BLASTX nr result
ID: Catharanthus22_contig00002156
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus22_contig00002156
(2036 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana] 118 1e-52
emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulga... 117 2e-52
gb|AAC33226.1| putative non-LTR retroelement reverse transcripta... 123 7e-52
gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transc... 122 2e-51
dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like ... 119 3e-50
dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana] 119 3e-50
emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulga... 106 1e-48
gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcrip... 130 3e-47
dbj|BAB01845.1| non-LTR retroelement reverse transcriptase-like ... 112 7e-45
emb|CAA66812.1| non-ltr retrotransposon reverse transcriptase-li... 112 1e-44
emb|CAB45965.1| putative reverse transcriptase [Arabidopsis thal... 108 1e-44
gb|AAC67331.1| putative non-LTR retroelement reverse transcripta... 126 3e-38
gb|AAF87143.1|AC002423_8 T23E23.16 [Arabidopsis thaliana] 88 6e-38
gb|AAC19278.1| T14P8.10 [Arabidopsis thaliana] gi|7269009|emb|CA... 99 6e-37
ref|XP_006599894.1| PREDICTED: uncharacterized protein LOC102668... 145 1e-36
gb|AAC78274.1| putative reverse transcriptase [Arabidopsis thali... 99 2e-36
ref|XP_006576082.1| PREDICTED: uncharacterized protein LOC102659... 137 7e-34
dbj|BAF00918.1| putative reverse transcriptase [Arabidopsis thal... 88 3e-32
gb|EMJ15226.1| hypothetical protein PRUPE_ppa016677mg [Prunus pe... 88 6e-32
gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana] 122 1e-31
>gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]
Length = 1213
Score = 118 bits (295), Expect(4) = 1e-52
Identities = 59/128 (46%), Positives = 78/128 (60%)
Frame = +2
Query: 269 WNLVGIDFCGAIMEFFSIGMLLKQTNHVIVSLIPKKKHSKSVGDFRPISCCNVFYKVITK 448
W++VG + AI EFFS G LLKQ N + LIPK + DFRPISC N YKVI +
Sbjct: 479 WSIVGAEVTDAIKEFFSSGCLLKQWNATTIVLIPKIVNPTCTSDFRPISCLNTLYKVIAR 538
Query: 449 LLASRLGKVLPTFIDDVEPAFVKGRSMVEDIHLAQDFMRGYTRKRTSPMFTLKIDLWKIY 628
LL RL ++L I + AF+ GRS+ E++ LA D + GY SP LK+DL K +
Sbjct: 539 LLTDRLQRLLSGVISSAQSAFLPGRSLAENVLLATDLVHGYNWSNISPRGMLKVDLKKAF 598
Query: 629 DTMSWEFL 652
D++ WEF+
Sbjct: 599 DSVRWEFV 606
Score = 105 bits (261), Expect(4) = 1e-52
Identities = 68/237 (28%), Positives = 114/237 (48%), Gaps = 30/237 (12%)
Frame = +3
Query: 669 SLKFLEKFIIWMMACVTAPPFSLGVNGEN---------------------------FXGV 767
+L EKFI W+ C++ P F++ +NG N F +
Sbjct: 612 ALAIPEKFINWISQCISTPTFTVSINGGNGGFFKSTKGLRQGDPLSPYLFVLAMEAFSNL 671
Query: 768 SFKKFEESNVGR*FQLPS*M*KLKVIHRVFADDLMIFTRGDYLSVKIVCDALSMLGHVSG 947
++E + + + L + H +FADD+MIF G S+ +C+ L SG
Sbjct: 672 LHSRYESGLIHYHPKASN----LSISHLMFADDVMIFFDGGSFSLHGICETLDDFASWSG 727
Query: 948 LKANCLKSNILLASMDDLEKSRIFTLIRFPCG---FSCLGISLAQIYFKVADFSPLLDKV 1118
LK N KS++ LA ++ LE S FP G LG+ L ++A++ PLL+K+
Sbjct: 728 LKVNKDKSHLYLAGLNQLE-SNANAAYGFPIGTLPIRYLGLPLMNRKLRIAEYEPLLEKI 786
Query: 1119 SNTLQSWVRLDISYAGRLEVVRTVVRGIESFWLGILPIFVTVLEKITSFCRRFLSDG 1289
+ +SWV +S+AGR++++ +V+ G +FW+ + +++I S C RFL G
Sbjct: 787 TARFRSWVNKCLSFAGRIQLISSVIFGSINFWMSTFLLPKGCIKRIESLCSRFLWSG 843
Score = 29.3 bits (64), Expect(4) = 1e-52
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = +1
Query: 175 YSVDDIKNALFDIGDDKSPRPNGYTFTFF 261
+S +DI+ ALF + +KS P+G+T FF
Sbjct: 447 FSNEDIRAALFSLPRNKSCGPDGFTAEFF 475
Score = 24.6 bits (52), Expect(4) = 1e-52
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = +2
Query: 1316 LCLDKEHGGLGLR 1354
LCL K GGLGLR
Sbjct: 858 LCLPKSEGGLGLR 870
>emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1110
Score = 117 bits (292), Expect(3) = 2e-52
Identities = 48/135 (35%), Positives = 87/135 (64%)
Frame = +2
Query: 263 RKWNLVGIDFCGAIMEFFSIGMLLKQTNHVIVSLIPKKKHSKSVGDFRPISCCNVFYKVI 442
+ W + + I EFF+ + + N ++V+L+PK +H+ V +FRPI+CC V YK+I
Sbjct: 468 KSWGSIKQEIYAGIQEFFNNSRMHRPINCIVVTLLPKVQHATRVKEFRPIACCTVIYKII 527
Query: 443 TKLLASRLGKVLPTFIDDVEPAFVKGRSMVEDIHLAQDFMRGYTRKRTSPMFTLKIDLWK 622
+K+L +R+ ++ +++ + F+ GR + ++I LA + +RGYTRK SP +K+D+ K
Sbjct: 528 SKMLTNRMKGIIGEVVNEAQSGFIPGRHIADNILLASELIRGYTRKHMSPRCIMKVDIRK 587
Query: 623 IYDTMSWEFLQQVLH 667
YD++ W FL+ +L+
Sbjct: 588 AYDSVEWSFLETLLY 602
Score = 102 bits (255), Expect(3) = 2e-52
Identities = 64/231 (27%), Positives = 106/231 (45%), Gaps = 26/231 (11%)
Frame = +3
Query: 678 FLEKFIIWMMACVTAPPFSLGVNGENFXGVSFKK-----------------------FEE 788
F +F+ W+M CV+ +S+ VNG +K EE
Sbjct: 606 FPSRFVGWIMECVSTVSYSVLVNGIPTQPFQARKGLRQGDPMSPFLFALCMEYLSRCLEE 665
Query: 789 SNVGR*FQLPS*M*KLKVIHRVFADDLMIFTRGDYLSVKIVCDALSMLGHVSGLKANCLK 968
F +L + H +FADDL++F R D S+ + A H SGL A+ K
Sbjct: 666 LKGSPDFNFHPKCERLNITHLMFADDLLMFCRADKSSLDHMNVAFQKFSHASGLAASHEK 725
Query: 969 SNILLASMDDLEKSRIFTLIRFPCG---FSCLGISLAQIYFKVADFSPLLDKVSNTLQSW 1139
SNI +DD + + G F LG+ L A PL++ ++N Q+W
Sbjct: 726 SNIYFCGVDDETARELADYVHMQLGELPFRYLGVPLTSKKLTYAQCKPLVEMITNRAQTW 785
Query: 1140 VRLDISYAGRLEVVRTVVRGIESFWLGILPIFVTVLEKITSFCRRFLSDGK 1292
+ +SYAGRL+++++++ ++++W I P+ V++ + CR+FL GK
Sbjct: 786 MAKLLSYAGRLQLIKSILSSMQNYWAHIFPLSKKVIQAVEKVCRKFLWTGK 836
Score = 36.6 bits (83), Expect(3) = 2e-52
Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 12/77 (15%)
Frame = +1
Query: 73 DIQELFFNFYKEFLGITDEAIS------------IDETVDDFLVHDYSVDDIKNALFDIG 216
++QE FYK+ LG + + + L+ + + +I AL IG
Sbjct: 392 EVQEEILEFYKKLLGTRASTLMGVDLNTVRGGKCLSAQAKESLIREVASTEIDEALAGIG 451
Query: 217 DDKSPRPNGYTFTFFKK 267
+DK+P +G+ FFKK
Sbjct: 452 NDKAPGLDGFNAYFFKK 468
>gb|AAC33226.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1529
Score = 123 bits (309), Expect(4) = 7e-52
Identities = 60/132 (45%), Positives = 88/132 (66%)
Frame = +2
Query: 269 WNLVGIDFCGAIMEFFSIGMLLKQTNHVIVSLIPKKKHSKSVGDFRPISCCNVFYKVITK 448
W+L G DF AI FF G L K N I++LIPKK + + D+RPISCCNV YKVI+K
Sbjct: 782 WSLTGPDFIAAIQSFFVKGFLPKGLNATILALIPKKDEAIEMKDYRPISCCNVLYKVISK 841
Query: 449 LLASRLGKVLPTFIDDVEPAFVKGRSMVEDIHLAQDFMRGYTRKRTSPMFTLKIDLWKIY 628
+LA+RL +LP+FI + AFVK R ++E++ LA + ++ Y ++ +P +KID+ K +
Sbjct: 842 ILANRLKLLLPSFILQNQSAFVKERLLMENVLLATELVKDYHKESVTPRCAMKIDISKAF 901
Query: 629 DTMSWEFLQQVL 664
D++ W+FL L
Sbjct: 902 DSVQWQFLLNTL 913
Score = 91.7 bits (226), Expect(4) = 7e-52
Identities = 69/235 (29%), Positives = 101/235 (42%), Gaps = 28/235 (11%)
Frame = +3
Query: 669 SLKFLEKFIIWMMACVTAPPFSLGVNGE--NFXGVS---------------------FKK 779
+L F E F W+ C++ FS+ VNGE F G S
Sbjct: 915 ALNFPETFRHWIKLCISTATFSVQVNGELAGFFGSSRGLRQGCALSPYLFVICMNVLSHM 974
Query: 780 FEESNVGR*FQLPS*M*KLKVIHRVFADDLMIFTRGDYLSVKIVCDALSMLGHVSGLKAN 959
+E+ V R K+ + H FADDLM+F G S++ V + SGL+ +
Sbjct: 975 IDEAAVHRNIGYHPKCEKIGLTHLCFADDLMVFVDGHQWSIEGVINVFKEFAGRSGLQIS 1034
Query: 960 CLKSNILLASMDDLEKSRIFTLIRFPCG-----FSCLGISLAQIYFKVADFSPLLDKVSN 1124
KS I LA + R+ TL FP LG+ L AD+SPL++ V
Sbjct: 1035 LEKSTIYLAGVS--ASDRVQTLSSFPFANGQLPVRYLGLPLLTKQMTTADYSPLIEAVKT 1092
Query: 1125 TLQSWVRLDISYAGRLEVVRTVVRGIESFWLGILPIFVTVLEKITSFCRRFLSDG 1289
+ SW +SYAGRL ++ +V+ I +FW+ + + +I C FL G
Sbjct: 1093 KISSWTARSLSYAGRLALLNSVIVSIANFWMSAYRLPAGCIREIEKLCSAFLWSG 1147
Score = 34.7 bits (78), Expect(4) = 7e-52
Identities = 15/39 (38%), Positives = 25/39 (64%)
Frame = +1
Query: 148 TVDDFLVHDYSVDDIKNALFDIGDDKSPRPNGYTFTFFK 264
T + L + + ++I+ LF + ++KSP P+GYT FFK
Sbjct: 741 TDQNILTREVTGEEIQKVLFAMPNNKSPGPDGYTSEFFK 779
Score = 25.0 bits (53), Expect(4) = 7e-52
Identities = 22/98 (22%), Positives = 40/98 (40%), Gaps = 11/98 (11%)
Frame = +2
Query: 1313 TLCLDKEHGGLGLRPGTRCRIDALLSIKCHGMFMQR----RWIDHFYMKNFTIWDLNLKK 1480
++C K+ GGLG++ + L + + Q WI F ++ T W N +
Sbjct: 1161 SICQPKKEGGLGIKSLAEANKVSCLKLIWRLLSTQPSLWVTWIWTFIIRKGTFWSANERS 1220
Query: 1481 DFSLFI-KRLLSIQD------KLITVEGSVAAARLDAW 1573
++ K+LL ++ K+ GS + D W
Sbjct: 1221 SLGSWMWKKLLKYRELAKSMHKVEVRNGSSTSFWYDHW 1258
>gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transcriptase [Brassica napus]
Length = 1214
Score = 122 bits (305), Expect(4) = 2e-51
Identities = 57/134 (42%), Positives = 86/134 (64%)
Frame = +2
Query: 263 RKWNLVGIDFCGAIMEFFSIGMLLKQTNHVIVSLIPKKKHSKSVGDFRPISCCNVFYKVI 442
+ W++VG A+ EFF G LL Q N V+++PKK ++ + +FRPISCCN YKVI
Sbjct: 476 KTWSIVGPSLIAAVQEFFRSGRLLGQWNSTAVTMVPKKPNADRITEFRPISCCNAIYKVI 535
Query: 443 TKLLASRLGKVLPTFIDDVEPAFVKGRSMVEDIHLAQDFMRGYTRKRTSPMFTLKIDLWK 622
+KLLA RL +LP +I + AFVKGR + E++ LA + ++G+ + S LK+DL K
Sbjct: 536 SKLLARRLENILPLWISPSQSAFVKGRLLTENVLLATELVQGFGQANISSRGVLKVDLRK 595
Query: 623 IYDTMSWEFLQQVL 664
+D++ W F+ + L
Sbjct: 596 AFDSVGWGFIIETL 609
Score = 85.9 bits (211), Expect(4) = 2e-51
Identities = 58/227 (25%), Positives = 103/227 (45%), Gaps = 29/227 (12%)
Frame = +3
Query: 687 KFIIWMMACVTAPPFSLGVNG---------------------------ENFXGVSFKKFE 785
+F+ W+ C+T+ FS+ V+G E + KF
Sbjct: 617 RFVNWIKQCITSTSFSINVSGSLCGYFKGSKGLRQGDPLSPSLFVIAMEILSRLLENKFS 676
Query: 786 ESNVGR*FQLPS*M*KLKVIHRVFADDLMIFTRGDYLSVKIVCDALSMLGHVSGLKANCL 965
+ ++G + ++++ FADDLMIF G S++ + L ++SGL+ N
Sbjct: 677 DGSIGYHPKAS----EVRISSLAFADDLMIFYDGKASSLRGIKSVLESFKNLSGLEMNTE 732
Query: 966 KSNILLASMDDLEK--SRIFTLIRFPCGFSCLGISLAQIYFKVADFSPLLDKVSNTLQSW 1139
KS + A ++D +K + F + F LG+ L + +D+S L+DK++ W
Sbjct: 733 KSAVYTAGLEDTDKEDTLAFGFVNGTFPFRYLGLPLLHRKLRRSDYSQLIDKIAARFNHW 792
Query: 1140 VRLDISYAGRLEVVRTVVRGIESFWLGILPIFVTVLEKITSFCRRFL 1280
+S+AGRL+++ +V+ +FWL + L+ I C RFL
Sbjct: 793 ATKTLSFAGRLQLISSVIYSTVNFWLSSFILPKCCLKTIEQMCNRFL 839
Score = 42.4 bits (98), Expect(4) = 2e-51
Identities = 27/82 (32%), Positives = 37/82 (45%), Gaps = 14/82 (17%)
Frame = +1
Query: 73 DIQELFFNFYKEFLGITDEAISI--------------DETVDDFLVHDYSVDDIKNALFD 210
++Q +F+KE G + IS DE L + S DIK+ F
Sbjct: 398 ELQTHCVDFFKELFGSSSHLISAEGISQINSLTRFKCDENTRQLLEAEVSEADIKSEFFA 457
Query: 211 IGDDKSPRPNGYTFTFFKKVES 276
+ +KSP P+GYT FFKK S
Sbjct: 458 LPSNKSPGPDGYTSEFFKKTWS 479
Score = 22.7 bits (47), Expect(4) = 2e-51
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = +2
Query: 1319 CLDKEHGGLGLR 1354
CL K GGLGLR
Sbjct: 858 CLPKAEGGLGLR 869
>dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
thaliana]
Length = 1072
Score = 119 bits (299), Expect(4) = 3e-50
Identities = 59/132 (44%), Positives = 83/132 (62%)
Frame = +2
Query: 269 WNLVGIDFCGAIMEFFSIGMLLKQTNHVIVSLIPKKKHSKSVGDFRPISCCNVFYKVITK 448
W+++G + AI EFF G LLKQ N + LIPK ++ ++ +FRPISC N YKVI+K
Sbjct: 339 WSIIGPEVLAAIHEFFDSGQLLKQWNATTLVLIPKTSNACTISEFRPISCLNTLYKVISK 398
Query: 449 LLASRLGKVLPTFIDDVEPAFVKGRSMVEDIHLAQDFMRGYTRKRTSPMFTLKIDLWKIY 628
LL SRL +L I + AF+ GRS+ E++ LA + + GY R SP LK+DL K +
Sbjct: 399 LLTSRLQGLLSAVIGHSQSAFLPGRSLAENVLLATEMVHGYNRLNISPRGMLKVDLKKAF 458
Query: 629 DTMSWEFLQQVL 664
D++ WEF+ L
Sbjct: 459 DSVKWEFVTAAL 470
Score = 100 bits (248), Expect(4) = 3e-50
Identities = 68/237 (28%), Positives = 112/237 (47%), Gaps = 30/237 (12%)
Frame = +3
Query: 669 SLKFLEKFIIWMMACVTAPPFSLGVNG---------------------------ENFXGV 767
+L E++I W+ C+T P F++ VNG E F +
Sbjct: 472 ALAIPERYINWIHQCITTPSFTISVNGATGGFFRSTKGLRQGDPLSPYLFVLAMEVFSKL 531
Query: 768 SFKKFEESNVGR*FQLPS*M*KLKVIHRVFADDLMIFTRGDYLSVKIVCDALSMLGHVSG 947
+ +++ + + L + H +FADD+MIF G S+ +C+ L SG
Sbjct: 532 LYSRYDSGYIHYHPKAGD----LSISHLMFADDVMIFFDGGSSSMHGICETLDDFADWSG 587
Query: 948 LKANCLKSNILLASMDDLEKSRIFTLIRFPCG---FSCLGISLAQIYFKVADFSPLLDKV 1118
LK N KS + A +D L + FP G LG+ L ++AD+ PLL+K+
Sbjct: 588 LKVNKDKSQLFQAGLD-LSERITSAAYGFPAGTFPIRYLGLPLMCRKLRIADYGPLLEKL 646
Query: 1119 SNTLQSWVRLDISYAGRLEVVRTVVRGIESFWLGILPIFVTVLEKITSFCRRFLSDG 1289
S L+SWV +S+AGR +++ +V+ G+ +FW+ + ++KI S C +FL G
Sbjct: 647 SARLRSWVSKALSFAGRTQLISSVIFGLINFWMSTFLLPKGCIKKIESLCSKFLWAG 703
Score = 25.8 bits (55), Expect(4) = 3e-50
Identities = 15/69 (21%), Positives = 32/69 (46%), Gaps = 13/69 (18%)
Frame = +1
Query: 97 FYKEFLGITDEAISIDETVDDFLV-------------HDYSVDDIKNALFDIGDDKSPRP 237
+Y+ LG + S+++ + L+ ++ D+IK A + +K+ P
Sbjct: 268 YYERLLGSIESPFSMEQEDMNLLLTYRCSQDQCSELEKSFTDDEIKAAFKSLPRNKTSGP 327
Query: 238 NGYTFTFFK 264
+GY+ FF+
Sbjct: 328 DGYSVEFFR 336
Score = 23.5 bits (49), Expect(4) = 3e-50
Identities = 22/95 (23%), Positives = 36/95 (37%), Gaps = 10/95 (10%)
Frame = +2
Query: 1319 CLDKEHGGLGLRPGTRCRIDALLSIKC----HGMFMQRRWIDHFYMKNFTIWDLNLKKDF 1486
CL K GGLG R LL + + +W H + + + W +N +
Sbjct: 719 CLPKSEGGLGFRSFGEWNKTLLLRLIWVLFDRDTSLWAQWQRHHRLGHASFWQVNALQTD 778
Query: 1487 SLFIKRLLSIQ---DKLITVE---GSVAAARLDAW 1573
K LL+++ +K I + G + D W
Sbjct: 779 PWTWKMLLNLRPLAEKFIKAKVGNGGTVSFWFDCW 813
>dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]
Length = 1072
Score = 119 bits (299), Expect(4) = 3e-50
Identities = 59/132 (44%), Positives = 83/132 (62%)
Frame = +2
Query: 269 WNLVGIDFCGAIMEFFSIGMLLKQTNHVIVSLIPKKKHSKSVGDFRPISCCNVFYKVITK 448
W+++G + AI EFF G LLKQ N + LIPK ++ ++ +FRPISC N YKVI+K
Sbjct: 339 WSIIGPEVLAAIHEFFDSGQLLKQWNATTLVLIPKTSNACTISEFRPISCLNTLYKVISK 398
Query: 449 LLASRLGKVLPTFIDDVEPAFVKGRSMVEDIHLAQDFMRGYTRKRTSPMFTLKIDLWKIY 628
LL SRL +L I + AF+ GRS+ E++ LA + + GY R SP LK+DL K +
Sbjct: 399 LLTSRLQGLLSAVIGHSQSAFLPGRSLAENVLLATEMVHGYNRLNISPRGMLKVDLKKAF 458
Query: 629 DTMSWEFLQQVL 664
D++ WEF+ L
Sbjct: 459 DSVKWEFVTAAL 470
Score = 100 bits (248), Expect(4) = 3e-50
Identities = 68/237 (28%), Positives = 112/237 (47%), Gaps = 30/237 (12%)
Frame = +3
Query: 669 SLKFLEKFIIWMMACVTAPPFSLGVNG---------------------------ENFXGV 767
+L E++I W+ C+T P F++ VNG E F +
Sbjct: 472 ALAIPERYINWIHQCITTPSFTISVNGATGGFFRSTKGLRQGDPLSPYLFVLAMEVFSKL 531
Query: 768 SFKKFEESNVGR*FQLPS*M*KLKVIHRVFADDLMIFTRGDYLSVKIVCDALSMLGHVSG 947
+ +++ + + L + H +FADD+MIF G S+ +C+ L SG
Sbjct: 532 LYSRYDSGYIHYHPKAGD----LSISHLMFADDVMIFFDGGSSSMHGICETLDDFADWSG 587
Query: 948 LKANCLKSNILLASMDDLEKSRIFTLIRFPCG---FSCLGISLAQIYFKVADFSPLLDKV 1118
LK N KS + A +D L + FP G LG+ L ++AD+ PLL+K+
Sbjct: 588 LKVNKDKSQLFQAGLD-LSERITSAAYGFPAGTFPIRYLGLPLMCRKLRIADYGPLLEKL 646
Query: 1119 SNTLQSWVRLDISYAGRLEVVRTVVRGIESFWLGILPIFVTVLEKITSFCRRFLSDG 1289
S L+SWV +S+AGR +++ +V+ G+ +FW+ + ++KI S C +FL G
Sbjct: 647 SARLRSWVSKALSFAGRTQLISSVIFGLINFWMSTFLLPKGCIKKIESLCSKFLWAG 703
Score = 25.8 bits (55), Expect(4) = 3e-50
Identities = 15/69 (21%), Positives = 32/69 (46%), Gaps = 13/69 (18%)
Frame = +1
Query: 97 FYKEFLGITDEAISIDETVDDFLV-------------HDYSVDDIKNALFDIGDDKSPRP 237
+Y+ LG + S+++ + L+ ++ D+IK A + +K+ P
Sbjct: 268 YYERLLGSIESPFSMEQEDMNLLLTYRCSQDQCSELEKSFTDDEIKAAFKSLPRNKTSGP 327
Query: 238 NGYTFTFFK 264
+GY+ FF+
Sbjct: 328 DGYSVEFFR 336
Score = 23.5 bits (49), Expect(4) = 3e-50
Identities = 22/95 (23%), Positives = 36/95 (37%), Gaps = 10/95 (10%)
Frame = +2
Query: 1319 CLDKEHGGLGLRPGTRCRIDALLSIKC----HGMFMQRRWIDHFYMKNFTIWDLNLKKDF 1486
CL K GGLG R LL + + +W H + + + W +N +
Sbjct: 719 CLPKSEGGLGFRSFGEWNKTLLLRLIWVLFDRDTSLWAQWQRHHRLGHASFWQVNALQTD 778
Query: 1487 SLFIKRLLSIQ---DKLITVE---GSVAAARLDAW 1573
K LL+++ +K I + G + D W
Sbjct: 779 PWTWKMLLNLRPLAEKFIKAKVGNGGTVSFWFDCW 813
>emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1114
Score = 106 bits (265), Expect(3) = 1e-48
Identities = 48/134 (35%), Positives = 80/134 (59%)
Frame = +2
Query: 263 RKWNLVGIDFCGAIMEFFSIGMLLKQTNHVIVSLIPKKKHSKSVGDFRPISCCNVFYKVI 442
+ W ++ + I++FF G + K N V+LIPK +K D+RPI+CC+ YK+I
Sbjct: 471 KSWLVIKQEIYEGILDFFENGFMHKPINCTAVTLIPKIDEAKHAKDYRPIACCSTLYKII 530
Query: 443 TKLLASRLGKVLPTFIDDVEPAFVKGRSMVEDIHLAQDFMRGYTRKRTSPMFTLKIDLWK 622
+K+L RL V+ +D + F+ R + ++I LA + +RGY R+ SP +K+D+ K
Sbjct: 531 SKILTKRLQAVITEVVDCAQTGFIPERHIGDNILLATELIRGYNRRHVSPRCVIKVDIRK 590
Query: 623 IYDTMSWEFLQQVL 664
YD++ W FL+ +L
Sbjct: 591 AYDSVEWVFLESML 604
Score = 98.6 bits (244), Expect(3) = 1e-48
Identities = 66/232 (28%), Positives = 110/232 (47%), Gaps = 26/232 (11%)
Frame = +3
Query: 672 LKFLEKFIIWMMACVTAPPFSLGVNG------------------ENFXGVSFKKFEESNV 797
L F FI W+MACV +S+ +NG F ++ +
Sbjct: 607 LGFPSMFIRWIMACVKTVSYSILLNGIPSIPFDAQKGLRQGDPLSPFLFALSMEYLSRCM 666
Query: 798 GR*-----FQLPS*M*KLKVIHRVFADDLMIFTRGDYLSVKIVCDALSMLGHVSGLKANC 962
G F ++K+ H +FADDL++F R D S+ + A + SGL+A+
Sbjct: 667 GNMCKDPEFNFHPKCERIKLTHLMFADDLLMFARADASSISKIMAAFNSFSKASGLQASI 726
Query: 963 LKSNILLASMDDLEKSRIFTLIRFPCG---FSCLGISLAQIYFKVADFSPLLDKVSNTLQ 1133
KS I + E ++ I+ P G F LG+ LA + PL+DK++ Q
Sbjct: 727 EKSCIYFGGVCHEEAEQLADRIQMPIGSLPFRYLGVPLASKKLNFSQCKPLIDKITTRAQ 786
Query: 1134 SWVRLDISYAGRLEVVRTVVRGIESFWLGILPIFVTVLEKITSFCRRFLSDG 1289
WV +SYAGRL++V+T++ ++++W I P+ +++ + + CR+FL G
Sbjct: 787 GWVAHLLSYAGRLQLVKTILYSMQNYWGQIFPLPKKLIKAVETTCRKFLWTG 838
Score = 38.1 bits (87), Expect(3) = 1e-48
Identities = 30/99 (30%), Positives = 41/99 (41%), Gaps = 12/99 (12%)
Frame = +1
Query: 7 RNVKKKFVAALIKDDGTTTTFCDIQELFFNFYKEFLGITD---EAISI---------DET 150
R + K V T +IQ NFY+ LG + EAI + T
Sbjct: 373 RKARNKIVLLQNDRGDQLTENTEIQNEICNFYRRLLGTSSSQLEAIDLHVVRVGAKLSAT 432
Query: 151 VDDFLVHDYSVDDIKNALFDIGDDKSPRPNGYTFTFFKK 267
LV ++ +I AL DI D K+P +G+ FFKK
Sbjct: 433 SCAQLVQPITIQEIDQALADIDDTKAPGLDGFNSVFFKK 471
>gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcript_fact.hmm, score:
72.31) [Arabidopsis thaliana]
Length = 928
Score = 130 bits (326), Expect(3) = 3e-47
Identities = 63/132 (47%), Positives = 90/132 (68%)
Frame = +2
Query: 269 WNLVGIDFCGAIMEFFSIGMLLKQTNHVIVSLIPKKKHSKSVGDFRPISCCNVFYKVITK 448
WN++G +F AI FF+ G L K N I++LIPKKK +K + D+RPISCCNV YKVI+K
Sbjct: 373 WNIIGAEFILAIQSFFAKGFLPKGINSTILALIPKKKEAKEMKDYRPISCCNVLYKVISK 432
Query: 449 LLASRLGKVLPTFIDDVEPAFVKGRSMVEDIHLAQDFMRGYTRKRTSPMFTLKIDLWKIY 628
++A+RL VLP FI + AFVK R ++E++ LA + ++ Y + S LKID+ K +
Sbjct: 433 IIANRLKLVLPKFIVGNQSAFVKDRLLIENVLLATEIVKDYHKDSVSSRCALKIDISKAF 492
Query: 629 DTMSWEFLQQVL 664
D++ W+FL VL
Sbjct: 493 DSVQWKFLINVL 504
Score = 71.6 bits (174), Expect(3) = 3e-47
Identities = 59/233 (25%), Positives = 94/233 (40%), Gaps = 26/233 (11%)
Frame = +3
Query: 669 SLKFLEKFIIWMMACVTAPPFSLGVNGENFXGVS----------------------FKKF 782
++ F +F W+ C+T FS+ VNGE S K
Sbjct: 506 AMNFPPEFTHWITLCITTASFSVQVNGELAGVFSSARELRQGCSLSPYLFVISMDVLSKM 565
Query: 783 EESNVG-R*FQLPS*M*KLKVIHRVFADDLMIFTRGDYLSVKIVCDALSMLGHVSGLKAN 959
+ VG R F + + H FADDLMI + G S+ + L SGLK +
Sbjct: 566 LDKAVGARQFGYHPKCRAIGLTHLSFADDLMILSDGKVRSIDGIVKVLYEFAKWSGLKIS 625
Query: 960 CLKSNILLASMDDLEKSRIFTLIRFPCG---FSCLGISLAQIYFKVADFSPLLDKVSNTL 1130
KS + LA + I F G LG+ L +D PL++++ +
Sbjct: 626 MEKSTMYLAGVQASVYQEIVQKFSFDVGKLPVRYLGLPLVSKRLTASDCLPLIEQLRKKI 685
Query: 1131 QSWVRLDISYAGRLEVVRTVVRGIESFWLGILPIFVTVLEKITSFCRRFLSDG 1289
++W +S+AGRL ++ + + I +FW+ + + +I C FL G
Sbjct: 686 EAWTSRFLSFAGRLNLISSTLWSICNFWMAAFRLPRACIREIDKLCSAFLWSG 738
Score = 37.4 bits (85), Expect(3) = 3e-47
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 14/69 (20%)
Frame = +1
Query: 100 YKEFLGITD---EAISIDETVD-----------DFLVHDYSVDDIKNALFDIGDDKSPRP 237
++EFL + E I+++E D + L + S ++I +F + +DKSP P
Sbjct: 302 FREFLQLIPNDFEGIAVEELQDLLPYRCSDSDKEMLTNHVSAEEIHKVVFSMPNDKSPGP 361
Query: 238 NGYTFTFFK 264
+GYT F+K
Sbjct: 362 DGYTAEFYK 370
>dbj|BAB01845.1| non-LTR retroelement reverse transcriptase-like protein
[Arabidopsis thaliana]
Length = 893
Score = 112 bits (280), Expect(4) = 7e-45
Identities = 58/128 (45%), Positives = 78/128 (60%)
Frame = +2
Query: 269 WNLVGIDFCGAIMEFFSIGMLLKQTNHVIVSLIPKKKHSKSVGDFRPISCCNVFYKVITK 448
W +VG + A+ EFF G LLKQ N + LIPK +S + DFRPISC N YKVI K
Sbjct: 480 WFVVGPEVTEAVQEFFRSGQLLKQWNATTLVLIPKITNSSKMTDFRPISCLNTLYKVIAK 539
Query: 449 LLASRLGKVLPTFIDDVEPAFVKGRSMVEDIHLAQDFMRGYTRKRTSPMFTLKIDLWKIY 628
LL SRL K+L I + AF+ GR + E++ LA + + GY K S LK+DL K +
Sbjct: 540 LLTSRLKKLLNEVISPSQSAFLPGRLLSENVLLATEIVHGYNTKNISSRGMLKVDLRKAF 599
Query: 629 DTMSWEFL 652
D++ W+F+
Sbjct: 600 DSVRWDFI 607
Score = 85.9 bits (211), Expect(4) = 7e-45
Identities = 65/235 (27%), Positives = 110/235 (46%), Gaps = 33/235 (14%)
Frame = +3
Query: 684 EKFIIWMMACVTAPPFSLGVNGENFXGVSFKKFEESNVGR*-------------FQLPS* 824
EKF+ W+ C++ P FS+ VNG S F +SN G ++ S
Sbjct: 618 EKFVCWINQCISTPYFSVMVNG------SSSGFFKSNKGLRQGDPLSPYLFVLAMEVFSS 671
Query: 825 M*K----------------LKVIHRVFADDLMIFTRGDYLSVKIVCDALSMLGHVSGLKA 956
+ K L + H +FADD+M+F G S+ + +AL SGL
Sbjct: 672 LLKARFDAGYIHYHPKTADLSISHLMFADDVMVFFDGGSSSLHGISEALDDFASWSGLHV 731
Query: 957 NCLKSNILLASMDDLEKSRI----FTLIRFPCGFSCLGISLAQIYFKVADFSPLLDKVSN 1124
N K+N+ LA D++E I F + P + LG+ L K++++ ++
Sbjct: 732 NKDKTNLYLAGTDEVEALAISHYGFPISTLPIRY--LGLPLMSRKLKISEY-----ELVK 784
Query: 1125 TLQSWVRLDISYAGRLEVVRTVVRGIESFWLGILPIFVTVLEKITSFCRRFLSDG 1289
+SW +S+AGR++++ +V+ G+ +FW+ + + ++KI S C RFL G
Sbjct: 785 RFRSWAVKSLSFAGRVQLITSVITGLVNFWMSTFVLLLGCVKKIESLCSRFLWSG 839
Score = 30.4 bits (67), Expect(4) = 7e-45
Identities = 17/45 (37%), Positives = 26/45 (57%)
Frame = +1
Query: 136 SIDETVDDFLVHDYSVDDIKNALFDIGDDKSPRPNGYTFTFFKKV 270
S+D+ D L +S DI+ A F + +K+ P+GY+ FFK V
Sbjct: 437 SVDQIND--LERSFSDLDIQEAFFSLPRNKASGPDGYSSEFFKGV 479
Score = 22.3 bits (46), Expect(4) = 7e-45
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +2
Query: 1316 LCLDKEHGGLGLR 1354
+CL K GG+GLR
Sbjct: 854 VCLPKNEGGVGLR 866
>emb|CAA66812.1| non-ltr retrotransposon reverse transcriptase-like protein
[Arabidopsis thaliana]
Length = 893
Score = 112 bits (280), Expect(3) = 1e-44
Identities = 58/128 (45%), Positives = 78/128 (60%)
Frame = +2
Query: 269 WNLVGIDFCGAIMEFFSIGMLLKQTNHVIVSLIPKKKHSKSVGDFRPISCCNVFYKVITK 448
W +VG + A+ EFF G LLKQ N + LIPK +S + DFRPISC N YKVI K
Sbjct: 480 WFVVGPEVTEAVQEFFRSGQLLKQWNATTLVLIPKITNSSKMTDFRPISCLNTLYKVIAK 539
Query: 449 LLASRLGKVLPTFIDDVEPAFVKGRSMVEDIHLAQDFMRGYTRKRTSPMFTLKIDLWKIY 628
LL SRL K+L I + AF+ GR + E++ LA + + GY K S LK+DL K +
Sbjct: 540 LLTSRLKKLLNEVISPSQSAFLPGRLLSENVLLATEIVHGYNTKNISSRGMLKVDLRKAF 599
Query: 629 DTMSWEFL 652
D++ W+F+
Sbjct: 600 DSVRWDFI 607
Score = 87.4 bits (215), Expect(3) = 1e-44
Identities = 62/233 (26%), Positives = 107/233 (45%), Gaps = 31/233 (13%)
Frame = +3
Query: 684 EKFIIWMMACVTAPPFSLGVNG---------------------------ENFXGVSFKKF 782
EKF+ W+ C++ P FS+ VNG E F + +F
Sbjct: 618 EKFVCWINQCISTPYFSVMVNGSSSGFFKSNKGLRQGDPLSPYLFVLAMEVFSSLLKARF 677
Query: 783 EESNVGR*FQLPS*M*KLKVIHRVFADDLMIFTRGDYLSVKIVCDALSMLGHVSGLKANC 962
+ + Q L + H +FADD+M+F G S+ + +AL SGL N
Sbjct: 678 DAGYI----QYHPKTADLSISHLMFADDVMVFFDGGSSSLHGISEALDDFASWSGLHVNK 733
Query: 963 LKSNILLASMDDLEKSRI----FTLIRFPCGFSCLGISLAQIYFKVADFSPLLDKVSNTL 1130
K+N+ LA D++E I F + P + LG+ L K++++ ++
Sbjct: 734 DKTNLYLAGTDEVEALAISHYGFPISTLPIRY--LGLPLMSRKLKISEY-----ELVKRF 786
Query: 1131 QSWVRLDISYAGRLEVVRTVVRGIESFWLGILPIFVTVLEKITSFCRRFLSDG 1289
+SW +S+AGR++++ +V+ G+ +FW+ + + ++KI S C RFL G
Sbjct: 787 RSWAVKSLSFAGRVQLITSVITGLVNFWMSTFVLLLGCVKKIESLCSRFLWSG 839
Score = 30.4 bits (67), Expect(3) = 1e-44
Identities = 17/45 (37%), Positives = 26/45 (57%)
Frame = +1
Query: 136 SIDETVDDFLVHDYSVDDIKNALFDIGDDKSPRPNGYTFTFFKKV 270
S+D+ D L +S DI+ A F + +K+ P+GY+ FFK V
Sbjct: 437 SVDQIND--LERSFSDLDIQEAFFSLPRNKASGPDGYSSEFFKGV 479
>emb|CAB45965.1| putative reverse transcriptase [Arabidopsis thaliana]
gi|7267919|emb|CAB78261.1| putative reverse
transcriptase [Arabidopsis thaliana]
Length = 662
Score = 108 bits (269), Expect(3) = 1e-44
Identities = 49/107 (45%), Positives = 75/107 (70%)
Frame = +2
Query: 344 NHVIVSLIPKKKHSKSVGDFRPISCCNVFYKVITKLLASRLGKVLPTFIDDVEPAFVKGR 523
N I++LIPKK +K + D+RPISCCNV YKVI+K++A+RL +VLP FI + AF+K R
Sbjct: 28 NSTILALIPKKMEAKEIKDYRPISCCNVLYKVISKIIANRLKRVLPQFIAGNQSAFIKDR 87
Query: 524 SMVEDIHLAQDFMRGYTRKRTSPMFTLKIDLWKIYDTMSWEFLQQVL 664
++E++ LA + ++ Y + S +KID+ K +D++ W FL+ VL
Sbjct: 88 LLIENLLLATELVKDYHKDSVSERCAIKIDISKAFDSVQWSFLRNVL 134
Score = 87.0 bits (214), Expect(3) = 1e-44
Identities = 66/235 (28%), Positives = 104/235 (44%), Gaps = 28/235 (11%)
Frame = +3
Query: 669 SLKFLEKFIIWMMACVTAPPFSLGVNGE------NFXG-----------------VSFKK 779
+L F ++F+ W+M CVT FS+ VN E + G V KK
Sbjct: 136 TLDFPQEFVHWIMLCVTTASFSVQVNRELAGYFNSLRGLRQGCSLTPYLFVIVMDVLSKK 195
Query: 780 FEESNVGR*FQLPS*M*KLKVIHRVFADDLMIFTRGDYLSVKIVCDALSMLGHVSGLKAN 959
+ + R F L + H FADD+M+ T G S++ + + SGLK +
Sbjct: 196 LDRAAGLRKFGYHPKCKNLGLTHLSFADDIMVLTDGKLRSLEGIVEVFDSFAKQSGLKIS 255
Query: 960 CLKSNILLASMD-----DLEKSRIFTLIRFPCGFSCLGISLAQIYFKVADFSPLLDKVSN 1124
K+ I A + + E F + R P + CL + + F D+SPLL+++
Sbjct: 256 MAKTTIYFAGISKSVCKEFEDQFHFAVGRLPVRYLCLPLVTKR--FTSQDYSPLLEQIKR 313
Query: 1125 TLQSWVRLDISYAGRLEVVRTVVRGIESFWLGILPIFVTVLEKITSFCRRFLSDG 1289
+ +W +SYAGRL +V +V+ I +FWL + + +I C FL G
Sbjct: 314 RIGTWTARFLSYAGRLNLVSSVLWSICNFWLSAFRLPRECVREIDKLCSAFLWSG 368
Score = 35.0 bits (79), Expect(3) = 1e-44
Identities = 26/98 (26%), Positives = 39/98 (39%), Gaps = 10/98 (10%)
Frame = +2
Query: 1310 KTLCLDKEHGGLGLRP----GTRCRIDALLSIKCHGMFMQRRWIDHFYMKNFTIWDLNLK 1477
+T+C K GGLGL+ C + + I G + +WI + +K T W
Sbjct: 381 ETVCRPKREGGLGLQSIKEANDVCCLKLIWRIVSQGDSLWVQWIRTYLLKRNTFWSFRSA 440
Query: 1478 KDFSLFIKRLLSIQD------KLITVEGSVAAARLDAW 1573
S K+LL +D K+ G A+ D W
Sbjct: 441 SQGSWMWKKLLKYRDTAKAFSKVDIRNGETASFWYDDW 478
>gb|AAC67331.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1449
Score = 126 bits (316), Expect(3) = 3e-38
Identities = 60/134 (44%), Positives = 89/134 (66%)
Frame = +2
Query: 263 RKWNLVGIDFCGAIMEFFSIGMLLKQTNHVIVSLIPKKKHSKSVGDFRPISCCNVFYKVI 442
R W+++G +F A+ FF G L K N I++LIPKK +K + D+RPISCCNV YKVI
Sbjct: 898 RAWDIIGAEFVLAVKSFFEKGFLPKGVNTTILALIPKKLEAKEMKDYRPISCCNVIYKVI 957
Query: 443 TKLLASRLGKVLPTFIDDVEPAFVKGRSMVEDIHLAQDFMRGYTRKRTSPMFTLKIDLWK 622
+K++A+RL VLP FI + AFVK R ++E++ LA + ++ Y + S +KID+ K
Sbjct: 958 SKIIANRLKHVLPNFIAGNQSAFVKDRLLIENLLLATELVKDYHKDTISGRCAIKIDISK 1017
Query: 623 IYDTMSWEFLQQVL 664
+D++ W FL+ VL
Sbjct: 1018 AFDSVQWSFLKNVL 1031
Score = 48.5 bits (114), Expect(3) = 3e-38
Identities = 33/90 (36%), Positives = 47/90 (52%), Gaps = 15/90 (16%)
Frame = +1
Query: 43 KDDGTT-TTFCDIQELFFNFYKEFL--------GITDEAIS------IDETVDDFLVHDY 177
K+DG+T TT DI+ F++EFL GIT E ++ D L
Sbjct: 809 KEDGSTATTKDDIKNETERFFQEFLQLIPNDYEGITVEKLTSLLPYHCSPAEKDMLTASV 868
Query: 178 SVDDIKNALFDIGDDKSPRPNGYTFTFFKK 267
S +I+ ALF + +DKSP P+GYT F+K+
Sbjct: 869 SAKEIRGALFSMPNDKSPGPDGYTSEFYKR 898
Score = 33.9 bits (76), Expect(3) = 3e-38
Identities = 14/29 (48%), Positives = 20/29 (68%)
Frame = +3
Query: 666 TSLKFLEKFIIWMMACVTAPPFSLGVNGE 752
++L F +F+ W+M CVT FS+ VNGE
Sbjct: 1032 SALDFPPEFVHWVMLCVTTASFSVQVNGE 1060
>gb|AAF87143.1|AC002423_8 T23E23.16 [Arabidopsis thaliana]
Length = 653
Score = 88.2 bits (217), Expect(3) = 6e-38
Identities = 63/233 (27%), Positives = 101/233 (43%), Gaps = 26/233 (11%)
Frame = +3
Query: 669 SLKFLEKFIIWMMACVTAPPFSLGVNGENFX-----------------------GVSFKK 779
S+ F +F+ W+M C++ FS+ VNGE V K
Sbjct: 145 SMDFPMEFVHWIMLCISTASFSVQVNGELVGFFQSKRGLRQGCSLSPYLFVMSMDVLSKL 204
Query: 780 FEESNVGR*FQLPS*M*KLKVIHRVFADDLMIFTRGDYLSVKIVCDALSMLGHVSGLKAN 959
+++ + F S +L + H FADDLM+ + G S+ + + + SGLK +
Sbjct: 205 LDQAASAKKFGYHSRCKELSLTHLSFADDLMVLSDGKVRSIDGIVEVFDIFAKFSGLKIS 264
Query: 960 CLKSNILLASMDDLEKSRIFTLIRFPCG---FSCLGISLAQIYFKVADFSPLLDKVSNTL 1130
KS I LA + + I +F G LG+ L D+SPLL+ + +
Sbjct: 265 MEKSTIYLAGVTEDVYHEIQNRYQFDVGQLPVRYLGLPLVTKRLTATDYSPLLEHIKKKI 324
Query: 1131 QSWVRLDISYAGRLEVVRTVVRGIESFWLGILPIFVTVLEKITSFCRRFLSDG 1289
+W +SYAGRL ++ +V+ I +FWL + + +I C FL G
Sbjct: 325 GTWTTRYLSYAGRLNLITSVLWSICNFWLAAFRLPRECIREIDKICSAFLWSG 377
Score = 87.0 bits (214), Expect(3) = 6e-38
Identities = 38/110 (34%), Positives = 70/110 (63%), Gaps = 2/110 (1%)
Frame = +2
Query: 341 TNHVIVSLIP--KKKHSKSVGDFRPISCCNVFYKVITKLLASRLGKVLPTFIDDVEPAFV 514
T+++ + +P + +RP+SCCNV YK+I+K++A+RL VLP FI + AFV
Sbjct: 34 TSYICIHFLPLLSSPTGHFISHYRPLSCCNVIYKIISKIIANRLKMVLPKFIAGNQTAFV 93
Query: 515 KGRSMVEDIHLAQDFMRGYTRKRTSPMFTLKIDLWKIYDTMSWEFLQQVL 664
K R ++E++ LA + ++ Y ++ S +KID+ K ++++ W F++ +L
Sbjct: 94 KDRLLIENLLLATELVKDYHKESVSSRCAIKIDISKAFNSVQWSFIRNIL 143
Score = 32.3 bits (72), Expect(3) = 6e-38
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Frame = +2
Query: 1304 CLKTLCLDKEHGGLGLRPGTRCR----IDALLSIKCHGMFMQRRWIDHFYMKNFTIWDL 1468
C +C K+ GGLGLR + + I H + RWI+ + +K+ T W +
Sbjct: 388 CWGDVCKPKQEGGLGLRSLKEMNEVSCLKLIWRIVSHTNSLWVRWIEQYLLKHDTFWSV 446
>gb|AAC19278.1| T14P8.10 [Arabidopsis thaliana] gi|7269009|emb|CAB80742.1|
AT4g02490 [Arabidopsis thaliana]
Length = 657
Score = 98.6 bits (244), Expect(4) = 6e-37
Identities = 48/132 (36%), Positives = 75/132 (56%)
Frame = +2
Query: 269 WNLVGIDFCGAIMEFFSIGMLLKQTNHVIVSLIPKKKHSKSVGDFRPISCCNVFYKVITK 448
W +V F AI EFF G LLK N ++LIPK + + FRP++CC YKVIT+
Sbjct: 26 WPIVKESFIAAIKEFFLTGHLLKGFNATAITLIPKVPGADQLNLFRPVACCTTIYKVITR 85
Query: 449 LLASRLGKVLPTFIDDVEPAFVKGRSMVEDIHLAQDFMRGYTRKRTSPMFTLKIDLWKIY 628
L++ RL + + + F+KGR + E++ LA + + + + + L++DL K Y
Sbjct: 86 LISKRLNLFIDQAVQSNQVGFIKGRLLCENVLLASELVDNFQAEGDTSRGCLQVDLTKAY 145
Query: 629 DTMSWEFLQQVL 664
D ++WEFL +L
Sbjct: 146 DNVNWEFLINIL 157
Score = 80.1 bits (196), Expect(4) = 6e-37
Identities = 59/227 (25%), Positives = 99/227 (43%), Gaps = 27/227 (11%)
Frame = +3
Query: 690 FIIWMMACVTAPPFSLGVNGEN---FXG--------------------VSFKKFEESNVG 800
FI W+ C++ P +S+ NGE F G + + + V
Sbjct: 166 FINWIWVCISTPSYSIAYNGELIGFFVGKKGIRQGDPMSSHLFVLVMDILARSLDLGAVE 225
Query: 801 R*FQLPS*M*KLKVIHRVFADDLMIFTRGDYLSVKIVCDALSMLGHVSGLKANCLKSNIL 980
F L + H FADD+++F G S+ + D L + SGL N K+ +L
Sbjct: 226 GRFVLHPKCLAPMITHLSFADDILVFCDGSLSSLVAILDILDVFKKGSGLGINLQKTALL 285
Query: 981 LASMDDLEKSRIFT----LIRFPCGFSCLGISLAQIYFKVADFSPLLDKVSNTLQSWVRL 1148
L + E++RI + + LG+ L K D+ PL+D++++ SW
Sbjct: 286 LDG-GNFERNRIMAASLGVSQGSLPVRYLGVPLMSQKMKKHDYQPLVDRINSRFTSWTAR 344
Query: 1149 DISYAGRLEVVRTVVRGIESFWLGILPIFVTVLEKITSFCRRFLSDG 1289
+S+AGRL+++++V+ +FW I + L K+ C FL G
Sbjct: 345 HLSFAGRLQLLKSVIYSTINFWASIFILPNQCLHKLEQMCNAFLWSG 391
Score = 23.5 bits (49), Expect(4) = 6e-37
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +1
Query: 199 ALFDIGDDKSPRPNGYTFTFF 261
ALF + +K+P P+G+ FF
Sbjct: 2 ALFSMPRNKAPGPDGFPVEFF 22
Score = 21.9 bits (45), Expect(4) = 6e-37
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +2
Query: 1316 LCLDKEHGGLGLR 1354
+C KE GGLGL+
Sbjct: 406 VCSSKESGGLGLK 418
>ref|XP_006599894.1| PREDICTED: uncharacterized protein LOC102668020 [Glycine max]
Length = 603
Score = 145 bits (366), Expect(2) = 1e-36
Identities = 65/134 (48%), Positives = 94/134 (70%)
Frame = +2
Query: 263 RKWNLVGIDFCGAIMEFFSIGMLLKQTNHVIVSLIPKKKHSKSVGDFRPISCCNVFYKVI 442
+ WN++G D A+ EFF+ G +LKQ NH I++LIPK + V FRPISCCN+ YK++
Sbjct: 291 KAWNIIGDDIFEAVNEFFTTGKILKQLNHAIIALIPKHDQASQVNHFRPISCCNLLYKIV 350
Query: 443 TKLLASRLGKVLPTFIDDVEPAFVKGRSMVEDIHLAQDFMRGYTRKRTSPMFTLKIDLWK 622
+K+LA+R+ VL T I + + AF+K + M+++I L Q+ +R Y KR+SP LKIDL K
Sbjct: 351 SKILANRIAPVLETIIGETQTAFIKNKKMMDNIFLIQEILRKYAWKRSSPRCLLKIDLHK 410
Query: 623 IYDTMSWEFLQQVL 664
YD++SWEFL +L
Sbjct: 411 AYDSISWEFLDWML 424
Score = 37.4 bits (85), Expect(2) = 1e-36
Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 12/100 (12%)
Frame = +1
Query: 4 KRNVKKKFVAALIKDDGTTTTFCD-IQELFFNFYKEFLGITD----EAISIDET-----V 153
KRN+ +F+AA+ +DG T+ D I F N ++ + +ISI +
Sbjct: 192 KRNIHSRFIAAIRLEDGHKTSSQDEIALAFVNHFRNLFSAHELTQTPSISICNRGPKVPI 251
Query: 154 DDF--LVHDYSVDDIKNALFDIGDDKSPRPNGYTFTFFKK 267
D F L+ S ++ N + + ++K+P P+G+ FFKK
Sbjct: 252 DCFAALLCPTSKQEVWNVISVMDNNKAPGPDGFNVLFFKK 291
>gb|AAC78274.1| putative reverse transcriptase [Arabidopsis thaliana]
Length = 543
Score = 98.6 bits (244), Expect(3) = 2e-36
Identities = 48/132 (36%), Positives = 75/132 (56%)
Frame = +2
Query: 269 WNLVGIDFCGAIMEFFSIGMLLKQTNHVIVSLIPKKKHSKSVGDFRPISCCNVFYKVITK 448
W +V F AI EFF G LLK N ++LIPK + + FRP++CC YKVIT+
Sbjct: 26 WPIVKESFIAAIKEFFLTGHLLKGFNATAITLIPKVPGADQLNLFRPVACCTTIYKVITR 85
Query: 449 LLASRLGKVLPTFIDDVEPAFVKGRSMVEDIHLAQDFMRGYTRKRTSPMFTLKIDLWKIY 628
L++ RL + + + F+KGR + E++ LA + + + + + L++DL K Y
Sbjct: 86 LISKRLNLFIDQAVQSNQVGFIKGRLLCENVLLASELVDNFQAEGDTSRGCLQVDLTKAY 145
Query: 629 DTMSWEFLQQVL 664
D ++WEFL +L
Sbjct: 146 DNVNWEFLINIL 157
Score = 80.1 bits (196), Expect(3) = 2e-36
Identities = 59/227 (25%), Positives = 99/227 (43%), Gaps = 27/227 (11%)
Frame = +3
Query: 690 FIIWMMACVTAPPFSLGVNGEN---FXG--------------------VSFKKFEESNVG 800
FI W+ C++ P +S+ NGE F G + + + V
Sbjct: 166 FINWIWVCISTPSYSIAYNGELIGFFVGKKGIRQGDPMSSHLFVLVMDILARSLDLGAVE 225
Query: 801 R*FQLPS*M*KLKVIHRVFADDLMIFTRGDYLSVKIVCDALSMLGHVSGLKANCLKSNIL 980
F L + H FADD+++F G S+ + D L + SGL N K+ +L
Sbjct: 226 GRFVLHPKCLAPMITHLSFADDILVFCDGSLSSLVAILDILDVFKKGSGLGINLQKTALL 285
Query: 981 LASMDDLEKSRIFT----LIRFPCGFSCLGISLAQIYFKVADFSPLLDKVSNTLQSWVRL 1148
L + E++RI + + LG+ L K D+ PL+D++++ SW
Sbjct: 286 LDG-GNFERNRIMAASLGVSQGSLPVRYLGVPLMSQKMKKHDYQPLVDRINSRFTSWTAR 344
Query: 1149 DISYAGRLEVVRTVVRGIESFWLGILPIFVTVLEKITSFCRRFLSDG 1289
+S+AGRL+++++V+ +FW I + L K+ C FL G
Sbjct: 345 HLSFAGRLQLLKSVIYSTINFWASIFILPNQCLHKLEQMCNAFLWSG 391
Score = 23.5 bits (49), Expect(3) = 2e-36
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +1
Query: 199 ALFDIGDDKSPRPNGYTFTFF 261
ALF + +K+P P+G+ FF
Sbjct: 2 ALFSMPRNKAPGPDGFPVEFF 22
>ref|XP_006576082.1| PREDICTED: uncharacterized protein LOC102659506 [Glycine max]
Length = 964
Score = 137 bits (344), Expect(2) = 7e-34
Identities = 63/126 (50%), Positives = 86/126 (68%)
Frame = +2
Query: 263 RKWNLVGIDFCGAIMEFFSIGMLLKQTNHVIVSLIPKKKHSKSVGDFRPISCCNVFYKVI 442
+ WN+VG D A+ EFF+ G +LKQ NH I+ LIPK + V FRPISCCN+ YK++
Sbjct: 839 KAWNIVGDDIFAAVNEFFTTGKILKQLNHAIIVLIPKHDQASQVNHFRPISCCNLLYKIV 898
Query: 443 TKLLASRLGKVLPTFIDDVEPAFVKGRSMVEDIHLAQDFMRGYTRKRTSPMFTLKIDLWK 622
+K+LA+R+ VL T I + + AF+K R M+++I L Q+ +R Y RKR SP LKIDL K
Sbjct: 899 SKILANRIAPVLETIIGETQTAFIKNRKMMDNIFLVQEILRKYARKRPSPRCLLKIDLHK 958
Query: 623 IYDTMS 640
YD +S
Sbjct: 959 AYDFIS 964
Score = 36.2 bits (82), Expect(2) = 7e-34
Identities = 26/100 (26%), Positives = 45/100 (45%), Gaps = 12/100 (12%)
Frame = +1
Query: 4 KRNVKKKFVAALIKDDGTTTTFCD-IQELFFNFYKEF-----------LGITDEAISIDE 147
KRN +F+AA+ +DG T+ D I F N ++ F + I + +
Sbjct: 740 KRNKHSRFIAAIRLEDGHNTSSQDEIALAFVNHFRNFFSAHELTQTPSISICNRGPKVPT 799
Query: 148 TVDDFLVHDYSVDDIKNALFDIGDDKSPRPNGYTFTFFKK 267
L+ S + N + + ++K+P P+G+ FFKK
Sbjct: 800 DCFAALLCPTSKQKVWNIISVMANNKAPGPDGFNVLFFKK 839
>dbj|BAF00918.1| putative reverse transcriptase [Arabidopsis thaliana]
Length = 910
Score = 87.8 bits (216), Expect(4) = 3e-32
Identities = 43/132 (32%), Positives = 72/132 (54%)
Frame = +2
Query: 269 WNLVGIDFCGAIMEFFSIGMLLKQTNHVIVSLIPKKKHSKSVGDFRPISCCNVFYKVITK 448
W +V AI EFF G L + N ++LIPK + + FRP++CC YKVIT+
Sbjct: 479 WAIVKSSVVAAIREFFISGNLPRGFNATAITLIPKVTGADRLTQFRPVACCTTIYKVITR 538
Query: 449 LLASRLGKVLPTFIDDVEPAFVKGRSMVEDIHLAQDFMRGYTRKRTSPMFTLKIDLWKIY 628
+++ RL + + + F+KGR + E++ LA + + + + L++D+ K Y
Sbjct: 539 IISRRLKLFIDQAVQANQVGFIKGRLLCENVLLASELVDNFEADGETTRGCLQVDISKAY 598
Query: 629 DTMSWEFLQQVL 664
D ++WEFL +L
Sbjct: 599 DNVNWEFLINIL 610
Score = 69.7 bits (169), Expect(4) = 3e-32
Identities = 57/228 (25%), Positives = 96/228 (42%), Gaps = 28/228 (12%)
Frame = +3
Query: 690 FIIWMMACVTAPPFSLGVNGEN---FXG--------------------VSFKKFEESNVG 800
FI W+ C+++ +S+ NGE F G V K + +
Sbjct: 619 FIHWIWVCISSASYSIAFNGELIGFFQGKKGIRQGDPMSSHLFVLVMDVLSKSLDLGALN 678
Query: 801 R*FQLPS*M*KLKVIHRVFADDLMIFTRGDYLSVKIVCDALSMLGHVSGLKANCLKSNIL 980
F L + H FADD+++F+ G S+ + L SGL N K+ +L
Sbjct: 679 GLFNLHPNCLAPIITHLSFADDVLVFSDGAASSIAGILTILDDFRQGSGLGINREKTELL 738
Query: 981 L-----ASMDDLEKSRIFTLIRFPCGFSCLGISLAQIYFKVADFSPLLDKVSNTLQSWVR 1145
L A L + T P + LG+ L + D+ PL+D++++ SW
Sbjct: 739 LDGGNFARNRSLADNLGITHGSLPVRY--LGVPLMSQKMRRQDYQPLVDRINSRFTSWTA 796
Query: 1146 LDISYAGRLEVVRTVVRGIESFWLGILPIFVTVLEKITSFCRRFLSDG 1289
+S+AGRL+++++V+ +FW + L+K+ C FL G
Sbjct: 797 RHLSFAGRLQLLKSVIYSTINFWASVFIFPNQCLQKLEQMCNAFLWSG 844
Score = 29.6 bits (65), Expect(4) = 3e-32
Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 15/87 (17%)
Frame = +1
Query: 46 DDGTTTTFCD-IQELFFNFYKEFLGITDEAIS----------IDETVDDFLVHDY----S 180
DDG D I+ + +Y LGI E ++ + D FL S
Sbjct: 389 DDGFRVENVDQIKGMLIAYYSHLLGIPSENVTPFSVEKIKGLLPFRCDSFLASQLTTIPS 448
Query: 181 VDDIKNALFDIGDDKSPRPNGYTFTFF 261
++I LF + +K+P P+G+ FF
Sbjct: 449 EEEITQVLFSMPRNKAPGPDGFPVEFF 475
Score = 21.2 bits (43), Expect(4) = 3e-32
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +2
Query: 1316 LCLDKEHGGLGLR 1354
+C KE GGLGL+
Sbjct: 859 VCSPKEAGGLGLK 871
>gb|EMJ15226.1| hypothetical protein PRUPE_ppa016677mg [Prunus persica]
Length = 1421
Score = 88.2 bits (217), Expect(3) = 6e-32
Identities = 49/132 (37%), Positives = 73/132 (55%)
Frame = +2
Query: 269 WNLVGIDFCGAIMEFFSIGMLLKQTNHVIVSLIPKKKHSKSVGDFRPISCCNVFYKVITK 448
W +V D + +FF G++ TN + LIPKK +S V D+RPIS YKVI+K
Sbjct: 736 WEVVKGDLMKVMQDFFQSGIVNGVTNETFICLIPKKANSVKVTDYRPISLVTSLYKVISK 795
Query: 449 LLASRLGKVLPTFIDDVEPAFVKGRSMVEDIHLAQDFMRGYTRKRTSPMFTLKIDLWKIY 628
+LASRL +VL I + AFV+ R +++ + +A + + RK+ KID K Y
Sbjct: 796 VLASRLREVLGNTISQSQGAFVQKRQILDAVLVANEVVE-EVRKQKRKGLVFKIDFEKAY 854
Query: 629 DTMSWEFLQQVL 664
D + W F+ V+
Sbjct: 855 DHVEWNFVDDVM 866
Score = 57.4 bits (137), Expect(3) = 6e-32
Identities = 50/202 (24%), Positives = 88/202 (43%), Gaps = 5/202 (2%)
Frame = +3
Query: 699 WMMACVTAPPFSLGVNGENFXGVSFKKFEESNVGR*FQLPS*M*KLKVIHRVFADDLMIF 878
W++ C+ + FS+ +NG+ F+ G ++V H FADD +
Sbjct: 878 WIIGCLESVNFSIMINGKPRG--KFRASRGLRQGDPLSPFLFTLVMEVSHLQFADDTIFL 935
Query: 879 TRGDYLSVKIVCDALSMLGHVSGLKANCLKSNILLASMDDLEKSRIFTLIRFPCGFSC-- 1052
G + L + VSG+K N KS IL + + + + C C
Sbjct: 936 LDGKEEYWLNLLQLLKLFCDVSGMKINKAKSCILGINFSTEVLNNMAG--SWGCEVGCWP 993
Query: 1053 ---LGISLAQIYFKVADFSPLLDKVSNTLQSWVRLDISYAGRLEVVRTVVRGIESFWLGI 1223
LG+ L + ++P+++KV LQ W R +S GRL +++ V+ I S+++ +
Sbjct: 994 MIYLGLPLGGNPRALNFWNPVMEKVEKRLQKWKRACLSKGGRLTLIQAVLSSIPSYYMSL 1053
Query: 1224 LPIFVTVLEKITSFCRRFLSDG 1289
+ + V K+ R FL +G
Sbjct: 1054 FKMPIGVAAKVEQLMRNFLWEG 1075
Score = 41.6 bits (96), Expect(3) = 6e-32
Identities = 24/93 (25%), Positives = 49/93 (52%), Gaps = 10/93 (10%)
Frame = +1
Query: 16 KKKFVAAL-IKDDGTTTTFCDIQELFFNFYKEF------LGITDEAIS---IDETVDDFL 165
K+ ++ L ++D G +I+ F+K +G E ++ I + D+L
Sbjct: 641 KRNYIEKLEVEDLGVIEVDANIEREVIRFFKGLYSRNKNVGWGVEGLNWCPISQVEADWL 700
Query: 166 VHDYSVDDIKNALFDIGDDKSPRPNGYTFTFFK 264
+ +++++ A+FD G DKSP P+G++ +FF+
Sbjct: 701 ERPFDLEEVQKAVFDCGKDKSPGPDGFSMSFFQ 733
>gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]
Length = 872
Score = 122 bits (305), Expect(2) = 1e-31
Identities = 62/157 (39%), Positives = 99/157 (63%), Gaps = 1/157 (0%)
Frame = +2
Query: 269 WNLVGIDFCGAIMEFFSIGMLLKQTNHVIVSLIPKKKHSKSVGDFRPISCCNVFYKVITK 448
W+++G +F + FF G L K N +I++LIPKK +K + D+RPISCCNV YKVI+K
Sbjct: 132 WDIIGQEFTLPVQSFFQKGFLPKGINSIILALIPKKLAAKEMRDYRPISCCNVLYKVISK 191
Query: 449 LLASRLGKVLPTFIDDVEPAFVKGRSMVEDIHLAQDFMRGYTRKRTSPMFTLKIDLWKIY 628
++A+RL +LP FI + + AFVK R ++E++ LA + ++ Y + S +KID+ K +
Sbjct: 192 IIANRLKLLLPRFIAENQSAFVKDRLLIENLLLATELVKDYHKDSISARCAIKIDISKAF 251
Query: 629 DTMSWEFLQQVLHLP*ISGK-VHYLDDGMCYCTSVFS 736
D++ W FL L S +H+++ +C T+ FS
Sbjct: 252 DSVQWSFLTNTLVAMNFSPTFIHWIN--LCITTASFS 286
Score = 43.9 bits (102), Expect(2) = 1e-31
Identities = 29/96 (30%), Positives = 42/96 (43%), Gaps = 14/96 (14%)
Frame = +1
Query: 19 KKFVAALIKDDGTTTTFCDIQELFFNFYKEFLGITDE---AISIDETVD----------- 156
K + + DG DI F+KEFL + E + + E D
Sbjct: 34 KNMIKEIYCTDGRVVQGDDIMVEAEKFFKEFLQLIPEDFVGVEVRELQDLLQFRCTNSDN 93
Query: 157 DFLVHDYSVDDIKNALFDIGDDKSPRPNGYTFTFFK 264
+ L + S ++IK LF + DKSP P+GYT F+K
Sbjct: 94 EMLTREVSSEEIKTVLFSMPKDKSPGPDGYTSEFYK 129
Score = 80.1 bits (196), Expect(2) = 3e-14
Identities = 59/233 (25%), Positives = 99/233 (42%), Gaps = 26/233 (11%)
Frame = +3
Query: 669 SLKFLEKFIIWMMACVTAPPFSLGVNGENFX-----------------------GVSFKK 779
++ F FI W+ C+T FS+ VNG+ V K
Sbjct: 265 AMNFSPTFIHWINLCITTASFSVQVNGDLVGYFQSKRGLRQGCSLSPYLFVICMDVLSKM 324
Query: 780 FEESNVGR*FQLPS*M*KLKVIHRVFADDLMIFTRGDYLSVKIVCDALSMLGHVSGLKAN 959
+++ R F +L + H FADDLM+ + G S++ + + SGL+ +
Sbjct: 325 LDKAAGVRKFGFHPKCQRLGLTHLSFADDLMVLSDGKTRSIEGILEVFDEFCKRSGLRIS 384
Query: 960 CLKSNILLASMDDLEKSRIFTLIRFPCG---FSCLGISLAQIYFKVADFSPLLDKVSNTL 1130
KS + +A + + K I F G LG+ L AD+SPLL+++ +
Sbjct: 385 LEKSTLYMAGVSPIIKQEIAAKFLFDVGQLPVRYLGLPLVTKRLTSADYSPLLEQIKKRI 444
Query: 1131 QSWVRLDISYAGRLEVVRTVVRGIESFWLGILPIFVTVLEKITSFCRRFLSDG 1289
+W S+AGR ++++V+ I +FWL + + +I C FL G
Sbjct: 445 ATWTFRFFSFAGRFNLIKSVLWSICNFWLAAFRLPRQCIREIDKLCSSFLWSG 497
Score = 27.3 bits (59), Expect(2) = 3e-14
Identities = 17/74 (22%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
Frame = +2
Query: 1316 LCLDKEHGGLGLRPGTRCR----IDALLSIKCHGMFMQRRWIDHFYMKNFTIWDLNLKKD 1483
+C K GGLGLR + + I + + +W+ + ++ +IW L
Sbjct: 512 VCKPKAEGGLGLRNLKEANDVSCLKLVWRIISNSNSLWTKWVAEYLIRKKSIWSLKQSTS 571
Query: 1484 FSLFI-KRLLSIQD 1522
+I +++L I+D
Sbjct: 572 MGSWIWRKILKIRD 585