BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Catharanthus22_contig00001243
         (1080 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]        336   8e-90
emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]   318   2e-84
emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera]   312   2e-82
emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]   307   4e-81
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118...   302   2e-79
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-...   297   4e-78
dbj|BAB09923.1| copia-like retrotransposable element [Arabidopsi...   293   1e-76
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]     289   2e-75
gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsi...   288   3e-75
gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]     285   3e-74
gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subc...   285   3e-74
emb|CAA31653.1| polyprotein [Arabidopsis thaliana]                    284   4e-74
gb|AAF19226.1|AC007505_2 Highly similar to Ta1-3 polyprotein [Ar...   284   4e-74
gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]     282   1e-73
gb|AAD23690.1| putative retroelement pol polyprotein [Arabidopsi...   278   3e-72
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-...   277   5e-72
pir||S23319 hypothetical protein 2 - Arabidopsis thaliana retrot...   277   5e-72
gb|AAC62132.1| copia-like retroelement pol polyprotein [Arabidop...   277   5e-72
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc...   277   6e-72
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc...   276   1e-71

>emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]
          Length = 1334

 Score =  336 bits (862), Expect = 8e-90
 Identities = 174/373 (46%), Positives = 238/373 (63%), Gaps = 15/373 (4%)
 Frame = +3

Query: 3    LKTIRTDNGLEFCNKKFSDLCALHGIIHHRTVRHNPQQNGVAERMNRTIMDKVRCLMVSS 182
            LK +RTDNGLEFC+K F + C  HGI  H+TVR  PQQNG+AERMNRT++DK RC++++S
Sbjct: 545  LKCLRTDNGLEFCSKVFEEYCQKHGIKRHKTVRFTPQQNGLAERMNRTLVDKTRCMLINS 604

Query: 183  GIPKPFWGEAVSTAVYLINRSPSTAINFKTPLEMWSGEPPNLSNLRVFGCAAFVHQKEGK 362
             +P+ FW EAV+TA YL+NRSPS+AI FKTP E+W+G+P N  NLRVFGC A++H  +GK
Sbjct: 605  KLPRSFWAEAVNTASYLVNRSPSSAIGFKTPEELWNGKPANYQNLRVFGCPAYLHINQGK 664

Query: 363  LDPRSRKGVFIGYPSGVKGYKVWLKGEPGVRVLVSRDVIFNEQDMPCLKAE--------- 515
            L+ R+ KGVF+GYP GVKGYK+W K +   + +VSRDV+F+E  +    AE         
Sbjct: 665  LEARALKGVFVGYPDGVKGYKIWCKDQG--KCIVSRDVVFHESVLLKESAEHDAGLQDNP 722

Query: 516  -ANPENPSETPIDGIIPV-----EVENTSESSQPHDQPESSGTSDIPTDXXXXXXXXXXX 677
             AN  + SET    +  +     E E  S+  +   + E    S++P             
Sbjct: 723  AANKRSGSETSKVNVELLTDKSSEKEAASDDERATAESEEHEVSELP------------- 769

Query: 678  XXXXXXXXXXXAQAQALRDYQLSRDRARRETRKPARYGYSYIVSYACAAASFVEEKEPMC 857
                        QA  L++YQL+RDR RRE R P RYGY+ +++YA   A  V  +EP  
Sbjct: 770  ------------QAD-LQNYQLARDRVRREVRAPVRYGYADLIAYALLCADEVTIEEPAN 816

Query: 858  FSDVLKSPNRSLWLRAMEEEMSSLHKNKTWILVPKPSKQKLIDCKWIFKIKEPDSANEPP 1037
            FS+ ++S +   WL AM++EM SL +N+TW L+P P  ++LI+CKWIFK  E     EPP
Sbjct: 817  FSEAMESVHCDKWLEAMQDEMESLQRNQTWTLIPNPGNKRLINCKWIFKRNEGIPDVEPP 876

Query: 1038 RFKARLVAKGFSQ 1076
            ++KARLVA+GF+Q
Sbjct: 877  KYKARLVARGFTQ 889


>emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]
          Length = 1208

 Score =  318 bits (815), Expect = 2e-84
 Identities = 157/358 (43%), Positives = 225/358 (62%)
 Frame = +3

Query: 3    LKTIRTDNGLEFCNKKFSDLCALHGIIHHRTVRHNPQQNGVAERMNRTIMDKVRCLMVSS 182
            +K +RTDNGLEF +  F+ LC   GI  HRTVR+ PQQNG+AERMNRTI+++VRC++ SS
Sbjct: 513  VKKLRTDNGLEFLSNDFNSLCQKEGIARHRTVRYTPQQNGLAERMNRTILERVRCMLSSS 572

Query: 183  GIPKPFWGEAVSTAVYLINRSPSTAINFKTPLEMWSGEPPNLSNLRVFGCAAFVHQKEGK 362
            G+ K FW EA  TAV+LINRSPS+A+ FKTP E W+G+  +  +L+VFGC A+VH K  K
Sbjct: 573  GLSKVFWAEAAETAVHLINRSPSSALQFKTPQEKWTGKAADYQHLKVFGCTAYVHTKTDK 632

Query: 363  LDPRSRKGVFIGYPSGVKGYKVWLKGEPGVRVLVSRDVIFNEQDMPCLKAEANPENPSET 542
            L+PR+ K +F+GYP GVKGYK+W++ +   + ++SRDV FNEQDM       + + P++ 
Sbjct: 633  LEPRAVKCIFLGYPKGVKGYKLWIETQGKGKCIISRDVTFNEQDM-------SKQTPAKD 685

Query: 543  PIDGIIPVEVENTSESSQPHDQPESSGTSDIPTDXXXXXXXXXXXXXXXXXXXXXXAQAQ 722
             ++G+  ++ E   E+ QP    E+S  +                              Q
Sbjct: 686  -VEGLDQLQFEVEHETLQPEKSKETSSKT----------------AQEEIVHERQNEPTQ 728

Query: 723  ALRDYQLSRDRARRETRKPARYGYSYIVSYACAAASFVEEKEPMCFSDVLKSPNRSLWLR 902
             L  Y L RDR +R+ + P RYG + + ++A + A  + + EP  + + + S     W++
Sbjct: 729  GLESYNLVRDRQKRQVKPPKRYGQAEMTAFALSVAEEIVDMEPKTYQEAINSNEADQWVK 788

Query: 903  AMEEEMSSLHKNKTWILVPKPSKQKLIDCKWIFKIKEPDSANEPPRFKARLVAKGFSQ 1076
            A++EEM SL KN+TW LV KP  +K++  KW+FK K+    NE PR+KARLVAKGFSQ
Sbjct: 789  AIQEEMDSLRKNETWELVTKPKDRKVVGSKWVFKRKQGTLGNEAPRYKARLVAKGFSQ 846


>emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera]
          Length = 1562

 Score =  312 bits (799), Expect = 2e-82
 Identities = 158/375 (42%), Positives = 222/375 (59%), Gaps = 17/375 (4%)
 Frame = +3

Query: 3    LKTIRTDNGLEFCNKKFSDLCALHGIIHHRTVRHNPQQNGVAERMNRTIMDKVRCLMVSS 182
            +KT+RTDNGLEFCNK F + C   GI+ HRTVRH PQQNGVAERMN+T++ + RC+ + +
Sbjct: 654  VKTLRTDNGLEFCNKDFDEFCRKEGIVRHRTVRHTPQQNGVAERMNQTLVQRARCMRIDA 713

Query: 183  GIPKPFWGEAVSTAVYLINRSPSTAINFKTPLEMWSGEPPNLSNLRVFGCAAFVHQKEGK 362
            G+ K FW EAV+TA YL+NRSPSTAI+FKTP E+WSG+P N S L++FGC A+ H  +GK
Sbjct: 714  GLSKKFWAEAVNTAAYLVNRSPSTAIDFKTPQEVWSGKPSNYSGLKIFGCPAYAHVSDGK 773

Query: 363  LDPRSRKGVFIGYPSGVKGYKVWLKGEPGVRVLVSRDVIFNEQDM-----------PCLK 509
            L+PR+ K +F+GY +GVKGY++W   +   + ++SRDV F+E  M              K
Sbjct: 774  LEPRAMKCIFLGYATGVKGYRLWCTEDRTPKFIISRDVTFDESAMFGQRKEFGDLAGTSK 833

Query: 510  AEANPENPSETPIDGIIPVEVENTSESSQPHDQPESSGTSDIPTDXXXXXXXXXXXXXXX 689
             +       E  +D  +   V++TSE     DQ +S                        
Sbjct: 834  TDLGANQKVEFEVDAPMENGVDDTSEEQPVIDQNDSQ----------------------- 870

Query: 690  XXXXXXXAQAQALRDYQLSRDRARRETRKPARY------GYSYIVSYACAAASFVEEKEP 851
                             ++  R RRE R+P RY        +  V++A A A  +  +EP
Sbjct: 871  ----------------SIAAHRPRREIRRPMRYVDCVSANITNPVAFALAVAEEIGREEP 914

Query: 852  MCFSDVLKSPNRSLWLRAMEEEMSSLHKNKTWILVPKPSKQKLIDCKWIFKIKEPDSANE 1031
              + + ++S +   WL +M++EM+SL KN+TW LVP P   K +DCKW+FKIK+  S +E
Sbjct: 915  RSYKEAMESKDSKKWLSSMDDEMASLRKNQTWELVPLPEGVKPVDCKWLFKIKDGISXDE 974

Query: 1032 PPRFKARLVAKGFSQ 1076
            PP++K+RLVAKGFSQ
Sbjct: 975  PPKYKSRLVAKGFSQ 989


>emb|CAN61272.1| hypothetical protein VITISV_039063 [Vitis vinifera]
          Length = 1643

 Score =  307 bits (787), Expect = 4e-81
 Identities = 156/376 (41%), Positives = 221/376 (58%), Gaps = 17/376 (4%)
 Frame = +3

Query: 3    LKTIRTDNGLEFCNKKFSDLCALHGIIHHRTVRHNPQQNGVAERMNRTIMDKVRCLMVSS 182
            +KT+RTDNGLEFCNK F + C   GI+ HRTVRH PQQNGVAERMN+T++ + RC+ + +
Sbjct: 867  VKTLRTDNGLEFCNKDFDEFCRKEGIVRHRTVRHTPQQNGVAERMNQTLVQRARCMRIDA 926

Query: 183  GIPKPFWGEAVSTAVYLINRSPSTAINFKTPLEMWSGEPPNLSNLRVFGCAAFVHQKEGK 362
            G+ K FW EAV+TA YL+NRSPSTAI+FKTP E+WSG+P N S L++FGC A+ H  +GK
Sbjct: 927  GLSKKFWAEAVNTAAYLVNRSPSTAIDFKTPQEVWSGKPSNYSGLKIFGCPAYAHVSDGK 986

Query: 363  LDPRSRKGVFIGYPSGVKGYKVWLKGEPGVRVLVSRDVIFNEQDM-----------PCLK 509
            L+PR+ K +F+GY +GVKGY++W   +   + ++SRDV F+E  M              K
Sbjct: 987  LEPRAMKCIFLGYATGVKGYRLWCTEDRTPKFIISRDVTFDESAMFGQRKEFGDLAGTSK 1046

Query: 510  AEANPENPSETPIDGIIPVEVENTSESSQPHDQPESSGTSDIPTDXXXXXXXXXXXXXXX 689
             +       E  +D  +   V++TSE     DQ +S                        
Sbjct: 1047 TDLGANQKVEFEVDAPMENGVDDTSEEQPVIDQNDSQ----------------------- 1083

Query: 690  XXXXXXXAQAQALRDYQLSRDRARRETRKPARY------GYSYIVSYACAAASFVEEKEP 851
                             ++  R RRE R+P RY        +  V++A A A  +  +EP
Sbjct: 1084 ----------------SIAAXRPRREIRRPMRYVDCVSANITNPVAFALAVAEEIGREEP 1127

Query: 852  MCFSDVLKSPNRSLWLRAMEEEMSSLHKNKTWILVPKPSKQKLIDCKWIFKIKEPDSANE 1031
              + + ++S +   WL +M++EM+SL KN+TW LVP P   K +DCKW+FKIK+  S +E
Sbjct: 1128 RSYKEAMESKDSKKWLSSMDDEMASLRKNQTWELVPLPEGVKPVDCKWLFKIKDGISEDE 1187

Query: 1032 PPRFKARLVAKGFSQI 1079
            PP++K+RLVAK FS +
Sbjct: 1188 PPKYKSRLVAKVFSPV 1203


>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
            copia LTR rider [Solanum lycopersicum]
          Length = 1307

 Score =  302 bits (773), Expect = 2e-79
 Identities = 158/362 (43%), Positives = 222/362 (61%), Gaps = 4/362 (1%)
 Frame = +3

Query: 3    LKTIRTDNGLEFCNKKFSDLCALHGIIHHRTVRHNPQQNGVAERMNRTIMDKVRCLMVSS 182
            +K +RTDNGLEFC  +F   C   GI  HRTVR+ PQQNGVAERMN+T++++ RC++ ++
Sbjct: 533  IKRLRTDNGLEFCWSEFDQFCKDEGIARHRTVRNTPQQNGVAERMNQTLLERARCMLSNA 592

Query: 183  GIPKPFWGEAVSTAVYLINRSPSTAINFKTPLEMWSGEPPNLSNLRVFGCAAFVHQKEGK 362
            G+ + FW EAVSTA YLINR P T I  KTP+EMWSG+  + SNL+ FGC A+ H  EGK
Sbjct: 593  GLDRRFWAEAVSTACYLINRGPHTGIQCKTPMEMWSGKAADYSNLKAFGCTAYYHVSEGK 652

Query: 363  LDPRSRKGVFIGYPSGVKGYKVWLKGEPGVRVLVSRDVIFNEQDMPCLKAEANPENPSET 542
            L+PR++KGVF+GY  GVKG+++W   E   RV++SR+V+F+E   P L+    P   SET
Sbjct: 653  LEPRAKKGVFVGYGDGVKGFRIWSPAEK--RVIMSRNVVFDES--PLLRTIVKPTTTSET 708

Query: 543  -PIDGIIPVEV-ENTSESSQPHDQPESSGT-SDIPTDXXXXXXXXXXXXXXXXXXXXXXA 713
              +D  +  +V +N S+  +P ++ +   T +DIP                         
Sbjct: 709  GSLDKQVEFQVIQNESDLKEPEEEDQEPQTETDIPESMPSDI------------------ 750

Query: 714  QAQALRDYQLSRDRARR-ETRKPARYGYSYIVSYACAAASFVEEKEPMCFSDVLKSPNRS 890
                     +++DR RR   R P RYG+  +V YA   A  V+  EP  + + + S +  
Sbjct: 751  ------HQSIAQDRPRRVGVRPPTRYGFEDMVGYALQVAEEVDTSEPSTYKEAILSSDSE 804

Query: 891  LWLRAMEEEMSSLHKNKTWILVPKPSKQKLIDCKWIFKIKEPDSANEPPRFKARLVAKGF 1070
             W  AM +EM SLHKN+TW LV +PS +K+I CKW+FK KE  S  E  ++KAR+VA+GF
Sbjct: 805  KWFAAMGDEMESLHKNQTWDLVIQPSGRKIITCKWVFKKKEGISPAEGVKYKARVVARGF 864

Query: 1071 SQ 1076
            +Q
Sbjct: 865  NQ 866


>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77548751|gb|ABA91548.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 2340

 Score =  297 bits (761), Expect = 4e-78
 Identities = 162/361 (44%), Positives = 220/361 (60%), Gaps = 2/361 (0%)
 Frame = +3

Query: 3    LKTIRTDNGLEFCNKKFSDLCALHGIIHHRTVRHNPQQNGVAERMNRTIMDKVRCLMVSS 182
            +K +RTDNG+EFC+K F   C   GI+ H TV H PQQNGVAERMNRTI+ K RCL+ ++
Sbjct: 762  VKILRTDNGMEFCSKIFKSYCKSEGIVRHYTVPHTPQQNGVAERMNRTIISKARCLLSNA 821

Query: 183  GIPKPFWGEAVSTAVYLINRSPSTAINFKTPLEMWSGEPPNLSNLRVFGCAAFVHQKEGK 362
            G+PK FW EAVSTA YLINRSPS AI+ KTP+E+WSG P N S+LRVFGC A+ H   GK
Sbjct: 822  GLPKQFWAEAVSTACYLINRSPSYAIDKKTPIEVWSGSPANYSDLRVFGCTAYAHVDNGK 881

Query: 363  LDPRSRKGVFIGYPSGVKGYKVWLKGEPGVRVLVSRDVIFNEQDMPCLKAEANPENPSET 542
            L+PR+ K +F+GYPSGVKGYK+W       +V++SR+V+F+E  M   K   N    S+ 
Sbjct: 882  LEPRAIKCIFLGYPSGVKGYKLWCPETK--KVVISRNVVFHESVMLHDKPSTNVPVESQE 939

Query: 543  PIDGIIPVEVENTSESSQPHDQPESSGTSDIPTDXXXXXXXXXXXXXXXXXXXXXXAQAQ 722
                   V+VE+   S    ++ + +   D P                        +  Q
Sbjct: 940  KAS----VQVEHLISSGHAPEKEDVAINQDEPV-----------------IEDSNSSIVQ 978

Query: 723  ALRDYQLSRDRARRETRKPARY-GYSYIVSYACAAASFVE-EKEPMCFSDVLKSPNRSLW 896
                  +++DR +R  + P RY   + IV+YA + A  +E   EP  +S+ + S + + W
Sbjct: 979  QSPKRSIAKDRPKRNIKPPQRYIEEANIVAYALSVAEEIEGNAEPSTYSEAIVSDDCNRW 1038

Query: 897  LRAMEEEMSSLHKNKTWILVPKPSKQKLIDCKWIFKIKEPDSANEPPRFKARLVAKGFSQ 1076
            + AM +EM SL KN TW LV  P ++K I CKWIFK KE  S+++  R+KARL+AKG+SQ
Sbjct: 1039 ITAMHDEMESLEKNHTWELVKLPKEKKPIRCKWIFKRKEGISSSDEARYKARLIAKGYSQ 1098

Query: 1077 I 1079
            I
Sbjct: 1099 I 1099


>dbj|BAB09923.1| copia-like retrotransposable element [Arabidopsis thaliana]
          Length = 1342

 Score =  293 bits (749), Expect = 1e-76
 Identities = 156/368 (42%), Positives = 215/368 (58%), Gaps = 10/368 (2%)
 Frame = +3

Query: 3    LKTIRTDNGLEFCNKKFSDLCALHGIIHHRTVRHNPQQNGVAERMNRTIMDKVRCLMVSS 182
            LK + TDNGLEFCN++F   C   G+I HRT  + PQQNGVAERMNRTIM+KVRC++  S
Sbjct: 548  LKILITDNGLEFCNQEFDSFCRKEGVIRHRTCAYTPQQNGVAERMNRTIMNKVRCMLSES 607

Query: 183  GIPKPFWGEAVSTAVYLINRSPSTAINFKTPLEMWSGEPPNLSNLRVFGCAAFVHQKEGK 362
            G+ K FW EA STAV+LIN+SPS++I F  P E W+G PP+   L+ FG  A++H  +GK
Sbjct: 608  GLGKQFWAEAASTAVFLINKSPSSSIEFDIPEEKWTGHPPDYKILKKFGSVAYIHSDQGK 667

Query: 363  LDPRSRKGVFIGYPSGVKGYKVWLKGEPGVRVLVSRDVIFNEQDM--PCLKAEANPENPS 536
            L+PR++KG+F+GYP GVK +KVWL  +   + +VSRD++F E  M     K + + E+  
Sbjct: 668  LNPRAKKGIFLGYPDGVKRFKVWLLEDR--KCVVSRDIVFQENQMYKELQKNDMSEEDKQ 725

Query: 537  ETPIDGI------IPVEVENTSESSQPHDQPESSGTSDIPTDXXXXXXXXXXXXXXXXXX 698
             T ++        +  + EN SE     +Q ++S T     D                  
Sbjct: 726  LTEVERTLIELKNLSADDENQSEGGDNSNQEQASTTRSASKD---------------KQV 770

Query: 699  XXXXAQAQALRDYQLSRDRARRETRKPARY--GYSYIVSYACAAASFVEEKEPMCFSDVL 872
                +    L +Y L+RDR RR+ R P R+      +V +A       E  EP  + + +
Sbjct: 771  EETDSDDDCLENYLLARDRIRRQIRAPQRFVEEDDSLVGFALTMTEDGEVYEPETYEEAM 830

Query: 873  KSPNRSLWLRAMEEEMSSLHKNKTWILVPKPSKQKLIDCKWIFKIKEPDSANEPPRFKAR 1052
            +SP    W +A  EEM S+ KN TW ++ KP  +++I CKWIFK K      EPPR+KAR
Sbjct: 831  RSPECEKWKQATIEEMDSMKKNDTWDVIDKPEGKRVIGCKWIFKRKAGIPGVEPPRYKAR 890

Query: 1053 LVAKGFSQ 1076
            LVAKGFSQ
Sbjct: 891  LVAKGFSQ 898


>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1241

 Score =  289 bits (739), Expect = 2e-75
 Identities = 159/361 (44%), Positives = 216/361 (59%), Gaps = 2/361 (0%)
 Frame = +3

Query: 3    LKTIRTDNGLEFCNKKFSDLCALHGIIHHRTVRHNPQQNGVAERMNRTIMDKVRCLMVSS 182
            +K +RTDNG+E C+K F   C   GI+ H TV H PQQNGVAERMNRTI+ K RC++ ++
Sbjct: 464  VKILRTDNGMELCSKIFKSYCKSEGIVRHYTVPHTPQQNGVAERMNRTIISKARCMLSNA 523

Query: 183  GIPKPFWGEAVSTAVYLINRSPSTAINFKTPLEMWSGEPPNLSNLRVFGCAAFVHQKEGK 362
             +PK FW EAVSTA YLINRSPS AI+ KTP+E+WSG P N S+LRVFGC A+ H   GK
Sbjct: 524  SLPKQFWAEAVSTACYLINRSPSYAIDKKTPIEVWSGSPANYSDLRVFGCTAYAHVDNGK 583

Query: 363  LDPRSRKGVFIGYPSGVKGYKVWLKGEPGVRVLVSRDVIFNEQDMPCLKAEANPENPSET 542
            L+PR  K +F+GY SGVKGYK+W       +V++SR+V+F+E  M   K   N    S+ 
Sbjct: 584  LEPRVIKCIFLGYLSGVKGYKLWCPETK--KVVISRNVVFHESIMLHDKPSTNVPVESQE 641

Query: 543  PIDGIIPVEVENTSESSQPHDQPESSGTSDIPTDXXXXXXXXXXXXXXXXXXXXXXAQAQ 722
             +     V+VE+   S    ++ + +   D P                        +  Q
Sbjct: 642  KVS----VQVEHLISSGHAPEKEDVAINQDAPV-----------------IEDSDSSIVQ 680

Query: 723  ALRDYQLSRDRARRETRKPARY-GYSYIVSYACAAASFVE-EKEPMCFSDVLKSPNRSLW 896
                  +++DR +R T+ P RY   + IV+YA + A  +E   EP  +SD + S + + W
Sbjct: 681  QSPKRSIAKDRPKRNTKPPRRYIEEANIVAYALSVAEEIEGNAEPSTYSDAIVSDDCNRW 740

Query: 897  LRAMEEEMSSLHKNKTWILVPKPSKQKLIDCKWIFKIKEPDSANEPPRFKARLVAKGFSQ 1076
            + AM +EM SL KN +W L   P ++K I CKWIFK KE  S ++  R+KARLVAKG+SQ
Sbjct: 741  ITAMHDEMESLEKNHSWELEKLPKEKKPIRCKWIFKRKEGMSPSDEARYKARLVAKGYSQ 800

Query: 1077 I 1079
            I
Sbjct: 801  I 801


>gb|AAD19773.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1335

 Score =  288 bits (736), Expect = 3e-75
 Identities = 160/360 (44%), Positives = 215/360 (59%), Gaps = 2/360 (0%)
 Frame = +3

Query: 3    LKTIRTDNGLEFCNKKFSDLCALHGIIHHRTVRHNPQQNGVAERMNRTIMDKVRCLMVSS 182
            +K +RTDNGLE+CN  F   C   GI+ H+T  + PQQNG+AER+NRTIMDKVR ++  S
Sbjct: 537  VKKLRTDNGLEYCNHYFEKFCKEEGIVRHKTCAYTPQQNGIAERLNRTIMDKVRSMLSRS 596

Query: 183  GIPKPFWGEAVSTAVYLINRSPSTAINFKTPLEMWSGEPPNLSNLRVFGCAAFVHQKEGK 362
            G+ K FW EA STAVYLINRSPSTAINF  P E W+G  P+LS+LR FGC A++H  +GK
Sbjct: 597  GMEKKFWAEAASTAVYLINRSPSTAINFDLPEEKWTGALPDLSSLRKFGCLAYIHADQGK 656

Query: 363  LDPRSRKGVFIGYPSGVKGYKVWLKGEPGVRVLVSRDVIFNEQDM-PCLKAEANPENPSE 539
            L+PRS+KG+F  YP GVKGYKVW+  +   + ++SR+VIF EQ M   LK ++     SE
Sbjct: 657  LNPRSKKGIFTSYPEGVKGYKVWVLEDK--KCVISRNVIFREQVMFKDLKGDSQ-NTISE 713

Query: 540  TPIDGI-IPVEVENTSESSQPHDQPESSGTSDIPTDXXXXXXXXXXXXXXXXXXXXXXAQ 716
            + ++ + +  ++ +   + Q     ++S  S+  T                       A 
Sbjct: 714  SDLEDLRVNPDMNDQEFTDQGGATQDNSNPSEATTSHNPVLNSPTHSQDEESEEEDSDA- 772

Query: 717  AQALRDYQLSRDRARRETRKPARYGYSYIVSYACAAASFVEEKEPMCFSDVLKSPNRSLW 896
             + L  YQL RDR RR  +   +Y  S +V +A  +     + EP  + + L  P+   W
Sbjct: 773  VEDLSTYQLVRDRVRRTIKANPKYNESNMVGFAYYSED-DGKPEPKSYQEALLDPDWEKW 831

Query: 897  LRAMEEEMSSLHKNKTWILVPKPSKQKLIDCKWIFKIKEPDSANEPPRFKARLVAKGFSQ 1076
              AM+EEM S+ KN TW LV KP K KLI C+W+F  K      E PRF ARLVAKGF+Q
Sbjct: 832  NAAMKEEMVSMSKNHTWDLVTKPEKVKLIGCRWVFTRKAGIPGVEAPRFIARLVAKGFTQ 891


>gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1280

 Score =  285 bits (728), Expect = 3e-74
 Identities = 155/361 (42%), Positives = 213/361 (59%), Gaps = 2/361 (0%)
 Frame = +3

Query: 3    LKTIRTDNGLEFCNKKFSDLCALHGIIHHRTVRHNPQQNGVAERMNRTIMDKVRCLMVSS 182
            +K +RTDNG+EFC+K F   C   GI+HH TV H PQQNGVAERMN  I+ K RC++ ++
Sbjct: 590  VKILRTDNGMEFCSKIFKSYCKSEGIVHHYTVPHTPQQNGVAERMNMAIISKARCMLSNA 649

Query: 183  GIPKPFWGEAVSTAVYLINRSPSTAINFKTPLEMWSGEPPNLSNLRVFGCAAFVHQKEGK 362
             +PK FW EAVST  YLINRSPS A + KTP+E+WSG P N S+LRVFGC A+ H   GK
Sbjct: 650  DLPKQFWAEAVSTTCYLINRSPSYATDKKTPIEVWSGSPANYSDLRVFGCTAYAHVDNGK 709

Query: 363  LDPRSRKGVFIGYPSGVKGYKVWLKGEPGVRVLVSRDVIFNEQDMPCLKAEANPENPSET 542
            L+PR+ K +F+GYPSGVKGYK+W       +V++SR+V+F+E  +   K   N    S+ 
Sbjct: 710  LEPRAIKCIFLGYPSGVKGYKLWCPETK--KVVISRNVVFHESVILHDKPSTNVPVESQE 767

Query: 543  PIDGIIPVEVENTSESSQPHDQPESSGTSDIPTDXXXXXXXXXXXXXXXXXXXXXXAQAQ 722
                   V+VE+   S    ++   +   D P                        +  Q
Sbjct: 768  KAS----VQVEHLISSGHAPEKENVAINQDAPV-----------------IEDSDSSIVQ 806

Query: 723  ALRDYQLSRDRARRETRKPARY-GYSYIVSYACAAASFVE-EKEPMCFSDVLKSPNRSLW 896
                  +++D+ +R  + P RY   + IV+YA + A  +E   EP  +S+ + S + + W
Sbjct: 807  QSSKRSIAKDKPKRNIKPPRRYIEEANIVAYALSVAEEIEGNAEPSTYSEAIVSDDCNRW 866

Query: 897  LRAMEEEMSSLHKNKTWILVPKPSKQKLIDCKWIFKIKEPDSANEPPRFKARLVAKGFSQ 1076
            + AM +EM SL KN TW  V  P ++K I CKWIFK KE  S ++  R+KARLVAKG+SQ
Sbjct: 867  ITAMHDEMESLKKNHTWEFVKLPKEKKPIRCKWIFKRKEGMSPSDEARYKARLVAKGYSQ 926

Query: 1077 I 1079
            I
Sbjct: 927  I 927


>gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1312

 Score =  285 bits (728), Expect = 3e-74
 Identities = 155/361 (42%), Positives = 213/361 (59%), Gaps = 2/361 (0%)
 Frame = +3

Query: 3    LKTIRTDNGLEFCNKKFSDLCALHGIIHHRTVRHNPQQNGVAERMNRTIMDKVRCLMVSS 182
            +K +RTDNG+EFC+K F   C   GI+HH TV H PQQNGVAERMN  I+ K RC++ ++
Sbjct: 590  VKILRTDNGMEFCSKIFKSYCKSEGIVHHYTVPHTPQQNGVAERMNMAIISKARCMLSNA 649

Query: 183  GIPKPFWGEAVSTAVYLINRSPSTAINFKTPLEMWSGEPPNLSNLRVFGCAAFVHQKEGK 362
             +PK FW EAVST  YLINRSPS A + KTP+E+WSG P N S+LRVFGC A+ H   GK
Sbjct: 650  DLPKQFWAEAVSTTCYLINRSPSYATDKKTPIEVWSGSPANYSDLRVFGCTAYAHVDNGK 709

Query: 363  LDPRSRKGVFIGYPSGVKGYKVWLKGEPGVRVLVSRDVIFNEQDMPCLKAEANPENPSET 542
            L+PR+ K +F+GYPSGVKGYK+W       +V++SR+V+F+E  +   K   N    S+ 
Sbjct: 710  LEPRAIKCIFLGYPSGVKGYKLWCPETK--KVVISRNVVFHESVILHDKPSTNVPVESQE 767

Query: 543  PIDGIIPVEVENTSESSQPHDQPESSGTSDIPTDXXXXXXXXXXXXXXXXXXXXXXAQAQ 722
                   V+VE+   S    ++   +   D P                        +  Q
Sbjct: 768  KAS----VQVEHLISSGHAPEKENVAINQDAPV-----------------IEDSDSSIVQ 806

Query: 723  ALRDYQLSRDRARRETRKPARY-GYSYIVSYACAAASFVE-EKEPMCFSDVLKSPNRSLW 896
                  +++D+ +R  + P RY   + IV+YA + A  +E   EP  +S+ + S + + W
Sbjct: 807  QSSKRSIAKDKPKRNIKPPRRYIEEANIVAYALSVAEEIEGNAEPSTYSEAIVSDDCNRW 866

Query: 897  LRAMEEEMSSLHKNKTWILVPKPSKQKLIDCKWIFKIKEPDSANEPPRFKARLVAKGFSQ 1076
            + AM +EM SL KN TW  V  P ++K I CKWIFK KE  S ++  R+KARLVAKG+SQ
Sbjct: 867  ITAMHDEMESLKKNHTWEFVKLPKEKKPIRCKWIFKRKEGMSPSDEARYKARLVAKGYSQ 926

Query: 1077 I 1079
            I
Sbjct: 927  I 927


>emb|CAA31653.1| polyprotein [Arabidopsis thaliana]
          Length = 1291

 Score =  284 bits (727), Expect = 4e-74
 Identities = 149/365 (40%), Positives = 213/365 (58%), Gaps = 8/365 (2%)
 Frame = +3

Query: 3    LKTIRTDNGLEFCNKKFSDLCALHGIIHHRTVRHNPQQNGVAERMNRTIMDKVRCLMVSS 182
            +K +RTDNGLEFCN KF   C  HGI  H+T  + PQQNGVAERMNRTIM+KVRC++  S
Sbjct: 570  VKCLRTDNGLEFCNLKFDAYCKEHGIERHKTCTYTPQQNGVAERMNRTIMEKVRCMLNES 629

Query: 183  GIPKPFWGEAVSTAVYLINRSPSTAINFKTPLEMWSGEPPNLSNLRVFGCAAFVHQKEGK 362
            G+ + FW EA +TA YLINRSP++AI+   P E+W  + P   +LR FG  A+VH  +GK
Sbjct: 630  GLGEEFWAEAAATAAYLINRSPASAIDHNVPEELWLNKKPGYKHLRRFGSIAYVHIDQGK 689

Query: 363  LDPRSRKGVFIGYPSGVKGYKVWLKGEPGVRVLVSRDVIFNEQDM--------PCLKAEA 518
            L PR+ KG+FIGYP+G KGYK+WL  E   + ++SR+V+F+E+ +          +++EA
Sbjct: 690  LKPRALKGIFIGYPAGTKGYKIWLLEEH--KCVISRNVLFHEESVYKDTMKKERVVESEA 747

Query: 519  NPENPSETPIDGIIPVEVENTSESSQPHDQPESSGTSDIPTDXXXXXXXXXXXXXXXXXX 698
             P + S++ +  +      N+ E  Q  D+ ES  + +   +                  
Sbjct: 748  EPASHSKSTLIKVKTPGNLNSGEVIQVSDEEESDESVEEEQE------------PETQVE 795

Query: 699  XXXXAQAQALRDYQLSRDRARRETRKPARYGYSYIVSYACAAASFVEEKEPMCFSDVLKS 878
                    +L +YQL+RDR RR+   PAR+     V++A      +  +EP  + +    
Sbjct: 796  LPETQTTSSLANYQLARDRERRQIHPPARFTEESGVAFALVTVETLSMEEPQSYQEATSD 855

Query: 879  PNRSLWLRAMEEEMSSLHKNKTWILVPKPSKQKLIDCKWIFKIKEPDSANEPPRFKARLV 1058
                 W  A  EEM SL KN TW+LV KP  +K+I C+W+FK+K      EP R+KA+LV
Sbjct: 856  KEWKKWKLATHEEMDSLIKNGTWVLVDKPQNRKIIGCRWLFKLKSGSPGVEPVRYKAQLV 915

Query: 1059 AKGFS 1073
            AKG++
Sbjct: 916  AKGYT 920


>gb|AAF19226.1|AC007505_2 Highly similar to Ta1-3 polyprotein [Arabidopsis thaliana]
          Length = 1356

 Score =  284 bits (727), Expect = 4e-74
 Identities = 155/371 (41%), Positives = 208/371 (56%), Gaps = 13/371 (3%)
 Frame = +3

Query: 3    LKTIRTDNGLEFCNKKFSDLCALHGIIHHRTVRHNPQQNGVAERMNRTIMDKVRCLMVSS 182
            +K +RTDNGLEFCN +F   C  HGI  HRT  + PQQNGVAERMNRTIM+KVRCL+  S
Sbjct: 560  VKCLRTDNGLEFCNSRFDSYCKEHGIERHRTCTYTPQQNGVAERMNRTIMEKVRCLLNKS 619

Query: 183  GIPKPFWGEAVSTAVYLINRSPSTAINFKTPLEMWSGEPPNLSNLRVFGCAAFVHQKEGK 362
            G+ + FW EA +TA YLINRSP++AIN   P EMW    P   +LR FG  A+VHQ +GK
Sbjct: 620  GVEEVFWAEAAATAAYLINRSPASAINHNVPEEMWLNRKPGYKHLRKFGSIAYVHQDQGK 679

Query: 363  LDPRSRKGVFIGYPSGVKGYKVWLKGEPGVRVLVSRDVIFNE----QDMPCLKAEANPEN 530
            L PR+ KG F+GYP+G KGYKVWL  E   + ++SR+V+F E    +D+   + + +  N
Sbjct: 680  LKPRALKGFFLGYPAGTKGYKVWLLEEE--KCVISRNVVFQESVVYRDLKVKEDDTDNLN 737

Query: 531  PSETPIDGIIPVEVENTSES---------SQPHDQPESSGTSDIPTDXXXXXXXXXXXXX 683
              ET    +   +    S S         S+P  + E S  S+   +             
Sbjct: 738  QKETTSSEVEQNKFAEASGSGGVIQLQSDSEPITEGEQSSDSEEEVE------------- 784

Query: 684  XXXXXXXXXAQAQALRDYQLSRDRARRETRKPARYGYSYIVSYACAAASFVEEKEPMCFS 863
                      +   L  Y+L+RDR RR    P R+     V++A         +EP  + 
Sbjct: 785  -YSEKTQETPKRTGLTTYKLARDRVRRNINPPTRFTEESSVTFALVVVENCIVQEPQSYQ 843

Query: 864  DVLKSPNRSLWLRAMEEEMSSLHKNKTWILVPKPSKQKLIDCKWIFKIKEPDSANEPPRF 1043
            + ++S +   W  A  +EM SL KN TW LV KP  +K+I C+W+FK+K      EP RF
Sbjct: 844  EAMESQDCEKWDMATHDEMDSLMKNGTWDLVDKPKDRKIIGCRWLFKLKSGIPGVEPTRF 903

Query: 1044 KARLVAKGFSQ 1076
            KARLVAKG++Q
Sbjct: 904  KARLVAKGYTQ 914


>gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1243

 Score =  282 bits (722), Expect = 1e-73
 Identities = 155/361 (42%), Positives = 214/361 (59%), Gaps = 2/361 (0%)
 Frame = +3

Query: 3    LKTIRTDNGLEFCNKKFSDLCALHGIIHHRTVRHNPQQNGVAERMNRTIMDKVRCLMVSS 182
            +K +RTDNG+EFC+K F   C   GI+ H T  H PQQN VAERMNRTI+ K RC++ ++
Sbjct: 527  VKILRTDNGMEFCSKIFKSYCKSEGIVCHYTAPHTPQQNDVAERMNRTIISKARCMLSNA 586

Query: 183  GIPKPFWGEAVSTAVYLINRSPSTAINFKTPLEMWSGEPPNLSNLRVFGCAAFVHQKEGK 362
            G+PK FW EAVSTA YLINRSP  AI+ KTP+E+WSG P N S+LRVFGC A+ H   GK
Sbjct: 587  GLPKQFWAEAVSTACYLINRSPGYAIDKKTPIEVWSGSPTNYSDLRVFGCTAYAHVDNGK 646

Query: 363  LDPRSRKGVFIGYPSGVKGYKVWLKGEPGVRVLVSRDVIFNEQDMPCLKAEANPENPSET 542
            L+PR+ K +F+GY SGVKGYK+W       +V++SR+V+F+E  +   K   N    S+ 
Sbjct: 647  LEPRAIKCIFLGYASGVKGYKLWCPETK--KVVISRNVVFHESVILHDKPSTNVPVESQE 704

Query: 543  PIDGIIPVEVENTSESSQPHDQPESSGTSDIPTDXXXXXXXXXXXXXXXXXXXXXXAQAQ 722
                   V+VE+   S    ++ + +   D P                        +   
Sbjct: 705  KAS----VQVEHLISSGHAPEKEDVAINQDAPV-----------------IEDSDSSIVH 743

Query: 723  ALRDYQLSRDRARRETRKPARY-GYSYIVSYACAAASFVE-EKEPMCFSDVLKSPNRSLW 896
                  +++D+ +R  + P RY   + IV+YA + A  +E   EP  +S+ + S + + W
Sbjct: 744  QSPKRSIAKDKPKRNIKPPRRYIEEAKIVAYALSVAEKIEGNAEPSTYSEAIVSDDCNRW 803

Query: 897  LRAMEEEMSSLHKNKTWILVPKPSKQKLIDCKWIFKIKEPDSANEPPRFKARLVAKGFSQ 1076
            + AM +EM SL KN TW LV  P ++K I CKWIFK KE  S ++  R+KARLVAKG+SQ
Sbjct: 804  ITAMHDEMESLEKNHTWELVKLPKEKKPIRCKWIFKRKEGMSPSDEARYKARLVAKGYSQ 863

Query: 1077 I 1079
            I
Sbjct: 864  I 864


>gb|AAD23690.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1333

 Score =  278 bits (711), Expect = 3e-72
 Identities = 154/362 (42%), Positives = 207/362 (57%), Gaps = 4/362 (1%)
 Frame = +3

Query: 3    LKTIRTDNGLEFCNKKFSDLCALHGIIHHRTVRHNPQQNGVAERMNRTIMDKVRCLMVSS 182
            +KT+RTDNGLEFCN+ F + C+  GI+ HRT  + PQQNGVAERMNRT+M+KVR ++  S
Sbjct: 539  IKTLRTDNGLEFCNRSFDEFCSQKGILWHRTCAYTPQQNGVAERMNRTLMEKVRSMLSDS 598

Query: 183  GIPKPFWGEAVSTAVYLINRSPSTAINFKTPLEMWSGEPPNLSNLRVFGCAAFVHQKEGK 362
            G+PK FW EA  T   LIN++PS+A+N++ P + WSG+ P  S LR FGC AFVH  +GK
Sbjct: 599  GLPKKFWAEATHTTAILINKTPSSALNYEVPDKRWSGKSPIYSYLRRFGCIAFVHTDDGK 658

Query: 363  LDPRSRKGVFIGYPSGVKGYKVWLKGEPGVRVLVSRDVIFNE----QDMPCLKAEANPEN 530
            L+PR++KG+ +GYP GVKGYK+WL  E   + +VSR+VIF E    +DM   K     EN
Sbjct: 659  LNPRAKKGILVGYPIGVKGYKIWLLEEK--KCVVSRNVIFQENASYKDMMQSKDAEKDEN 716

Query: 531  PSETPIDGIIPVEVENTSESSQPHDQPESSGTSDIPTDXXXXXXXXXXXXXXXXXXXXXX 710
              E P    + +++++    +   D P     S                           
Sbjct: 717  --EAPPSSYLDLDLDHEEVITSGGDDPIVEAQSPFNPSPATTQTYSEGVNSETDI----- 769

Query: 711  AQAQALRDYQLSRDRARRETRKPARYGYSYIVSYACAAASFVEEKEPMCFSDVLKSPNRS 890
               Q+   YQL RDR RR  R P R+     ++ A        E EP  +S+  +S N +
Sbjct: 770  --IQSPLSYQLVRDRDRRTIRAPVRFDDEDYLAEALYTTEDSGEIEPADYSEAKRSMNWN 827

Query: 891  LWLRAMEEEMSSLHKNKTWILVPKPSKQKLIDCKWIFKIKEPDSANEPPRFKARLVAKGF 1070
             W  AM EEM S  KN TW +V +P  QK+I  +WI+K K      E  RFKARLVAKG+
Sbjct: 828  KWKLAMNEEMESQIKNHTWTVVKRPQHQKVIGSRWIYKFKLGIPGVEEGRFKARLVAKGY 887

Query: 1071 SQ 1076
            +Q
Sbjct: 888  AQ 889


>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group] gi|77549942|gb|ABA92739.1|
            retrotransposon protein, putative, Ty1-copia subclass
            [Oryza sativa Japonica Group]
          Length = 1373

 Score =  277 bits (709), Expect = 5e-72
 Identities = 154/363 (42%), Positives = 215/363 (59%), Gaps = 4/363 (1%)
 Frame = +3

Query: 3    LKTIRTDNGLEFCNKKFSDLCALHGIIHHRTVRHNPQQNGVAERMNRTIMDKVRCLMVSS 182
            +K +RTDNG EFC+  F+D C   GI+ H T+ H PQQNGVAERMNRTI+ + RC++  +
Sbjct: 547  VKLLRTDNGGEFCSHAFNDYCRQEGIVRHHTIPHTPQQNGVAERMNRTIISRARCMLSHA 606

Query: 183  GIPKPFWGEAVSTAVYLINRSPSTAINFKTPLEMWSGEPPNLSNLRVFGCAAFVHQKEGK 362
             + K FW EA STA YLINRSPS  +N KTP+E+WSG P + S L+VFGC A+ H   GK
Sbjct: 607  RMNKRFWAEAASTACYLINRSPSIPLNKKTPIEVWSGTPADYSQLKVFGCTAYAHVDNGK 666

Query: 363  LDPRSRKGVFIGYPSGVKGYKVWLKGEPGVRVLVSRDVIFNEQDM--PCLKAEANPENPS 536
            L+PR+ K +F+GY SGVKGYK+W   E G +  +SR V+FNE  M    L +E  PE   
Sbjct: 667  LEPRAVKCLFLGYGSGVKGYKLW-NPETG-KTFMSRSVVFNESVMFTNSLPSEHVPEKEL 724

Query: 537  ETPIDGIIPVEVENTSESSQPHDQPESSGTSDIPTDXXXXXXXXXXXXXXXXXXXXXXAQ 716
            +     +  V+ +   +    H+Q + +  +D+  D                        
Sbjct: 725  QRMHMQVEHVDDDTGVQVEPVHEQDDHN--NDVADDDAHDDVQQTPPI------------ 770

Query: 717  AQALRDYQLSRDRARRETRKPARYGYSYIVS-YACAAASFVEE-KEPMCFSDVLKSPNRS 890
             Q   +  +++ +++R T+ P R      +S YA + A  VE   EP  + + ++  +  
Sbjct: 771  LQLEEELPIAQRKSKRTTKPPKRLIEECNLSYYALSCAEQVENVHEPATYKEAVRCGDSE 830

Query: 891  LWLRAMEEEMSSLHKNKTWILVPKPSKQKLIDCKWIFKIKEPDSANEPPRFKARLVAKGF 1070
             W+ AM EEM SL KN TW +VP P K+K I CKWIFK KE  S++EPP++KARLVA+G+
Sbjct: 831  NWISAMHEEMQSLEKNSTWEVVPLPKKKKTISCKWIFKRKEGLSSSEPPKYKARLVARGY 890

Query: 1071 SQI 1079
            SQI
Sbjct: 891  SQI 893


>pir||S23319 hypothetical protein 2 - Arabidopsis thaliana retrotransposon Ta1-2
            (strain Landsberg) (fragment) gi|16384|emb|CAA37924.1|
            unnamed protein product [Arabidopsis thaliana]
          Length = 1084

 Score =  277 bits (709), Expect = 5e-72
 Identities = 152/377 (40%), Positives = 213/377 (56%), Gaps = 19/377 (5%)
 Frame = +3

Query: 3    LKTIRTDNGLEFCNKKFSDLCALHGIIHHRTVRHNPQQNGVAERMNRTIMDKVRCLMVSS 182
            +K +RTDNGLEFCN KF   C  HGI  H T  + PQQNGVA+RMNRTIM+KVRC++  S
Sbjct: 470  VKCLRTDNGLEFCNLKFDAYCKDHGIERHMTCTYTPQQNGVADRMNRTIMEKVRCMLNES 529

Query: 183  GIPKPFWGEAVSTAVYLINRSPSTAINFKTPLEMWSGEPPNLSNLRVFGCAAFVHQKEGK 362
            G+ + FW EA +TA YLI+RSP++AI+   P E+W  + P   +LR FG  A+VH  +GK
Sbjct: 530  GLGEEFWAEAAATAAYLISRSPASAIDHNVPEELWLNKKPGYKHLRRFGSIAYVHIDQGK 589

Query: 363  LDPRSRKGVFIGYPSGVKGYKVWLKGEPGVRVLVSRDVIFNE--------QDMPCLKAEA 518
            L PR+ KG+FIGYPSG KGYK+WL  E   + ++SR+V+F+E        +    +++EA
Sbjct: 590  LKPRALKGIFIGYPSGTKGYKIWLLEEQ--KCVISRNVLFHEELVYKDTIEKERVVESEA 647

Query: 519  NPENPSETPI-----------DGIIPVEVENTSESSQPHDQPESSGTSDIPTDXXXXXXX 665
             P + S++ +            G+I V  E  S+ S   +Q E     ++P         
Sbjct: 648  EPASHSKSTLIKMKTPGNLNSGGVIQVSDEEESDESVDEEQ-EPEPQVELP--------- 697

Query: 666  XXXXXXXXXXXXXXXAQAQALRDYQLSRDRARRETRKPARYGYSYIVSYACAAASFVEEK 845
                               +L +YQL RDR RR+   PAR+     V++A      +  +
Sbjct: 698  -------------ETQTTSSLANYQLVRDRERRQIHPPARFTEESGVAFALVTVETLSME 744

Query: 846  EPMCFSDVLKSPNRSLWLRAMEEEMSSLHKNKTWILVPKPSKQKLIDCKWIFKIKEPDSA 1025
            EP  + +         W  A  EE +SL KN TW+LV KP  +K+I C+W+FK+K     
Sbjct: 745  EPQSYQEATSDKEWKKWKLATHEEKNSLIKNGTWVLVDKPKDRKIIGCRWLFKMKSGIPG 804

Query: 1026 NEPPRFKARLVAKGFSQ 1076
             EP R+KARLVAKG++Q
Sbjct: 805  VEPVRYKARLVAKGYTQ 821


>gb|AAC62132.1| copia-like retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1137

 Score =  277 bits (709), Expect = 5e-72
 Identities = 158/389 (40%), Positives = 215/389 (55%), Gaps = 31/389 (7%)
 Frame = +3

Query: 3    LKTIRTDNGLEFCNKKFSDLCALHGIIHHRTVRHNPQQNGVAERMNRTIMDKVRCLMVSS 182
            LK +RTDNGLEFCN KF ++C   GI+ HRT  + PQQNGVAER+NRTIM+KVR ++  S
Sbjct: 355  LKHLRTDNGLEFCNHKFDEVCKKEGIVRHRTCTYTPQQNGVAERLNRTIMNKVRSMLSES 414

Query: 183  GIPKPFWGEAVSTAVYLINRSPSTAINFKTPLEMWSGEPPNLSNLRVFGCAAFVHQKEGK 362
            G+ K FW +A STAVYLINRSPS++I  K P E+W+   PN S L+ FGC  +V+ +EGK
Sbjct: 415  GLDKKFWAKAASTAVYLINRSPSSSIENKIPEELWTSAVPNFSGLKRFGCVVYVYSQEGK 474

Query: 363  LDPRSRKGVFIGYPSGVKGYKVWLKGEPGVRVLVSRDVIFNEQDM--------------- 497
            LDPR++KGVF+GYP+GVKG++VW+  E   R  +SR+V+F E  M               
Sbjct: 475  LDPRAKKGVFVGYPNGVKGFRVWMIEEE--RCSISRNVVFREDVMYKDILNQSTSGMSFD 532

Query: 498  --------PCLKAEANPENPSETPIDGIIPVEVENTSESSQPHDQPESSGTSDIPTDXXX 653
                    P  +   N     E  + G   V  ++T +SS+  + P S+G+S        
Sbjct: 533  FPLATNRIPSFECAGN-RKEDEISVQG--GVSDDDTKQSSE--ESPISTGSS-------- 579

Query: 654  XXXXXXXXXXXXXXXXXXXAQAQALRDYQLSRDRARRETRKPARYG--------YSYIVS 809
                                Q    R YQ++RD+ +R+T+ P +             I  
Sbjct: 580  -------------------GQNSGQRTYQIARDKPKRQTKIPDKLRDYELNEEVLDEIAG 620

Query: 810  YACAAASFVEEKEPMCFSDVLKSPNRSLWLRAMEEEMSSLHKNKTWILVPKPSKQKLIDC 989
            YA          EP  +   L+  +  +WL+A++EE+ SL KN TW+LV +   QK I C
Sbjct: 621  YAYMITEDGGNPEPNDYQKALQDSDYKMWLKAVDEEIESLLKNNTWVLVNRDQFQKPIGC 680

Query: 990  KWIFKIKEPDSANEPPRFKARLVAKGFSQ 1076
            KW+FK K      E PRFKARLV KG+SQ
Sbjct: 681  KWVFKRKSGIVGVEKPRFKARLVVKGYSQ 709


>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1333

 Score =  277 bits (708), Expect = 6e-72
 Identities = 154/363 (42%), Positives = 215/363 (59%), Gaps = 4/363 (1%)
 Frame = +3

Query: 3    LKTIRTDNGLEFCNKKFSDLCALHGIIHHRTVRHNPQQNGVAERMNRTIMDKVRCLMVSS 182
            +K +RTDNG EFC+  F+D C   GI+ H T+ H PQQNGVAERMNRTI+ + RC++  +
Sbjct: 547  VKLLRTDNGGEFCSHAFNDYCRQEGIVRHHTIPHTPQQNGVAERMNRTIISRARCMLSHA 606

Query: 183  GIPKPFWGEAVSTAVYLINRSPSTAINFKTPLEMWSGEPPNLSNLRVFGCAAFVHQKEGK 362
             + K FW EA STA YLINRSPS  +N KTP+E+WSG P + S L+VFGC A+ H   GK
Sbjct: 607  RMNKRFWAEAASTACYLINRSPSIPLNKKTPIEVWSGMPADYSQLKVFGCTAYAHVDNGK 666

Query: 363  LDPRSRKGVFIGYPSGVKGYKVWLKGEPGVRVLVSRDVIFNEQDM--PCLKAEANPENPS 536
            L+PR+ K +F+GY SGVKGYK+W   E G +  +SR V+FNE  M    L +E  PE   
Sbjct: 667  LEPRAVKCLFLGYGSGVKGYKLW-NPETG-KTFMSRSVVFNESVMFTNSLPSEHVPEKEL 724

Query: 537  ETPIDGIIPVEVENTSESSQPHDQPESSGTSDIPTDXXXXXXXXXXXXXXXXXXXXXXAQ 716
            +     +  V+ +   +    H+Q + +  +D+  D                        
Sbjct: 725  QRMHMQVEHVDDDTGVQVEPVHEQDDHN--NDVADDDAHDDVQQTPPI------------ 770

Query: 717  AQALRDYQLSRDRARRETRKPARYGYSYIVS-YACAAASFVEE-KEPMCFSDVLKSPNRS 890
             Q   +  +++ +++R T+ P R      +S YA + A  VE   EP  + + ++  +  
Sbjct: 771  LQLEEELPIAQRKSKRTTKPPKRLIEECNLSYYALSCAEQVENVHEPATYKEAVRCGDSE 830

Query: 891  LWLRAMEEEMSSLHKNKTWILVPKPSKQKLIDCKWIFKIKEPDSANEPPRFKARLVAKGF 1070
             W+ AM EEM SL KN TW +VP P K+K I CKWIFK KE  S++EPP++KARLVA+G+
Sbjct: 831  NWISAMHEEMQSLEKNSTWEVVPLPKKKKTISCKWIFKRKEGLSSSEPPKYKARLVARGY 890

Query: 1071 SQI 1079
            SQI
Sbjct: 891  SQI 893


>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1333

 Score =  276 bits (705), Expect = 1e-71
 Identities = 154/366 (42%), Positives = 216/366 (59%), Gaps = 7/366 (1%)
 Frame = +3

Query: 3    LKTIRTDNGLEFCNKKFSDLCALHGIIHHRTVRHNPQQNGVAERMNRTIMDKVRCLMVSS 182
            +K +RTDNG EFC+  F+D C   GI+ H T+ H PQQNGVAERMNRTI+ + RC++  +
Sbjct: 547  VKLLRTDNGGEFCSHAFNDYCRQEGIVRHHTIPHTPQQNGVAERMNRTIISRARCMLSHA 606

Query: 183  GIPKPFWGEAVSTAVYLINRSPSTAINFKTPLEMWSGEPPNLSNLRVFGCAAFVHQKEGK 362
             + K FW EA STA YLINRSPS  +N KTP+E+WSG P + S L+VFGC A+ H   GK
Sbjct: 607  RMNKRFWAEAASTACYLINRSPSIPLNKKTPIEVWSGTPADYSQLKVFGCTAYAHVDNGK 666

Query: 363  LDPRSRKGVFIGYPSGVKGYKVWLKGEPGVRVLVSRDVIFNEQDM--PCLKAEANPENPS 536
            L+PR+ K +F+GY SGVKGYK+W   E G +  +SR V+FNE  M    L +E  PE   
Sbjct: 667  LEPRAVKCLFLGYGSGVKGYKLW-NPETG-KTFMSRSVVFNESVMFTNSLPSEHVPEKEL 724

Query: 537  ETPIDGIIPVEVENTSESSQPHDQP---ESSGTSDIPTDXXXXXXXXXXXXXXXXXXXXX 707
            +      + ++VE+  + +    +P   +    +D+  D                     
Sbjct: 725  QR-----MHMQVEHVDDYTGVQVEPVHEQDDHNNDVADDDAHDDVQQTPPI--------- 770

Query: 708  XAQAQALRDYQLSRDRARRETRKPARYGYSYIVS-YACAAASFVEE-KEPMCFSDVLKSP 881
                Q   +  +++ +++R T+ P R      +S YA + A  VE   EP  + + ++  
Sbjct: 771  ---LQLEEELPIAQRKSKRTTKPPKRLIEECNLSYYALSCAEQVENVHEPATYKEAVRCG 827

Query: 882  NRSLWLRAMEEEMSSLHKNKTWILVPKPSKQKLIDCKWIFKIKEPDSANEPPRFKARLVA 1061
            +   W+ AM EEM SL KN TW +VP P K+K I CKWIFK KE  S++EPP++KARLVA
Sbjct: 828  DSENWISAMHEEMQSLEKNSTWEVVPLPKKKKTISCKWIFKRKEGLSSSEPPKYKARLVA 887

Query: 1062 KGFSQI 1079
            +G+SQI
Sbjct: 888  RGYSQI 893