFNILLRSTFASKRVL 1051

Query: 1840 KDYRLTQEAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK 1661
            ++YRL++EAFEWV+GEIESRFLQSLVA GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK
Sbjct: 1052 EEYRLSREAFEWVVGEIESRFLQSLVASGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK 1111

Query: 1660 NVTLGVPRLREIINVAKKIKTPSLSVYLKPEVSRAKERAKSVQCALEYTTLRSVTHATEV 1481
            NVTLGVPRLREIINVAK+IKTPSLSVYL P+V + KERAKSVQCALEYTTLRSVT ATEV
Sbjct: 1112 NVTLGVPRLREIINVAKRIKTPSLSVYLNPDVGKTKERAKSVQCALEYTTLRSVTQATEV 1171

Query: 1480 WYDPDPMSTIIPEDVEFVKSYYEMPDEEIDPDKISPWLLRIELNREMMVDKKLSMADIAE 1301
            WYDP+PMSTII EDV+FVKSYYEMPDEE+  +KISPWLLRIELNREMMVDKKLSMADIAE
Sbjct: 1172 WYDPEPMSTIIDEDVDFVKSYYEMPDEEVALEKISPWLLRIELNREMMVDKKLSMADIAE 1231

Query: 1300 KINLEFDDDLTCIFNDDNADKLILRIRIMNDEAPKGELNDES-EDDVFLKKIESNMLTEM 1124
            KINLEFDDDLTCIFNDDNA+KLILRIRIMNDEAPKGE+ DES EDDVFLKKIESNMLTEM
Sbjct: 1232 KINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGEIQDESAEDDVFLKKIESNMLTEM 1291

Query: 1123 ALRGIPDINKVFIKNTKVNKFNQEEGFRADNEWMLDTEGVNLLAVMCHEDVDAKRTTSNH 944
             LRGIPDINKVFIKNTKV KF++ EGF+ + EWMLDTEGVNLLAVMCHEDVDA RTTSNH
Sbjct: 1292 TLRGIPDINKVFIKNTKVQKFDESEGFKPNEEWMLDTEGVNLLAVMCHEDVDATRTTSNH 1351

Query: 943  LIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINR 764
            LIEVIEVLGIEAVRR+LLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINR
Sbjct: 1352 LIEVIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINR 1411

Query: 763  NDTGPLMRCSFEETVDILLDAAVFAETDHLRGVTENIMLGQLAPIGTGDCGLLLNEEMLK 584
            NDTGP+MRCSFEETVDILLDAAV+AETDHLRGVTENIMLGQLAPIGTG+C L LN+EMLK
Sbjct: 1412 NDTGPMMRCSFEETVDILLDAAVYAETDHLRGVTENIMLGQLAPIGTGECALYLNDEMLK 1471

Query: 583  QAIEIPLPSYMEGNLEFGMTPGRSPITGTPYHEGMMSPSYLLSPNVRLSPASDAQFSPYV 404
             AIE+ LPSYM+G L+FGMTP RSPI+GTPYHEG+MSPSYLLSPN+RLSP SDAQFSPYV
Sbjct: 1472 NAIELQLPSYMDG-LDFGMTPARSPISGTPYHEGLMSPSYLLSPNLRLSPTSDAQFSPYV 1530

Query: 403  SGMAF 389
             GMAF
Sbjct: 1531 GGMAF 1535


>gb|EOX90745.1| DNA-directed RNA polymerase II subunit RPB1 isoform 5 [Theobroma
            cacao]
          Length = 1512

 Score = 1379 bits (3568), Expect = 0.0
 Identities = 686/786 (87%), Positives = 743/786 (94%), Gaps = 2/786 (0%)
 Frame = -1

Query: 2740 QKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFVDRTLPHFLKEDLG 2561
            QKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIP+GF+DRTLPHF K+D G
Sbjct: 402  QKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYG 461

Query: 2560 PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 2381
            PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD
Sbjct: 462  PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 521

Query: 2380 GTVRNSLGDVIQFLYGEDGMDAVWIESQKLEALKVKKSEFDDMFKYEIDDPTWQP-DYMH 2204
            GTVRNSLGDVIQFLYGEDGMD+VWIESQKL++LK+KKSEFD +F+Y IDD +W P  YM 
Sbjct: 522  GTVRNSLGDVIQFLYGEDGMDSVWIESQKLDSLKMKKSEFDRVFRYNIDDESWNPTSYML 581

Query: 2203 PEAVEDLKTIREIRSVFDAEVQKLEADRLLLGSEIATTGDNTWPLPVNIKRLISNAQKTF 2024
            PE +EDL+TI+E+R VF+AEVQKL+ADR  LG+EIA TGD+ WPLPVN+KRLI NAQKTF
Sbjct: 582  PEHIEDLRTIQELRDVFEAEVQKLDADRYQLGTEIAVTGDSNWPLPVNLKRLIWNAQKTF 641

Query: 2023 KIDFRRPSDMHPLQIVEFVDKLQERLKVVHGDDYLSKEAQKNATLFFNILLRSSLASKRV 1844
            K+DFRR SD+HP++IV+ VDKLQERLKVV G D LS EAQKNATLFF+ILLRS+LASKRV
Sbjct: 642  KVDFRRVSDLHPVEIVDSVDKLQERLKVVPGTDPLSVEAQKNATLFFSILLRSTLASKRV 701

Query: 1843 LKDYRLTQEAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSA 1664
            L++YRLT+EAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSA
Sbjct: 702  LQEYRLTKEAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSA 761

Query: 1663 KNVTLGVPRLREIINVAKKIKTPSLSVYLKPEVSRAKERAKSVQCALEYTTLRSVTHATE 1484
            KNVTLGVPRLREIINVAKKIKTPSLSVYL PE S+ KE+AK+VQCALEYTTLRSVTHATE
Sbjct: 762  KNVTLGVPRLREIINVAKKIKTPSLSVYLSPEASKTKEKAKNVQCALEYTTLRSVTHATE 821

Query: 1483 VWYDPDPMSTIIPEDVEFVKSYYEMPDEEIDPDKISPWLLRIELNREMMVDKKLSMADIA 1304
            VWYDPDP STII ED++FVKSYYEMPDEE+ P+KISPWLLRIELNREMMVDKKLSMADIA
Sbjct: 822  VWYDPDPTSTIIEEDIDFVKSYYEMPDEEVAPEKISPWLLRIELNREMMVDKKLSMADIA 881

Query: 1303 EKINLEFDDDLTCIFNDDNADKLILRIRIMNDEAPKGELNDES-EDDVFLKKIESNMLTE 1127
            EKINLEFDDDLTCIFNDDNA+KLILRIRIMNDE PKGELNDES EDDVFLKKIESNMLTE
Sbjct: 882  EKINLEFDDDLTCIFNDDNAEKLILRIRIMNDEGPKGELNDESAEDDVFLKKIESNMLTE 941

Query: 1126 MALRGIPDINKVFIKNTKVNKFNQEEGFRADNEWMLDTEGVNLLAVMCHEDVDAKRTTSN 947
            MALRGIPDINKVFIK++K +KF++ +G++   EW+LDTEGVNLLAVMCHEDVDA+RTTSN
Sbjct: 942  MALRGIPDINKVFIKHSKASKFDEADGYKTGEEWVLDTEGVNLLAVMCHEDVDARRTTSN 1001

Query: 946  HLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGIN 767
            HLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGIN
Sbjct: 1002 HLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGIN 1061

Query: 766  RNDTGPLMRCSFEETVDILLDAAVFAETDHLRGVTENIMLGQLAPIGTGDCGLLLNEEML 587
            RNDTGP+MRCSFEETVDILLDAAV+AE+D+LRGVTENIMLGQLAPIGTGDC L LN+EML
Sbjct: 1062 RNDTGPMMRCSFEETVDILLDAAVYAESDYLRGVTENIMLGQLAPIGTGDCALYLNDEML 1121

Query: 586  KQAIEIPLPSYMEGNLEFGMTPGRSPITGTPYHEGMMSPSYLLSPNVRLSPASDAQFSPY 407
            K AIE+ LPSYMEG LEFGMTP RSP++GTPYHEGMMSPSYLLSPN+RLSP +DAQFSPY
Sbjct: 1122 KNAIELQLPSYMEG-LEFGMTPARSPVSGTPYHEGMMSPSYLLSPNLRLSPITDAQFSPY 1180

Query: 406  VSGMAF 389
            V GMAF
Sbjct: 1181 VGGMAF 1186


>gb|EOX90744.1| DNA-directed RNA polymerase II subunit RPB1 isoform 4 [Theobroma
            cacao]
          Length = 1511

 Score = 1379 bits (3568), Expect = 0.0
 Identities = 686/786 (87%), Positives = 743/786 (94%), Gaps = 2/786 (0%)
 Frame = -1

Query: 2740 QKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFVDRTLPHFLKEDLG 2561
            QKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIP+GF+DRTLPHF K+D G
Sbjct: 402  QKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYG 461

Query: 2560 PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 2381
            PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD
Sbjct: 462  PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 521

Query: 2380 GTVRNSLGDVIQFLYGEDGMDAVWIESQKLEALKVKKSEFDDMFKYEIDDPTWQP-DYMH 2204
            GTVRNSLGDVIQFLYGEDGMD+VWIESQKL++LK+KKSEFD +F+Y IDD +W P  YM 
Sbjct: 522  GTVRNSLGDVIQFLYGEDGMDSVWIESQKLDSLKMKKSEFDRVFRYNIDDESWNPTSYML 581

Query: 2203 PEAVEDLKTIREIRSVFDAEVQKLEADRLLLGSEIATTGDNTWPLPVNIKRLISNAQKTF 2024
            PE +EDL+TI+E+R VF+AEVQKL+ADR  LG+EIA TGD+ WPLPVN+KRLI NAQKTF
Sbjct: 582  PEHIEDLRTIQELRDVFEAEVQKLDADRYQLGTEIAVTGDSNWPLPVNLKRLIWNAQKTF 641

Query: 2023 KIDFRRPSDMHPLQIVEFVDKLQERLKVVHGDDYLSKEAQKNATLFFNILLRSSLASKRV 1844
            K+DFRR SD+HP++IV+ VDKLQERLKVV G D LS EAQKNATLFF+ILLRS+LASKRV
Sbjct: 642  KVDFRRVSDLHPVEIVDSVDKLQERLKVVPGTDPLSVEAQKNATLFFSILLRSTLASKRV 701

Query: 1843 LKDYRLTQEAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSA 1664
            L++YRLT+EAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSA
Sbjct: 702  LQEYRLTKEAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSA 761

Query: 1663 KNVTLGVPRLREIINVAKKIKTPSLSVYLKPEVSRAKERAKSVQCALEYTTLRSVTHATE 1484
            KNVTLGVPRLREIINVAKKIKTPSLSVYL PE S+ KE+AK+VQCALEYTTLRSVTHATE
Sbjct: 762  KNVTLGVPRLREIINVAKKIKTPSLSVYLSPEASKTKEKAKNVQCALEYTTLRSVTHATE 821

Query: 1483 VWYDPDPMSTIIPEDVEFVKSYYEMPDEEIDPDKISPWLLRIELNREMMVDKKLSMADIA 1304
            VWYDPDP STII ED++FVKSYYEMPDEE+ P+KISPWLLRIELNREMMVDKKLSMADIA
Sbjct: 822  VWYDPDPTSTIIEEDIDFVKSYYEMPDEEVAPEKISPWLLRIELNREMMVDKKLSMADIA 881

Query: 1303 EKINLEFDDDLTCIFNDDNADKLILRIRIMNDEAPKGELNDES-EDDVFLKKIESNMLTE 1127
            EKINLEFDDDLTCIFNDDNA+KLILRIRIMNDE PKGELNDES EDDVFLKKIESNMLTE
Sbjct: 882  EKINLEFDDDLTCIFNDDNAEKLILRIRIMNDEGPKGELNDESAEDDVFLKKIESNMLTE 941

Query: 1126 MALRGIPDINKVFIKNTKVNKFNQEEGFRADNEWMLDTEGVNLLAVMCHEDVDAKRTTSN 947
            MALRGIPDINKVFIK++K +KF++ +G++   EW+LDTEGVNLLAVMCHEDVDA+RTTSN
Sbjct: 942  MALRGIPDINKVFIKHSKASKFDEADGYKTGEEWVLDTEGVNLLAVMCHEDVDARRTTSN 1001

Query: 946  HLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGIN 767
            HLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGIN
Sbjct: 1002 HLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGIN 1061

Query: 766  RNDTGPLMRCSFEETVDILLDAAVFAETDHLRGVTENIMLGQLAPIGTGDCGLLLNEEML 587
            RNDTGP+MRCSFEETVDILLDAAV+AE+D+LRGVTENIMLGQLAPIGTGDC L LN+EML
Sbjct: 1062 RNDTGPMMRCSFEETVDILLDAAVYAESDYLRGVTENIMLGQLAPIGTGDCALYLNDEML 1121

Query: 586  KQAIEIPLPSYMEGNLEFGMTPGRSPITGTPYHEGMMSPSYLLSPNVRLSPASDAQFSPY 407
            K AIE+ LPSYMEG LEFGMTP RSP++GTPYHEGMMSPSYLLSPN+RLSP +DAQFSPY
Sbjct: 1122 KNAIELQLPSYMEG-LEFGMTPARSPVSGTPYHEGMMSPSYLLSPNLRLSPITDAQFSPY 1180

Query: 406  VSGMAF 389
            V GMAF
Sbjct: 1181 VGGMAF 1186


>gb|EOX90741.1| DNA-directed RNA polymerase II subunit RPB1 isoform 1 [Theobroma
            cacao] gi|508698846|gb|EOX90742.1| DNA-directed RNA
            polymerase II subunit RPB1 isoform 1 [Theobroma cacao]
            gi|508698847|gb|EOX90743.1| DNA-directed RNA polymerase
            II subunit RPB1 isoform 1 [Theobroma cacao]
          Length = 1861

 Score = 1379 bits (3568), Expect = 0.0
 Identities = 686/786 (87%), Positives = 743/786 (94%), Gaps = 2/786 (0%)
 Frame = -1

Query: 2740 QKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFVDRTLPHFLKEDLG 2561
            QKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIP+GF+DRTLPHF K+D G
Sbjct: 752  QKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYG 811

Query: 2560 PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 2381
            PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD
Sbjct: 812  PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 871

Query: 2380 GTVRNSLGDVIQFLYGEDGMDAVWIESQKLEALKVKKSEFDDMFKYEIDDPTWQP-DYMH 2204
            GTVRNSLGDVIQFLYGEDGMD+VWIESQKL++LK+KKSEFD +F+Y IDD +W P  YM 
Sbjct: 872  GTVRNSLGDVIQFLYGEDGMDSVWIESQKLDSLKMKKSEFDRVFRYNIDDESWNPTSYML 931

Query: 2203 PEAVEDLKTIREIRSVFDAEVQKLEADRLLLGSEIATTGDNTWPLPVNIKRLISNAQKTF 2024
            PE +EDL+TI+E+R VF+AEVQKL+ADR  LG+EIA TGD+ WPLPVN+KRLI NAQKTF
Sbjct: 932  PEHIEDLRTIQELRDVFEAEVQKLDADRYQLGTEIAVTGDSNWPLPVNLKRLIWNAQKTF 991

Query: 2023 KIDFRRPSDMHPLQIVEFVDKLQERLKVVHGDDYLSKEAQKNATLFFNILLRSSLASKRV 1844
            K+DFRR SD+HP++IV+ VDKLQERLKVV G D LS EAQKNATLFF+ILLRS+LASKRV
Sbjct: 992  KVDFRRVSDLHPVEIVDSVDKLQERLKVVPGTDPLSVEAQKNATLFFSILLRSTLASKRV 1051

Query: 1843 LKDYRLTQEAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSA 1664
            L++YRLT+EAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSA
Sbjct: 1052 LQEYRLTKEAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSA 1111

Query: 1663 KNVTLGVPRLREIINVAKKIKTPSLSVYLKPEVSRAKERAKSVQCALEYTTLRSVTHATE 1484
            KNVTLGVPRLREIINVAKKIKTPSLSVYL PE S+ KE+AK+VQCALEYTTLRSVTHATE
Sbjct: 1112 KNVTLGVPRLREIINVAKKIKTPSLSVYLSPEASKTKEKAKNVQCALEYTTLRSVTHATE 1171

Query: 1483 VWYDPDPMSTIIPEDVEFVKSYYEMPDEEIDPDKISPWLLRIELNREMMVDKKLSMADIA 1304
            VWYDPDP STII ED++FVKSYYEMPDEE+ P+KISPWLLRIELNREMMVDKKLSMADIA
Sbjct: 1172 VWYDPDPTSTIIEEDIDFVKSYYEMPDEEVAPEKISPWLLRIELNREMMVDKKLSMADIA 1231

Query: 1303 EKINLEFDDDLTCIFNDDNADKLILRIRIMNDEAPKGELNDES-EDDVFLKKIESNMLTE 1127
            EKINLEFDDDLTCIFNDDNA+KLILRIRIMNDE PKGELNDES EDDVFLKKIESNMLTE
Sbjct: 1232 EKINLEFDDDLTCIFNDDNAEKLILRIRIMNDEGPKGELNDESAEDDVFLKKIESNMLTE 1291

Query: 1126 MALRGIPDINKVFIKNTKVNKFNQEEGFRADNEWMLDTEGVNLLAVMCHEDVDAKRTTSN 947
            MALRGIPDINKVFIK++K +KF++ +G++   EW+LDTEGVNLLAVMCHEDVDA+RTTSN
Sbjct: 1292 MALRGIPDINKVFIKHSKASKFDEADGYKTGEEWVLDTEGVNLLAVMCHEDVDARRTTSN 1351

Query: 946  HLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGIN 767
            HLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGIN
Sbjct: 1352 HLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGIN 1411

Query: 766  RNDTGPLMRCSFEETVDILLDAAVFAETDHLRGVTENIMLGQLAPIGTGDCGLLLNEEML 587
            RNDTGP+MRCSFEETVDILLDAAV+AE+D+LRGVTENIMLGQLAPIGTGDC L LN+EML
Sbjct: 1412 RNDTGPMMRCSFEETVDILLDAAVYAESDYLRGVTENIMLGQLAPIGTGDCALYLNDEML 1471

Query: 586  KQAIEIPLPSYMEGNLEFGMTPGRSPITGTPYHEGMMSPSYLLSPNVRLSPASDAQFSPY 407
            K AIE+ LPSYMEG LEFGMTP RSP++GTPYHEGMMSPSYLLSPN+RLSP +DAQFSPY
Sbjct: 1472 KNAIELQLPSYMEG-LEFGMTPARSPVSGTPYHEGMMSPSYLLSPNLRLSPITDAQFSPY 1530

Query: 406  VSGMAF 389
            V GMAF
Sbjct: 1531 VGGMAF 1536