BLASTX nr result
ID: Catharanthus22_contig00001755
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Catharanthus22_contig00001755
(1318 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006347020.1| PREDICTED: 30S ribosomal protein S5, chlorop... 328 4e-87
ref|XP_004232896.1| PREDICTED: 30S ribosomal protein S5, chlorop... 326 1e-86
ref|XP_002509457.1| 30S ribosomal protein S5, putative [Ricinus ... 323 1e-85
ref|XP_002305129.1| hypothetical protein POPTR_0004s04550g [Popu... 321 4e-85
ref|XP_004134699.1| PREDICTED: 30S ribosomal protein S5, chlorop... 319 2e-84
gb|EOY28207.1| Ribosomal protein S5 family protein [Theobroma ca... 310 7e-82
ref|XP_003529335.1| PREDICTED: 30S ribosomal protein S5, chlorop... 307 6e-81
ref|XP_003542738.1| PREDICTED: 30S ribosomal protein S5, chlorop... 305 9e-81
ref|XP_004294008.1| PREDICTED: 30S ribosomal protein S5, chlorop... 306 1e-80
gb|EMJ12857.1| hypothetical protein PRUPE_ppa008978mg [Prunus pe... 303 1e-79
sp|Q9ST69.1|RR5_SPIOL RecName: Full=30S ribosomal protein S5, ch... 295 2e-77
gb|ESW31331.1| hypothetical protein PHAVU_002G229700g [Phaseolus... 294 5e-77
gb|AGV54467.1| 30S ribosomal protein S5 [Phaseolus vulgaris] 291 4e-76
ref|NP_180936.1| 30S ribosomal protein S5 [Arabidopsis thaliana]... 291 4e-76
ref|XP_006849392.1| hypothetical protein AMTR_s00160p00027870 [A... 291 5e-76
gb|EXC18094.1| 30S ribosomal protein S5 [Morus notabilis] 288 3e-75
ref|XP_006449367.1| hypothetical protein CICLE_v10016057mg [Citr... 288 3e-75
gb|EPS57449.1| hypothetical protein M569_17368, partial [Genlise... 288 5e-75
ref|XP_004505073.1| PREDICTED: LOW QUALITY PROTEIN: 30S ribosoma... 288 5e-75
ref|XP_006467770.1| PREDICTED: 30S ribosomal protein S5, chlorop... 287 6e-75
>ref|XP_006347020.1| PREDICTED: 30S ribosomal protein S5, chloroplastic-like [Solanum
tuberosum]
Length = 305
Score = 328 bits (840), Expect = 4e-87
Identities = 170/253 (67%), Positives = 188/253 (74%)
Frame = +2
Query: 254 KANSTDIDTTFFDNADPEAISTFDXXXXXXXXXXXXSFDEGPLESEDEIAKAYEEIYGPA 433
K NST +TTFFDN DPE IST+D SFD+GP+ESE+EIAKAYEE+YG A
Sbjct: 54 KPNSTTAETTFFDNTDPEEISTYDPPERPEDFIEPASFDDGPMESEEEIAKAYEELYGAA 113
Query: 434 YSGETFLGNDIYVMDSKVKKTSGLGSKNKREKVKDGFEEXXXXXXXXXXXXXXXXXLHFR 613
YSGETFLGNDIY MDSKVKKT+ G K K+EK KDGF+E LHFR
Sbjct: 114 YSGETFLGNDIYAMDSKVKKTTSFG-KTKKEKAKDGFDERVVQVRRVTKVVKGGKQLHFR 172
Query: 614 AIXXXXXXXXXXXXXXXXXXXXXXXXQKSAVNARRNIVTVPMTKYLTFPHRSDGDYGAAK 793
A+ QKSAVNARRN++TVPMTKYLTFPHRSDGD+GAA+
Sbjct: 173 AVVVVGDKKGQVGVGVGKAKEVIAAVQKSAVNARRNLITVPMTKYLTFPHRSDGDFGAAR 232
Query: 794 VMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMRQFSEV 973
VMLRPA+PGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQ+MRQFSEV
Sbjct: 233 VMLRPAAPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQQMRQFSEV 292
Query: 974 AKDRGIPMEELWK 1012
A++RGIPMEELWK
Sbjct: 293 AQERGIPMEELWK 305
>ref|XP_004232896.1| PREDICTED: 30S ribosomal protein S5, chloroplastic-like [Solanum
lycopersicum]
Length = 305
Score = 326 bits (836), Expect = 1e-86
Identities = 169/253 (66%), Positives = 188/253 (74%)
Frame = +2
Query: 254 KANSTDIDTTFFDNADPEAISTFDXXXXXXXXXXXXSFDEGPLESEDEIAKAYEEIYGPA 433
K NST +TTFFDN DPE IST+D SFD+GP+ESE+EIAKAYEE+YG A
Sbjct: 54 KPNSTTAETTFFDNTDPEEISTYDPPERPEDFIEPASFDDGPMESEEEIAKAYEELYGAA 113
Query: 434 YSGETFLGNDIYVMDSKVKKTSGLGSKNKREKVKDGFEEXXXXXXXXXXXXXXXXXLHFR 613
YSGETFLGNDIY MDSKVKKT+ G K K+EK KDGF+E LHFR
Sbjct: 114 YSGETFLGNDIYAMDSKVKKTTSFG-KTKKEKAKDGFDERVVQVRRVTKVVKGGKQLHFR 172
Query: 614 AIXXXXXXXXXXXXXXXXXXXXXXXXQKSAVNARRNIVTVPMTKYLTFPHRSDGDYGAAK 793
A+ QKSAVNARRN++TVPMTKYLTFPHRS+GD+GAA+
Sbjct: 173 AVVVVGDKKGQVGVGVGKAKEVIAAVQKSAVNARRNLITVPMTKYLTFPHRSEGDFGAAR 232
Query: 794 VMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMRQFSEV 973
VMLRPA+PGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQ+MRQFSEV
Sbjct: 233 VMLRPAAPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQQMRQFSEV 292
Query: 974 AKDRGIPMEELWK 1012
A++RGIPMEELWK
Sbjct: 293 AQERGIPMEELWK 305
>ref|XP_002509457.1| 30S ribosomal protein S5, putative [Ricinus communis]
gi|223549356|gb|EEF50844.1| 30S ribosomal protein S5,
putative [Ricinus communis]
Length = 309
Score = 323 bits (828), Expect = 1e-85
Identities = 167/252 (66%), Positives = 186/252 (73%)
Frame = +2
Query: 257 ANSTDIDTTFFDNADPEAISTFDXXXXXXXXXXXXSFDEGPLESEDEIAKAYEEIYGPAY 436
A+S+DIDTTFFDN +PE FD SFDE P+E+E+EIA AYE++YG Y
Sbjct: 58 ASSSDIDTTFFDNLNPEDDIVFDPPTPPEDFVPPPSFDEEPMETEEEIAAAYEDLYGAGY 117
Query: 437 SGETFLGNDIYVMDSKVKKTSGLGSKNKREKVKDGFEEXXXXXXXXXXXXXXXXXLHFRA 616
SG ++LGND+YVMDSKVKKT+G GSK KREK++DGFEE LHFRA
Sbjct: 118 SGVSYLGNDVYVMDSKVKKTTGFGSKGKREKIRDGFEERVVQVRRVTKVVKGGKQLHFRA 177
Query: 617 IXXXXXXXXXXXXXXXXXXXXXXXXQKSAVNARRNIVTVPMTKYLTFPHRSDGDYGAAKV 796
I QKSAVNARRNI+TVPMTKYLTFPHRSDGDYGAAKV
Sbjct: 178 IVVVGDKQGQVGVGVGKAKEVIAAVQKSAVNARRNIITVPMTKYLTFPHRSDGDYGAAKV 237
Query: 797 MLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMRQFSEVA 976
MLRPASPGTGVIAGGAVRIVLEMAGVENALGKQ+GS NALNNARATVVAVQKMRQFS+VA
Sbjct: 238 MLRPASPGTGVIAGGAVRIVLEMAGVENALGKQIGSKNALNNARATVVAVQKMRQFSDVA 297
Query: 977 KDRGIPMEELWK 1012
++RGIPMEELWK
Sbjct: 298 RERGIPMEELWK 309
>ref|XP_002305129.1| hypothetical protein POPTR_0004s04550g [Populus trichocarpa]
gi|118487850|gb|ABK95748.1| unknown [Populus trichocarpa]
gi|222848093|gb|EEE85640.1| hypothetical protein
POPTR_0004s04550g [Populus trichocarpa]
Length = 311
Score = 321 bits (823), Expect = 4e-85
Identities = 167/253 (66%), Positives = 187/253 (73%)
Frame = +2
Query: 254 KANSTDIDTTFFDNADPEAISTFDXXXXXXXXXXXXSFDEGPLESEDEIAKAYEEIYGPA 433
KANS+DIDT+FFDN +PE +D SFDEGP+E+E+EIA AYEE+YGPA
Sbjct: 59 KANSSDIDTSFFDNLNPEEEFVYDPPTPPEDYIPPPSFDEGPIETEEEIAAAYEELYGPA 118
Query: 434 YSGETFLGNDIYVMDSKVKKTSGLGSKNKREKVKDGFEEXXXXXXXXXXXXXXXXXLHFR 613
YSG + LG DIYVMDSKVKKTSG GS+ K+EK+KDGF+E LHFR
Sbjct: 119 YSGVSVLGKDIYVMDSKVKKTSGWGSRVKKEKIKDGFDERVVQVRRVTKVVKGGKQLHFR 178
Query: 614 AIXXXXXXXXXXXXXXXXXXXXXXXXQKSAVNARRNIVTVPMTKYLTFPHRSDGDYGAAK 793
A+ QKSA+NARRNI+TVPMTKYLTFPHRS+GD+GAAK
Sbjct: 179 AVVIVGDKQGRVGVGVGKAKEVIVAVQKSALNARRNIITVPMTKYLTFPHRSEGDFGAAK 238
Query: 794 VMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMRQFSEV 973
VMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQL S NALNNARATVVAVQKMRQFSEV
Sbjct: 239 VMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLRSKNALNNARATVVAVQKMRQFSEV 298
Query: 974 AKDRGIPMEELWK 1012
A++RGIPMEELWK
Sbjct: 299 ARERGIPMEELWK 311
>ref|XP_004134699.1| PREDICTED: 30S ribosomal protein S5, chloroplastic-like [Cucumis
sativus] gi|449479289|ref|XP_004155560.1| PREDICTED: 30S
ribosomal protein S5, chloroplastic-like [Cucumis
sativus]
Length = 307
Score = 319 bits (817), Expect = 2e-84
Identities = 166/253 (65%), Positives = 184/253 (72%)
Frame = +2
Query: 254 KANSTDIDTTFFDNADPEAISTFDXXXXXXXXXXXXSFDEGPLESEDEIAKAYEEIYGPA 433
+A S+DIDTTFFDN +P+ +D SFDEGP+E+E+EIA YEEIYGPA
Sbjct: 55 RAKSSDIDTTFFDNVNPQEDIVYDPPEVPEGFVPPPSFDEGPIETEEEIAAGYEEIYGPA 114
Query: 434 YSGETFLGNDIYVMDSKVKKTSGLGSKNKREKVKDGFEEXXXXXXXXXXXXXXXXXLHFR 613
YSG + LGNDIYVMDSKVKK G GSK K++K +DGF+E LHFR
Sbjct: 115 YSGVSVLGNDIYVMDSKVKKAGGFGSKAKKDKPRDGFDERVVQVRRVTKVVKGGKQLHFR 174
Query: 614 AIXXXXXXXXXXXXXXXXXXXXXXXXQKSAVNARRNIVTVPMTKYLTFPHRSDGDYGAAK 793
AI QKSAVNARRNIVTVPMTKYLTFPHRS+GDYGAAK
Sbjct: 175 AIVVVGDKQGQVGVGVGKAKEVITAVQKSAVNARRNIVTVPMTKYLTFPHRSEGDYGAAK 234
Query: 794 VMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMRQFSEV 973
VMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKM+QF +V
Sbjct: 235 VMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQFRDV 294
Query: 974 AKDRGIPMEELWK 1012
A++RGIPMEELWK
Sbjct: 295 AQERGIPMEELWK 307
>gb|EOY28207.1| Ribosomal protein S5 family protein [Theobroma cacao]
Length = 303
Score = 310 bits (795), Expect = 7e-82
Identities = 164/252 (65%), Positives = 183/252 (72%)
Frame = +2
Query: 257 ANSTDIDTTFFDNADPEAISTFDXXXXXXXXXXXXSFDEGPLESEDEIAKAYEEIYGPAY 436
A ++DIDT+FFDN +PE FD SFD+GP E+EDEIA AYEE+YGPAY
Sbjct: 53 AKASDIDTSFFDNVNPEEDVVFDPPTPPEGFTPPPSFDDGPDETEDEIAAAYEELYGPAY 112
Query: 437 SGETFLGNDIYVMDSKVKKTSGLGSKNKREKVKDGFEEXXXXXXXXXXXXXXXXXLHFRA 616
SG + LGND+YVMDSKVKKTS G K K+EKV+DGFEE LHFRA
Sbjct: 113 SGFSVLGNDVYVMDSKVKKTSAFG-KVKKEKVRDGFEERVVQVRRVTKVVKGGKQLHFRA 171
Query: 617 IXXXXXXXXXXXXXXXXXXXXXXXXQKSAVNARRNIVTVPMTKYLTFPHRSDGDYGAAKV 796
I QKSAVNARRN++TVPMTKYLTFPHRS+GD+GAAKV
Sbjct: 172 IVVVGDKQGQVGVGVGKAKEVIAAVQKSAVNARRNLITVPMTKYLTFPHRSEGDFGAAKV 231
Query: 797 MLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMRQFSEVA 976
MLRPASPGTGVIAGGAVRIVLEMAGVENALGKQ+GS NALNNARATVVAVQKMRQF +VA
Sbjct: 232 MLRPASPGTGVIAGGAVRIVLEMAGVENALGKQIGSKNALNNARATVVAVQKMRQFRDVA 291
Query: 977 KDRGIPMEELWK 1012
++RGIPMEELWK
Sbjct: 292 QERGIPMEELWK 303
>ref|XP_003529335.1| PREDICTED: 30S ribosomal protein S5, chloroplastic-like [Glycine max]
Length = 300
Score = 307 bits (787), Expect = 6e-81
Identities = 160/250 (64%), Positives = 180/250 (72%)
Frame = +2
Query: 263 STDIDTTFFDNADPEAISTFDXXXXXXXXXXXXSFDEGPLESEDEIAKAYEEIYGPAYSG 442
S DIDT+FFDN +P+ TF+ SFD+GPLE+EDEIA AYEE+YGP YSG
Sbjct: 51 SDDIDTSFFDNINPQDDITFNPPEPPEGFVAPPSFDDGPLETEDEIAAAYEELYGPGYSG 110
Query: 443 ETFLGNDIYVMDSKVKKTSGLGSKNKREKVKDGFEEXXXXXXXXXXXXXXXXXLHFRAIX 622
+ LGND+YVMD+KVKK +G GS K+EKV+DGFEE L FRA+
Sbjct: 111 VSVLGNDVYVMDAKVKKETGFGSGAKKEKVRDGFEERVVQVRRVTKVVKGGKQLRFRAVV 170
Query: 623 XXXXXXXXXXXXXXXXXXXXXXXQKSAVNARRNIVTVPMTKYLTFPHRSDGDYGAAKVML 802
QKSAVNARRNI+ VPMTKY TFPHR+DGDYGAAKVML
Sbjct: 171 VVGDKKGSVGVGVGKAKEVIAAVQKSAVNARRNIIKVPMTKYSTFPHRADGDYGAAKVML 230
Query: 803 RPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMRQFSEVAKD 982
RPASPGTGVIAGG+VRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKM+QF EVA++
Sbjct: 231 RPASPGTGVIAGGSVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQFREVAEE 290
Query: 983 RGIPMEELWK 1012
RGIPMEELWK
Sbjct: 291 RGIPMEELWK 300
>ref|XP_003542738.1| PREDICTED: 30S ribosomal protein S5, chloroplastic-like [Glycine max]
Length = 316
Score = 305 bits (780), Expect(2) = 9e-81
Identities = 158/250 (63%), Positives = 179/250 (71%)
Frame = +2
Query: 263 STDIDTTFFDNADPEAISTFDXXXXXXXXXXXXSFDEGPLESEDEIAKAYEEIYGPAYSG 442
S DIDT+FFDN +P+ TF+ SFD+GPLE+EDEIA AYEE+YGP YSG
Sbjct: 67 SDDIDTSFFDNINPQDDITFNPPEPPEGFVAPPSFDDGPLETEDEIAAAYEELYGPGYSG 126
Query: 443 ETFLGNDIYVMDSKVKKTSGLGSKNKREKVKDGFEEXXXXXXXXXXXXXXXXXLHFRAIX 622
+ LGND+YVMD+KVKK +G GS K+EKV+DGFEE L FRA+
Sbjct: 127 VSVLGNDVYVMDAKVKKETGFGSGAKKEKVRDGFEERVVQVRRVTKVVKGGKQLRFRAVV 186
Query: 623 XXXXXXXXXXXXXXXXXXXXXXXQKSAVNARRNIVTVPMTKYLTFPHRSDGDYGAAKVML 802
QKSAVNARRNI+ VPMTKY TFPHR+DGDYGAAKVML
Sbjct: 187 VVGDKKGQVGVGVGKAKEVIAAVQKSAVNARRNIIKVPMTKYSTFPHRADGDYGAAKVML 246
Query: 803 RPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMRQFSEVAKD 982
RPASPGTGVIAGG+VRIVLEMAGV+NALGKQLGSNNALNNARATV AVQKM+QF EVA++
Sbjct: 247 RPASPGTGVIAGGSVRIVLEMAGVDNALGKQLGSNNALNNARATVAAVQKMKQFREVAEE 306
Query: 983 RGIPMEELWK 1012
RGIPMEELWK
Sbjct: 307 RGIPMEELWK 316
Score = 24.3 bits (51), Expect(2) = 9e-81
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +3
Query: 153 SLISSPSHKPRRPFL*PLKS 212
SL+ PSH+P +P LKS
Sbjct: 45 SLLPPPSHQPSKPLFLTLKS 64
>ref|XP_004294008.1| PREDICTED: 30S ribosomal protein S5, chloroplastic-like [Fragaria
vesca subsp. vesca]
Length = 314
Score = 306 bits (785), Expect = 1e-80
Identities = 165/252 (65%), Positives = 178/252 (70%)
Frame = +2
Query: 257 ANSTDIDTTFFDNADPEAISTFDXXXXXXXXXXXXSFDEGPLESEDEIAKAYEEIYGPAY 436
A +I+TTFFDN DPE + F+ SFDE LE+EDEIA AYEE+YGPAY
Sbjct: 64 AEQPEIETTFFDNDDPEYEAVFEPPEAPEGFVPPPSFDEESLETEDEIAAAYEELYGPAY 123
Query: 437 SGETFLGNDIYVMDSKVKKTSGLGSKNKREKVKDGFEEXXXXXXXXXXXXXXXXXLHFRA 616
SG T LGNDIYVMD+KVKK G K K+EK++DGFEE LHFRA
Sbjct: 124 SGMTVLGNDIYVMDAKVKKLGAFG-KLKKEKIRDGFEERVVQVRRVTKVVKGGKQLHFRA 182
Query: 617 IXXXXXXXXXXXXXXXXXXXXXXXXQKSAVNARRNIVTVPMTKYLTFPHRSDGDYGAAKV 796
I QKSAVNARRNI+TVPMTKYLTFPHRS+GDYGAAKV
Sbjct: 183 IVVVGDKQGNVGVGVGKAKEVIGAVQKSAVNARRNIITVPMTKYLTFPHRSEGDYGAAKV 242
Query: 797 MLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMRQFSEVA 976
MLRPASPGTGVIAGG+VRIVLEMAGVENALGKQLGS NALNNARATVVAVQKMRQF EVA
Sbjct: 243 MLRPASPGTGVIAGGSVRIVLEMAGVENALGKQLGSKNALNNARATVVAVQKMRQFREVA 302
Query: 977 KDRGIPMEELWK 1012
DRGIPMEELWK
Sbjct: 303 LDRGIPMEELWK 314
>gb|EMJ12857.1| hypothetical protein PRUPE_ppa008978mg [Prunus persica]
Length = 312
Score = 303 bits (775), Expect = 1e-79
Identities = 159/252 (63%), Positives = 179/252 (71%)
Frame = +2
Query: 257 ANSTDIDTTFFDNADPEAISTFDXXXXXXXXXXXXSFDEGPLESEDEIAKAYEEIYGPAY 436
A + D++T+FFDN DPE F+ SFD+ E+EDEIA AYEE+YGPAY
Sbjct: 62 AAAADVETSFFDNEDPEFDGVFEPPEVPEGFVPPPSFDDESSETEDEIAAAYEELYGPAY 121
Query: 437 SGETFLGNDIYVMDSKVKKTSGLGSKNKREKVKDGFEEXXXXXXXXXXXXXXXXXLHFRA 616
SGE+ LGNDIYVMDS VKKT G K K+EK++DGFEE LHFRA
Sbjct: 122 SGESVLGNDIYVMDSNVKKTGAFG-KLKKEKIRDGFEERVVQVRRVTKVVKGGKQLHFRA 180
Query: 617 IXXXXXXXXXXXXXXXXXXXXXXXXQKSAVNARRNIVTVPMTKYLTFPHRSDGDYGAAKV 796
I QKSAVNARRNI++VPMTKYLTFPHRS+GDYGAAKV
Sbjct: 181 IVVVGDKQGQVGVGVGKAKEVIGAVQKSAVNARRNIISVPMTKYLTFPHRSEGDYGAAKV 240
Query: 797 MLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMRQFSEVA 976
MLRPASPGTGVIAGG+VRIVLEMAGVENALGKQLGS NALNNARATVV +QKMRQFS+VA
Sbjct: 241 MLRPASPGTGVIAGGSVRIVLEMAGVENALGKQLGSKNALNNARATVVGIQKMRQFSDVA 300
Query: 977 KDRGIPMEELWK 1012
++RGIPMEELWK
Sbjct: 301 RERGIPMEELWK 312
>sp|Q9ST69.1|RR5_SPIOL RecName: Full=30S ribosomal protein S5, chloroplastic; Flags:
Precursor gi|188036206|pdb|3BBN|E Chain E, Homology Model
For The Spinach Chloroplast 30s Subunit Fitted To 9.4a
Cryo-Em Map Of The 70s Chlororibosome.
gi|5725342|emb|CAA63650.1| ribosomal protein S5 [Spinacia
oleracea]
Length = 308
Score = 295 bits (756), Expect = 2e-77
Identities = 151/248 (60%), Positives = 176/248 (70%)
Frame = +2
Query: 269 DIDTTFFDNADPEAISTFDXXXXXXXXXXXXSFDEGPLESEDEIAKAYEEIYGPAYSGET 448
DID TFF+ +P+ TFD + DE P ESE+EIA AYEE+YG AYSGE+
Sbjct: 61 DIDITFFEQDNPDEEITFDPPEKPEGYIPPRAVDEPPFESEEEIALAYEELYGAAYSGES 120
Query: 449 FLGNDIYVMDSKVKKTSGLGSKNKREKVKDGFEEXXXXXXXXXXXXXXXXXLHFRAIXXX 628
LGND+Y MDSK+KK +G GSK+K+EK++DGFEE + FRAI
Sbjct: 121 LLGNDVYAMDSKIKKATGFGSKSKKEKIRDGFEENVVQVRRVTKVVKGGKHMRFRAIVVV 180
Query: 629 XXXXXXXXXXXXXXXXXXXXXQKSAVNARRNIVTVPMTKYLTFPHRSDGDYGAAKVMLRP 808
QK+AV+ARRNI+TVPMTKYLTFPHR++ DYGAA+VMLRP
Sbjct: 181 GDKKGQVGVGVGKAKEVVSAVQKAAVDARRNIITVPMTKYLTFPHRNEADYGAARVMLRP 240
Query: 809 ASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMRQFSEVAKDRG 988
A+PGTGVIAGGAVR VLEMAGVENALGKQLGSNNALNNARAT+VAVQ MRQFS+VA+DRG
Sbjct: 241 AAPGTGVIAGGAVRTVLEMAGVENALGKQLGSNNALNNARATIVAVQTMRQFSDVARDRG 300
Query: 989 IPMEELWK 1012
IPMEELWK
Sbjct: 301 IPMEELWK 308
>gb|ESW31331.1| hypothetical protein PHAVU_002G229700g [Phaseolus vulgaris]
Length = 301
Score = 294 bits (753), Expect = 5e-77
Identities = 153/250 (61%), Positives = 174/250 (69%)
Frame = +2
Query: 263 STDIDTTFFDNADPEAISTFDXXXXXXXXXXXXSFDEGPLESEDEIAKAYEEIYGPAYSG 442
S DIDT+FFDN +P+ F+ SFD+ PLE+EDEIA AYEE+YGPA+SG
Sbjct: 52 SDDIDTSFFDNLNPQDDIDFNPPEPPEGFVAPPSFDDSPLETEDEIAAAYEELYGPAFSG 111
Query: 443 ETFLGNDIYVMDSKVKKTSGLGSKNKREKVKDGFEEXXXXXXXXXXXXXXXXXLHFRAIX 622
T LGND++ D+ VKK +G GS K+EK++DGFEE L FRA+
Sbjct: 112 VTVLGNDVFETDALVKKDTGFGSGGKKEKIRDGFEERVVQVRRVTKVVKGGKQLRFRAVV 171
Query: 623 XXXXXXXXXXXXXXXXXXXXXXXQKSAVNARRNIVTVPMTKYLTFPHRSDGDYGAAKVML 802
QKSA NARRNI+ VPMTKY TFPHRSDGDYGAAKVML
Sbjct: 172 IVGDRKGQVGVGVGKAKEVVAAVQKSAANARRNIIKVPMTKYSTFPHRSDGDYGAAKVML 231
Query: 803 RPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMRQFSEVAKD 982
RPASPGTGVIAGGAVRIVLEMAGVENALGKQ+GSNNALNNARATV+AVQKM+QF EVA +
Sbjct: 232 RPASPGTGVIAGGAVRIVLEMAGVENALGKQIGSNNALNNARATVIAVQKMKQFREVALE 291
Query: 983 RGIPMEELWK 1012
RGIPMEELWK
Sbjct: 292 RGIPMEELWK 301
>gb|AGV54467.1| 30S ribosomal protein S5 [Phaseolus vulgaris]
Length = 301
Score = 291 bits (745), Expect = 4e-76
Identities = 152/250 (60%), Positives = 173/250 (69%)
Frame = +2
Query: 263 STDIDTTFFDNADPEAISTFDXXXXXXXXXXXXSFDEGPLESEDEIAKAYEEIYGPAYSG 442
S DIDT+FFDN +P+ F+ SFD+ PLE+EDEIA AYEE+YGPA+SG
Sbjct: 52 SDDIDTSFFDNLNPQDDIDFNPPEPPEGFVAPPSFDDSPLETEDEIAAAYEELYGPAFSG 111
Query: 443 ETFLGNDIYVMDSKVKKTSGLGSKNKREKVKDGFEEXXXXXXXXXXXXXXXXXLHFRAIX 622
T LGND++ + VKK +G GS K+EK++DGFEE L FRA+
Sbjct: 112 VTVLGNDVFETAALVKKDTGFGSGGKKEKIRDGFEERVVQVRRVTKVVKGGKQLRFRAVV 171
Query: 623 XXXXXXXXXXXXXXXXXXXXXXXQKSAVNARRNIVTVPMTKYLTFPHRSDGDYGAAKVML 802
QKSA NARRNI+ VPMTKY TFPHRSDGDYGAAKVML
Sbjct: 172 IVGDRKGQVGVGVGKAKEVVAAVQKSAANARRNIIKVPMTKYSTFPHRSDGDYGAAKVML 231
Query: 803 RPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMRQFSEVAKD 982
RPASPGTGVIAGGAVRIVLEMAGVENALGKQ+GSNNALNNARATV+AVQKM+QF EVA +
Sbjct: 232 RPASPGTGVIAGGAVRIVLEMAGVENALGKQIGSNNALNNARATVIAVQKMKQFREVALE 291
Query: 983 RGIPMEELWK 1012
RGIPMEELWK
Sbjct: 292 RGIPMEELWK 301
>ref|NP_180936.1| 30S ribosomal protein S5 [Arabidopsis thaliana]
gi|75101015|sp|P93014.1|RR5_ARATH RecName: Full=30S
ribosomal protein S5, chloroplastic; Flags: Precursor
gi|1707008|gb|AAC69132.1| 30S ribosomal protein S5
[Arabidopsis thaliana] gi|15450886|gb|AAK96714.1| 30S
ribosomal protein S5 [Arabidopsis thaliana]
gi|20259882|gb|AAM13288.1| 30S ribosomal protein S5
[Arabidopsis thaliana] gi|21593322|gb|AAM65271.1| 30S
ribosomal protein S5 [Arabidopsis thaliana]
gi|330253794|gb|AEC08888.1| 30S ribosomal protein S5
[Arabidopsis thaliana]
Length = 303
Score = 291 bits (745), Expect = 4e-76
Identities = 155/255 (60%), Positives = 179/255 (70%), Gaps = 2/255 (0%)
Frame = +2
Query: 254 KANSTDIDTTFFDNADPEAIST--FDXXXXXXXXXXXXSFDEGPLESEDEIAKAYEEIYG 427
KA+STD +T FF++ PE + FD FDEG E+E+EIA A+EE+YG
Sbjct: 49 KASSTDTETIFFEDETPEITANVVFDPPIAPEGFVSPPYFDEGSDETEEEIATAFEELYG 108
Query: 428 PAYSGETFLGNDIYVMDSKVKKTSGLGSKNKREKVKDGFEEXXXXXXXXXXXXXXXXXLH 607
PAYSGE+ LG DIYVMDSK KK+SG+G K K++K++DGFEE L
Sbjct: 109 PAYSGESMLGKDIYVMDSKHKKSSGIGGKPKKDKIRDGFEERVVQVRRVTKVVKGGKQLK 168
Query: 608 FRAIXXXXXXXXXXXXXXXXXXXXXXXXQKSAVNARRNIVTVPMTKYLTFPHRSDGDYGA 787
FRAI QKSA++ARRNIV VPMTKY TFPHRS+GDYGA
Sbjct: 169 FRAIVVVGDKQGNVGVGCAKAKEVVAAVQKSAIDARRNIVQVPMTKYSTFPHRSEGDYGA 228
Query: 788 AKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMRQFS 967
AKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARAT+ AVQ+MRQF
Sbjct: 229 AKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATLAAVQQMRQFR 288
Query: 968 EVAKDRGIPMEELWK 1012
+VA++RGIPMEELWK
Sbjct: 289 DVAQERGIPMEELWK 303
>ref|XP_006849392.1| hypothetical protein AMTR_s00160p00027870 [Amborella trichopoda]
gi|548852953|gb|ERN10973.1| hypothetical protein
AMTR_s00160p00027870 [Amborella trichopoda]
Length = 306
Score = 291 bits (744), Expect = 5e-76
Identities = 156/253 (61%), Positives = 176/253 (69%)
Frame = +2
Query: 254 KANSTDIDTTFFDNADPEAISTFDXXXXXXXXXXXXSFDEGPLESEDEIAKAYEEIYGPA 433
+A +++DT+FFD DPE F+ F E P E+E+EIA AYEEIYGPA
Sbjct: 55 RAKDSNLDTSFFDELDPEQEIAFEQPSPPEGWVKPPPFYELPPETEEEIAGAYEEIYGPA 114
Query: 434 YSGETFLGNDIYVMDSKVKKTSGLGSKNKREKVKDGFEEXXXXXXXXXXXXXXXXXLHFR 613
YSGE+ LGNDIYVMD+KVKK+ G G K K+EKV+DGFEE L FR
Sbjct: 115 YSGESVLGNDIYVMDAKVKKSVGFGKK-KKEKVRDGFEERVVQVRRVTKVVKGGKQLSFR 173
Query: 614 AIXXXXXXXXXXXXXXXXXXXXXXXXQKSAVNARRNIVTVPMTKYLTFPHRSDGDYGAAK 793
AI +KSA NARRNIVTVPMTKY TFPHR+DGDYGAAK
Sbjct: 174 AIVVVGDKQGRVGVGVGKAKEVISAVEKSATNARRNIVTVPMTKYSTFPHRADGDYGAAK 233
Query: 794 VMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMRQFSEV 973
VMLRPASPGTGVIAGG+VRIVLEMAGVENALGKQLGSNNALNNARAT+VAV MRQF +V
Sbjct: 234 VMLRPASPGTGVIAGGSVRIVLEMAGVENALGKQLGSNNALNNARATLVAVSNMRQFRDV 293
Query: 974 AKDRGIPMEELWK 1012
A++RGIPMEELWK
Sbjct: 294 ARERGIPMEELWK 306
>gb|EXC18094.1| 30S ribosomal protein S5 [Morus notabilis]
Length = 337
Score = 288 bits (738), Expect = 3e-75
Identities = 161/275 (58%), Positives = 180/275 (65%), Gaps = 25/275 (9%)
Frame = +2
Query: 263 STDIDTTFFDNAD-PEAISTFDXXXXXXXXXXXXSFDEGPLESEDEIAKAYEEIYGPAYS 439
S+D DT+FF + E + ++ SFDEGP+E+EDEIA AYEE+YGPAYS
Sbjct: 63 SSDSDTSFFTTDEFDEDDAVYEPPEAPEGFVAPPSFDEGPMETEDEIAAAYEELYGPAYS 122
Query: 440 GETFLGNDIYVMDSKVKKTSGLGSKNKREKVKDGFEEXXXXXXXXXXXXXXXXXLHFRAI 619
G + LGNDIYVM+SKVKKT G GS K+EK++DGFEE LHFRAI
Sbjct: 123 GVSVLGNDIYVMNSKVKKTGGFGSGAKKEKIRDGFEERVVQVRRVTKVVKGGKQLHFRAI 182
Query: 620 XXXXXXXXXXXXXXXXXXXXXXXXQKSAVNARRNIVTVPMTKYLTFPH------------ 763
QKSAVNARRNI+TVPMTKYLTFPH
Sbjct: 183 VVVGDKKGQVGVGVGKAKEVIAAVQKSAVNARRNIITVPMTKYLTFPHSESHLVTSSHIA 242
Query: 764 ------------RSDGDYGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSN 907
RS+GDYGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSN
Sbjct: 243 FSNYIKDYPTNCRSEGDYGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSN 302
Query: 908 NALNNARATVVAVQKMRQFSEVAKDRGIPMEELWK 1012
NALNNARATVVAV +MRQF EVA++RGIPMEELWK
Sbjct: 303 NALNNARATVVAVLQMRQFREVARERGIPMEELWK 337
>ref|XP_006449367.1| hypothetical protein CICLE_v10016057mg [Citrus clementina]
gi|557551978|gb|ESR62607.1| hypothetical protein
CICLE_v10016057mg [Citrus clementina]
Length = 305
Score = 288 bits (738), Expect = 3e-75
Identities = 156/242 (64%), Positives = 174/242 (71%)
Frame = +2
Query: 287 FDNADPEAISTFDXXXXXXXXXXXXSFDEGPLESEDEIAKAYEEIYGPAYSGETFLGNDI 466
F+N D +A + FD SFDE P+E+EDEIA AYEE+YGPAY+G + LGND+
Sbjct: 66 FNNPDEDA-AVFDPPTPPEDYTPPPSFDELPMETEDEIAAAYEELYGPAYAGVSVLGNDV 124
Query: 467 YVMDSKVKKTSGLGSKNKREKVKDGFEEXXXXXXXXXXXXXXXXXLHFRAIXXXXXXXXX 646
YVMDSK KKTS G K K+EKVKDGFEE L FRAI
Sbjct: 125 YVMDSKAKKTSAFG-KTKKEKVKDGFEERVVQVRRVTKVVKGGKQLKFRAIVVVGDKKGQ 183
Query: 647 XXXXXXXXXXXXXXXQKSAVNARRNIVTVPMTKYLTFPHRSDGDYGAAKVMLRPASPGTG 826
QKSAV+ARRNIVTVPMTKYLTFPHRSDGD+GAAKVMLRPA+PGTG
Sbjct: 184 VGVGVAKAKEVIAAVQKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPAAPGTG 243
Query: 827 VIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMRQFSEVAKDRGIPMEEL 1006
VIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKM+Q+ EV+++RGIPMEEL
Sbjct: 244 VIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGIPMEEL 303
Query: 1007 WK 1012
WK
Sbjct: 304 WK 305
>gb|EPS57449.1| hypothetical protein M569_17368, partial [Genlisea aurea]
Length = 216
Score = 288 bits (736), Expect = 5e-75
Identities = 147/217 (67%), Positives = 168/217 (77%)
Frame = +2
Query: 362 SFDEGPLESEDEIAKAYEEIYGPAYSGETFLGNDIYVMDSKVKKTSGLGSKNKREKVKDG 541
S DEGP+ESE+EIA AYEE+YGPAYSGE+FLGND+YVMDSK+KK++G G K+EKV+DG
Sbjct: 1 SIDEGPMESEEEIAIAYEELYGPAYSGESFLGNDVYVMDSKIKKSTGFGGA-KKEKVRDG 59
Query: 542 FEEXXXXXXXXXXXXXXXXXLHFRAIXXXXXXXXXXXXXXXXXXXXXXXXQKSAVNARRN 721
F+E LHFRA+ QKSAVNARRN
Sbjct: 60 FDERVVQVRRVTKVVKGGKQLHFRAVVVVGDKQGNVGVGVGKAKEVIAAVQKSAVNARRN 119
Query: 722 IVTVPMTKYLTFPHRSDGDYGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLG 901
I+TVPMTKY TFPHRS+ +YGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLG
Sbjct: 120 IITVPMTKYKTFPHRSEAEYGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLG 179
Query: 902 SNNALNNARATVVAVQKMRQFSEVAKDRGIPMEELWK 1012
SNNALNNARATVVAVQ+M+QFS+VA++RGIPME+LWK
Sbjct: 180 SNNALNNARATVVAVQRMKQFSQVAEERGIPMEQLWK 216
>ref|XP_004505073.1| PREDICTED: LOW QUALITY PROTEIN: 30S ribosomal protein S5,
chloroplastic-like [Cicer arietinum]
Length = 307
Score = 288 bits (736), Expect = 5e-75
Identities = 151/251 (60%), Positives = 174/251 (69%)
Frame = +2
Query: 260 NSTDIDTTFFDNADPEAISTFDXXXXXXXXXXXXSFDEGPLESEDEIAKAYEEIYGPAYS 439
+S + D +FFD + PE TF+ S ++GP+ESEDEIA AYEE+YG YS
Sbjct: 57 SSDETDNSFFDTSVPEEDLTFNPPEIPEGFVAPPSIEDGPVESEDEIAAAYEELYGTGYS 116
Query: 440 GETFLGNDIYVMDSKVKKTSGLGSKNKREKVKDGFEEXXXXXXXXXXXXXXXXXLHFRAI 619
G + LGNDIY MDSK KK SG GS K+EK++DGFEE + FRAI
Sbjct: 117 GVSVLGNDIYAMDSKAKKMSGFGSGLKKEKIRDGFEERVVQVRRVTKVVKGGKQMRFRAI 176
Query: 620 XXXXXXXXXXXXXXXXXXXXXXXXQKSAVNARRNIVTVPMTKYLTFPHRSDGDYGAAKVM 799
QK+A+NARRN+V VPMTKYLTFPHRSDGD GAAKVM
Sbjct: 177 VVVGDKKGQVGVGVGKAKEVIAAVQKAAINARRNLVRVPMTKYLTFPHRSDGDVGAAKVM 236
Query: 800 LRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMRQFSEVAK 979
LRPASPGTGVIAGG+VRIVLEMAGVENALGKQLGS+NALNNARATVVAVQ+MRQ+SEV+
Sbjct: 237 LRPASPGTGVIAGGSVRIVLEMAGVENALGKQLGSDNALNNARATVVAVQRMRQYSEVSA 296
Query: 980 DRGIPMEELWK 1012
+RGIPMEELWK
Sbjct: 297 ERGIPMEELWK 307
>ref|XP_006467770.1| PREDICTED: 30S ribosomal protein S5, chloroplastic-like [Citrus
sinensis]
Length = 306
Score = 287 bits (735), Expect = 6e-75
Identities = 156/242 (64%), Positives = 173/242 (71%)
Frame = +2
Query: 287 FDNADPEAISTFDXXXXXXXXXXXXSFDEGPLESEDEIAKAYEEIYGPAYSGETFLGNDI 466
F+N D +A + FD SFDE P+E+EDEIA AYEE+YGPAY+G + GND+
Sbjct: 67 FNNPDEDA-AVFDPPTPPEDYTPPPSFDELPMETEDEIAAAYEELYGPAYAGVSVSGNDV 125
Query: 467 YVMDSKVKKTSGLGSKNKREKVKDGFEEXXXXXXXXXXXXXXXXXLHFRAIXXXXXXXXX 646
YVMDSK KKTS G K K+EKVKDGFEE L FRAI
Sbjct: 126 YVMDSKAKKTSAFG-KTKKEKVKDGFEERVVQVRRVTKVVKGGKQLKFRAIVVVGDKKGQ 184
Query: 647 XXXXXXXXXXXXXXXQKSAVNARRNIVTVPMTKYLTFPHRSDGDYGAAKVMLRPASPGTG 826
QKSAV+ARRNIVTVPMTKYLTFPHRSDGD+GAAKVMLRPASPGTG
Sbjct: 185 VGVGVAKAKEVIAAVQKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPASPGTG 244
Query: 827 VIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMRQFSEVAKDRGIPMEEL 1006
VIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKM+Q+ EV+++RGIPMEEL
Sbjct: 245 VIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGIPMEEL 304
Query: 1007 WK 1012
WK
Sbjct: 305 WK 306