BLASTX nr result
ID: Catharanthus22_contig00002171
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus22_contig00002171
(4904 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA11674.1| unnamed protein product [Nicotiana tabacum] 312 0.0
emb|CAN75440.1| hypothetical protein VITISV_007304 [Vitis vinifera] 250 0.0
emb|CAN66323.1| hypothetical protein VITISV_007384 [Vitis vinifera] 227 0.0
gb|AER13172.1| putative gag/pol polyprotein [Phaseolus vulgaris] 300 0.0
emb|CAN77602.1| hypothetical protein VITISV_024474 [Vitis vinifera] 207 0.0
emb|CAN61554.1| hypothetical protein VITISV_028479 [Vitis vinifera] 181 e-166
sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol poly... 247 e-151
emb|CAN65406.1| hypothetical protein VITISV_030853 [Vitis vinifera] 236 e-151
gb|AAK29467.1| polyprotein-like [Solanum chilense] 233 e-142
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118... 210 e-113
gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa] 207 e-111
gb|AAV88069.1| hypothetical retrotransposon [Ipomoea batatas] 305 e-110
emb|CAN67644.1| hypothetical protein VITISV_028829 [Vitis vinifera] 189 e-109
emb|CAN80131.1| hypothetical protein VITISV_012432 [Vitis vinifera] 177 e-105
emb|CAN61851.1| hypothetical protein VITISV_036278 [Vitis vinifera] 162 e-105
emb|CAN74160.1| hypothetical protein VITISV_018405 [Vitis vinifera] 234 e-103
emb|CAN59934.1| hypothetical protein VITISV_001876 [Vitis vinifera] 163 e-102
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group] 196 e-102
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-... 196 e-101
gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group] 194 4e-98
>dbj|BAA11674.1| unnamed protein product [Nicotiana tabacum]
Length = 1338
Score = 312 bits (800), Expect(8) = 0.0
Identities = 154/230 (66%), Positives = 189/230 (82%)
Frame = +3
Query: 3186 EGKTALKNR*VYRLKHEEHSSHPQYKYILVV*GFSQRRCVEFSKIFSPVEKMSSIRIVLV 3365
+GK ALKN+ V+++KH+EH+S P++K LVV GF+QR+ ++F +IFSPV KM+SIR VL
Sbjct: 851 KGKRALKNKWVFKMKHDEHNSLPRFKARLVVKGFNQRKGIDFDEIFSPVVKMTSIRTVLG 910
Query: 3366 LAISPNIKIEQMDVKTTFFHGDLEEEIYTEQSEGFQVKGKEDYVCRLKKICYGLKQALR* 3545
LA S N+++EQMDVKT F HGDLEEEIY EQ +GFQ KGKEDYVCRL+K YGLKQA R
Sbjct: 911 LAASLNLEVEQMDVKTAFLHGDLEEEIYMEQPDGFQQKGKEDYVCRLRKSLYGLKQAPRQ 970
Query: 3546 WYKKFRSVMSKQGYRKTTSDHCVFVQKFSVDAFIILSLYVVDMLIVGKNIEMIDRLKQEL 3725
WYKKF SVM + GY+KTTSDHCVF QKFS D FIIL LYV DMLIVG+N+ I+ LK++L
Sbjct: 971 WYKKFESVMGQHGYKKTTSDHCVFAQKFSDDDFIILLLYVDDMLIVGRNVSRINSLKEQL 1030
Query: 3726 NKSFVIKDLGPAK*IFGVKISRDRKAMKLWLSQENYIQKVLQRFRMDKSK 3875
+K F +KDLGPAK I G++I RDR+A KLWLSQE YI+KVLQRF M+K+K
Sbjct: 1031 SKFFAMKDLGPAKQILGMRIMRDREAKKLWLSQEKYIEKVLQRFNMEKTK 1080
Score = 228 bits (581), Expect(8) = 0.0
Identities = 126/288 (43%), Positives = 177/288 (61%), Gaps = 5/288 (1%)
Frame = +1
Query: 1492 TTTLEDLLIVYDERVIHYTSHDTN*VADIGVALHATAKKEFFPSYTPSDYRILRMGNISM 1671
T + + +VYD+ +I+ T+ + V D G +HAT ++E F SYT D+ ++MGN +
Sbjct: 268 TNSFGEFNVVYDDDIINLTTQEMTWVIDSGATIHATPRRELFSSYTLGDFGRVKMGNANF 327
Query: 1672 SKVIGIDNIYLRISNNSQLLLPDVSHAPILVEFYFSWET***WLR-----NSFDGEIRKL 1836
S V+G ++ L N +LLL DV H P + S + L N+F KL
Sbjct: 328 STVVGKGDVCLETMNGMKLLLRDVRHVPDMRLNLISVDK----LDEEGYCNTFHNGQWKL 383
Query: 1837 SKGSFIVARGKKYYNLYLMQASISSGSVHVMDCKYSTNL*HKRLNHISEKCLCYLIQIKV 2016
+KGS +VARG K LY+ QASIS ++V + + L H+RL H+SEK + L++
Sbjct: 384 TKGSLMVARGTKQSKLYVTQASISQQVINVAENDSNIKLWHRRLGHMSEKSMARLVKKNA 443
Query: 2017 ISLVSTTKLEQCAHCLAGKKTQVSFKTNPPSRKLKLLELIHSDVCDPFEVQSLGGVSYLV 2196
+ ++ +L++CA CLAGK+ +VSFK PPSR+ +L+L+HSDVC PF+ +SLGG Y V
Sbjct: 444 LPGLNQIQLKKCADCLAGKQNRVSFKRFPPSRRQNVLDLVHSDVCGPFK-KSLGGARYFV 502
Query: 2197 TFIDDHSRKL*IYPLKTKDQALEKFKQFQASFEREIENKIKCIRVDNG 2340
TFIDDHSRK +Y LKTKDQ + FKQF ERE K+KCIR DNG
Sbjct: 503 TFIDDHSRKTWVYTLKTKDQVFQVFKQFLTLVERETGKKLKCIRTDNG 550
Score = 169 bits (428), Expect(8) = 0.0
Identities = 90/172 (52%), Positives = 117/172 (68%), Gaps = 10/172 (5%)
Frame = +3
Query: 2346 YCGPFD*YCKQQGIRHQ----KTP*LNGLAERMNRTIVKRVQCLLLEAEFLSPFGVKL*I 2513
Y G FD YCK+ GIRHQ KTP LNGLAERMNRT+++R +CLL ++ F
Sbjct: 553 YQGQFDAYCKEHGIRHQFTPPKTPQLNGLAERMNRTLIERTRCLLSHSKLPKAFWG---- 608
Query: 2514 QLFMSSIYLLLFL-CMEILQRS-----FG*EASYDYLRGFGCKVYIHVPKDEKSKLDSKT 2675
+ +++ Y+L C+ + ++ G + SYD LR FGCK Y+HVPKDE+SKLD KT
Sbjct: 609 EALVTAAYVLNHSPCVPLQYKAPEKIWLGRDISYDQLRVFGCKAYVHVPKDERSKLDVKT 668
Query: 2676 RQCVFLGYGQDEFRYRLYDPVVKKLVRSRDVIFFEDQIIDDFEKV*KAGSES 2831
R+CVF+GYGQD Y+ YDPV KKLVRSRDV+F EDQ I+D +KV K+ +S
Sbjct: 669 RECVFIGYGQDMLGYKFYDPVEKKLVRSRDVVFVEDQTIEDIDKVEKSTDDS 720
Score = 162 bits (410), Expect(8) = 0.0
Identities = 79/144 (54%), Positives = 106/144 (73%), Gaps = 2/144 (1%)
Frame = +3
Query: 825 PEPKCDKEWEFEHKQVCAYIRSWVEENVRNHIANSTNAQVLWEKFENMYASKTGKNKLFC 1004
PE K D++WEFEH QVC YIR +VE+NV NHI+ T+A+ LW+K E +YASKTG NKLF
Sbjct: 42 PEDKSDEDWEFEHNQVCGYIRQFVEDNVYNHISGVTHARSLWDKLEELYASKTGNNKLFY 101
Query: 1005 L--IITLRYKEGTTVMDYVNKF*GFVDQLSNVGVVFEDEILGLWLLNTLSSSWETFPVSY 1178
L ++ ++Y EGTTV D++N+ G VDQLS +G+ F+DE+L L +L TL SWET VS
Sbjct: 102 LTKLMQVKYVEGTTVADHLNEIQGIVDQLSGMGIKFDDEVLALMVLATLPESWETLKVSI 161
Query: 1179 TNTAALVVMCLEYTKAGIPNEKVR 1250
TN+A V+ +E K+GI NE++R
Sbjct: 162 TNSAPNGVVNMETVKSGILNEEMR 185
Score = 73.2 bits (178), Expect(8) = 0.0
Identities = 45/104 (43%), Positives = 61/104 (58%), Gaps = 3/104 (2%)
Frame = +1
Query: 2890 SDPQTNEHDMDDIGTPNDDVTDMQPPTTVDLPKEPDEALFRRSTRVRQPSTRYAPNEFVL 3069
+D + NE + DD D+ QPP + P RS RV Q STRY+P+E+VL
Sbjct: 755 ADTEGNEDNGDDDA---DEEDQPQPPILNNPPYHT------RSGRVVQQSTRYSPHEYVL 805
Query: 3070 LAGGGEPECYEDAIESEQK---CNAMDDEMKSLFENHIFDLVRV 3192
L GGEP+ +E+AI+ E K AM DE+KSL EN F+LV++
Sbjct: 806 LTDGGEPDSFEEAIDDEHKEKWIEAMQDEIKSLHENKTFELVKL 849
Score = 43.5 bits (101), Expect(8) = 0.0
Identities = 22/63 (34%), Positives = 34/63 (53%)
Frame = +2
Query: 1295 RGRTKEKSQEGXXXXXXXXXXXYKDVE*HYCGKKGYIKRNCFKWKREKKNGSNSETKKDG 1474
RGR++ KSQ + +VE HYC KKG+IKR C +++ ++K + K +
Sbjct: 204 RGRSQNKSQSNRDKSRGKSNK-FANVECHYCKKKGHIKRFCRQFQNDQKKNKGKKVKPEE 262
Query: 1475 GSD 1483
SD
Sbjct: 263 SSD 265
Score = 24.3 bits (51), Expect(8) = 0.0
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = +1
Query: 766 KNEYLLFVKSFHLPVFES 819
K + LLFV HLPVF S
Sbjct: 22 KMKDLLFVTKMHLPVFSS 39
Score = 21.9 bits (45), Expect(8) = 0.0
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = +2
Query: 707 EWNNGRMIYLNGSNYYNRKGRM 772
E +M+ LNG+NY+ + +M
Sbjct: 2 EARTSKMVNLNGTNYHLWRNKM 23
Score = 92.0 bits (227), Expect(2) = 3e-29
Identities = 47/73 (64%), Positives = 54/73 (73%)
Frame = +2
Query: 3875 SWDVVSWQSLLHGFVALSITKAEFIAATEACKELVWIRKPLKELRYSQGKYVLHCDSLSA 4054
S VSWQS L VALS T+AEFIAATEACKEL+W++K L EL +SQ Y L CDS SA
Sbjct: 1202 SGGAVSWQSKLQKCVALSTTEAEFIAATEACKELIWMKKFLTELGFSQDGYQLFCDSQSA 1261
Query: 4055 IHLGKNPTFHFKS 4093
IHL KN +FH +S
Sbjct: 1262 IHLAKNASFHSRS 1274
Score = 67.4 bits (163), Expect(2) = 3e-29
Identities = 32/49 (65%), Positives = 35/49 (71%), Gaps = 1/49 (2%)
Frame = +1
Query: 4096 HIDVRYHWIHDVLNK-LADFEKFHTDNNGVDMLTKVLPRWKFEVCRSLA 4239
HIDVRY+WI DVL K + EK HTD NG DMLTK LP+ KFE CR A
Sbjct: 1276 HIDVRYNWIRDVLEKKMLRLEKIHTDENGSDMLTKTLPKGKFEFCREAA 1324
>emb|CAN75440.1| hypothetical protein VITISV_007304 [Vitis vinifera]
Length = 1362
Score = 250 bits (639), Expect(6) = 0.0
Identities = 133/231 (57%), Positives = 162/231 (70%)
Frame = +3
Query: 3186 EGKTALKNR*VYRLKHEEHSSHPQYKYILVV*GFSQRRCVEFSKIFSPVEKMSSIRIVLV 3365
+GK ALKNR VYR+K EEH+S P+YK LVV + V+ + F
Sbjct: 846 KGKRALKNRWVYRVKQEEHTSQPRYKARLVV------KRVQSKESF-------------- 885
Query: 3366 LAISPNIKIEQMDVKTTFFHGDLEEEIYTEQSEGFQVKGKEDYVCRLKKICYGLKQALR* 3545
+++I+QMDVKT F HGDL++EIY EQ EGF +KGKEDYVC+LKK YGLKQA R
Sbjct: 886 -----DLEIQQMDVKTAFLHGDLDKEIYMEQPEGFVLKGKEDYVCKLKKSLYGLKQAPRQ 940
Query: 3546 WYKKFRSVMSKQGYRKTTSDHCVFVQKFSVDAFIILSLYVVDMLIVGKNIEMIDRLKQEL 3725
WYKKF SVM +QGYRKTTSDHCVFVQKFS D F+IL LYV D+LIV +N+ ID LK++L
Sbjct: 941 WYKKFESVMGEQGYRKTTSDHCVFVQKFSDDDFVILLLYVDDILIVCRNVSRIDNLKKQL 1000
Query: 3726 NKSFVIKDLGPAK*IFGVKISRDRKAMKLWLSQENYIQKVLQRFRMDKSKV 3878
+KSF +KDLGP K I G++I RDR + KL + QE YI+KV RF M K KV
Sbjct: 1001 SKSFAMKDLGPVKRILGIRIERDRASKKLCMLQEQYIEKVFARFNMSKFKV 1051
Score = 233 bits (595), Expect(6) = 0.0
Identities = 123/283 (43%), Positives = 180/283 (63%), Gaps = 1/283 (0%)
Frame = +1
Query: 1495 TTLEDLLIVYDERVIHYTSHDTN*VADIGVALHATAKKEFFPSYTPSDYRILRMGNISMS 1674
TT+ D LIVYD V+++ ++ V D G ++HAT +K+FF SYT D+ +RMGN +
Sbjct: 248 TTISDFLIVYDSDVVNFACQESXWVIDXGASIHATPQKDFFTSYTSGDFGSVRMGNDGSA 307
Query: 1675 KVIGIDNIYLRISNNSQLLLPDVSHAP-ILVEFYFSWET***WLRNSFDGEIRKLSKGSF 1851
K IG+ ++ L SN + L L +V H P I + + + N+F KL++GS
Sbjct: 308 KAIGMGDVRLETSNGTMLTLKNVKHIPDIRMNLISTGKLDDEGFCNTFRDSQWKLTRGSM 367
Query: 1852 IVARGKKYYNLYLMQASISSGSVHVMDCKYSTNL*HKRLNHISEKCLCYLIQIKVISLVS 2031
++A+G K +LYLMQA + S++ +D + L H +L H+SEK L L + ++ +
Sbjct: 368 VIAKGNKSSSLYLMQARVIDSSINAVDDDSTFELWHNKLGHMSEKGLMILAKKNLLXGMK 427
Query: 2032 TTKLEQCAHCLAGKKTQVSFKTNPPSRKLKLLELIHSDVCDPFEVQSLGGVSYLVTFIDD 2211
L++CAHCLAGK+T+V+FKT +RK +L+L++SDV P + ++LGG Y VTFIDD
Sbjct: 428 KGSLKRCAHCLAGKQTRVAFKTLHHTRKPGMLDLVYSDVYGPMKTKTLGGSLYFVTFIDD 487
Query: 2212 HSRKL*IYPLKTKDQALEKFKQFQASFEREIENKIKCIRVDNG 2340
HSRK+ +Y LKTKDQ L+ FKQF A ER+ K+KCIR DNG
Sbjct: 488 HSRKIWVYTLKTKDQVLDVFKQFHALVERQSGEKLKCIRTDNG 530
Score = 162 bits (411), Expect(6) = 0.0
Identities = 86/160 (53%), Positives = 110/160 (68%), Gaps = 6/160 (3%)
Frame = +3
Query: 2346 YCGPFD*YCKQQGIRHQKTP*----LNGLAERMNRTIVKRVQCLLLEAEFLSPF-GVKL* 2510
Y GPFD YC+Q G RHQKTP LNGLAERMNRT+V+RV+CLL +++ F G L
Sbjct: 533 YSGPFDEYCRQHGFRHQKTPPKTPQLNGLAERMNRTLVERVRCLLSQSQLPRSFWGEALN 592
Query: 2511 IQLFMSSIYLLLFLCMEILQRSFG*-EASYDYLRGFGCKVYIHVPKDEKSKLDSKTRQCV 2687
+ + ++ + L ++ R + E SYD+LR FGCK ++H+PKDE+SKLD+KTR CV
Sbjct: 593 TIVHVLNLTPCVPLEFDVPDRIWSNNEISYDHLRVFGCKAFVHIPKDERSKLDAKTRPCV 652
Query: 2688 FLGYGQDEFRYRLYDPVVKKLVRSRDVIFFEDQIIDDFEK 2807
F+GYGQDE Y+ YD V KKL RS DV+F ED I D EK
Sbjct: 653 FIGYGQDELGYKFYDLVQKKLXRSXDVVFMEDHTIQDIEK 692
Score = 139 bits (351), Expect(6) = 0.0
Identities = 63/146 (43%), Positives = 96/146 (65%), Gaps = 2/146 (1%)
Frame = +3
Query: 825 PEPKCDKEWEFEHKQVCAYIRSWVEENVRNHIANSTNAQVLWEKFENMYASKTGKNKLFC 1004
PE K D EW H+QVC YIR WV++N NH++ + + W K E +YA KT NKLF
Sbjct: 20 PENKTDAEWNLLHRQVCGYIRXWVDDNXLNHVSEEKHXRSXWNKLEQLYARKTXNNKLFL 79
Query: 1005 L--IITLRYKEGTTVMDYVNKF*GFVDQLSNVGVVFEDEILGLWLLNTLSSSWETFPVSY 1178
+ +++L+Y++GT D++N F G ++QL+ + + FE+E+ GLWLL TL SWETF S
Sbjct: 80 IKKMMSLKYQDGTXXTDHLNTFQGIINQLAGMNIKFEEEVQGLWLLGTLPDSWETFRTSL 139
Query: 1179 TNTAALVVMCLEYTKAGIPNEKVRIK 1256
+N+A +M ++ K+ + NE++R K
Sbjct: 140 SNSAPDGIMNMDLVKSCVLNEEMRRK 165
Score = 90.5 bits (223), Expect(6) = 0.0
Identities = 52/116 (44%), Positives = 70/116 (60%), Gaps = 7/116 (6%)
Frame = +1
Query: 2866 VEGGTQTESDPQTNEHDMDDIGTPN----DDVTDMQPPTTVDLPKEPDEALFRRSTRVRQ 3033
VE TQ E + ++HDM D+ TP DD Q PT + P + RRSTR R
Sbjct: 733 VETPTQVEDETHDDQHDMGDVETPTQVEVDDDVHEQSPTA----EAPSDIPLRRSTRDRH 788
Query: 3034 PSTRYAPNEFVLLAGGGEPECYEDAIESEQK---CNAMDDEMKSLFENHIFDLVRV 3192
PSTRY+ +++VLL GEPE Y +A++ E K +AM DEM+SL ENH F+LV++
Sbjct: 789 PSTRYSVDDYVLLTDEGEPESYVEAMKDENKMKWVDAMRDEMESLHENHSFELVKL 844
Score = 44.7 bits (104), Expect(6) = 0.0
Identities = 24/68 (35%), Positives = 35/68 (51%)
Frame = +2
Query: 1280 RVTENRGRTKEKSQEGXXXXXXXXXXXYKDVE*HYCGKKGYIKRNCFKWKREKKNGSNSE 1459
R +NR R+K K+ + + +VE HYC KG+IK+ C + KR+ K G E
Sbjct: 187 RGPKNRDRSKSKTNK------------FANVECHYCHLKGHIKKYCRQLKRDMKQGKVKE 234
Query: 1460 TKKDGGSD 1483
K D G +
Sbjct: 235 KKNDNGGE 242
Score = 86.3 bits (212), Expect(2) = 1e-28
Identities = 41/73 (56%), Positives = 55/73 (75%)
Frame = +2
Query: 3875 SWDVVSWQSLLHGFVALSITKAEFIAATEACKELVWIRKPLKELRYSQGKYVLHCDSLSA 4054
S VSWQS L VALS T+AE+IAA EACKEL+W++ ++EL + Q +YV++CD+ SA
Sbjct: 1172 SGGAVSWQSRLQKCVALSTTEAEYIAAVEACKELLWMKCFMQELGFKQQRYVVYCDNQSA 1231
Query: 4055 IHLGKNPTFHFKS 4093
IHL KN T+H +S
Sbjct: 1232 IHLSKNSTYHARS 1244
Score = 70.9 bits (172), Expect(2) = 1e-28
Identities = 35/53 (66%), Positives = 38/53 (71%), Gaps = 1/53 (1%)
Frame = +1
Query: 4096 HIDVRYHWIHDVLN-KLADFEKFHTDNNGVDMLTKVLPRWKFEVCRSLA*MAS 4251
HIDVRYHW+ D LN L + EK HTDNNG DMLTK LPR K VC S+A M S
Sbjct: 1246 HIDVRYHWMRDALNDNLFEIEKIHTDNNGSDMLTKTLPREKLGVCCSIAGMIS 1298
>emb|CAN66323.1| hypothetical protein VITISV_007384 [Vitis vinifera]
Length = 1317
Score = 227 bits (579), Expect(7) = 0.0
Identities = 121/231 (52%), Positives = 154/231 (66%)
Frame = +3
Query: 3186 EGKTALKNR*VYRLKHEEHSSHPQYKYILVV*GFSQRRCVEFSKIFSPVEKMSSIRIVLV 3365
+GK LKNR VYR+K EEH+S P+YK LVV GF+Q++ ++F +IFSPV KMSSIR+VL
Sbjct: 817 KGKRXLKNRWVYRVKQEEHTSQPRYKARLVVKGFNQKKGIDFDEIFSPVVKMSSIRVVLG 876
Query: 3366 LAISPNIKIEQMDVKTTFFHGDLEEEIYTEQSEGFQVKGKEDYVCRLKKICYGLKQALR* 3545
LA S +++I+QMDVKT F HGDL++EIY EQ EGF +KGKEDYVC+LKK YGLKQA R
Sbjct: 877 LAASLDLEIQQMDVKTAFLHGDLDKEIYMEQPEGFVLKGKEDYVCKLKKSLYGLKQAPRQ 936
Query: 3546 WYKKFRSVMSKQGYRKTTSDHCVFVQKFSVDAFIILSLYVVDMLIVGKNIEMIDRLKQEL 3725
WYKKF SVM G+N+ ID LK++L
Sbjct: 937 WYKKFESVM-------------------------------------GENVSRIDNLKKQL 959
Query: 3726 NKSFVIKDLGPAK*IFGVKISRDRKAMKLWLSQENYIQKVLQRFRMDKSKV 3878
+KSF +KDLGP K I G++I RDR + KL + Q+ YI+KVL +F M K+KV
Sbjct: 960 SKSFAMKDLGPVKRILGIRIERDRASKKLCMLQKQYIEKVLAKFNMSKAKV 1010
Score = 214 bits (544), Expect(7) = 0.0
Identities = 115/282 (40%), Positives = 167/282 (59%)
Frame = +1
Query: 1495 TTLEDLLIVYDERVIHYTSHDTN*VADIGVALHATAKKEFFPSYTPSDYRILRMGNISMS 1674
TT D LIVYD V+++ +T+ V D G ++HAT +K+FF SYT D+ +RMGN +
Sbjct: 248 TTTSDFLIVYDSDVVNFACQETSWVIDSGASIHATPRKDFFTSYTSGDFGSVRMGNDGSA 307
Query: 1675 KVIGIDNIYLRISNNSQLLLPDVSHAPILVEFYFSWET***WLRNSFDGEIRKLSKGSFI 1854
K IG+ + L++ + ++V +GS +
Sbjct: 308 KAIGM--------GDESLMMKGSATPSVIVS--------------------GSSLRGSMV 339
Query: 1855 VARGKKYYNLYLMQASISSGSVHVMDCKYSTNL*HKRLNHISEKCLCYLIQIKVISLVST 2034
+A+G K +LYLMQA + S++ +D + L H RL H+SEK L L + ++S +
Sbjct: 340 IAKGNKSSSLYLMQARVIDSSINAVDDDSTFELWHNRLGHMSEKGLMILAKNNLLSGMKK 399
Query: 2035 TKLEQCAHCLAGKKTQVSFKTNPPSRKLKLLELIHSDVCDPFEVQSLGGVSYLVTFIDDH 2214
L++CAHCLAGK+T+V+FKT +RK + +L++SDVC P + ++LGG Y VTFIDDH
Sbjct: 400 GSLKRCAHCLAGKQTRVAFKTLRHTRKPGMFDLVYSDVCGPMKTKTLGGSLYFVTFIDDH 459
Query: 2215 SRKL*IYPLKTKDQALEKFKQFQASFEREIENKIKCIRVDNG 2340
SRK+ +Y LKTKDQ L+ FKQF A ER+ K+KCIR DNG
Sbjct: 460 SRKIWVYTLKTKDQVLDVFKQFHALVERQSGEKLKCIRTDNG 501
Score = 167 bits (424), Expect(7) = 0.0
Identities = 89/160 (55%), Positives = 112/160 (70%), Gaps = 6/160 (3%)
Frame = +3
Query: 2346 YCGPFD*YCKQQGIRHQKTP*----LNGLAERMNRTIVKRVQCLLLEAEFLSPFGVK-L* 2510
Y GPFD YC+Q IRHQKTP LNGLAERMNRT+V+RV+CLL +++ F + L
Sbjct: 504 YSGPFDEYCRQHDIRHQKTPPKTPQLNGLAERMNRTLVERVRCLLSQSQLPRSFWDEALN 563
Query: 2511 IQLFMSSIYLLLFLCMEILQRSFG*-EASYDYLRGFGCKVYIHVPKDEKSKLDSKTRQCV 2687
+ + ++ + L ++ R + E SYD+LR FGCK ++H+PKDE+SKLD KTR CV
Sbjct: 564 TVVHVLNLTPCVPLEFDVSDRIWSNNEISYDHLRVFGCKAFVHIPKDERSKLDVKTRPCV 623
Query: 2688 FLGYGQDEFRYRLYDPVVKKLVRSRDVIFFEDQIIDDFEK 2807
F+GYGQDE YR YDPV KKLVRSRDV+F ED I D EK
Sbjct: 624 FIGYGQDELGYRFYDPVQKKLVRSRDVVFMEDHTIQDIEK 663
Score = 144 bits (362), Expect(7) = 0.0
Identities = 65/146 (44%), Positives = 99/146 (67%), Gaps = 2/146 (1%)
Frame = +3
Query: 825 PEPKCDKEWEFEHKQVCAYIRSWVEENVRNHIANSTNAQVLWEKFENMYASKTGKNKLFC 1004
PE K D EW H+QVC YIR WV++NV NH++ +A+ LW K E +YA KTG NKL
Sbjct: 20 PENKXDAEWNLLHRQVCGYIRQWVDDNVLNHVSEEKHARSLWNKLEQLYARKTGNNKLLL 79
Query: 1005 L--IITLRYKEGTTVMDYVNKF*GFVDQLSNVGVVFEDEILGLWLLNTLSSSWETFPVSY 1178
+ +++L+Y++GT + D++N F G ++QL + + FE+E+ GLWLL TL + WETF S
Sbjct: 80 IKKMMSLKYQDGTPMTDHLNTFQGIINQLVGMNIKFEEEVQGLWLLGTLPNLWETFRTSL 139
Query: 1179 TNTAALVVMCLEYTKAGIPNEKVRIK 1256
+N+A +M ++ K+ + NE++R K
Sbjct: 140 SNSALDGIMNMDLVKSCVLNEEMRRK 165
Score = 84.0 bits (206), Expect(7) = 0.0
Identities = 48/117 (41%), Positives = 68/117 (58%), Gaps = 8/117 (6%)
Frame = +1
Query: 2866 VEGGTQTESDPQTNEHDMDDIGTP-----NDDVTDMQPPTTVDLPKEPDEALFRRSTRVR 3030
VE TQ E + ++HDM D+ P +DDV + P + P + RR TR R
Sbjct: 704 VETPTQVEDETHDDQHDMGDVEIPTQVEVDDDVHEQSPAA-----EAPSDIPLRRFTRDR 758
Query: 3031 QPSTRYAPNEFVLLAGGGEPECYEDAIESEQKCNAMD---DEMKSLFENHIFDLVRV 3192
PSTRY+ +++VLL G EPE Y +A++ E K +D DEM+SL ENH F+LV++
Sbjct: 759 HPSTRYSVDDYVLLTDGEEPESYVEAMKDENKMKWVDXMRDEMESLHENHSFELVKL 815
Score = 46.2 bits (108), Expect(7) = 0.0
Identities = 23/69 (33%), Positives = 36/69 (52%)
Frame = +2
Query: 1277 IRVTENRGRTKEKSQEGXXXXXXXXXXXYKDVE*HYCGKKGYIKRNCFKWKREKKNGSNS 1456
+ VTE +G++K + + + +VE HYC KG+IK+ C + KR+ K G
Sbjct: 175 VLVTEKKGKSKSRGPKNRDRSKSKTNK-FANVECHYCHLKGHIKKYCRQLKRDMKQGKVK 233
Query: 1457 ETKKDGGSD 1483
E K D G +
Sbjct: 234 EKKNDNGGE 242
Score = 23.1 bits (48), Expect(7) = 0.0
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +1
Query: 772 EYLLFVKSFHLPVFESD 822
E LL+VK ++ PVF S+
Sbjct: 2 EDLLYVKDYYXPVFASE 18
Score = 83.2 bits (204), Expect(2) = 1e-27
Identities = 39/73 (53%), Positives = 54/73 (73%)
Frame = +2
Query: 3875 SWDVVSWQSLLHGFVALSITKAEFIAATEACKELVWIRKPLKELRYSQGKYVLHCDSLSA 4054
S VSWQS L VALS T+AE+IAA EACKEL+W++ ++EL + Q +YV++CD+ +A
Sbjct: 1131 SGGAVSWQSRLQKCVALSTTEAEYIAAAEACKELLWMKCFMQELXFKQQRYVVYCDNQNA 1190
Query: 4055 IHLGKNPTFHFKS 4093
IHL KN +H +S
Sbjct: 1191 IHLSKNSXYHARS 1203
Score = 70.9 bits (172), Expect(2) = 1e-27
Identities = 35/53 (66%), Positives = 38/53 (71%), Gaps = 1/53 (1%)
Frame = +1
Query: 4096 HIDVRYHWIHDVLNK-LADFEKFHTDNNGVDMLTKVLPRWKFEVCRSLA*MAS 4251
HIDVRYHW+ D LN L + EK HTDNNG DMLTK LPR K VC S+A M S
Sbjct: 1205 HIDVRYHWMRDALNNNLFEIEKIHTDNNGSDMLTKTLPREKLGVCCSIAGMIS 1257
>gb|AER13172.1| putative gag/pol polyprotein [Phaseolus vulgaris]
Length = 1556
Score = 300 bits (769), Expect(6) = 0.0
Identities = 148/229 (64%), Positives = 191/229 (83%)
Frame = +3
Query: 3192 KTALKNR*VYRLKHEEHSSHPQYKYILVV*GFSQRRCVEFSKIFSPVEKMSSIRIVLVLA 3371
K AL+NR +YR+K E +S+ P+YK LVV GF QR+ ++F++IFSPV KMSSIRIVL LA
Sbjct: 796 KKALENRWIYRVKQESNSTSPRYKARLVVKGFRQRKGIDFNEIFSPVVKMSSIRIVLSLA 855
Query: 3372 ISPNIKIEQMDVKTTFFHGDLEEEIYTEQSEGFQVKGKEDYVCRLKKICYGLKQALR*WY 3551
+ ++++EQMDVKT F HGDLEEEIY +Q +GF V+GKED+VCRL+K YGLKQA R WY
Sbjct: 856 ATLDLEVEQMDVKTAFLHGDLEEEIYMKQPDGFLVEGKEDHVCRLRKSLYGLKQAPRQWY 915
Query: 3552 KKFRSVMSKQGYRKTTSDHCVFVQKFSVDAFIILSLYVVDMLIVGKNIEMIDRLKQELNK 3731
KKF SVM +QGY+KTTSDHCVFV+KF+ D FIIL LYV D+LIVGK+I MI+RLK++L++
Sbjct: 916 KKFESVMCEQGYKKTTSDHCVFVKKFANDDFIILLLYVDDILIVGKDISMINRLKKQLSE 975
Query: 3732 SFVIKDLGPAK*IFGVKISRDRKAMKLWLSQENYIQKVLQRFRMDKSKV 3878
SF +KD+G AK I G++I RDR+ KLWLSQENY+++VLQRF+M+ +KV
Sbjct: 976 SFAMKDMGAAKQILGIRIMRDRQEKKLWLSQENYVKRVLQRFQMENAKV 1024
Score = 191 bits (485), Expect(6) = 0.0
Identities = 119/288 (41%), Positives = 163/288 (56%), Gaps = 4/288 (1%)
Frame = +1
Query: 1504 EDLLIVYDERVIHYTSHDTN*VADIGVALHATAKKEFFPSYTPSDYRILRMGNISMSKVI 1683
+DL+I+ D ++ S ++ + D GV LH VI
Sbjct: 296 DDLIILRDHDSVNLVSDESMWIIDSGVTLH----------------------------VI 327
Query: 1684 GIDNIYLRISNNSQLLLPDVSHAPI----LVEFYFSWET***WLRNSFDGEIRKLSKGSF 1851
GI ++ L+ + QLLL V HAP L+ ++ N F KLS+G+
Sbjct: 328 GIADVCLQTNMGMQLLLRGVKHAPDVRFNLLSVQMLDDS---GFENHFGLGKWKLSRGNL 384
Query: 1852 IVARGKKYYNLYLMQASISSGSVHVMDCKYSTNL*HKRLNHISEKCLCYLIQIKVISLVS 2031
IVA+G + LY +A ++ SV+ MD S L H+RL+HISEK L L + V+S +
Sbjct: 385 IVAKGDRISKLYWTKALVAKDSVNAMDMDAS--LWHRRLSHISEKGLNCLAKKDVLSGLK 442
Query: 2032 TTKLEQCAHCLAGKKTQVSFKTNPPSRKLKLLELIHSDVCDPFEVQSLGGVSYLVTFIDD 2211
+LE+C+HC+AGK+T+VSFK +PPS+K +LLEL+HSDVC P +V+S G Y VTFIDD
Sbjct: 443 NAELEKCSHCMAGKQTRVSFKKHPPSKKSELLELVHSDVCGPLKVKSFTGTIYFVTFIDD 502
Query: 2212 HSRKL*IYPLKTKDQALEKFKQFQASFEREIENKIKCIRVDNGCSIVG 2355
SRKL +Y LKTKDQ L KFK+F ER+ K+KCIR DNG G
Sbjct: 503 CSRKLWVYALKTKDQVLAKFKEFHVLVERQSGKKLKCIRTDNGGEYCG 550
Score = 106 bits (264), Expect(6) = 0.0
Identities = 68/168 (40%), Positives = 88/168 (52%), Gaps = 6/168 (3%)
Frame = +3
Query: 2346 YCGPFD*YCKQQGIRHQ----KTP*LNGLAERMNRTIVKRVQCLLLEAEFLSPF-GVKL* 2510
YCGPFD YCKQ GIRH+ KTP LNGLAERMNRT+++RV+C+L +A+ F G L
Sbjct: 548 YCGPFDAYCKQHGIRHEKTPPKTPQLNGLAERMNRTLIERVRCMLSKAKLPKHFWGEALY 607
Query: 2511 IQLFMSSIYLLLFLCMEILQRS-FG*EASYDYLRGFGCKVYIHVPKDEKSKLDSKTRQCV 2687
+ + ++ + L E+ + FG YD+LR FGCK Y+H
Sbjct: 608 TAVHVINLSPAIALNAEVPDKVWFGKNVKYDHLRVFGCKAYVH----------------- 650
Query: 2688 FLGYGQDEFRYRLYDPVVKKLVRSRDVIFFEDQIIDDFEKV*KAGSES 2831
KK VRSRDV F EDQ I+D +K K SE+
Sbjct: 651 ------------------KKAVRSRDVKFMEDQTIEDIDKTEKITSET 680
Score = 75.1 bits (183), Expect(6) = 0.0
Identities = 36/63 (57%), Positives = 47/63 (74%)
Frame = +3
Query: 1068 GFVDQLSNVGVVFEDEILGLWLLNTLSSSWETFPVSYTNTAALVVMCLEYTKAGIPNEKV 1247
GF DQLS +G+ F+DE+LGLWLLNTL SWETF VS TN++ V+ LE K+ + NE++
Sbjct: 145 GFRDQLSQMGIKFDDEVLGLWLLNTLPDSWETFRVSITNSSPDGVVSLENVKSSVLNEEM 204
Query: 1248 RIK 1256
R K
Sbjct: 205 RRK 207
Score = 63.9 bits (154), Expect(6) = 0.0
Identities = 42/115 (36%), Positives = 60/115 (52%), Gaps = 12/115 (10%)
Frame = +1
Query: 2884 TESDPQTNEHDMDDIGTPNDDVTDMQPPTTVDLPKEP---------DEALFRRSTRVRQP 3036
+E+D + + D +DDV D Q D+P + DE L +
Sbjct: 678 SETDNRLSNVDPVLSDEQHDDVDDQQLGDAFDVPIDDSEEEHGMSQDEDLGDAPEPPQVQ 737
Query: 3037 STRYAPNEFVLLAGGGEPECYEDAIESEQK---CNAMDDEMKSLFENHIFDLVRV 3192
RY +++V L GEPECY +A+ESE+K +AM DEMKSL +NH FDLV++
Sbjct: 738 IRRYPSDDYVTLTDEGEPECYLEAMESEEKKKWLDAMQDEMKSLHDNHTFDLVKL 792
Score = 58.5 bits (140), Expect(6) = 0.0
Identities = 28/67 (41%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Frame = +2
Query: 1286 TENRGRTKEKSQEGXXXXXXXXXXX-YKDVE*HYCGKKGYIKRNCFKWKREKKNGSNSET 1462
TENRGR+++K +G YK+VE HYC K G+I+RNCF WK+E K+ +
Sbjct: 220 TENRGRSQKKELKGSKQNSRSKSKSRYKNVECHYCHKTGHIQRNCFLWKKENKDKKGKQK 279
Query: 1463 KKDGGSD 1483
+K +D
Sbjct: 280 EKHHDND 286
Score = 93.2 bits (230), Expect(2) = 3e-27
Identities = 45/69 (65%), Positives = 55/69 (79%)
Frame = +2
Query: 3887 VSWQSLLHGFVALSITKAEFIAATEACKELVWIRKPLKELRYSQGKYVLHCDSLSAIHLG 4066
V+WQS L VALS T+AEFIA TEACKEL+W++K L+EL + Q KY+L CDS SAI+LG
Sbjct: 1149 VAWQSRLQKCVALSTTEAEFIAITEACKELLWVKKLLQELSFVQDKYLLFCDSQSAIYLG 1208
Query: 4067 KNPTFHFKS 4093
KN TFH +S
Sbjct: 1209 KNSTFHSRS 1217
Score = 59.3 bits (142), Expect(2) = 3e-27
Identities = 28/49 (57%), Positives = 33/49 (67%), Gaps = 1/49 (2%)
Frame = +1
Query: 4096 HIDVRYHWIHDVLN-KLADFEKFHTDNNGVDMLTKVLPRWKFEVCRSLA 4239
HIDVRYHWI D L +L + K HTD+N DM+TK LPR K E C +A
Sbjct: 1219 HIDVRYHWIRDALEARLLELAKVHTDDNCADMMTKSLPRSKSETCCKIA 1267
>emb|CAN77602.1| hypothetical protein VITISV_024474 [Vitis vinifera]
Length = 1207
Score = 207 bits (526), Expect(6) = 0.0
Identities = 118/283 (41%), Positives = 163/283 (57%), Gaps = 1/283 (0%)
Frame = +1
Query: 1495 TTLEDLLIVYDERVIHYTSHDTN*VADIGVALHATAKKEFFPSYTPSDYRILRMGNISMS 1674
TT D IVYD V +FF SYT D+ +RMGN +
Sbjct: 175 TTTSDFFIVYDSDV------------------------DFFTSYTSGDFGSVRMGNDDSA 210
Query: 1675 KVIGIDNIYLRISNNSQLLLPDVSHAP-ILVEFYFSWET***WLRNSFDGEIRKLSKGSF 1851
K IG+ N+ L SN + L L +V H P I + + + N F KL++GS
Sbjct: 211 KAIGMRNVRLETSNGTMLTLKNVKHIPDIRMNLISTGKLDDEGFYNIFRDSQWKLTRGSM 270
Query: 1852 IVARGKKYYNLYLMQASISSGSVHVMDCKYSTNL*HKRLNHISEKCLCYLIQIKVISLVS 2031
++A+G K +LYLMQ + S++ +D + L H RL H+SEK L L + ++S +
Sbjct: 271 VIAKGNKSSSLYLMQTRVIDSSINAVDDDSTFELWHNRLGHMSEKGLMILAKKNLLSGMK 330
Query: 2032 TTKLEQCAHCLAGKKTQVSFKTNPPSRKLKLLELIHSDVCDPFEVQSLGGVSYLVTFIDD 2211
L++CAHCLAGK+T+V+FKT +RK +L+L++SDVC P + ++LGG Y VTFIDD
Sbjct: 331 KGSLKRCAHCLAGKQTRVAFKTLRYTRKPGMLDLVYSDVCGPMKTKTLGGSLYFVTFIDD 390
Query: 2212 HSRKL*IYPLKTKDQALEKFKQFQASFEREIENKIKCIRVDNG 2340
HSRK+ +Y LKTKDQ L+ FKQF A ER+ K+KCIR DNG
Sbjct: 391 HSRKIWVYTLKTKDQVLDVFKQFHALVERQSGEKLKCIRTDNG 433
Score = 205 bits (522), Expect(6) = 0.0
Identities = 113/231 (48%), Positives = 144/231 (62%)
Frame = +3
Query: 3186 EGKTALKNR*VYRLKHEEHSSHPQYKYILVV*GFSQRRCVEFSKIFSPVEKMSSIRIVLV 3365
+GK ALKNR VYR+K EEH+S P+YK LVV GF+Q++ ++F +IF PV KMSSIR+VL
Sbjct: 749 KGKRALKNRWVYRVKQEEHTSQPRYKARLVVKGFNQKKGIDFDEIFFPVVKMSSIRVVLG 808
Query: 3366 LAISPNIKIEQMDVKTTFFHGDLEEEIYTEQSEGFQVKGKEDYVCRLKKICYGLKQALR* 3545
LA S +++I+QMDVKT F HG+L++EIY EQ EGF +KGKEDYVC+LKK YGLKQA R
Sbjct: 809 LAASLDLEIQQMDVKTAFLHGNLDKEIYMEQPEGFVLKGKEDYVCKLKKSLYGLKQAPRQ 868
Query: 3546 WYKKFRSVMSKQGYRKTTSDHCVFVQKFSVDAFIILSLYVVDMLIVGKNIEMIDRLKQEL 3725
W N+ ID LK++L
Sbjct: 869 W-----------------------------------------------NVSRIDNLKKQL 881
Query: 3726 NKSFVIKDLGPAK*IFGVKISRDRKAMKLWLSQENYIQKVLQRFRMDKSKV 3878
+KSF +KDLGP K I G++I RDR + KL + QE YI+ VL RF M K+KV
Sbjct: 882 SKSFAMKDLGPVKRILGIRIERDRASKKLCMLQEQYIENVLARFNMSKAKV 932
Score = 171 bits (434), Expect(6) = 0.0
Identities = 90/160 (56%), Positives = 113/160 (70%), Gaps = 6/160 (3%)
Frame = +3
Query: 2346 YCGPFD*YCKQQGIRHQKT----P*LNGLAERMNRTIVKRVQCLLLEAEFLSPF-GVKL* 2510
Y PFD YC+Q GIRHQKT P LNGLAERMNRT+V+RV+CLL +++ F G L
Sbjct: 436 YSSPFDEYCRQHGIRHQKTSPKTPQLNGLAERMNRTLVERVRCLLSQSQLPRSFWGEALN 495
Query: 2511 IQLFMSSIYLLLFLCMEILQRSFG*-EASYDYLRGFGCKVYIHVPKDEKSKLDSKTRQCV 2687
+ + ++ + L ++ R + E SYD+LR FGCK ++H+PKDE+SKLD+KTR CV
Sbjct: 496 TVVHVLNLTPCVPLEFDVPDRIWSKNEISYDHLRVFGCKAFVHIPKDERSKLDAKTRPCV 555
Query: 2688 FLGYGQDEFRYRLYDPVVKKLVRSRDVIFFEDQIIDDFEK 2807
F+GYGQDE YR YDPV KKLVRSRDV+F ED I D EK
Sbjct: 556 FIGYGQDELGYRFYDPVQKKLVRSRDVVFMEDHTIQDIEK 595
Score = 95.1 bits (235), Expect(6) = 0.0
Identities = 53/117 (45%), Positives = 72/117 (61%), Gaps = 8/117 (6%)
Frame = +1
Query: 2866 VEGGTQTESDPQTNEHDMDDIGTP-----NDDVTDMQPPTTVDLPKEPDEALFRRSTRVR 3030
VE TQ E + ++HDM D+ TP +DDV + P + P + RRSTR R
Sbjct: 636 VETPTQVEDEAHDDQHDMGDVETPTQVEVDDDVHEQSPAA-----EAPSDIPLRRSTRDR 690
Query: 3031 QPSTRYAPNEFVLLAGGGEPECYEDAIESEQK---CNAMDDEMKSLFENHIFDLVRV 3192
PSTRY+ +++VLL GGEPE Y +A+E E K +AM DEM+SL ENH F+LV++
Sbjct: 691 HPSTRYSVDDYVLLIDGGEPESYVEAMEDENKMKWVDAMQDEMESLHENHSFELVKL 747
Score = 53.9 bits (128), Expect(6) = 0.0
Identities = 25/59 (42%), Positives = 38/59 (64%)
Frame = +3
Query: 1080 QLSNVGVVFEDEILGLWLLNTLSSSWETFPVSYTNTAALVVMCLEYTKAGIPNEKVRIK 1256
QL+ + + FE+E+ GLWLL TL SWETF S N+ +M ++ K+ + NE++R K
Sbjct: 34 QLAGMNIKFEEEVQGLWLLGTLPDSWETFRTSLFNSTPDGIMNMDLVKSCVLNEEMRRK 92
Score = 46.2 bits (108), Expect(6) = 0.0
Identities = 24/69 (34%), Positives = 35/69 (50%)
Frame = +2
Query: 1277 IRVTENRGRTKEKSQEGXXXXXXXXXXXYKDVE*HYCGKKGYIKRNCFKWKREKKNGSNS 1456
+ V E RGR+K + + + +VE HYC KG+IK+ C + KR+ K G
Sbjct: 102 VLVIEKRGRSKSRGPKNRDRSKNKTNK-FANVECHYCHLKGHIKKYCRQLKRDMKQGKVK 160
Query: 1457 ETKKDGGSD 1483
E K D G +
Sbjct: 161 EKKNDNGGE 169
Score = 71.2 bits (173), Expect(2) = 9e-15
Identities = 34/66 (51%), Positives = 46/66 (69%)
Frame = +2
Query: 3875 SWDVVSWQSLLHGFVALSITKAEFIAATEACKELVWIRKPLKELRYSQGKYVLHCDSLSA 4054
S VSWQS L VALS T+A++IA EACKEL+W + ++EL + Q +Y ++CD+ SA
Sbjct: 1053 SGGAVSWQSRLQKCVALSTTEAKYIATAEACKELLWXKCFMQELGFKQQRYXVYCDNQSA 1112
Query: 4055 IHLGKN 4072
IHL N
Sbjct: 1113 IHLNNN 1118
Score = 39.3 bits (90), Expect(2) = 9e-15
Identities = 19/30 (63%), Positives = 21/30 (70%)
Frame = +1
Query: 4162 HTDNNGVDMLTKVLPRWKFEVCRSLA*MAS 4251
H +NNG DMLTK LPR K VC S+A M S
Sbjct: 1114 HLNNNGXDMLTKTLPREKLGVCCSIAGMIS 1143
>emb|CAN61554.1| hypothetical protein VITISV_028479 [Vitis vinifera]
Length = 1144
Score = 181 bits (460), Expect(8) = e-166
Identities = 99/197 (50%), Positives = 127/197 (64%)
Frame = +3
Query: 3288 SQRRCVEFSKIFSPVEKMSSIRIVLVLAISPNIKIEQMDVKTTFFHGDLEEEIYTEQSEG 3467
SQ++ ++F +IFSPV KMS IR+VL LA S +++I+
Sbjct: 750 SQKKGIDFDEIFSPVVKMSYIRVVLGLAASLDLEID------------------------ 785
Query: 3468 FQVKGKEDYVCRLKKICYGLKQALR*WYKKFRSVMSKQGYRKTTSDHCVFVQKFSVDAFI 3647
YGLKQA R WYKKF SVM +QGYRKTTSDHCVFVQKFS + F+
Sbjct: 786 ----------------LYGLKQAPRQWYKKFESVMGEQGYRKTTSDHCVFVQKFSDNDFV 829
Query: 3648 ILSLYVVDMLIVGKNIEMIDRLKQELNKSFVIKDLGPAK*IFGVKISRDRKAMKLWLSQE 3827
I LYV D+LIVG+N+ ID+LK++L KSF +KDLGPAK I G++I RDR + KL++SQE
Sbjct: 830 IFLLYVDDILIVGRNVSRIDKLKKQLRKSFSMKDLGPAKKILGIRIERDRASKKLYMSQE 889
Query: 3828 NYIQKVLQRFRMDKSKV 3878
YI+KVL+RF M +KV
Sbjct: 890 QYIEKVLERFNMSNAKV 906
Score = 138 bits (347), Expect(8) = e-166
Identities = 91/264 (34%), Positives = 134/264 (50%), Gaps = 1/264 (0%)
Frame = +1
Query: 1567 VADIGVALHATAKKEFFPSYTPSDYRILRMGNISMSKVIGIDNIYLRISNNSQLLLPDVS 1746
V D G ++H T +K+FF SYT D+ +RMGN +K IG+ N+ L SN L+L +V
Sbjct: 271 VIDSGASIHVTPRKDFFTSYTSGDFGSVRMGNDGSAKAIGMGNVRLETSNGIVLILKNVK 330
Query: 1747 HAP-ILVEFYFSWET***WLRNSFDGEIRKLSKGSFIVARGKKYYNLYLMQASISSGSVH 1923
H P I + + N+F KL++ S + A + + S+
Sbjct: 331 HIPDIHMNLISIGKLDDEXFCNTFRDXKXKLTRRSMV--------------ARVINFSII 376
Query: 1924 VMDCKYSTNL*HKRLNHISEKCLCYLIQIKVISLVSTTKLEQCAHCLAGKKTQVSFKTNP 2103
+ + L H RL H+SEK L L + ++S GK+T+V+FKT+
Sbjct: 377 AVGDDSTVELCHNRLRHMSEKGLMILAKNNLLS---------------GKQTRVAFKTHY 421
Query: 2104 PSRKLKLLELIHSDVCDPFEVQSLGGVSYLVTFIDDHSRKL*IYPLKTKDQALEKFKQFQ 2283
+RK +L+L++ DVC P + ++ GG Y VTFIDDHSRK+ +Y LKTKDQ
Sbjct: 422 HTRKPSMLDLVYFDVCGPMKTKTPGGSLYFVTFIDDHSRKILVYTLKTKDQ--------- 472
Query: 2284 ASFEREIENKIKCIRVDNGCSIVG 2355
R+ K+KCI+ DNG G
Sbjct: 473 ----RQSSEKLKCIQTDNGGEYFG 492
Score = 132 bits (331), Expect(8) = e-166
Identities = 59/136 (43%), Positives = 89/136 (65%), Gaps = 2/136 (1%)
Frame = +3
Query: 825 PEPKCDKEWEFEHKQVCAYIRSWVEENVRNHIANSTNAQVLWEKFENMYASKTGKNKLFC 1004
PE K D EW H+QVC YI+ WV++NV NH++ + LW K + +YA K G NKLF
Sbjct: 42 PENKTDAEWNLLHRQVCGYIKQWVDDNVLNHVSEEKHTWSLWNKLKQLYARKIGNNKLFF 101
Query: 1005 L--IITLRYKEGTTVMDYVNKF*GFVDQLSNVGVVFEDEILGLWLLNTLSSSWETFPVSY 1178
+ +I+L+Y++GT ++D++N F G ++QL + + FE+E+ GLWLL TL SWE F S
Sbjct: 102 IKKMISLKYQDGTPMIDHLNTFQGIINQLVGMNIKFEEEVQGLWLLGTLPDSWERFRTSL 161
Query: 1179 TNTAALVVMCLEYTKA 1226
+N+A M ++ K+
Sbjct: 162 SNSALGGTMNMDLVKS 177
Score = 131 bits (329), Expect(8) = e-166
Identities = 78/158 (49%), Positives = 99/158 (62%), Gaps = 8/158 (5%)
Frame = +3
Query: 2346 YCGPFD*YCKQQGIRHQKTP*----LNGLAERMNRTIVKRVQCLLLEAEFLSPFGVKL*I 2513
Y G FD YC+Q GIRHQKTP LNGLAERMNRT+V+RV+C L I
Sbjct: 490 YFGSFDEYCRQYGIRHQKTPPKTPQLNGLAERMNRTLVERVRCEALN------------I 537
Query: 2514 QLFMSSIYLLLFLCMEILQRSF-G*EASYDYLRGFGCKVYIHVPKDEKSKLDSKTRQCVF 2690
+ + ++ + L + R G E SYD+L FGCK ++H+ KDE+SKL++KTR CVF
Sbjct: 538 VVHVLNLTPCVPLEFDDPDRILSGNEISYDHLYVFGCKAFVHILKDERSKLNAKTRPCVF 597
Query: 2691 LGYGQDEFRYRLYDPVVKKL-VRSRDVIFFE--DQIID 2795
+GYGQDE YR YDPV KKL + D I F+ D +ID
Sbjct: 598 IGYGQDELGYRFYDPVQKKLDIEKTDAIEFQYSDNLID 635
Score = 59.3 bits (142), Expect(8) = e-166
Identities = 39/113 (34%), Positives = 58/113 (51%), Gaps = 8/113 (7%)
Frame = +1
Query: 2878 TQTESDPQTNEHDMDDIGTP-----NDDVTDMQPPTTVDLPKEPDEALFRRSTRVRQPST 3042
TQ E + ++HD+ D+ TP +DDV + P + K P + RRSTR + ST
Sbjct: 646 TQVEDEAHDDQHDIGDVETPTQVEMDDDVHEQSP-----VSKAPPDIPLRRSTRDQHHST 700
Query: 3043 RYAPNEFVLLAGGGEPECYEDAIESEQK---CNAMDDEMKSLFENHIFDLVRV 3192
RY +++ +A+ E K +AM DEMKSL ENH F+L ++
Sbjct: 701 RYFVDDY-------------EAMRDENKMKWVDAMQDEMKSLHENHSFELAKL 740
Score = 45.4 bits (106), Expect(8) = e-166
Identities = 24/69 (34%), Positives = 35/69 (50%)
Frame = +2
Query: 1277 IRVTENRGRTKEKSQEGXXXXXXXXXXXYKDVE*HYCGKKGYIKRNCFKWKREKKNGSNS 1456
+ VTE RGR+K +S + + +VE HYC KG I++ C + KR K G
Sbjct: 186 VLVTEKRGRSKSRSPKNRDRSKSMTNK-FSNVECHYCHLKGLIRKYCRQLKRYMKQGKVK 244
Query: 1457 ETKKDGGSD 1483
+ K D G +
Sbjct: 245 DKKNDNGGE 253
Score = 30.4 bits (67), Expect(8) = e-166
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = +2
Query: 707 EWNNGRMIYLNGSNYYNRKGRM 772
E N RMI LNGSNY+ KG+M
Sbjct: 2 ESNTSRMITLNGSNYHVWKGKM 23
Score = 27.3 bits (59), Expect(8) = e-166
Identities = 11/21 (52%), Positives = 17/21 (80%)
Frame = +1
Query: 760 EGKNEYLLFVKSFHLPVFESD 822
+GK E LL+V+ ++LPVF S+
Sbjct: 20 KGKMEDLLYVQDYYLPVFASE 40
Score = 65.1 bits (157), Expect(2) = 1e-14
Identities = 32/53 (60%), Positives = 37/53 (69%), Gaps = 1/53 (1%)
Frame = +1
Query: 4096 HIDVRYHWIHDVLNK-LADFEKFHTDNNGVDMLTKVLPRWKFEVCRSLA*MAS 4251
HIDVRYHW+ D LN L + EK HTD N +DML K LPR K EVC S+ MA+
Sbjct: 1072 HIDVRYHWMRDALNNNLFELEKMHTDYNDLDMLMKSLPREKLEVCCSIVEMAT 1124
Score = 44.7 bits (104), Expect(2) = 1e-14
Identities = 22/31 (70%), Positives = 25/31 (80%)
Frame = +2
Query: 3884 VVSWQSLLHGFVALSITKAEFIAATEACKEL 3976
VVSWQS L VALS T+AE+IA T+ACKEL
Sbjct: 1030 VVSWQSRLQKCVALSTTEAEYIATTKACKEL 1060
>sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol polyprotein from transposon TNT
1-94; Includes: RecName: Full=Protease; Includes:
RecName: Full=Reverse transcriptase; Includes: RecName:
Full=Endonuclease gi|20045|emb|CAA32025.1| unnamed
protein product [Nicotiana tabacum]
Length = 1328
Score = 247 bits (630), Expect(4) = e-151
Identities = 129/230 (56%), Positives = 168/230 (73%)
Frame = +3
Query: 3186 EGKTALKNR*VYRLKHEEHSSHPQYKYILVV*GFSQRRCVEFSKIFSPVEKMSSIRIVLV 3365
+GK LK + V++LK + +YK LVV GF Q++ ++F +IFSPV KM+SIR +L
Sbjct: 850 KGKRPLKCKWVFKLKKDGDCKLVRYKARLVVKGFEQKKGIDFDEIFSPVVKMTSIRTILS 909
Query: 3366 LAISPNIKIEQMDVKTTFFHGDLEEEIYTEQSEGFQVKGKEDYVCRLKKICYGLKQALR* 3545
LA S ++++EQ+DVKT F HGDLEEEIY EQ EGF+V GK+ VC+L K YGLKQA R
Sbjct: 910 LAASLDLEVEQLDVKTAFLHGDLEEEIYMEQPEGFEVAGKKHMVCKLNKSLYGLKQAPRQ 969
Query: 3546 WYKKFRSVMSKQGYRKTTSDHCVFVQKFSVDAFIILSLYVVDMLIVGKNIEMIDRLKQEL 3725
WY KF S M Q Y KT SD CV+ ++FS + FIIL LYV DMLIVGK+ +I +LK +L
Sbjct: 970 WYMKFDSFMKSQTYLKTYSDPCVYFKRFSENNFIILLLYVDDMLIVGKDKGLIAKLKGDL 1029
Query: 3726 NKSFVIKDLGPAK*IFGVKISRDRKAMKLWLSQENYIQKVLQRFRMDKSK 3875
+KSF +KDLGPA+ I G+KI R+R + KLWLSQE YI++VL+RF M +K
Sbjct: 1030 SKSFDMKDLGPAQQILGMKIVRERTSRKLWLSQEKYIERVLERFNMKNAK 1079
Score = 187 bits (474), Expect(4) = e-151
Identities = 107/278 (38%), Positives = 160/278 (57%), Gaps = 1/278 (0%)
Frame = +1
Query: 1510 LLIVYDERVIHYTSHDTN*VADIGVALHATAKKEFFPSYTPSDYRILRMGNISMSKVIGI 1689
L I +E +H + ++ V D + HAT ++ F Y D+ ++MGN S SK+ GI
Sbjct: 276 LFINEEEECMHLSGPESEWVVDTAASHHATPVRDLFCRYVAGDFGTVKMGNTSYSKIAGI 335
Query: 1690 DNIYLRISNNSQLLLPDVSHAPIL-VEFYFSWET***WLRNSFDGEIRKLSKGSFIVARG 1866
+I ++ + L+L DV H P L + + F + +L+KGS ++A+G
Sbjct: 336 GDICIKTNVGCTLVLKDVRHVPDLRMNLISGIALDRDGYESYFANQKWRLTKGSLVIAKG 395
Query: 1867 KKYYNLYLMQASISSGSVHVMDCKYSTNL*HKRLNHISEKCLCYLIQIKVISLVSTTKLE 2046
LY A I G ++ + S +L HKR+ H+SEK L L + +IS T ++
Sbjct: 396 VARGTLYRTNAEICQGELNAAQDEISVDLWHKRMGHMSEKGLQILAKKSLISYAKGTTVK 455
Query: 2047 QCAHCLAGKKTQVSFKTNPPSRKLKLLELIHSDVCDPFEVQSLGGVSYLVTFIDDHSRKL 2226
C +CL GK+ +VSF+T+ RKL +L+L++SDVC P E++S+GG Y VTFIDD SRKL
Sbjct: 456 PCDYCLFGKQHRVSFQTSS-ERKLNILDLVYSDVCGPMEIESMGGNKYFVTFIDDASRKL 514
Query: 2227 *IYPLKTKDQALEKFKQFQASFEREIENKIKCIRVDNG 2340
+Y LKTKDQ + F++F A ERE K+K +R DNG
Sbjct: 515 WVYILKTKDQVFQVFQKFHALVERETGRKLKRLRSDNG 552
Score = 127 bits (319), Expect(4) = e-151
Identities = 67/150 (44%), Positives = 100/150 (66%), Gaps = 6/150 (4%)
Frame = +3
Query: 2358 FD*YCKQQGIRHQKT----P*LNGLAERMNRTIVKRVQCLLLEAEFLSPF-GVKL*IQLF 2522
F+ YC GIRH+KT P NG+AERMNRTIV++V+ +L A+ F G + +
Sbjct: 560 FEEYCSSHGIRHEKTVPGTPQHNGVAERMNRTIVEKVRSMLRMAKLPKSFWGEAVQTACY 619
Query: 2523 MSSIYLLLFLCMEILQRSF-G*EASYDYLRGFGCKVYIHVPKDEKSKLDSKTRQCVFLGY 2699
+ + + L EI +R + E SY +L+ FGC+ + HVPK++++KLD K+ C+F+GY
Sbjct: 620 LINRSPSVPLAFEIPERVWTNKEVSYSHLKVFGCRAFAHVPKEQRTKLDDKSIPCIFIGY 679
Query: 2700 GQDEFRYRLYDPVVKKLVRSRDVIFFEDQI 2789
G +EF YRL+DPV KK++RSRDV+F E ++
Sbjct: 680 GDEEFGYRLWDPVKKKVIRSRDVVFRESEV 709
Score = 49.7 bits (117), Expect(4) = e-151
Identities = 37/125 (29%), Positives = 61/125 (48%), Gaps = 4/125 (3%)
Frame = +1
Query: 2830 VSMIPTHRVPNTVEGGTQTESDPQTNEHDMDDIGTPNDD-VTDMQPPTTVDLPKEPDEAL 3006
V++ T P + E T S+ ++ + G D+ V +++ PT + +P
Sbjct: 728 VTIPSTSNNPTSAESTTDEVSEQGEQPGEVIEQGEQLDEGVEEVEHPTQGEEQHQP---- 783
Query: 3007 FRRSTRVRQPSTRYAPNEFVLLAGGGEPECYEDAI---ESEQKCNAMDDEMKSLFENHIF 3177
RRS R R S RY E+VL++ EPE ++ + E Q AM +EM+SL +N +
Sbjct: 784 LRRSERPRVESRRYPSTEYVLISDDREPESLKEVLSHPEKNQLMKAMQEEMESLQKNGTY 843
Query: 3178 DLVRV 3192
LV +
Sbjct: 844 KLVEL 848
Score = 76.6 bits (187), Expect(2) = 5e-21
Identities = 37/73 (50%), Positives = 52/73 (71%)
Frame = +2
Query: 3875 SWDVVSWQSLLHGFVALSITKAEFIAATEACKELVWIRKPLKELRYSQGKYVLHCDSLSA 4054
S +SWQS L VALS T+AE+IAATE KE++W+++ L+EL Q +YV++CDS SA
Sbjct: 1201 SGGAISWQSKLQKCVALSTTEAEYIAATETGKEMIWLKRFLQELGLHQKEYVVYCDSQSA 1260
Query: 4055 IHLGKNPTFHFKS 4093
I L KN +H ++
Sbjct: 1261 IDLSKNSMYHART 1273
Score = 55.1 bits (131), Expect(2) = 5e-21
Identities = 27/54 (50%), Positives = 37/54 (68%), Gaps = 1/54 (1%)
Frame = +1
Query: 4096 HIDVRYHWIHDVLN-KLADFEKFHTDNNGVDMLTKVLPRWKFEVCRSLA*MASD 4254
HIDVRYHWI ++++ + K T+ N DMLTKV+PR KFE+C+ L M S+
Sbjct: 1275 HIDVRYHWIREMVDDESLKVLKISTNENPADMLTKVVPRNKFELCKELVGMHSN 1328
Score = 75.1 bits (183), Expect = 3e-10
Identities = 44/146 (30%), Positives = 80/146 (54%), Gaps = 2/146 (1%)
Frame = +3
Query: 825 PEPKCDKEWEFEHKQVCAYIRSWVEENVRNHIANSTNAQVLWEKFENMYASKTGKNKLFC 1004
P+ ++W ++ + IR + ++V N+I + A+ +W + E++Y SKT NKL+
Sbjct: 44 PDTMKAEDWADLDERAASAIRLHLSDDVVNNIIDEDTARGIWTRLESLYMSKTLTNKLYL 103
Query: 1005 L--IITLRYKEGTTVMDYVNKF*GFVDQLSNVGVVFEDEILGLWLLNTLSSSWETFPVSY 1178
+ L EGT + ++N F G + QL+N+GV E+E + LLN+L SS++ +
Sbjct: 104 KKQLYALHMSEGTNFLSHLNVFNGLITQLANLGVKIEEEDKAILLLNSLPSSYDNLATTI 163
Query: 1179 TNTAALVVMCLEYTKAGIPNEKVRIK 1256
+ + + + T A + NEK+R K
Sbjct: 164 LHGKTTIEL-KDVTSALLLNEKMRKK 188
>emb|CAN65406.1| hypothetical protein VITISV_030853 [Vitis vinifera]
Length = 1017
Score = 236 bits (602), Expect(4) = e-151
Identities = 123/283 (43%), Positives = 183/283 (64%), Gaps = 1/283 (0%)
Frame = +1
Query: 1495 TTLEDLLIVYDERVIHYTSHDTN*VADIGVALHATAKKEFFPSYTPSDYRILRMGNISMS 1674
TT D LIVYD V+++ +T+ V D G ++HAT +K+FF SYT SD+ +RMGN ++
Sbjct: 22 TTTSDFLIVYDSDVVNFACQETSWVIDSGASIHATPRKDFFTSYTFSDFGSVRMGNDGLA 81
Query: 1675 KVIGIDNIYLRISNNSQLLLPDVSHAP-ILVEFYFSWET***WLRNSFDGEIRKLSKGSF 1851
K IG+ ++ L SN + L L +V H P I + + + L N+F KL++GS
Sbjct: 82 KAIGMGDVRLETSNGTMLTLKNVKHIPDIRMNLISTRKLDDEGLCNTFRDSQWKLTRGSM 141
Query: 1852 IVARGKKYYNLYLMQASISSGSVHVMDCKYSTNL*HKRLNHISEKCLCYLIQIKVISLVS 2031
++ + K +LYLMQ + S++ +D + L H RL+H+SEK L + + ++S +
Sbjct: 142 VITKENKSSSLYLMQVRVIDSSINAVDDDSTFKLWHNRLSHMSEKGLMIMAKKNLLSGMK 201
Query: 2032 TTKLEQCAHCLAGKKTQVSFKTNPPSRKLKLLELIHSDVCDPFEVQSLGGVSYLVTFIDD 2211
L++CAHCL GK+T+V+FKT +RK +L+L++SDVC P + ++LGG Y VTFIDD
Sbjct: 202 KGSLKRCAHCLGGKQTRVAFKTLHHTRKPGMLDLVYSDVCGPMKTKTLGGSLYFVTFIDD 261
Query: 2212 HSRKL*IYPLKTKDQALEKFKQFQASFEREIENKIKCIRVDNG 2340
HSRK+ +Y LKTKDQ L+ FKQF A ER+ K+KCI++DNG
Sbjct: 262 HSRKIWVYTLKTKDQVLDVFKQFHALVERQSGEKLKCIQIDNG 304
Score = 162 bits (411), Expect(4) = e-151
Identities = 86/160 (53%), Positives = 109/160 (68%), Gaps = 6/160 (3%)
Frame = +3
Query: 2346 YCGPFD*YCKQQGIRHQKTP*----LNGLAERMNRTIVKRVQCLLLEAEFLSPF-GVKL* 2510
Y PFD YC+Q GIRHQKTP LNGLAE MNRT+V+RV+CLL +++ F G L
Sbjct: 307 YSSPFDEYCRQHGIRHQKTPPKTPQLNGLAESMNRTLVERVRCLLSQSQLPRSFWGEALN 366
Query: 2511 IQLFMSSIYLLLFLCMEILQRSFG*-EASYDYLRGFGCKVYIHVPKDEKSKLDSKTRQCV 2687
+ + ++ + L ++ R + E YD+LR FGCK ++H+PKDE SKLD+KTR CV
Sbjct: 367 TVVHLLNLTPCVPLEFDVPDRIWSNNEICYDHLRVFGCKAFVHIPKDEISKLDAKTRPCV 426
Query: 2688 FLGYGQDEFRYRLYDPVVKKLVRSRDVIFFEDQIIDDFEK 2807
F+GYG DE YR YDP+ KKLVRSRDV+F ED I D EK
Sbjct: 427 FIGYGHDELGYRFYDPMQKKLVRSRDVVFMEDHTIQDIEK 466
Score = 127 bits (319), Expect(4) = e-151
Identities = 85/231 (36%), Positives = 107/231 (46%)
Frame = +3
Query: 3186 EGKTALKNR*VYRLKHEEHSSHPQYKYILVV*GFSQRRCVEFSKIFSPVEKMSSIRIVLV 3365
+GK ALKNR VYR+K EEH+S P+YK LVV GF+Q++
Sbjct: 600 KGKRALKNRWVYRVKQEEHTSQPRYKARLVVKGFNQKK---------------------- 637
Query: 3366 LAISPNIKIEQMDVKTTFFHGDLEEEIYTEQSEGFQVKGKEDYVCRLKKICYGLKQALR* 3545
++EIY EQ EGF +KGKEDYV +LKK YGLKQA R
Sbjct: 638 -----------------------DKEIYMEQQEGFVLKGKEDYVSKLKKSLYGLKQAPR- 673
Query: 3546 WYKKFRSVMSKQGYRKTTSDHCVFVQKFSVDAFIILSLYVVDMLIVGKNIEMIDRLKQEL 3725
N+ ID LK++L
Sbjct: 674 ------------------------------------------------NVSRIDNLKKQL 685
Query: 3726 NKSFVIKDLGPAK*IFGVKISRDRKAMKLWLSQENYIQKVLQRFRMDKSKV 3878
+KSF +KDLGP K I G++I RDR + KL + QE YI+KVL RF M K+KV
Sbjct: 686 SKSFAMKDLGPVKRILGIRIERDRASKKLCMLQEQYIEKVLARFNMSKAKV 736
Score = 84.0 bits (206), Expect(4) = e-151
Identities = 49/112 (43%), Positives = 67/112 (59%), Gaps = 7/112 (6%)
Frame = +1
Query: 2878 TQTESDPQTNEHDMDDIGTPN----DDVTDMQPPTTVDLPKEPDEALFRRSTRVRQPSTR 3045
TQ E + ++HDM D+ TP DD Q PT + P + RRSTR R STR
Sbjct: 491 TQVEDEAHDDQHDMGDVETPTQVEVDDDVHEQSPTA----EAPLDIPLRRSTRDRHLSTR 546
Query: 3046 YAPNEFVLLAGGGEPECYEDAIESEQK---CNAMDDEMKSLFENHIFDLVRV 3192
Y+ +++VLL GGEPE Y +A+E E K +A+ +EM+SL ENH F LV++
Sbjct: 547 YSVDDYVLLTDGGEPESYVEAMEDENKMKWVDAIQNEMESLHENHSFKLVKL 598
Score = 84.3 bits (207), Expect(2) = 9e-27
Identities = 40/73 (54%), Positives = 54/73 (73%)
Frame = +2
Query: 3875 SWDVVSWQSLLHGFVALSITKAEFIAATEACKELVWIRKPLKELRYSQGKYVLHCDSLSA 4054
S VSWQS L VALS T+AE+IAA EACKEL+W++ ++EL + Q +YV++CD+ S
Sbjct: 831 SGGAVSWQSRLQKCVALSTTEAEYIAAAEACKELLWMKCFMQELGFKQQRYVVYCDNQSP 890
Query: 4055 IHLGKNPTFHFKS 4093
IHL KN T+H +S
Sbjct: 891 IHLSKNSTYHARS 903
Score = 66.6 bits (161), Expect(2) = 9e-27
Identities = 33/53 (62%), Positives = 37/53 (69%), Gaps = 1/53 (1%)
Frame = +1
Query: 4096 HIDVRYHWIHDVLN-KLADFEKFHTDNNGVDMLTKVLPRWKFEVCRSLA*MAS 4251
HI VRYHW+ D LN L + EK HT+NNG DMLTK LPR K VC S+A M S
Sbjct: 905 HIHVRYHWMRDALNDNLLEIEKIHTNNNGSDMLTKTLPREKLGVCCSIAGMIS 957
>gb|AAK29467.1| polyprotein-like [Solanum chilense]
Length = 1328
Score = 233 bits (594), Expect(4) = e-142
Identities = 123/230 (53%), Positives = 165/230 (71%)
Frame = +3
Query: 3186 EGKTALKNR*VYRLKHEEHSSHPQYKYILVV*GFSQRRCVEFSKIFSPVEKMSSIRIVLV 3365
+GK LK + V++LK + + +YK LVV GF Q++ ++F +IFSPV KM+SIR +L
Sbjct: 851 KGKRPLKCKWVFKLKKDGNGKLVRYKARLVVKGFEQKKGIDFDEIFSPVVKMTSIRTILS 910
Query: 3366 LAISPNIKIEQMDVKTTFFHGDLEEEIYTEQSEGFQVKGKEDYVCRLKKICYGLKQALR* 3545
+A S ++++EQ+DVKT F HGDLEEEIY EQ EGF+V GK+ VC+L K YGLKQA R
Sbjct: 911 IAASLDLEVEQLDVKTAFLHGDLEEEIYMEQGEGFEVSGKKHMVCKLNKSLYGLKQAPRQ 970
Query: 3546 WYKKFRSVMSKQGYRKTTSDHCVFVQKFSVDAFIILSLYVVDMLIVGKNIEMIDRLKQEL 3725
WYKKF S M Q YR T S CV+ ++FS FIIL LY MLIVGK+ E+I +L+++
Sbjct: 971 WYKKFDSFMKSQTYRNTYSHPCVYFKRFSDKNFIILLLYTDYMLIVGKDKELIAKLRKDF 1030
Query: 3726 NKSFVIKDLGPAK*IFGVKISRDRKAMKLWLSQENYIQKVLQRFRMDKSK 3875
+KSF +KDLGPAK I G+KI+R+ + KL LS E YI++VL+RF M +K
Sbjct: 1031 SKSFDMKDLGPAKQILGMKIAREEQ-KKLGLSHEKYIERVLERFNMKSAK 1079
Score = 176 bits (445), Expect(4) = e-142
Identities = 104/278 (37%), Positives = 153/278 (55%), Gaps = 1/278 (0%)
Frame = +1
Query: 1510 LLIVYDERVIHYTSHDTN*VADIGVALHATAKKEFFPSYTPSDYRILRMGNISMSKVIGI 1689
LLI +E +H ++ V D + HAT ++ F Y DY ++MGN S SK+ GI
Sbjct: 277 LLINEEEECMHLAGTESEWVVDTAASYHATPVRDLFCRYVAGDYGNVKMGNTSYSKIAGI 336
Query: 1690 DNIYLRISNNSQLLLPDVSHAPIL-VEFYFSWET***WLRNSFDGEIRKLSKGSFIVARG 1866
+I + + L+L DV H P L + N F + +L+KG+ ++A+G
Sbjct: 337 GDICFKTNVGCTLVLKDVRHVPDLRMNLISGIALDQDGYENYFANQKWRLTKGALVIAKG 396
Query: 1867 KKYYNLYLMQASISSGSVHVMDCKYSTNL*HKRLNHISEKCLCYLIQIKVISLVSTTKLE 2046
LY A I G ++ + S +L HKR+ H SEK L L + +IS T ++
Sbjct: 397 VARGTLYRTNAEICQGELNAAHEENSADLWHKRMGHTSEKGLQILSKKSLISFTKGTTIK 456
Query: 2047 QCAHCLAGKKTQVSFKTNPPSRKLKLLELIHSDVCDPFEVQSLGGVSYLVTFIDDHSRKL 2226
C + L GK+ +VSF+T+ RK +L+L++SDVC P E++S+GG Y VTFIDD SRKL
Sbjct: 457 PCNYWLFGKQHRVSFQTSS-ERKSNILDLVYSDVCGPMEIESMGGNKYFVTFIDDASRKL 515
Query: 2227 *IYPLKTKDQALEKFKQFQASFEREIENKIKCIRVDNG 2340
+Y + KDQ + F++F A ERE K K +R DNG
Sbjct: 516 WVYIFRAKDQVFQVFQKFHALVERETGRKRKRLRTDNG 553
Score = 122 bits (305), Expect(4) = e-142
Identities = 67/150 (44%), Positives = 99/150 (66%), Gaps = 6/150 (4%)
Frame = +3
Query: 2358 FD*YCKQQGIRHQKT----P*LNGLAERMNRTIVKRVQCLLLEAEFLSPF-GVKL*IQLF 2522
F+ YC GIRH+KT P NG+AERMNRTIV++V+ +L A+ F G + +
Sbjct: 561 FEEYCSNHGIRHEKTVPGTPQHNGVAERMNRTIVEKVRSMLRMAKLPKTFWGEAVRTACY 620
Query: 2523 MSSIYLLLFLCMEILQRSF-G*EASYDYLRGFGCKVYIHVPKDEKSKLDSKTRQCVFLGY 2699
+ + + L +I +R + E SY +L+ FGCK + HVPK++++KLD K+ C+F+GY
Sbjct: 621 LINRSPSVPLEFDIPERVWTNKEMSYSHLKVFGCKAFAHVPKEQRTKLDDKSVPCIFIGY 680
Query: 2700 GQDEFRYRLYDPVVKKLVRSRDVIFFEDQI 2789
G +EF YRL+D V KK++RSRDVIF E ++
Sbjct: 681 GDEEFGYRLWDLVKKKVIRSRDVIFRESEV 710
Score = 48.5 bits (114), Expect(4) = e-142
Identities = 36/119 (30%), Positives = 57/119 (47%), Gaps = 6/119 (5%)
Frame = +1
Query: 2854 VPNTVEGGTQTES---DPQTNEHDMDDIGTPNDDVTDMQPPTTVDLPKEPDEALFRRSTR 3024
+P++ T ES + E D+I + + D ++ P+E RRS R
Sbjct: 733 IPSSSNHPTSAESTIDEVVEQEEQPDEIVEQGEQLGDNTEQ--MEYPEEEQSQPLRRSER 790
Query: 3025 VRQPSTRYAPNEFVLLAGGGEPECYEDAI---ESEQKCNAMDDEMKSLFENHIFDLVRV 3192
R ST+Y +E+VL+ GEPE ++ + E Q AM +EM SL +N + LV +
Sbjct: 791 QRVESTKYPSSEYVLIKYEGEPENLKEVLSHPEKSQWMKAMHEEMGSLQKNGTYQLVEL 849
Score = 70.9 bits (172), Expect(2) = 1e-15
Identities = 31/66 (46%), Positives = 48/66 (72%)
Frame = +2
Query: 3887 VSWQSLLHGFVALSITKAEFIAATEACKELVWIRKPLKELRYSQGKYVLHCDSLSAIHLG 4066
+SWQS L +VALS T+A++IA TE CKE++W+++ L+E Q +YV++C+S SA+ L
Sbjct: 1205 ISWQSKLQKYVALSTTEAKYIAGTEVCKEMLWLKRFLQEHGLHQKEYVVYCESQSAMDLS 1264
Query: 4067 KNPTFH 4084
K +H
Sbjct: 1265 KKAMYH 1270
Score = 42.7 bits (99), Expect(2) = 1e-15
Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Frame = +1
Query: 4096 HIDVRYHWIHDVLNK-LADFEKFHTDNNGVDMLTKVLPRWKFEVCRSLA*MAS 4251
HID+RYHWI ++++ K T N DM+TKV+ KFE+ + L M S
Sbjct: 1275 HIDMRYHWIREMVDDGSLQVVKIPTSENPADMVTKVVQNEKFELWKELVGMHS 1327
Score = 78.6 bits (192), Expect = 3e-11
Identities = 49/146 (33%), Positives = 82/146 (56%), Gaps = 2/146 (1%)
Frame = +3
Query: 825 PEPKCDKEWEFEHKQVCAYIRSWVEENVRNHIANSTNAQVLWEKFENMYASKTGKNKLFC 1004
PE ++WE ++ + IR + ++V N+I + +A +W K EN+Y SKT NKL+
Sbjct: 45 PESMKLEDWEELDEKAASAIRLHLTDDVVNNIVDEESACGIWTKLENLYMSKTLTNKLYL 104
Query: 1005 L--IITLRYKEGTTVMDYVNKF*GFVDQLSNVGVVFEDEILGLWLLNTLSSSWETFPVSY 1178
+ TL EGT + ++N G + QL+N+GV E+E + LLN+L SS++T +
Sbjct: 105 KKQLYTLHMDEGTNFLSHLNVLNGLITQLANLGVKIEEEDKRIVLLNSLPSSYDTLSTTI 164
Query: 1179 TNTAALVVMCLEYTKAGIPNEKVRIK 1256
+ + + + T A + NEK+R K
Sbjct: 165 LHGKDSIQL-KDVTSALLLNEKMRKK 189
>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
copia LTR rider [Solanum lycopersicum]
Length = 1307
Score = 210 bits (535), Expect(5) = e-113
Identities = 108/207 (52%), Positives = 147/207 (71%)
Frame = +3
Query: 3255 QYKYILVV*GFSQRRCVEFSKIFSPVEKMSSIRIVLVLAISPNIKIEQMDVKTTFFHGDL 3434
+YK +V GF+QR V++++IFSPV + +SIR++L + N+++EQ+DVKT F HG+L
Sbjct: 854 KYKARVVARGFNQREGVDYNEIFSPVVRHTSIRVLLAIVAHQNLELEQLDVKTAFLHGEL 913
Query: 3435 EEEIYTEQSEGFQVKGKEDYVCRLKKICYGLKQALR*WYKKFRSVMSKQGYRKTTSDHCV 3614
EEEIY Q +GFQV GKE++VC+LKK YGLKQ+ R WYK+F S M K GY +++ D CV
Sbjct: 914 EEEIYMTQPDGFQVPGKENHVCKLKKSLYGLKQSPRQWYKRFDSYMVKLGYTRSSYDCCV 973
Query: 3615 FVQKFSVDAFIILSLYVVDMLIVGKNIEMIDRLKQELNKSFVIKDLGPAK*IFGVKISRD 3794
+ + + D+FI L LYV DMLI K I +LK L+ F +KDLG A+ I G++I RD
Sbjct: 974 YYNRLNDDSFIYLVLYVDDMLIAAKKKYDIQKLKGLLSAEFEMKDLGAARKILGMEIIRD 1033
Query: 3795 RKAMKLWLSQENYIQKVLQRFRMDKSK 3875
R+ KL+LSQ +YIQKVL RF M SK
Sbjct: 1034 RERRKLFLSQRSYIQKVLARFGMSSSK 1060
Score = 141 bits (355), Expect(5) = e-113
Identities = 96/297 (32%), Positives = 148/297 (49%), Gaps = 14/297 (4%)
Frame = +1
Query: 1492 TTTLEDLLIVYDERVIHYTSHDTN*VADIGVALHATAKKEFFPSYTPSDYRILRMGNISM 1671
T + ED+ +V DE +T H V D G + H ++E+F +Y D + M N S+
Sbjct: 259 TNSEEDIALVADE----HTHHSDVWVLDSGASYHICPRREWFTTYEQVDGGSISMANSSV 314
Query: 1672 SKVIGIDNIYLRISNNSQLLLPDVSHAPILVEFY----------FSWET***WLRNSFDG 1821
KV+G +I +R + S L +V H P++ + FSW + DG
Sbjct: 315 CKVVGTGSIKIRTHDGSFCTLNEVRHVPLMTKNLISLSLLDSKGFSW--------SGKDG 366
Query: 1822 EIRKLSKGSFIVARGKKYYNLYLMQASISSGSVHVMDCKYS----TNL*HKRLNHISEKC 1989
+R + KGS ++ +G LY +Q S +GS HV ++ T L H RL H+ E+
Sbjct: 367 VLR-VWKGSNLILKGVMRGTLYFLQGSTVTGSAHVASSEFHQKDMTKLWHIRLGHMGERG 425
Query: 1990 LCYLIQIKVISLVSTTKLEQCAHCLAGKKTQVSFKTNPPSRKLKLLELIHSDVCDPFEVQ 2169
+ L + +++ LE C HC+ GK + F R L+ IHSD P V+
Sbjct: 426 MQILSKEDLLAGHKVKSLEFCEHCVFGKLHRNKFP-KAIHRTKGTLDYIHSDCWGPCRVE 484
Query: 2170 SLGGVSYLVTFIDDHSRKL*IYPLKTKDQALEKFKQFQASFEREIENKIKCIRVDNG 2340
SLGG + V+ IDD+SR +Y +K K +A +KFK+++ E + KIK +R DNG
Sbjct: 485 SLGGCRFFVSIIDDYSRMTWVYMMKHKSEAFQKFKEWKILMENQTGKKIKRLRTDNG 541
Score = 83.6 bits (205), Expect(5) = e-113
Identities = 51/155 (32%), Positives = 84/155 (54%), Gaps = 10/155 (6%)
Frame = +3
Query: 2358 FD*YCKQQGI-RHQ---KTP*LNGLAERMNRTIVKRVQCLLLEAEFLSPFGVKL*IQLFM 2525
FD +CK +GI RH+ TP NG+AERMN+T+++R +C+L A F +
Sbjct: 549 FDQFCKDEGIARHRTVRNTPQQNGVAERMNQTLLERARCMLSNAGLDRRFWA----EAVS 604
Query: 2526 SSIYLLL------FLCMEILQRSFG*EASYDYLRGFGCKVYIHVPKDEKSKLDSKTRQCV 2687
++ YL+ C ++ G A Y L+ FGC Y HV + KL+ + ++ V
Sbjct: 605 TACYLINRGPHTGIQCKTPMEMWSGKAADYSNLKAFGCTAYYHV---SEGKLEPRAKKGV 661
Query: 2688 FLGYGQDEFRYRLYDPVVKKLVRSRDVIFFEDQII 2792
F+GYG +R++ P K+++ SR+V+F E ++
Sbjct: 662 FVGYGDGVKGFRIWSPAEKRVIMSRNVVFDESPLL 696
Score = 41.6 bits (96), Expect(5) = e-113
Identities = 36/118 (30%), Positives = 55/118 (46%), Gaps = 16/118 (13%)
Frame = +1
Query: 2881 QTESDPQTNEHDMDDIGTPNDDVTDMQPPTTVDLPKEPDEALFRRSTRVR------QPST 3042
Q E NE D+ + P ++ D +P T D+P+ + + + R +P T
Sbjct: 714 QVEFQVIQNESDLKE---PEEE--DQEPQTETDIPESMPSDIHQSIAQDRPRRVGVRPPT 768
Query: 3043 RYAPNEFVLLA-------GGGEPECYEDAI---ESEQKCNAMDDEMKSLFENHIFDLV 3186
RY + V A EP Y++AI +SE+ AM DEM+SL +N +DLV
Sbjct: 769 RYGFEDMVGYALQVAEEVDTSEPSTYKEAILSSDSEKWFAAMGDEMESLHKNQTWDLV 826
Score = 25.4 bits (54), Expect(5) = e-113
Identities = 13/38 (34%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
Frame = +2
Query: 1379 HYCGKKGYIKRNCFKWKR--EKKNGSNSETKKDGGSDQ 1486
+YC +KG+ K +C K K+ EK++ S + ++D S++
Sbjct: 226 NYCKEKGHWKFDCPKKKKQSEKQSVSAAVAEEDTNSEE 263
Score = 59.3 bits (142), Expect(2) = 4e-11
Identities = 29/67 (43%), Positives = 43/67 (64%)
Frame = +2
Query: 3884 VVSWQSLLHGFVALSITKAEFIAATEACKELVWIRKPLKELRYSQGKYVLHCDSLSAIHL 4063
VVSW++ L V LS T+AE++A TEA KE +W++ + +L + ++CDSLSAI L
Sbjct: 1186 VVSWKATLQPTVTLSTTEAEYMALTEAAKEGIWLKGLVSDLGLHHDQATVYCDSLSAICL 1245
Query: 4064 GKNPTFH 4084
K+ H
Sbjct: 1246 AKDQVHH 1252
Score = 38.9 bits (89), Expect(2) = 4e-11
Identities = 20/47 (42%), Positives = 27/47 (57%)
Frame = +1
Query: 4096 HIDVRYHWIHDVLNKLADFEKFHTDNNGVDMLTKVLPRWKFEVCRSL 4236
HIDVRYH++ K +K T +N DM TK +P+ KF+ C L
Sbjct: 1257 HIDVRYHFLRS--EKRIKVKKVGTADNPADMFTKPVPQSKFQHCLDL 1301
>gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]
Length = 1297
Score = 207 bits (528), Expect(4) = e-111
Identities = 112/222 (50%), Positives = 147/222 (66%), Gaps = 1/222 (0%)
Frame = +3
Query: 3216 VYRLKHEEHSSHP-QYKYILVV*GFSQRRCVEFSKIFSPVEKMSSIRIVLVLAISPNIKI 3392
V+R K H YK LV G+SQ+ V++ +IFSPV K +SIR++L +A +++I
Sbjct: 831 VFRKKEGIHEDDAITYKARLVAKGYSQKEGVDYDEIFSPVVKHTSIRLLLSIAAQYDMEI 890
Query: 3393 EQMDVKTTFFHGDLEEEIYTEQSEGFQVKGKEDYVCRLKKICYGLKQALR*WYKKFRSVM 3572
EQMDVKT F HGDLEE+IY Q EGF GKE+ VCRLKK YGLKQ+ R WYK F + M
Sbjct: 891 EQMDVKTAFLHGDLEEDIYMSQPEGFVETGKENLVCRLKKSLYGLKQSPRQWYKPFDTYM 950
Query: 3573 SKQGYRKTTSDHCVFVQKFSVDAFIILSLYVVDMLIVGKNIEMIDRLKQELNKSFVIKDL 3752
K GY + D CV+ F I+L LYV DMLI +++ I +LK++L F +KDL
Sbjct: 951 LKIGYTRCQYDCCVYYHVFEDGKVILLLLYVDDMLIACRDMLQIQKLKKKLGAEFDMKDL 1010
Query: 3753 GPAK*IFGVKISRDRKAMKLWLSQENYIQKVLQRFRMDKSKV 3878
G A+ I G++I RDR A K+WLSQE YI K+L+RF M ++KV
Sbjct: 1011 GAAQKILGIEIRRDRNAGKIWLSQEKYIMKILERFNMAEAKV 1052
Score = 136 bits (342), Expect(4) = e-111
Identities = 97/305 (31%), Positives = 155/305 (50%), Gaps = 12/305 (3%)
Frame = +1
Query: 1462 KERWWQ*SGSTTTLEDLLIVYDERVIHYTSHDTN*VA------DIGVALHATAKKEFFPS 1623
KE+ Q SG ++ L +++I Y++ + T+ A D H A +++F +
Sbjct: 223 KEKKAQMSGESSQLANVVIGYNDEDGELLAISTSSGAPRHWTLDTACTFHTCAHRDWFDT 282
Query: 1624 YTPSDYRILRMGNISMSKVIGIDNIYLRISNNSQLLLPDVSHAPILVEFYFSWET***WL 1803
Y + R + MGN S S+++GI + +R+ + L +V H P L S T
Sbjct: 283 YKEGNTRSVLMGNDSPSRIMGIGMVKIRMHDGIVRALGNVRHTPGLNRNLISLST---MD 339
Query: 1804 RNSF----DGEIRKLSKGSFIVARGK-KYYNLYLMQASISSGSVHVMDCKYSTNL*HKRL 1968
R F + K+ KG + +G + N+Y + S G V + T L +RL
Sbjct: 340 RVGFWHKGQNGVLKVGKGQMVYMKGAIQPDNMYKLTGSTVEGGAGVCTEEDKTELWRRRL 399
Query: 1969 NHISEKCLCYLIQIKVISLVSTTKLEQCAHCLAGKKTQVSFKTNPPSRKLK-LLELIHSD 2145
H+S++ L L + + + V + LE C +C GK+T+VSF + K K +L+ IH+D
Sbjct: 400 GHMSQRGLQELHKKEQLDGVMSAALEFCRYCTLGKQTRVSFNLSSSENKSKGVLDYIHTD 459
Query: 2146 VCDPFEVQSLGGVSYLVTFIDDHSRKL*IYPLKTKDQALEKFKQFQASFEREIENKIKCI 2325
V P S GG Y V+FIDD SRK+ I+ +KTK++ KFK+++A + KIKC+
Sbjct: 460 VWGPSATISKGGARYFVSFIDDFSRKVWIFFMKTKNEVFTKFKEWKAEVGNQTGRKIKCL 519
Query: 2326 RVDNG 2340
R DNG
Sbjct: 520 RSDNG 524
Score = 89.7 bits (221), Expect(4) = e-111
Identities = 61/166 (36%), Positives = 92/166 (55%), Gaps = 9/166 (5%)
Frame = +3
Query: 2370 CKQQGI-RH---QKTP*LNGLAERMNRTIVKRVQCLLLEA----EFLSPFGVKL*IQLFM 2525
CK +GI RH +K+P NG+AERMNRT++++ + + A EF + +
Sbjct: 536 CKDEGITRHFTVKKSPQQNGVAERMNRTLMEKERSMRFHAGLPEEFWAEAANHACYLINR 595
Query: 2526 SSIYLLLFLCMEILQRSFG*EASYDYLRGFGCKVYIHVPKDEKSKLDSKTRQCVFLGYGQ 2705
S + F C E + G Y LR FGC Y H+PKDE++KL+ K+ +C+F+G+ +
Sbjct: 596 SPSRAINFKCAEEVWS--GKPVDYSNLRVFGCSAYAHIPKDERTKLEPKSLECLFIGFEK 653
Query: 2706 DEFRYRLYDPVVKKLVRSRDVIFFEDQIID-DFEKV*KAGSESQYD 2840
Y+L+D V +K V SRDV+F E + I K A SE+Q +
Sbjct: 654 GVKGYKLWDIVNEKKVISRDVVFDEREAISISLAKPSVADSEAQVE 699
Score = 40.8 bits (94), Expect(4) = e-111
Identities = 38/128 (29%), Positives = 60/128 (46%), Gaps = 27/128 (21%)
Frame = +1
Query: 2884 TESDPQTNEHDMDDIGTPNDDVTDMQPPTTV-------------DLPKEPDEALFRRST- 3021
+E+ + NE D++ ++ Q PT + +P+ P+ F+RS
Sbjct: 694 SEAQVEQNEQGNDEVAI--EEPEHQQQPTVMAQVEQSPQRGQNSPIPQAPES--FKRSIA 749
Query: 3022 -----RVRQPSTRYA--PNEFV---LLAGGGEPECYEDAIESEQKCN---AMDDEMKSLF 3162
R R+P R+ P E V L G+P YEDAIES + AM +EM+SL
Sbjct: 750 LDKPKRNRKPIQRFGFEPEEDVSRALSISQGDPTTYEDAIESVESAGWIGAMTEEMESLH 809
Query: 3163 ENHIFDLV 3186
+N +++LV
Sbjct: 810 KNSVWELV 817
Score = 65.5 bits (158), Expect(2) = 5e-12
Identities = 32/69 (46%), Positives = 43/69 (62%)
Frame = +2
Query: 3887 VSWQSLLHGFVALSITKAEFIAATEACKELVWIRKPLKELRYSQGKYVLHCDSLSAIHLG 4066
VSW++ L ALS T+AE++A TEA KE +W+ +L Q V+ CDS SAIHL
Sbjct: 1179 VSWKATLQAVTALSTTEAEYMALTEASKEAIWLNGLAGQLGVHQEGVVVKCDSQSAIHLA 1238
Query: 4067 KNPTFHFKS 4093
KN FH ++
Sbjct: 1239 KNQVFHART 1247
Score = 35.8 bits (81), Expect(2) = 5e-12
Identities = 18/35 (51%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +1
Query: 4096 HIDVRYHWIHDVLNK-LADFEKFHTDNNGVDMLTK 4197
HID RYH I D + + EK HTD+N D LTK
Sbjct: 1249 HIDARYHRIRDWVEAGVIIVEKVHTDDNAADFLTK 1283
>gb|AAV88069.1| hypothetical retrotransposon [Ipomoea batatas]
Length = 1415
Score = 246 bits (629), Expect(2) = e-110
Identities = 134/288 (46%), Positives = 181/288 (62%), Gaps = 1/288 (0%)
Frame = +1
Query: 1495 TTLEDLLIVYDERVIHYTSHDTN*VADIGVALHATAKKEFFPSYTPSDYRILRMGNISMS 1674
T DLL+ D+ VI+ H+T + D G A H T +KEFF SYTP D+ LRMGN
Sbjct: 266 TVRADLLVACDDNVINVACHETTWIVDSGAAYHVTPRKEFFTSYTPGDFGELRMGNDGQV 325
Query: 1675 KVIGIDNIYLRISNNSQLLLPDVSHAP-ILVEFYFSWET***WLRNSFDGEIRKLSKGSF 1851
KV G + L SN ++L+L +V HAP I + + + F K++KGS
Sbjct: 326 KVTGTGTVCLETSNGTKLVLKNVKHAPDIRLNLISTGKLDDDGFCCFFGDGHWKITKGSL 385
Query: 1852 IVARGKKYYNLYLMQASISSGSVHVMDCKYSTNL*HKRLNHISEKCLCYLIQIKVISLVS 2031
+VARG K NLY +Q+S+S SV+V++ + ++ L HKRL H+S K + YL + +S V
Sbjct: 386 VVARGNKSSNLYSLQSSVSDDSVNVVEKECASELWHKRLGHMSVKGIDYLAKKSKLSGVK 445
Query: 2032 TTKLEQCAHCLAGKKTQVSFKTNPPSRKLKLLELIHSDVCDPFEVQSLGGVSYLVTFIDD 2211
KL++C HCLAGK+ +VSF ++PP+RK + L+LIHSDVC P +V+SLGG SY VTFIDD
Sbjct: 446 EAKLDKCVHCLAGKQRRVSFMSHPPTRKSEPLDLIHSDVCGPMKVRSLGGASYFVTFIDD 505
Query: 2212 HSRKL*IYPLKTKDQALEKFKQFQASFEREIENKIKCIRVDNGCSIVG 2355
+SRKL +Y LK K L FK+F A ER+ K+KCIR DNG G
Sbjct: 506 YSRKLWVYTLKHKSDVLGVFKEFHALVERQTGKKLKCIRTDNGGEYCG 553
Score = 184 bits (466), Expect(2) = e-110
Identities = 93/161 (57%), Positives = 124/161 (77%), Gaps = 6/161 (3%)
Frame = +3
Query: 2346 YCGPFD*YCKQQGIRHQKTP*----LNGLAERMNRTIVKRVQCLLLEAEFLSPFGVK-L* 2510
YCGPFD YC++ GIRHQKTP LNGLAERMNRTI++RV+C+L +A+ S F + +
Sbjct: 551 YCGPFDEYCRRYGIRHQKTPPKIPQLNGLAERMNRTIMERVRCMLDDAKLPSSFWAEAVS 610
Query: 2511 IQLFMSSIYLLLFLCMEILQRSF-G*EASYDYLRGFGCKVYIHVPKDEKSKLDSKTRQCV 2687
+ + ++ ++ L E+ + + G + SYD+LR FGCK ++HVP+DE+SKLDSKTRQC+
Sbjct: 611 TAVHVINLSPVIALKNEVPDKVWCGKDVSYDHLRVFGCKAFVHVPRDERSKLDSKTRQCI 670
Query: 2688 FLGYGQDEFRYRLYDPVVKKLVRSRDVIFFEDQIIDDFEKV 2810
F+GYG DEF YRLYDPV KKLVRSRDV+FFE+Q I+D +KV
Sbjct: 671 FIGYGFDEFGYRLYDPVEKKLVRSRDVVFFENQTIEDIDKV 711
Score = 305 bits (780), Expect(2) = 2e-96
Identities = 154/230 (66%), Positives = 186/230 (80%)
Frame = +3
Query: 3186 EGKTALKNR*VYRLKHEEHSSHPQYKYILVV*GFSQRRCVEFSKIFSPVEKMSSIRIVLV 3365
+ + ALKNR VYR+KHEE +S P++K LVV GFSQ++ ++F +IFSPV K SSIR+VL
Sbjct: 848 KNRKALKNRWVYRVKHEEGTSVPRFKARLVVKGFSQKKGIDFDEIFSPVVKFSSIRVVLG 907
Query: 3366 LAISPNIKIEQMDVKTTFFHGDLEEEIYTEQSEGFQVKGKEDYVCRLKKICYGLKQALR* 3545
LA +I+IEQMDVKT F HGDL+EEIY EQ EGF+VKGKEDYVCRLKK YGLKQA R
Sbjct: 908 LAARLDIEIEQMDVKTAFLHGDLDEEIYMEQPEGFKVKGKEDYVCRLKKSLYGLKQAPRQ 967
Query: 3546 WYKKFRSVMSKQGYRKTTSDHCVFVQKFSVDAFIILSLYVVDMLIVGKNIEMIDRLKQEL 3725
WYKKF SVMSK GY+KT+SDHCVFV ++S D F+IL LYV DMLIVG+N I LKQEL
Sbjct: 968 WYKKFTSVMSKHGYKKTSSDHCVFVNRYSDDDFVILLLYVDDMLIVGRNASRIQELKQEL 1027
Query: 3726 NKSFVIKDLGPAK*IFGVKISRDRKAMKLWLSQENYIQKVLQRFRMDKSK 3875
+KSF +KD+GPAK I G+KI RDR+ KLWLSQE YI+KVL+RF M+++K
Sbjct: 1028 SKSFSMKDMGPAKQILGMKIIRDRQNKKLWLSQEKYIEKVLERFHMNEAK 1077
Score = 78.6 bits (192), Expect(2) = 2e-96
Identities = 49/145 (33%), Positives = 77/145 (53%), Gaps = 21/145 (14%)
Frame = +1
Query: 2818 QGQRVSMIPTHRVPNTVEGGTQTESDPQTNEH--DMDDI--GTPNDDVTDMQPPTTVDLP 2985
+ Q + I + P + + G+ + +P + + D+D++ N D TVD+
Sbjct: 701 ENQTIEDIDKVKQPESRDSGSLVDIEPVSRRYTDDVDEVQENVQNGDPVPDYQGDTVDVD 760
Query: 2986 KEPDEALF--------------RRSTRVRQPSTRYAPNEFVLLAGGGEPECYEDAIESEQ 3123
D+ + RRS R R+PSTRY+P+++VLL GGEPE YE+A+ES+Q
Sbjct: 761 GHADDVVHQEQEVPSQVPVDLPRRSDRERRPSTRYSPSQYVLLTDGGEPESYEEAMESDQ 820
Query: 3124 K---CNAMDDEMKSLFENHIFDLVR 3189
K AM +EM SL+ N F+LV+
Sbjct: 821 KRQWFEAMQEEMNSLYVNDTFELVK 845
Score = 185 bits (469), Expect(4) = 5e-60
Identities = 87/144 (60%), Positives = 109/144 (75%), Gaps = 2/144 (1%)
Frame = +3
Query: 825 PEPKCDKEWEFEHKQVCAYIRSWVEENVRNHIANSTNAQVLWEKFENMYASKTGKNKLFC 1004
PE D+EW+FEH+QVC YIR WVE+NV NHI N T+A+ LW K E +YASKTG NKLF
Sbjct: 42 PENMSDEEWDFEHQQVCGYIRQWVEDNVLNHIINETHARSLWNKLETLYASKTGNNKLFL 101
Query: 1005 L--IITLRYKEGTTVMDYVNKF*GFVDQLSNVGVVFEDEILGLWLLNTLSSSWETFPVSY 1178
L ++ +RY+EGT + D+VN F G +DQLS +G+ FEDE+LGLWLLNTL SWETF VS
Sbjct: 102 LKQMMNIRYREGTLINDHVNDFQGVLDQLSGMGIKFEDEVLGLWLLNTLPDSWETFRVSL 161
Query: 1179 TNTAALVVMCLEYTKAGIPNEKVR 1250
TN+A V+ +EY K+GI NE+ R
Sbjct: 162 TNSAPNGVVTMEYVKSGILNEEAR 185
Score = 67.8 bits (164), Expect(4) = 5e-60
Identities = 62/190 (32%), Positives = 84/190 (44%), Gaps = 14/190 (7%)
Frame = +2
Query: 1277 IRVTENRGRTKEKSQEGXXXXXXXXXXXYKDVE*HYCGKKGYIKRNCFKWKREKKNGSNS 1456
I VT++RGR K+K Q G YKD+E HYCGKK +IK+ FKWKREKK
Sbjct: 198 ILVTDDRGRNKQKGQRGRDKSRSKSRSRYKDIECHYCGKKSHIKKYSFKWKREKK----- 252
Query: 1457 ETKKDGGS-DQVXXXXXXXXXXCMMSV*FITL-LMTLIE*QILVLHFMLQPRKSFFLPTH 1630
+ KDG + +QV C +V + T I H + PRK FF T
Sbjct: 253 QDNKDGDTGNQVATVRADLLVACDDNVINVACHETTWIVDSGAAYH--VTPRKEFF--TS 308
Query: 1631 LVTIEY*EWAI------------LVCLK*LALIIST*GLVIIASYCFRMSVMLRY*LNFI 1774
++ E + VCL+ S +++ + + LN I
Sbjct: 309 YTPGDFGELRMGNDGQVKVTGTGTVCLE-----TSNGTKLVLKNVKHAPDIR----LNLI 359
Query: 1775 SVGRLDDDGF 1804
S G+LDDDGF
Sbjct: 360 STGKLDDDGF 369
Score = 26.6 bits (57), Expect(4) = 5e-60
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +1
Query: 760 EGKNEYLLFVKSFHLPVFES 819
+ K + LLFVK HLPVF S
Sbjct: 20 KAKMKDLLFVKKLHLPVFAS 39
Score = 24.3 bits (51), Expect(4) = 5e-60
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +2
Query: 707 EWNNGRMIYLNGSNYYNRKGRM 772
E N M+ LNG NY+ K +M
Sbjct: 2 ETNTSNMVRLNGRNYHIWKAKM 23
Score = 64.3 bits (155), Expect(2) = 4e-16
Identities = 28/43 (65%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Frame = +1
Query: 4096 HIDVRYHWIHDVLN-KLADFEKFHTDNNGVDMLTKVLPRWKFE 4221
HID RYHWI D+L K+ + EK HTD+NG DM+TK LPR KFE
Sbjct: 1251 HIDTRYHWIRDILECKMLELEKIHTDDNGSDMMTKALPRGKFE 1293
Score = 50.8 bits (120), Expect(2) = 4e-16
Identities = 25/46 (54%), Positives = 34/46 (73%)
Frame = +2
Query: 3887 VSWQSLLHGFVALSITKAEFIAATEACKELVWIRKPLKELRYSQGK 4024
VSWQS L V LS T+AEFIA+ EA KE++W++K L+EL + Q +
Sbjct: 1203 VSWQSRLQKCVDLSTTEAEFIASVEASKEMLWMKKFLQELGFVQDR 1248
>emb|CAN67644.1| hypothetical protein VITISV_028829 [Vitis vinifera]
Length = 831
Score = 189 bits (479), Expect(6) = e-109
Identities = 112/210 (53%), Positives = 134/210 (63%), Gaps = 16/210 (7%)
Frame = +3
Query: 3315 KIFSPVEKMSSIRIVLVLAISPNIKIEQMDVKTTFFHGDLEEEIYTEQSEGFQVKGKEDY 3494
+IFSPV MSSIR+V LA S N++IEQ+DVKT FFHGDLEEEIY E+ +GF +KGKE
Sbjct: 462 EIFSPVVTMSSIRVVFGLAASMNLEIEQLDVKTVFFHGDLEEEIYMERPKGFTIKGKEAL 521
Query: 3495 VCRLKKICYGLKQALR*WYKKFRSVMSKQGYRKTTSDHCVFVQKFSVDAFIILSLYVVDM 3674
VCRLKK YGLKQA R WYKKF S M + Y KT S+HCVFV+KFS FIIL LYV DM
Sbjct: 522 VCRLKKSLYGLKQAPRQWYKKFDSFMVEHRYDKTISNHCVFVKKFSNGEFIILLLYVDDM 581
Query: 3675 LIVGKNIEMIDRLKQELNKSFVIKDLGPAK*IFGV------------KISRDRKAMKLWL 3818
LIVG + ID+LK+EL+KSF +KDLG I V I K + +L
Sbjct: 582 LIVGCDTSKIDKLKKELSKSFEMKDLGSTSQILVVDSLMYAMVCTRLDIVHAVKVVSRFL 641
Query: 3819 SQEN----YIQKVLQRFRMDKSKVGMLCHG 3896
S + K + ++ MD SK LC G
Sbjct: 642 SNPGKTHWVVMKWILKYLMDTSKT-CLCFG 670
Score = 85.5 bits (210), Expect(6) = e-109
Identities = 42/73 (57%), Positives = 53/73 (72%)
Frame = +2
Query: 3875 SWDVVSWQSLLHGFVALSITKAEFIAATEACKELVWIRKPLKELRYSQGKYVLHCDSLSA 4054
S VSWQS L VALS TKAE+IA TEA EL+W++K L++L Q +Y+L+CDS +
Sbjct: 702 SGGAVSWQSRLQKCVALSTTKAEYIAITEASNELLWMKKFLQKLGLQQERYLLYCDSQNV 761
Query: 4055 IHLGKNPTFHFKS 4093
IHL KNPTFH +S
Sbjct: 762 IHLNKNPTFHSRS 774
Score = 77.4 bits (189), Expect(6) = e-109
Identities = 58/174 (33%), Positives = 78/174 (44%), Gaps = 6/174 (3%)
Frame = +3
Query: 2346 YCGPFD*YCKQQGIRHQKT----P*LNGLAERMNRTIVKRVQCLLLEAEFLSPFGVKL*I 2513
Y GPF+ YC+ GIR +KT P NG+AERMNRT R++C+ A+
Sbjct: 220 YRGPFEQYCRIHGIRLKKTVPKTPQQNGVAERMNRTFYDRIRCMFSHAK----------- 268
Query: 2514 QLFMSSIYLLLFLCMEILQRSFG*EASYDYLRGFGCKVYIHVPKDEKSKLDSKTRQCVFL 2693
L +SF EA + H+ D +
Sbjct: 269 -----------------LPKSFWGEAMRTTMDLINLSPSYHLEGDIPGR----------- 300
Query: 2694 GYGQDEFRYRLYDPVVKKLVRSRDVIFFEDQIIDDF--EKV*KAGSESQYDTHT 2849
F YRL+DP +KK++RSRDV+FF+DQII+D +K K SE Q D T
Sbjct: 301 ------FGYRLWDPAIKKIIRSRDVVFFKDQIIEDLDQDKKLKPFSEEQVDLGT 348
Score = 62.0 bits (149), Expect(6) = e-109
Identities = 34/98 (34%), Positives = 58/98 (59%), Gaps = 3/98 (3%)
Frame = +1
Query: 2908 EHDMDDIGTPNDDVTDMQPPTTVDLPKEPDEALFRRSTRVRQPSTRYAPNEFVLLAGGGE 3087
E +D + ++ D Q T+++P E RRSTR QPS RY +E++LL+ G E
Sbjct: 365 EEQVDIVNRNDESAVDDQKQVTLEVPTETQ---LRRSTRECQPSRRYTSDEYLLLSDGIE 421
Query: 3088 PECYEDAI---ESEQKCNAMDDEMKSLFENHIFDLVRV 3192
P+ Y++ + E ++ AM +EMKSL +N+ ++L+ +
Sbjct: 422 PKNYQEVLLHDEKKEWLRAMYEEMKSLHKNNTYELMEL 459
Score = 55.1 bits (131), Expect(6) = e-109
Identities = 27/49 (55%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Frame = +1
Query: 4096 HIDVRYHWIHDVLN-KLADFEKFHTDNNGVDMLTKVLPRWKFEVCRSLA 4239
HI VRYHW D L KL EK HTD NG DM+TK +P K + CR A
Sbjct: 776 HIYVRYHWTRDALEMKLFCLEKIHTDENGSDMMTKPIPTEKVQFCRKQA 824
Score = 42.4 bits (98), Expect(6) = e-109
Identities = 17/36 (47%), Positives = 25/36 (69%)
Frame = +1
Query: 2233 YPLKTKDQALEKFKQFQASFEREIENKIKCIRVDNG 2340
Y LK+KDQ L+ FK F ER+ +N++K +R +NG
Sbjct: 182 YALKSKDQVLDVFKYFHVKVERQTDNQLKSVRANNG 217
>emb|CAN80131.1| hypothetical protein VITISV_012432 [Vitis vinifera]
Length = 881
Score = 177 bits (448), Expect(5) = e-105
Identities = 105/285 (36%), Positives = 149/285 (52%), Gaps = 3/285 (1%)
Frame = +1
Query: 1495 TTLEDLLIVYDERVIHYTSHDTN*VADIGVALHATAKKEFFPSYTPSDYRILRMGNISMS 1674
TT + LIVYD V+++ +T+ V D G +HAT K+FF YT D+ +RMGN
Sbjct: 180 TTTSNFLIVYDSDVVNFACQETSWVIDSGALIHATPWKDFFTFYTFGDFGSVRMGNDGSV 239
Query: 1675 KVIGIDNIYLRISNNSQLLLPDVSHAPILVEFYFSWET***WLRNSFDGEIRKLSKGS-- 1848
K IG+ G++ + KGS
Sbjct: 240 KAIGM-------------------------------------------GDVSLMMKGSTT 256
Query: 1849 -FIVARGKKYYNLYLMQASISSGSVHVMDCKYSTNL*HKRLNHISEKCLCYLIQIKVISL 2025
F++ G ++A + S+ M+ + L H RL H+SEK L L + ++S
Sbjct: 257 PFVIVSGSS------LEARVIDSSIXAMNDDSTVELXHNRLGHMSEKGLMILAKKNLLSG 310
Query: 2026 VSTTKLEQCAHCLAGKKTQVSFKTNPPSRKLKLLELIHSDVCDPFEVQSLGGVSYLVTFI 2205
+ L+ CAHCLAGK+T+V+FKT+ +RK +L+L++ DV P + ++LGG Y VTFI
Sbjct: 311 MKKGSLKMCAHCLAGKQTRVAFKTHXHTRKPGMLDLVYYDVYGPMKTKTLGGXLYFVTFI 370
Query: 2206 DDHSRKL*IYPLKTKDQALEKFKQFQASFEREIENKIKCIRVDNG 2340
DDHSRK+ + LKTKDQ LE FK F A ER+ K+KCIR DNG
Sbjct: 371 DDHSRKIWVXTLKTKDQVLEVFKXFHALAERQXGEKLKCIRTDNG 415
Score = 119 bits (298), Expect(5) = e-105
Identities = 75/170 (44%), Positives = 98/170 (57%), Gaps = 6/170 (3%)
Frame = +3
Query: 2346 YCGPFD*YCKQQGIRHQKTP*----LNGLAERMNRTIVKRVQCLLLEAEFLSPF-GVKL* 2510
Y GPFD YC+Q GIR+QKTP LNGLAERMNRT+V+RV+CLL +++ F G L
Sbjct: 418 YSGPFDEYCRQHGIRNQKTPPKTPQLNGLAERMNRTLVERVRCLLSQSQLPRXFXGEVLN 477
Query: 2511 IQLFMSSIYLLLFLCMEILQRSF-G*EASYDYLRGFGCKVYIHVPKDEKSKLDSKTRQCV 2687
+ + ++ +FL ++L R + E YD+LR FGCK ++H+PKDE
Sbjct: 478 XVVHVLNLAPCVFLKFDVLDRIWLDNEIFYDHLRVFGCKAFVHIPKDE------------ 525
Query: 2688 FLGYGQDEFRYRLYDPVVKKLVRSRDVIFFEDQIIDDFEKV*KAGSESQY 2837
R YDPV KKLVRS+D +F ED I D EK +E QY
Sbjct: 526 -----------RFYDPVQKKLVRSQDAMFMEDHSIWDIEKT--DATEFQY 562
Score = 94.0 bits (232), Expect(5) = e-105
Identities = 44/75 (58%), Positives = 59/75 (78%)
Frame = +3
Query: 3288 SQRRCVEFSKIFSPVEKMSSIRIVLVLAISPNIKIEQMDVKTTFFHGDLEEEIYTEQSEG 3467
SQ++C++F +IFSPV KMS IR+VL A S +++I QMDVKT F HGDL++EIY EQ EG
Sbjct: 663 SQKKCIDFDEIFSPVIKMSXIRVVLGFAASLDLEIXQMDVKTAFLHGDLDKEIYMEQPEG 722
Query: 3468 FQVKGKEDYVCRLKK 3512
F +K K+DYV + K+
Sbjct: 723 FTIKEKKDYVYKEKE 737
Score = 44.7 bits (104), Expect(5) = e-105
Identities = 24/68 (35%), Positives = 36/68 (52%)
Frame = +2
Query: 1280 RVTENRGRTKEKSQEGXXXXXXXXXXXYKDVE*HYCGKKGYIKRNCFKWKREKKNGSNSE 1459
RV++NR RTK K+ + + +VE HYC KG+I++ C + KR K G +
Sbjct: 119 RVSKNRDRTKNKTIK------------FANVECHYCHLKGHIRKYCRQLKRGMKQGKVKD 166
Query: 1460 TKKDGGSD 1483
K D G +
Sbjct: 167 KKNDNGGE 174
Score = 42.7 bits (99), Expect(5) = e-105
Identities = 33/104 (31%), Positives = 51/104 (49%), Gaps = 19/104 (18%)
Frame = +1
Query: 2938 NDDVTDMQP------PTTVDLPKE----------PDEALFRRSTRVRQPSTRYAPNEFVL 3069
+D++ D+ P PT V++ + P + RRSTR R PST Y+ +++
Sbjct: 563 SDNLIDLNPVPLTHLPTQVEMDDDVHEQSLVAEAPLDIPLRRSTRDRHPSTXYSIDDY-- 620
Query: 3070 LAGGGEPECYEDAIESEQKC---NAMDDEMKSLFENHIFDLVRV 3192
+A+ E K +AM DEMKSL EN F+LV++
Sbjct: 621 -----------EAMXDENKMKWVDAMQDEMKSLHENXSFELVKL 653
>emb|CAN61851.1| hypothetical protein VITISV_036278 [Vitis vinifera]
Length = 973
Score = 162 bits (410), Expect(5) = e-105
Identities = 100/282 (35%), Positives = 141/282 (50%)
Frame = +1
Query: 1495 TTLEDLLIVYDERVIHYTSHDTN*VADIGVALHATAKKEFFPSYTPSDYRILRMGNISMS 1674
TT D LI+YD V+++ +TN V D G ++HAT +K FF SYT D+ +RMGN ++
Sbjct: 203 TTTSDFLIIYDSDVVNFARQETNWVIDSGASIHATPRKNFFTSYTFGDFGSVRMGNDGLA 262
Query: 1675 KVIGIDNIYLRISNNSQLLLPDVSHAPILVEFYFSWET***WLRNSFDGEIRKLSKGSFI 1854
K IG+ ++ L SN L+L +V H P D + +S GS +
Sbjct: 263 KAIGMGDVRLETSNGIVLILKNVKHIP--------------------DIHMNLISTGSMV 302
Query: 1855 VARGKKYYNLYLMQASISSGSVHVMDCKYSTNL*HKRLNHISEKCLCYLIQIKVISLVST 2034
VA+GKK +LYLMQA S
Sbjct: 303 VAKGKKCSSLYLMQARKGS----------------------------------------- 321
Query: 2035 TKLEQCAHCLAGKKTQVSFKTNPPSRKLKLLELIHSDVCDPFEVQSLGGVSYLVTFIDDH 2214
L++C H LA K+T+V+FKT+ ++K +L+L++ DVC P + + GG Y TFIDD+
Sbjct: 322 --LKRCDHYLARKQTRVAFKTHRHTKKPGMLDLVYYDVCGPMKTKKFGGSLYFFTFIDDY 379
Query: 2215 SRKL*IYPLKTKDQALEKFKQFQASFEREIENKIKCIRVDNG 2340
SRK+ +Y LKTKDQ L ER+ K+KCIR NG
Sbjct: 380 SRKIWVYTLKTKDQVL----------ERQSGEKLKCIRTYNG 411
Score = 142 bits (357), Expect(5) = e-105
Identities = 83/168 (49%), Positives = 102/168 (60%), Gaps = 4/168 (2%)
Frame = +3
Query: 2346 YCGPFD*YCKQQGIRHQKT----P*LNGLAERMNRTIVKRVQCLLLEAEFLSPFGVKL*I 2513
Y GPFD YC+Q GIRHQKT P LN LAERMNRT+V+RV+CLL ++ F +
Sbjct: 414 YSGPFDEYCRQHGIRHQKTHPKTPQLNVLAERMNRTLVERVRCLLSQSRLPRSFWGEA-- 471
Query: 2514 QLFMSSIYLLLFLCMEILQRSFG*EASYDYLRGFGCKVYIHVPKDEKSKLDSKTRQCVFL 2693
L + +L + E YD+L FG K ++H+PK E+SKLD+KTR CVF+
Sbjct: 472 ----------LNTVVHVLNLTPYNEIFYDHLCVFGRKAFVHIPKYERSKLDAKTRPCVFI 521
Query: 2694 GYGQDEFRYRLYDPVVKKLVRSRDVIFFEDQIIDDFEKV*KAGSESQY 2837
G GQDE YR YD V KKLVR RD +F E I DFEK +E QY
Sbjct: 522 GNGQDELGYRFYDLVQKKLVRIRDAMFMEYHTIQDFEKT--NATEFQY 567
Score = 71.6 bits (174), Expect(5) = e-105
Identities = 41/94 (43%), Positives = 57/94 (60%), Gaps = 3/94 (3%)
Frame = +1
Query: 2920 DDIGTPNDDVTDMQPPTTVDLPKEPDEALFRRSTRVRQPSTRYAPNEFVLLAGGGEPECY 3099
D+ D+ D++ PT V + + RSTR R PST Y+ +++VLL GEPE Y
Sbjct: 570 DEAHDDQHDIGDVEIPTHVGMDDD-------RSTRDRHPSTWYSVDDYVLLTNRGEPESY 622
Query: 3100 EDAIESEQK---CNAMDDEMKSLFENHIFDLVRV 3192
E+A+ E K +AM DEMKSL ENH F+LV++
Sbjct: 623 EEAMGVENKMKWVDAMQDEMKSLHENHSFELVKL 656
Score = 60.5 bits (145), Expect(5) = e-105
Identities = 30/51 (58%), Positives = 39/51 (76%)
Frame = +3
Query: 3186 EGKTALKNR*VYRLKHEEHSSHPQYKYILVV*GFSQRRCVEFSKIFSPVEK 3338
+GK ALKNR VYR+K EEH+S P+YK LVV FSQ++ ++F +IFS V K
Sbjct: 658 KGKKALKNRWVYRVKQEEHTSQPRYKARLVVKWFSQKKSIDFDEIFSLVVK 708
Score = 40.4 bits (93), Expect(5) = e-105
Identities = 17/34 (50%), Positives = 22/34 (64%)
Frame = +2
Query: 3440 RNLYGTIRGISSERKRRLCLQIEENLLWFETSTK 3541
RNLYG G ++RKR LC+ +EE LW E T+
Sbjct: 715 RNLYGIAIGFHNKRKRGLCVYVEEKSLWLEAGTE 748
Score = 61.6 bits (148), Expect = 3e-06
Identities = 29/52 (55%), Positives = 39/52 (75%)
Frame = +3
Query: 3723 LNKSFVIKDLGPAK*IFGVKISRDRKAMKLWLSQENYIQKVLQRFRMDKSKV 3878
L+KSF +K LGP K I ++I RDR + KL++SQ+ YI+KVL+RF M K KV
Sbjct: 751 LSKSFSMKXLGPTKKILDIRIERDRASKKLYMSQKQYIEKVLERFNMSKXKV 802
>emb|CAN74160.1| hypothetical protein VITISV_018405 [Vitis vinifera]
Length = 1302
Score = 234 bits (597), Expect(3) = e-103
Identities = 124/283 (43%), Positives = 177/283 (62%), Gaps = 1/283 (0%)
Frame = +1
Query: 1495 TTLEDLLIVYDERVIHYTSHDTN*VADIGVALHATAKKEFFPSYTPSDYRILRMGNISMS 1674
TT D LIVYD V+++ +T+ V D G ++HAT +K+FF SYT D+ +RMGN +
Sbjct: 135 TTTSDFLIVYDSDVVNFACQETSWVIDSGASIHATPRKDFFTSYTSGDFGSVRMGNDGSA 194
Query: 1675 KVIGIDNIYLRISNNSQLLLPDVSHAP-ILVEFYFSWET***WLRNSFDGEIRKLSKGSF 1851
K IG+ ++ L SN + L L +V H P I + + + N+F KL++GS
Sbjct: 195 KAIGMGDVRLETSNGTMLTLKNVKHIPDIRMNLISTGKLDDEGFXNTFRDSQWKLTRGSM 254
Query: 1852 IVARGKKYYNLYLMQASISSGSVHVMDCKYSTNL*HKRLNHISEKCLCYLIQIKVISLVS 2031
+A+G K +LYLMQA + S++ +D + L H RL H+SEK L L + ++S +
Sbjct: 255 XIAKGNKSSSLYLMQARVIDSSINAVDDDSTFELWHNRLGHMSEKGLMILAKKNLLSXMK 314
Query: 2032 TTKLEQCAHCLAGKKTQVSFKTNPPSRKLKLLELIHSDVCDPFEVQSLGGVSYLVTFIDD 2211
L++CAHCLAGK T+V+FKT +RK +L+L++ DVC P + ++L G Y VTFIDD
Sbjct: 315 KGSLKRCAHCLAGKXTRVAFKTLHHTRKPGMLDLVYFDVCGPMKTKTLXGSLYFVTFIDD 374
Query: 2212 HSRKL*IYPLKTKDQALEKFKQFQASFEREIENKIKCIRVDNG 2340
HSRK+ +Y LK KDQ L+ FKQF A ER+ K+KCIR DNG
Sbjct: 375 HSRKIWVYTLKXKDQVLDVFKQFHALVERQSGEKLKCIRTDNG 417
Score = 147 bits (372), Expect(3) = e-103
Identities = 84/173 (48%), Positives = 110/173 (63%), Gaps = 6/173 (3%)
Frame = +3
Query: 2346 YCGPFD*YCKQQGIRHQKTP*----LNGLAERMNRTIVKRVQCLLLEAEFLSPF-GVKL* 2510
Y GPFD YC+Q GIRHQKTP LNGLAERMNRT+V+RV+CLL +++ F G L
Sbjct: 420 YSGPFDEYCRQHGIRHQKTPPKTPQLNGLAERMNRTLVERVRCLLSQSQLPRSFWGEALN 479
Query: 2511 IQLFMSSIYLLLFLCMEILQRSFG*-EASYDYLRGFGCKVYIHVPKDEKSKLDSKTRQCV 2687
+ + ++ + L ++ R + E SYD+LR FGCK ++H+PKDE+SKLD+KTR CV
Sbjct: 480 TVVHVLNLTPCVPLEFDVPDRIWSNNEISYDHLRVFGCKAFVHIPKDERSKLDAKTRPCV 539
Query: 2688 FLGYGQDEFRYRLYDPVVKKLVRSRDVIFFEDQIIDDFEKV*KAGSESQYDTH 2846
F+GYGQDE YR YD V KKLV D + + D E + E+ D H
Sbjct: 540 FIGYGQDELGYRFYDSVQKKLV--EDEAHDDQHDMGDVETPTQVEDEAHDDQH 590
Score = 45.1 bits (105), Expect(3) = e-103
Identities = 27/77 (35%), Positives = 39/77 (50%)
Frame = +2
Query: 1253 KSDLSSH*IRVTENRGRTKEKSQEGXXXXXXXXXXXYKDVE*HYCGKKGYIKRNCFKWKR 1432
++ LS+ VTE RG +K + + +VE HYC KG+IK+ C + KR
Sbjct: 54 RTSLSNSXPDVTEKRGXSKSRGPKNRDRSKSKTNKX-ANVECHYCHLKGHIKKYCRQLKR 112
Query: 1433 EKKNGSNSETKKDGGSD 1483
+ K G E K D G +
Sbjct: 113 DMKQGKVKEKKNDNGGE 129
Score = 156 bits (395), Expect(2) = 2e-56
Identities = 94/221 (42%), Positives = 121/221 (54%)
Frame = +3
Query: 3216 VYRLKHEEHSSHPQYKYILVV*GFSQRRCVEFSKIFSPVEKMSSIRIVLVLAISPNIKIE 3395
VY++K EEH+S P+YK LVV GF+Q++ S +++I+
Sbjct: 687 VYKVKQEEHTSQPRYKARLVVKGFNQKKS------------------------SLDLEIQ 722
Query: 3396 QMDVKTTFFHGDLEEEIYTEQSEGFQVKGKEDYVCRLKKICYGLKQALR*WYKKFRSVMS 3575
+MDVKT F HGDL+ EIY EQ EGF +KGKEDY
Sbjct: 723 RMDVKTAFLHGDLDXEIYMEQLEGFVLKGKEDY--------------------------- 755
Query: 3576 KQGYRKTTSDHCVFVQKFSVDAFIILSLYVVDMLIVGKNIEMIDRLKQELNKSFVIKDLG 3755
KFS D F+IL LYV D+LIV +N+ ID LK++L+KSF +KDLG
Sbjct: 756 ----------------KFSDDDFVILLLYVDDILIVXRNVSRIDNLKKQLSKSFAMKDLG 799
Query: 3756 PAK*IFGVKISRDRKAMKLWLSQENYIQKVLQRFRMDKSKV 3878
PAK I G+KI RDR + KL + QE YI+KVL RF M K+KV
Sbjct: 800 PAKRILGIKIERDRASKKLCMLQEQYIEKVLARFNMSKAKV 840
Score = 93.6 bits (231), Expect(2) = 2e-56
Identities = 53/115 (46%), Positives = 69/115 (60%), Gaps = 7/115 (6%)
Frame = +1
Query: 2866 VEGGTQTESDPQTNEHDMDDIGTPN----DDVTDMQPPTTVDLPKEPDEALFRRSTRVRQ 3033
VE TQ E + ++HDM D+ TP DD Q PT + P R+STR R
Sbjct: 575 VETPTQVEDEAHDDQHDMGDVETPTQVEVDDDVHEQSPTV----EAPSNIPLRKSTRDRH 630
Query: 3034 PSTRYAPNEFVLLAGGGEPECYEDAIESEQK---CNAMDDEMKSLFENHIFDLVR 3189
PSTRY+ +++VLL GGEPE Y +A+E E K +AM DEM+SL ENH F+LV+
Sbjct: 631 PSTRYSVDDYVLLTDGGEPESYVEAMEDENKMKWVDAMQDEMESLHENHSFELVK 685
Score = 80.5 bits (197), Expect(2) = 5e-25
Identities = 39/73 (53%), Positives = 54/73 (73%)
Frame = +2
Query: 3875 SWDVVSWQSLLHGFVALSITKAEFIAATEACKELVWIRKPLKELRYSQGKYVLHCDSLSA 4054
S VVSWQS L VALS +A++IAA EACKEL+W++ ++EL + Q +YV++CD+ SA
Sbjct: 935 SGGVVSWQSRLKKCVALSTIEAKYIAAAEACKELLWMKCFMQELGFKQQRYVVYCDNQSA 994
Query: 4055 IHLGKNPTFHFKS 4093
IHL KN T+ +S
Sbjct: 995 IHLSKNSTYQARS 1007
Score = 64.7 bits (156), Expect(2) = 5e-25
Identities = 32/53 (60%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Frame = +1
Query: 4096 HIDVRYHWIHDVLN-KLADFEKFHTDNNGVDMLTKVLPRWKFEVCRSLA*MAS 4251
HIDVRYHW+ D LN + EK HTDNNG DMLTK LP K VC +A M S
Sbjct: 1009 HIDVRYHWMRDALNDNFFEIEKIHTDNNGSDMLTKTLPMEKLGVCCFIAGMIS 1061
Score = 73.6 bits (179), Expect = 9e-10
Identities = 38/120 (31%), Positives = 69/120 (57%), Gaps = 10/120 (8%)
Frame = +3
Query: 1008 IITLRYKEGTTVMDYVNKF*GFVDQLSNVGVVFEDEILGLWLLNTLSSSWETFPVSYTNT 1187
+++L+Y++ T + D++N F G ++QL+ + + FE+E+ GLWLL TL SWETF S +N+
Sbjct: 1 MMSLKYQDVTPMTDHLNTFQGIINQLAGINIKFEEEVQGLWLLGTLPDSWETFRTSLSNS 60
Query: 1188 AALVVMCLEYTKAGIP----------NEKVRIKVIYLHIR*GLLKIGGELKRKVKRAEIK 1337
V +K+ P N+ ++ Y H++ + K +LKR +K+ ++K
Sbjct: 61 XPDVTEKRGXSKSRGPKNRDRSKSKTNKXANVECHYCHLKGHIKKYCRQLKRDMKQGKVK 120
>emb|CAN59934.1| hypothetical protein VITISV_001876 [Vitis vinifera]
Length = 1392
Score = 160 bits (406), Expect(5) = e-102
Identities = 103/283 (36%), Positives = 146/283 (51%), Gaps = 1/283 (0%)
Frame = +1
Query: 1495 TTLEDLLIVYDERVIHYTSHDTN*VADIGVALHATAKKEFFPSYTPSDYRILRMGNISMS 1674
TT D LIVYD V+++ +T+ V D G ++HAT +K+FF SYT D+ +RMGN +
Sbjct: 138 TTTSDFLIVYDSDVVNFACQETSWVIDSGASIHATPRKDFFTSYTSGDFGSVRMGNDGSA 197
Query: 1675 KVIGIDNIYLRISNNSQLLLPDVSHAP-ILVEFYFSWET***WLRNSFDGEIRKLSKGSF 1851
K IG+ ++ L SN + L L +V H P I + + N+F KL++GS
Sbjct: 198 KAIGMGDVCLETSNGTMLTLKNVKHIPDIRMNLISIGKLDDEGFCNTFRDSQWKLTRGS- 256
Query: 1852 IVARGKKYYNLYLMQASISSGSVHVMDCKYSTNL*HKRLNHISEKCLCYLIQIKVISLVS 2031
A + S++V+D + L H RL H+SEK L L + ++S +
Sbjct: 257 --------------MARVIDSSINVVDDDSTFELWHNRLGHMSEKGLMILAKKNLLSGMK 302
Query: 2032 TTKLEQCAHCLAGKKTQVSFKTNPPSRKLKLLELIHSDVCDPFEVQSLGGVSYLVTFIDD 2211
L++CAHCLAGK+T+V+FKT +RK D
Sbjct: 303 KGSLKRCAHCLAGKQTRVAFKTLHHTRK-----------------------------PGD 333
Query: 2212 HSRKL*IYPLKTKDQALEKFKQFQASFEREIENKIKCIRVDNG 2340
HSRK+ +Y LKTK Q L+ FKQF A ER+ K+KCIR DNG
Sbjct: 334 HSRKIWVYTLKTKYQVLDVFKQFHALVERQSGEKLKCIRTDNG 376
Score = 128 bits (322), Expect(5) = e-102
Identities = 76/160 (47%), Positives = 97/160 (60%), Gaps = 6/160 (3%)
Frame = +3
Query: 2346 YCGPFD*YCKQQGIRHQKTP*----LNGLAERMNRTIVKRVQCLLLEAEFLSPF-GVKL* 2510
Y GPFD YCKQ GIRHQKTP LNGLAERMN T+V+RV+CLL +++ F G L
Sbjct: 379 YSGPFDEYCKQHGIRHQKTPPKTPQLNGLAERMNMTLVERVRCLLSQSQLPRSFWGEALN 438
Query: 2511 IQLFMSSIYLLLFLCMEILQRSFG*-EASYDYLRGFGCKVYIHVPKDEKSKLDSKTRQCV 2687
+ + ++ + L ++ R + E SYD+LR FGCK ++H+PKDE+SKLD+KTR
Sbjct: 439 TVVHVLNLTPCVLLEFDVPDRIWSNNEISYDHLRVFGCKAFVHIPKDERSKLDAKTRP-- 496
Query: 2688 FLGYGQDEFRYRLYDPVVKKLVRSRDVIFFEDQIIDDFEK 2807
KKLVRSRDV+F ED I D EK
Sbjct: 497 -----------------YKKLVRSRDVVFMEDHTIQDIEK 519
Score = 84.3 bits (207), Expect(5) = e-102
Identities = 48/113 (42%), Positives = 68/113 (60%), Gaps = 8/113 (7%)
Frame = +1
Query: 2878 TQTESDPQTNEHDMDDIGTP-----NDDVTDMQPPTTVDLPKEPDEALFRRSTRVRQPST 3042
TQ E + +++DM D+ TP +DDV + P + P + RRS R R PST
Sbjct: 544 TQVEDEAHDDQNDMGDVETPTQVEVDDDVHEQSPAI-----EAPSDIPLRRSIRDRHPST 598
Query: 3043 RYAPNEFVLLAGGGEPECYEDAIESEQK---CNAMDDEMKSLFENHIFDLVRV 3192
RY+ +++VLL GGE E Y +A+E E K +AM DEM+SL ENH F+LV++
Sbjct: 599 RYSVDDYVLLTDGGELESYVEAMEDENKMKWVDAMQDEMESLHENHSFELVKL 651
Score = 50.8 bits (120), Expect(5) = e-102
Identities = 24/55 (43%), Positives = 35/55 (63%)
Frame = +3
Query: 1092 VGVVFEDEILGLWLLNTLSSSWETFPVSYTNTAALVVMCLEYTKAGIPNEKVRIK 1256
+ + FE+E+ GLWLL TL SWETF S N A +M ++ K+ + NE++R K
Sbjct: 1 MNIKFEEEVQGLWLLGTLPDSWETFRTSLFNLALDGIMNMDLVKSCVLNEEMRRK 55
Score = 41.2 bits (95), Expect(5) = e-102
Identities = 23/69 (33%), Positives = 34/69 (49%)
Frame = +2
Query: 1277 IRVTENRGRTKEKSQEGXXXXXXXXXXXYKDVE*HYCGKKGYIKRNCFKWKREKKNGSNS 1456
+ VTE RGR+K + + + +VE HYC KG+IK+ + KR+ K
Sbjct: 65 VLVTEKRGRSKSRGPKNRDRSKRKTNK-FANVECHYCHLKGHIKKYYRQLKRDMKQEKVK 123
Query: 1457 ETKKDGGSD 1483
E K D G +
Sbjct: 124 EKKNDNGGE 132
Score = 163 bits (413), Expect = 6e-37
Identities = 82/125 (65%), Positives = 97/125 (77%)
Frame = +3
Query: 3504 LKKICYGLKQALR*WYKKFRSVMSKQGYRKTTSDHCVFVQKFSVDAFIILSLYVVDMLIV 3683
LK YGLKQA R WYKKF SVM +QGYRKTTSDHCVFVQKFS D F+IL LYV D+LIV
Sbjct: 658 LKNSLYGLKQAPRQWYKKFESVMGEQGYRKTTSDHCVFVQKFSDDDFVILLLYVDDILIV 717
Query: 3684 GKNIEMIDRLKQELNKSFVIKDLGPAK*IFGVKISRDRKAMKLWLSQENYIQKVLQRFRM 3863
G+N+ ID LK++L+KSF +KDLG K I G++I RDR + KL + QE YI+KVL RF M
Sbjct: 718 GRNVSRIDNLKKQLSKSFAMKDLGLVKRILGIRIERDRASKKLCMLQEQYIEKVLARFSM 777
Query: 3864 DKSKV 3878
K+KV
Sbjct: 778 SKAKV 782
Score = 66.6 bits (161), Expect(2) = 2e-12
Identities = 33/51 (64%), Positives = 36/51 (70%), Gaps = 1/51 (1%)
Frame = +1
Query: 4096 HIDVRYHWIHDVLN-KLADFEKFHTDNNGVDMLTKVLPRWKFEVCRSLA*M 4245
HIDVRYHW+ D LN L + EK TDNNG DMLTK LPR K VC S+A M
Sbjct: 946 HIDVRYHWMRDALNDNLFEIEKIRTDNNGSDMLTKTLPREKLGVCCSIARM 996
Score = 36.2 bits (82), Expect(2) = 2e-12
Identities = 13/28 (46%), Positives = 21/28 (75%)
Frame = +2
Query: 4010 YSQGKYVLHCDSLSAIHLGKNPTFHFKS 4093
+ Q +YV++C++ SAIHL N T+H +S
Sbjct: 917 FKQQRYVVYCENQSAIHLSNNSTYHVRS 944
>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1241
Score = 196 bits (499), Expect(4) = e-102
Identities = 107/212 (50%), Positives = 144/212 (67%)
Frame = +3
Query: 3243 SSHPQYKYILVV*GFSQRRCVEFSKIFSPVEKMSSIRIVLVLAISPNIKIEQMDVKTTFF 3422
S +YK LV G+SQ ++F+ +FSPV K SSIR +L + + ++EQMDVKT F
Sbjct: 784 SDEARYKARLVAKGYSQIPGIDFNDVFSPVVKHSSIRTLLSIVAMHDYELEQMDVKTAFL 843
Query: 3423 HGDLEEEIYTEQSEGFQVKGKEDYVCRLKKICYGLKQALR*WYKKFRSVMSKQGYRKTTS 3602
HG+LEE+IY EQ EGF V GKE+ VCRLKK YGLKQ+ R WYK+F S M Q +R++
Sbjct: 844 HGELEEDIYMEQPEGFVVPGKENLVCRLKKSLYGLKQSPRQWYKRFDSFMLSQKFRRSNY 903
Query: 3603 DHCVFVQKFSVDAFIILSLYVVDMLIVGKNIEMIDRLKQELNKSFVIKDLGPAK*IFGVK 3782
D CV+++ A I L LYV DMLI K+ I +LK +L+ F +KDLG AK I G++
Sbjct: 904 DSCVYLKVVDGSA-IYLLLYVDDMLIAAKDKSEIAKLKAQLSSEFEMKDLGAAKKILGME 962
Query: 3783 ISRDRKAMKLWLSQENYIQKVLQRFRMDKSKV 3878
I+R+R + KL+LSQ+ YI+KVL RF M +K+
Sbjct: 963 ITRERHSGKLYLSQKCYIEKVLHRFNMHDAKL 994
Score = 127 bits (318), Expect(4) = e-102
Identities = 88/271 (32%), Positives = 139/271 (51%), Gaps = 10/271 (3%)
Frame = +1
Query: 1567 VADIGVALHATAKKEFFPSYTPSDYRILRMGNISMSKVIGIDNIYLRISNNSQLLLPDVS 1746
+ D H +++F +Y + MG+ + +V GI + +++ + L DV
Sbjct: 210 ILDTACTYHMCPNRDWFATYEAVQGGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLLDVR 269
Query: 1747 HAPILVEFYFSWET***WLRNSF-----DGEIRKLSKGSFIVARGK-KYYNLYLMQASIS 1908
H P L S T R + DG I K++KGS +V + KY NLY ++ +
Sbjct: 270 HIPNLKRSLISLCT---LDRKGYKYSGGDG-ILKVTKGSLVVMKADIKYANLYHLRGTTI 325
Query: 1909 SGSVHVMDCKYS----TNL*HKRLNHISEKCLCYLIQIKVISLVSTTKLEQCAHCLAGKK 2076
G+V + S TNL H RL H+SE L L + ++ S KL+ C HC+ GK
Sbjct: 326 LGNVAAVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRGLLDGQSIGKLKFCEHCIFGKH 385
Query: 2077 TQVSFKTNPPSRKLKLLELIHSDVCDPFEVQSLGGVSYLVTFIDDHSRKL*IYPLKTKDQ 2256
+V F T+ + + +L+ +HSD+ P S GG Y++T +DD+SRK+ Y LK K Q
Sbjct: 386 KRVKFNTSTHTTE-GILDYVHSDLWGPARKTSFGGARYMMTIVDDYSRKVWPYFLKHKYQ 444
Query: 2257 ALEKFKQFQASFEREIENKIKCIRVDNGCSI 2349
A + FK+++ ER+ E K+K +R DNG +
Sbjct: 445 AFDVFKEWKTMVERQTERKVKILRTDNGMEL 475
Score = 83.2 bits (204), Expect(4) = e-102
Identities = 56/157 (35%), Positives = 81/157 (51%), Gaps = 10/157 (6%)
Frame = +3
Query: 2358 FD*YCKQQGI-RHQK---TP*LNGLAERMNRTIVKRVQCLLLEAEFLSPFGVKL*IQLFM 2525
F YCK +GI RH TP NG+AERMNRTI+ + +C+L A F +
Sbjct: 480 FKSYCKSEGIVRHYTVPHTPQQNGVAERMNRTIISKARCMLSNASLPKQFWA----EAVS 535
Query: 2526 SSIYLLLFLCMEILQRSF------G*EASYDYLRGFGCKVYIHVPKDEKSKLDSKTRQCV 2687
++ YL+ + + G A+Y LR FGC Y HV + KL+ + +C+
Sbjct: 536 TACYLINRSPSYAIDKKTPIEVWSGSPANYSDLRVFGCTAYAHV---DNGKLEPRVIKCI 592
Query: 2688 FLGYGQDEFRYRLYDPVVKKLVRSRDVIFFEDQIIDD 2798
FLGY Y+L+ P KK+V SR+V+F E ++ D
Sbjct: 593 FLGYLSGVKGYKLWCPETKKVVISRNVVFHESIMLHD 629
Score = 37.4 bits (85), Expect(4) = e-102
Identities = 33/123 (26%), Positives = 52/123 (42%), Gaps = 9/123 (7%)
Frame = +1
Query: 2851 RVPNTVEGGTQTESDPQTNEHDMDDIGTPNDDVTDMQPPTTV--DLPK---EPDEALFRR 3015
+V + + G E + D I + + P ++ D PK +P
Sbjct: 646 QVEHLISSGHAPEKEDVAINQDAPVIEDSDSSIVQQSPKRSIAKDRPKRNTKPPRRYIEE 705
Query: 3016 STRVRQPSTRYAPNEFVLLAGGGEPECYEDAIESEQKCN----AMDDEMKSLFENHIFDL 3183
+ V YA + + G EP Y DAI S+ CN AM DEM+SL +NH ++L
Sbjct: 706 ANIVA-----YALSVAEEIEGNAEPSTYSDAIVSDD-CNRWITAMHDEMESLEKNHSWEL 759
Query: 3184 VRV 3192
++
Sbjct: 760 EKL 762
Score = 59.3 bits (142), Expect(2) = 6e-13
Identities = 31/66 (46%), Positives = 42/66 (63%)
Frame = +2
Query: 3887 VSWQSLLHGFVALSITKAEFIAATEACKELVWIRKPLKELRYSQGKYVLHCDSLSAIHLG 4066
VSW++ L VALS T+AE++A +EACKE++W+R EL + CDS SAI L
Sbjct: 1119 VSWKASLQATVALSTTEAEYMAISEACKEVIWLRGLYTELCGVTSCINIFCDSQSAICLT 1178
Query: 4067 KNPTFH 4084
K+ FH
Sbjct: 1179 KDQMFH 1184
Score = 45.1 bits (105), Expect(2) = 6e-13
Identities = 24/49 (48%), Positives = 33/49 (67%), Gaps = 2/49 (4%)
Frame = +1
Query: 4096 HIDVRYHWIHDVLNKLADFE--KFHTDNNGVDMLTKVLPRWKFEVCRSL 4236
HID+RYH+I V+ + D + K T +N VDM+TK +P KFE+C SL
Sbjct: 1189 HIDLRYHFIRGVIAE-GDVKVCKISTHDNPVDMMTKPVPATKFELCSSL 1236
>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group] gi|77548751|gb|ABA91548.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 2340
Score = 196 bits (497), Expect(4) = e-101
Identities = 105/211 (49%), Positives = 143/211 (67%)
Frame = +3
Query: 3243 SSHPQYKYILVV*GFSQRRCVEFSKIFSPVEKMSSIRIVLVLAISPNIKIEQMDVKTTFF 3422
S +YK L+ G+SQ ++F+ +FSPV K SSIR +L + + ++EQMDVKT F
Sbjct: 1082 SDEARYKARLIAKGYSQIPGIDFNDVFSPVVKHSSIRTLLSIVAMHDYELEQMDVKTAFL 1141
Query: 3423 HGDLEEEIYTEQSEGFQVKGKEDYVCRLKKICYGLKQALR*WYKKFRSVMSKQGYRKTTS 3602
HG+LEE+IY EQ +GF V GKE+ VCRLKK YGLKQ+ R WYK+F S M Q +R++
Sbjct: 1142 HGELEEDIYMEQPKGFVVPGKENLVCRLKKSLYGLKQSPRQWYKRFDSFMLSQKFRRSNY 1201
Query: 3603 DHCVFVQKFSVDAFIILSLYVVDMLIVGKNIEMIDRLKQELNKSFVIKDLGPAK*IFGVK 3782
D CV+++ A I L LYV DMLI K+ I +LK +L+ F +KDLG AK I G++
Sbjct: 1202 DSCVYLKVVDGSA-IYLLLYVDDMLIAAKDKSEIAKLKAQLSSEFEMKDLGAAKKILGME 1260
Query: 3783 ISRDRKAMKLWLSQENYIQKVLQRFRMDKSK 3875
I+R R + KL+LSQ+ YI+KVL+RF M +K
Sbjct: 1261 ITRKRHSFKLYLSQKGYIEKVLRRFNMHDAK 1291
Score = 121 bits (304), Expect(4) = e-101
Identities = 85/260 (32%), Positives = 135/260 (51%), Gaps = 10/260 (3%)
Frame = +1
Query: 1591 HATAKKEFFPSYTPSDYRILRMGNISMSKVIGIDNIYLRISNNSQLLLPDVSHAPILVEF 1770
H +++F +Y + MG+ + +V GI + +++ + L DV H P L
Sbjct: 516 HMCPNRDWFATYEAVQVGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLSDVRHIPNLKRS 575
Query: 1771 YFSWET***WLRNSF-----DGEIRKLSKGSFIVARGK-KYYNLYLMQASISSGSVHVMD 1932
S T R + DG I K++KGS +V + K NLY ++ + G+V +
Sbjct: 576 LISLCT---LDRKGYKYSGGDG-ILKVTKGSLVVMKADIKSANLYHLRGTTILGNVAAVS 631
Query: 1933 CKYS----TNL*HKRLNHISEKCLCYLIQIKVISLVSTTKLEQCAHCLAGKKTQVSFKTN 2100
S TNL H RL H++E L L + ++ S KL+ C HC+ GK +V F T+
Sbjct: 632 DSLSNSDATNLWHMRLGHMTEIGLAELSKRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTS 691
Query: 2101 PPSRKLKLLELIHSDVCDPFEVQSLGGVSYLVTFIDDHSRKL*IYPLKTKDQALEKFKQF 2280
+ + +L+ +HSD+ P S GG Y++T +DD+SRK+ Y LK K QA + FK++
Sbjct: 692 THTTE-GILDYVHSDLWGPARKTSFGGTRYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEW 750
Query: 2281 QASFEREIENKIKCIRVDNG 2340
+ ER+ E K+K +R DNG
Sbjct: 751 KTMVERQTERKVKILRTDNG 770
Score = 84.3 bits (207), Expect(4) = e-101
Identities = 57/157 (36%), Positives = 81/157 (51%), Gaps = 10/157 (6%)
Frame = +3
Query: 2358 FD*YCKQQGI-RHQK---TP*LNGLAERMNRTIVKRVQCLLLEAEFLSPFGVKL*IQLFM 2525
F YCK +GI RH TP NG+AERMNRTI+ + +CLL A F +
Sbjct: 778 FKSYCKSEGIVRHYTVPHTPQQNGVAERMNRTIISKARCLLSNAGLPKQFWA----EAVS 833
Query: 2526 SSIYLLLFLCMEILQRSF------G*EASYDYLRGFGCKVYIHVPKDEKSKLDSKTRQCV 2687
++ YL+ + + G A+Y LR FGC Y HV + KL+ + +C+
Sbjct: 834 TACYLINRSPSYAIDKKTPIEVWSGSPANYSDLRVFGCTAYAHV---DNGKLEPRAIKCI 890
Query: 2688 FLGYGQDEFRYRLYDPVVKKLVRSRDVIFFEDQIIDD 2798
FLGY Y+L+ P KK+V SR+V+F E ++ D
Sbjct: 891 FLGYPSGVKGYKLWCPETKKVVISRNVVFHESVMLHD 927
Score = 40.8 bits (94), Expect(4) = e-101
Identities = 34/123 (27%), Positives = 54/123 (43%), Gaps = 9/123 (7%)
Frame = +1
Query: 2851 RVPNTVEGGTQTESDPQTNEHDMDDIGTPNDDVTDMQPPTTV--DLPK---EPDEALFRR 3015
+V + + G E + D I N + P ++ D PK +P +
Sbjct: 944 QVEHLISSGHAPEKEDVAINQDEPVIEDSNSSIVQQSPKRSIAKDRPKRNIKPPQRYIEE 1003
Query: 3016 STRVRQPSTRYAPNEFVLLAGGGEPECYEDAIESEQKCN----AMDDEMKSLFENHIFDL 3183
+ V YA + + G EP Y +AI S+ CN AM DEM+SL +NH ++L
Sbjct: 1004 ANIVA-----YALSVAEEIEGNAEPSTYSEAIVSDD-CNRWITAMHDEMESLEKNHTWEL 1057
Query: 3184 VRV 3192
V++
Sbjct: 1058 VKL 1060
Score = 56.2 bits (134), Expect(2) = 6e-11
Identities = 30/66 (45%), Positives = 40/66 (60%)
Frame = +2
Query: 3887 VSWQSLLHGFVALSITKAEFIAATEACKELVWIRKPLKELRYSQGKYVLHCDSLSAIHLG 4066
VSW++ L VALS T+AE++A +EACKE +W+R L + CDS SAI L
Sbjct: 1417 VSWKASLQATVALSTTEAEYMAISEACKEAIWLRGLYTVLCAVTSCINIFCDSQSAICLT 1476
Query: 4067 KNPTFH 4084
K+ FH
Sbjct: 1477 KDQMFH 1482
Score = 41.2 bits (95), Expect(2) = 6e-11
Identities = 22/49 (44%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
Frame = +1
Query: 4096 HIDVRYHWIHDVLNKLADFE--KFHTDNNGVDMLTKVLPRWKFEVCRSL 4236
HIDVRYH+I ++ + D + K +N DM+TK +P KFE+C SL
Sbjct: 1487 HIDVRYHFIRGLIAE-GDVKICKISIHDNPADMMTKPVPATKFELCSSL 1534
>gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1243
Score = 194 bits (494), Expect(4) = 4e-98
Identities = 106/211 (50%), Positives = 144/211 (68%)
Frame = +3
Query: 3243 SSHPQYKYILVV*GFSQRRCVEFSKIFSPVEKMSSIRIVLVLAISPNIKIEQMDVKTTFF 3422
S +YK LV G+SQ ++F+ +FSPV K SSIR +L + + ++EQM+VKT F
Sbjct: 847 SDEARYKARLVAKGYSQIPGIDFNDVFSPVVKHSSIRTLLGIVAMHDYELEQMNVKTAFL 906
Query: 3423 HGDLEEEIYTEQSEGFQVKGKEDYVCRLKKICYGLKQALR*WYKKFRSVMSKQGYRKTTS 3602
HG+LEE+IY EQ EGF V GKE+ VCRLKK YGLKQ+ R WYK+F S M Q +R +
Sbjct: 907 HGELEEDIYMEQPEGFVVPGKENLVCRLKKSLYGLKQSPRQWYKRFDSFMLSQKFRISNY 966
Query: 3603 DHCVFVQKFSVDAFIILSLYVVDMLIVGKNIEMIDRLKQELNKSFVIKDLGPAK*IFGVK 3782
D CV++ K + I L LYV DMLI K+ I++LK +L+ F +KDLG AK I G++
Sbjct: 967 DSCVYL-KVVDGSVIYLLLYVDDMLIAAKDKSEIEKLKAQLSSEFEMKDLGAAKKILGME 1025
Query: 3783 ISRDRKAMKLWLSQENYIQKVLQRFRMDKSK 3875
I+R+R + KL+LSQ+ YI+KVL+RF M +K
Sbjct: 1026 ITRERHSGKLYLSQKGYIEKVLRRFNMHDAK 1056
Score = 120 bits (300), Expect(4) = 4e-98
Identities = 82/253 (32%), Positives = 131/253 (51%), Gaps = 5/253 (1%)
Frame = +1
Query: 1597 TAKKEFFPSYTPSDYRILRMGNISMSKVIGIDNIYLRISNNSQLLLPDVSHAPILVEFYF 1776
T+ +++F +Y + MG+ + +V GI + +++ + L DV H P L
Sbjct: 296 TSDQDWFATYEALQGGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLSDVQHIPNLKRSLI 355
Query: 1777 SWET***WLRNSFDGEIRKLSKGSFIVARGK-KYYNLYLMQASISSGSVHVMDCKYS--- 1944
S I K++KGS +V + K NLY ++ + G+V + S
Sbjct: 356 SLYG------------ILKVTKGSLVVMKVDIKSANLYHLRGTTILGNVAAVFDSLSNSD 403
Query: 1945 -TNL*HKRLNHISEKCLCYLIQIKVISLVSTTKLEQCAHCLAGKKTQVSFKTNPPSRKLK 2121
TNL H RL H+SE L L + ++ S KL+ C HC+ GK +V F T+ + +
Sbjct: 404 ATNLWHMRLGHMSEIGLAELSKRGLLDGQSIRKLKFCEHCIFGKHKRVKFNTSTHTTE-G 462
Query: 2122 LLELIHSDVCDPFEVQSLGGVSYLVTFIDDHSRKL*IYPLKTKDQALEKFKQFQASFERE 2301
+L+ +HSD+ P S GG Y++T +DD+SRK+ Y LK K QA + FK+++ ER+
Sbjct: 463 ILDYVHSDLWGPAHKTSFGGARYMMTIVDDYSRKVWPYFLKHKYQAFDGFKEWKTMVERQ 522
Query: 2302 IENKIKCIRVDNG 2340
E K+K +R DNG
Sbjct: 523 TERKVKILRTDNG 535
Score = 78.6 bits (192), Expect(4) = 4e-98
Identities = 53/157 (33%), Positives = 77/157 (49%), Gaps = 10/157 (6%)
Frame = +3
Query: 2358 FD*YCKQQGI----RHQKTP*LNGLAERMNRTIVKRVQCLLLEAEFLSPFGVKL*IQLFM 2525
F YCK +GI TP N +AERMNRTI+ + +C+L A F +
Sbjct: 543 FKSYCKSEGIVCHYTAPHTPQQNDVAERMNRTIISKARCMLSNAGLPKQFWA----EAVS 598
Query: 2526 SSIYLLLFLCMEILQRSF------G*EASYDYLRGFGCKVYIHVPKDEKSKLDSKTRQCV 2687
++ YL+ + + G +Y LR FGC Y HV + KL+ + +C+
Sbjct: 599 TACYLINRSPGYAIDKKTPIEVWSGSPTNYSDLRVFGCTAYAHV---DNGKLEPRAIKCI 655
Query: 2688 FLGYGQDEFRYRLYDPVVKKLVRSRDVIFFEDQIIDD 2798
FLGY Y+L+ P KK+V SR+V+F E I+ D
Sbjct: 656 FLGYASGVKGYKLWCPETKKVVISRNVVFHESVILHD 692
Score = 38.5 bits (88), Expect(4) = 4e-98
Identities = 30/118 (25%), Positives = 48/118 (40%), Gaps = 4/118 (3%)
Frame = +1
Query: 2851 RVPNTVEGGTQTESDPQTNEHDMDDIGTPNDDVTDMQPPTTVDLPKEPDEALFRRSTRVR 3030
+V + + G E + D I + + P ++ K R
Sbjct: 709 QVEHLISSGHAPEKEDVAINQDAPVIEDSDSSIVHQSPKRSIAKDKPKRNIKPPRRYIEE 768
Query: 3031 QPSTRYAPNEFVLLAGGGEPECYEDAIESEQKCN----AMDDEMKSLFENHIFDLVRV 3192
YA + + G EP Y +AI S+ CN AM DEM+SL +NH ++LV++
Sbjct: 769 AKIVAYALSVAEKIEGNAEPSTYSEAIVSDD-CNRWITAMHDEMESLEKNHTWELVKL 825